BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033133
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 98.2 bits (243), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 44/56 (78%), Positives = 53/56 (94%)
Query: 65 SSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMR 120
+S+GSRLE++VKKTV+ENPVVVYSKTWCSYSSEVK LFKRL V+PLV+ELDE+G +
Sbjct: 1 ASFGSRLEDAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQ 56
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 51/54 (94%)
Query: 65 SSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG 118
+S+GSR+EES++KTV+EN VV+YSKTWCSY +EVK LFKRLGV+PLV+ELD++G
Sbjct: 2 ASFGSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLG 55
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 61 QAMASSYGSRLEE-------SVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIE 113
Q+M S+ S LE +++T+S+N VV++SKT CSY + K LF + V V+E
Sbjct: 21 QSMESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVE 80
Query: 114 LD 115
LD
Sbjct: 81 LD 82
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117
+ K+ S PVVV+SKT+C Y + VK L ++G V+ELDE+
Sbjct: 11 KKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDEL 55
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117
+ K+ S PVVV+SKT+C Y + VK L ++G V+ELDE+
Sbjct: 12 KKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDEL 56
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 74 SVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115
+++T+S+N VV++SKT CSY + K LF + V V+ELD
Sbjct: 27 QIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELD 68
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 74 SVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115
+++T+S+N VV++SKT CSY + K LF + V V+ELD
Sbjct: 19 QIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELD 60
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117
VV++SK++C +S+ VK LF LGVE V+ELD++
Sbjct: 19 VVIFSKSYCPHSTRVKELFSSLGVECNVLELDQV 52
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEM 117
+ VK ++EN + V SKT+C YS + + LF++L V + LV++L++M
Sbjct: 8 KHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDM 56
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 75 VKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEM 117
VK + + V V +KT+C YS + + LF+ L V + LV+ELDEM
Sbjct: 13 VKDLIGQKEVFVAAKTYCPYSKATLSTLFQELNVPKSKALVLELDEM 59
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEM 117
+ VK ++EN + V SKT+C YS + + LF++L V + LV++L++M
Sbjct: 252 KHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDM 300
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117
++KTV V+++SKT C Y +VK + ++ IELD++
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQL 53
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117
++KTV V+++SKT C Y +VK + ++ IELD++
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQL 53
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117
++KTV V+++SKT C Y +VK + ++ IELD++
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQL 53
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEM 117
+ VK ++EN + V SKT+C Y + + LF++L V + LV++L++M
Sbjct: 16 KHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDM 64
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 75 VKKTVSENPVVVYSKTWCSY-SSEVKLLFKRLGV---EPLVIELDEM 117
VK + + V V +KT+C Y + + LF+ L V + LV+ELDEM
Sbjct: 30 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEM 76
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 75 VKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEM 117
VK + + V V +KT+C Y + + LF+ L V + LV+ELDEM
Sbjct: 10 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEM 56
>pdb|1Y0L|L Chain L, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|A Chain A, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|C Chain C, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|E Chain E, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y18|L Chain L, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|A Chain A, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|C Chain C, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|E Chain E, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|3CFJ|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFK|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|G Chain G, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|J Chain J, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|M Chain M, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|O Chain O, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
Length = 216
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 7 LTQFTSLSLNPSRSLSHIPTSNPGLVTANNYYTFSSR------TSLSVNGRRRRYGAVSV 60
+TQ ++L+ +P +++ S+ G VT +NY T+ T L + G +R V
Sbjct: 4 VTQESALTTSPGETVTLTCRSSSGAVTTSNYATWVQEKPDHLFTGL-IGGTNKRAPGVPA 62
Query: 61 QAMASSYGSRLEESVKKTVSENPVVVYSKTWCS----YSSEVKLLFKRLGVEPLVI 112
+ S G R ++ +E+ + + W S + KL KR P V
Sbjct: 63 RFSGSLIGDRAALTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVF 118
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 83 PVVVYSKTWCSYSSEVK-LLFKRLGVEP--LVIELDEMG 118
P++++SK+ CSYS K LL P +IELD+ G
Sbjct: 15 PIIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHG 53
>pdb|3IZR|MM Chain m, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 92
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 62 AMASSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGV 107
+ YG+R S++K + + V +SK +C + + + K +G+
Sbjct: 9 GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGI 54
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 12 SLSLNPSRSLSHIPTSNPGLVTANN 36
SL L+ R L HI + PG++TA N
Sbjct: 331 SLPLHGGRRLXHIHENRPGVLTALN 355
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 12 SLSLNPSRSLSHIPTSNPGLVTANN 36
SL L+ R L HI + PG++TA N
Sbjct: 325 SLPLHGGRRLXHIHENRPGVLTALN 349
>pdb|3F0I|A Chain A, Arsenate Reductase From Vibrio Cholerae.
pdb|3F0I|B Chain B, Arsenate Reductase From Vibrio Cholerae
Length = 119
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIE 113
VV+Y CS S E L + G+ P VI+
Sbjct: 6 VVIYHNPKCSKSRETLALLENQGIAPQVIK 35
>pdb|2ZKR|ZZ Chain z, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 92
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 62 AMASSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGV 107
+ YG+R S++K V + + ++K CS+ + K+ + +G+
Sbjct: 9 GIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGI 54
>pdb|1YSH|D Chain D, Localization And Dynamic Behavior Of Ribosomal Protein
L30e
Length = 73
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 63 MASSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGV 107
+ YG+R S++K + + V +SK +C + + + K +G+
Sbjct: 1 IVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGI 45
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 12 SLSLNPSRSLSHIPTSNPGLVTANN 36
SL L+ R L HI + PG++TA N
Sbjct: 330 SLPLHGGRRLMHIHENRPGVLTALN 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.127 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,200,434
Number of Sequences: 62578
Number of extensions: 104049
Number of successful extensions: 368
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 61
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)