Query 033133
Match_columns 126
No_of_seqs 180 out of 1150
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 10:13:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 99.6 2.2E-15 4.7E-20 106.0 5.4 48 75-122 1-48 (99)
2 PHA03050 glutaredoxin; Provisi 99.6 6.7E-15 1.4E-19 105.7 6.6 54 72-125 3-62 (108)
3 TIGR00365 monothiol glutaredox 99.5 1E-14 2.2E-19 102.3 6.4 54 72-125 2-60 (97)
4 PRK10824 glutaredoxin-4; Provi 99.5 4.3E-14 9.3E-19 103.4 6.7 56 70-125 3-63 (115)
5 KOG1752 Glutaredoxin and relat 99.5 6.9E-14 1.5E-18 101.0 6.7 51 71-121 3-53 (104)
6 cd03028 GRX_PICOT_like Glutare 99.5 5.2E-14 1.1E-18 96.7 5.2 51 75-125 1-56 (90)
7 PF00462 Glutaredoxin: Glutare 99.3 8.8E-13 1.9E-17 83.4 3.9 42 84-125 1-42 (60)
8 COG0695 GrxC Glutaredoxin and 99.3 2E-12 4.3E-17 88.1 5.7 36 83-118 2-37 (80)
9 PRK10329 glutaredoxin-like pro 99.3 1.9E-12 4.1E-17 88.3 5.2 43 83-125 2-44 (81)
10 PTZ00062 glutaredoxin; Provisi 99.3 3.2E-12 6.9E-17 101.2 6.5 58 68-125 99-161 (204)
11 TIGR02190 GlrX-dom Glutaredoxi 99.3 3.3E-12 7.2E-17 85.4 5.6 43 78-120 4-46 (79)
12 PRK10638 glutaredoxin 3; Provi 99.3 3.6E-12 7.7E-17 85.6 5.5 44 82-125 2-45 (83)
13 cd03418 GRX_GRXb_1_3_like Glut 99.3 4.3E-12 9.4E-17 82.2 5.1 43 83-125 1-43 (75)
14 cd03027 GRX_DEP Glutaredoxin ( 99.3 5.2E-12 1.1E-16 82.7 5.0 43 83-125 2-44 (73)
15 cd03029 GRX_hybridPRX5 Glutare 99.3 9.1E-12 2E-16 81.1 5.1 37 83-119 2-38 (72)
16 TIGR02194 GlrX_NrdH Glutaredox 99.2 9.4E-12 2E-16 81.6 4.8 42 84-125 1-42 (72)
17 TIGR02181 GRX_bact Glutaredoxi 99.2 1.3E-11 2.8E-16 81.3 4.7 42 84-125 1-42 (79)
18 cd02066 GRX_family Glutaredoxi 99.2 3.8E-11 8.3E-16 74.7 5.2 43 83-125 1-43 (72)
19 PRK11200 grxA glutaredoxin 1; 99.2 4E-11 8.6E-16 80.7 5.0 43 83-125 2-49 (85)
20 TIGR02183 GRXA Glutaredoxin, G 99.1 1E-10 2.2E-15 79.8 4.9 41 84-124 2-47 (86)
21 PRK12759 bifunctional gluaredo 99.0 2.2E-10 4.8E-15 97.9 5.5 41 82-122 2-42 (410)
22 TIGR02200 GlrX_actino Glutared 99.0 5.2E-10 1.1E-14 71.7 5.2 42 83-124 1-42 (77)
23 TIGR02196 GlrX_YruB Glutaredox 99.0 5.2E-10 1.1E-14 70.1 4.8 42 83-124 1-42 (74)
24 cd03419 GRX_GRXh_1_2_like Glut 99.0 8.1E-10 1.8E-14 72.2 5.2 37 83-119 1-37 (82)
25 cd02977 ArsC_family Arsenate R 99.0 5.9E-10 1.3E-14 77.9 4.5 42 84-125 1-42 (105)
26 TIGR02180 GRX_euk Glutaredoxin 99.0 1.1E-09 2.5E-14 71.4 4.9 35 84-118 1-37 (84)
27 cd03036 ArsC_like Arsenate Red 98.9 1.2E-09 2.5E-14 78.0 4.4 42 84-125 1-42 (111)
28 cd02976 NrdH NrdH-redoxin (Nrd 98.9 3.1E-09 6.7E-14 66.6 5.2 42 83-124 1-42 (73)
29 cd03031 GRX_GRX_like Glutaredo 98.9 2.8E-09 6.1E-14 80.8 5.1 43 83-125 1-49 (147)
30 PRK01655 spxA transcriptional 98.9 3.3E-09 7.1E-14 78.2 5.1 42 84-125 2-43 (131)
31 TIGR01617 arsC_related transcr 98.8 7.8E-09 1.7E-13 74.0 4.7 42 84-125 1-42 (117)
32 cd02973 TRX_GRX_like Thioredox 98.8 6.6E-09 1.4E-13 66.1 3.7 41 83-123 2-47 (67)
33 cd03032 ArsC_Spx Arsenate Redu 98.7 1.7E-08 3.7E-13 72.2 5.1 42 84-125 2-43 (115)
34 PRK12559 transcriptional regul 98.6 5.7E-08 1.2E-12 71.9 4.8 42 84-125 2-43 (131)
35 PRK13344 spxA transcriptional 98.6 6E-08 1.3E-12 71.8 4.9 42 84-125 2-43 (132)
36 cd03041 GST_N_2GST_N GST_N fam 98.5 3E-07 6.5E-12 60.7 4.8 41 84-124 2-42 (77)
37 cd03035 ArsC_Yffb Arsenate Red 98.5 2.3E-07 4.9E-12 66.1 4.5 42 84-125 1-42 (105)
38 cd03026 AhpF_NTD_C TRX-GRX-lik 98.4 6.6E-07 1.4E-11 61.9 4.5 54 70-123 2-60 (89)
39 cd02975 PfPDO_like_N Pyrococcu 98.3 7.6E-07 1.6E-11 63.2 4.4 53 71-123 11-70 (113)
40 cd03040 GST_N_mPGES2 GST_N fam 98.3 1.3E-06 2.8E-11 56.8 4.8 34 83-116 1-34 (77)
41 cd03033 ArsC_15kD Arsenate Red 98.3 1.4E-06 3E-11 63.1 4.9 43 83-125 1-43 (113)
42 TIGR00411 redox_disulf_1 small 98.2 1.7E-06 3.6E-11 56.1 4.1 41 83-123 2-48 (82)
43 cd00570 GST_N_family Glutathio 98.2 2.7E-06 5.8E-11 51.5 4.4 35 85-119 2-36 (71)
44 PHA02125 thioredoxin-like prot 98.1 4.1E-06 8.8E-11 55.3 4.3 37 84-120 2-38 (75)
45 PF05768 DUF836: Glutaredoxin- 98.1 7.5E-06 1.6E-10 55.2 4.8 40 83-122 1-44 (81)
46 cd03060 GST_N_Omega_like GST_N 98.1 8.5E-06 1.9E-10 52.5 4.9 33 85-117 2-34 (71)
47 cd03037 GST_N_GRX2 GST_N famil 98.0 1.5E-05 3.3E-10 51.1 4.6 34 85-118 2-35 (71)
48 TIGR00412 redox_disulf_2 small 98.0 1.2E-05 2.7E-10 53.4 4.2 36 83-119 2-41 (76)
49 COG0278 Glutaredoxin-related p 97.9 2.3E-05 4.9E-10 57.3 5.8 57 70-126 3-65 (105)
50 cd03059 GST_N_SspA GST_N famil 97.9 1.9E-05 4E-10 50.3 4.2 34 84-117 1-34 (73)
51 TIGR01295 PedC_BrcD bacterioci 97.9 4.3E-05 9.3E-10 55.4 6.3 45 74-118 15-65 (122)
52 cd03051 GST_N_GTT2_like GST_N 97.8 3.5E-05 7.7E-10 48.6 4.1 32 85-116 2-33 (74)
53 TIGR02187 GlrX_arch Glutaredox 97.7 5.1E-05 1.1E-09 59.0 5.0 53 71-123 124-181 (215)
54 cd01659 TRX_superfamily Thiore 97.7 5.7E-05 1.2E-09 43.1 4.0 38 84-121 1-43 (69)
55 cd03045 GST_N_Delta_Epsilon GS 97.7 6.4E-05 1.4E-09 48.0 4.5 33 84-116 1-33 (74)
56 cd02947 TRX_family TRX family; 97.7 0.0001 2.2E-09 46.5 5.4 42 82-123 12-58 (93)
57 TIGR00014 arsC arsenate reduct 97.7 5.4E-05 1.2E-09 54.4 4.5 42 84-125 1-42 (114)
58 cd02949 TRX_NTR TRX domain, no 97.7 0.00011 2.4E-09 49.9 5.5 40 84-123 17-62 (97)
59 cd03055 GST_N_Omega GST_N fami 97.7 0.0001 2.2E-09 49.9 5.0 37 81-117 16-52 (89)
60 COG1393 ArsC Arsenate reductas 97.6 8.9E-05 1.9E-09 54.3 4.9 43 83-125 2-44 (117)
61 cd03034 ArsC_ArsC Arsenate Red 97.6 8.2E-05 1.8E-09 53.2 4.5 41 84-124 1-41 (112)
62 PRK10853 putative reductase; P 97.6 9.4E-05 2E-09 53.9 4.6 42 84-125 2-43 (118)
63 TIGR01616 nitro_assoc nitrogen 97.6 0.00014 2.9E-09 53.8 5.0 43 83-125 2-44 (126)
64 cd02953 DsbDgamma DsbD gamma f 97.5 0.00015 3.3E-09 49.3 4.3 44 76-119 5-59 (104)
65 cd03056 GST_N_4 GST_N family, 97.5 0.0002 4.3E-09 45.3 4.4 32 85-116 2-33 (73)
66 PRK10026 arsenate reductase; P 97.4 0.00025 5.5E-09 53.7 4.9 43 82-124 2-44 (141)
67 cd03030 GRX_SH3BGR Glutaredoxi 97.4 0.00016 3.5E-09 50.8 3.6 34 93-126 17-50 (92)
68 PTZ00051 thioredoxin; Provisio 97.4 0.00063 1.4E-08 45.3 5.9 51 73-123 9-66 (98)
69 cd02959 ERp19 Endoplasmic reti 97.3 0.0009 1.9E-08 48.0 6.2 46 74-119 11-64 (117)
70 cd02954 DIM1 Dim1 family; Dim1 97.3 0.00042 9.2E-09 50.7 4.2 41 83-123 17-63 (114)
71 cd02994 PDI_a_TMX PDIa family, 97.2 0.00088 1.9E-08 45.1 5.2 46 77-122 13-65 (101)
72 PF13417 GST_N_3: Glutathione 97.2 0.00029 6.4E-09 45.9 2.7 33 86-118 1-33 (75)
73 PF00085 Thioredoxin: Thioredo 97.2 0.00088 1.9E-08 44.1 5.0 52 71-123 9-66 (103)
74 COG4545 Glutaredoxin-related p 97.1 0.00074 1.6E-08 47.6 4.1 40 85-124 5-44 (85)
75 KOG3029 Glutathione S-transfer 97.1 0.0011 2.3E-08 56.7 5.4 45 72-116 77-123 (370)
76 PF03960 ArsC: ArsC family; I 97.1 0.00079 1.7E-08 47.5 3.8 38 87-124 1-38 (110)
77 PRK13728 conjugal transfer pro 97.0 0.00086 1.9E-08 52.7 4.3 34 84-117 73-110 (181)
78 PRK15317 alkyl hydroperoxide r 97.0 0.00093 2E-08 58.1 4.8 55 69-123 105-164 (517)
79 TIGR02187 GlrX_arch Glutaredox 97.0 0.0015 3.2E-08 50.8 4.9 48 75-122 14-71 (215)
80 cd03058 GST_N_Tau GST_N family 96.9 0.0017 3.6E-08 41.8 4.3 33 84-116 1-33 (74)
81 PF13098 Thioredoxin_2: Thiore 96.9 0.00079 1.7E-08 45.9 2.9 23 81-103 6-28 (112)
82 cd03054 GST_N_Metaxin GST_N fa 96.9 0.0011 2.4E-08 42.5 3.3 27 90-116 14-40 (72)
83 cd02961 PDI_a_family Protein D 96.9 0.0028 6E-08 40.8 5.2 41 82-122 17-65 (101)
84 cd02989 Phd_like_TxnDC9 Phosdu 96.9 0.0044 9.6E-08 43.9 6.5 43 81-123 22-70 (113)
85 TIGR01068 thioredoxin thioredo 96.9 0.0028 6.1E-08 41.4 5.0 42 82-123 16-63 (101)
86 TIGR03140 AhpF alkyl hydropero 96.8 0.0016 3.5E-08 56.6 4.8 55 69-123 106-165 (515)
87 cd02996 PDI_a_ERp44 PDIa famil 96.8 0.0029 6.3E-08 43.4 4.9 40 84-123 22-73 (108)
88 cd02984 TRX_PICOT TRX domain, 96.8 0.0029 6.3E-08 41.9 4.7 40 83-122 17-62 (97)
89 PRK10387 glutaredoxin 2; Provi 96.7 0.0029 6.4E-08 47.5 4.8 34 84-117 1-34 (210)
90 PF13728 TraF: F plasmid trans 96.7 0.0052 1.1E-07 48.8 6.4 52 66-117 106-161 (215)
91 cd02998 PDI_a_ERp38 PDIa famil 96.7 0.0036 7.9E-08 41.4 4.7 22 83-104 21-42 (105)
92 cd02948 TRX_NDPK TRX domain, T 96.7 0.0049 1.1E-07 42.3 5.5 38 84-122 21-65 (102)
93 cd03061 GST_N_CLIC GST_N famil 96.7 0.0027 5.9E-08 44.7 4.2 27 89-115 19-45 (91)
94 cd03053 GST_N_Phi GST_N family 96.7 0.0038 8.3E-08 40.0 4.6 34 84-117 2-35 (76)
95 KOG0911 Glutaredoxin-related p 96.7 0.0049 1.1E-07 50.4 6.0 55 71-125 128-187 (227)
96 cd02951 SoxW SoxW family; SoxW 96.6 0.0037 8E-08 43.9 4.6 28 75-102 6-36 (125)
97 cd02956 ybbN ybbN protein fami 96.6 0.0037 8E-08 41.6 4.4 41 83-123 15-61 (96)
98 cd03003 PDI_a_ERdj5_N PDIa fam 96.6 0.0034 7.4E-08 42.4 4.1 41 83-123 21-67 (101)
99 PRK09381 trxA thioredoxin; Pro 96.6 0.0061 1.3E-07 41.6 5.3 42 82-123 23-70 (109)
100 TIGR03143 AhpF_homolog putativ 96.6 0.0034 7.3E-08 55.3 5.0 55 69-123 465-524 (555)
101 PHA02278 thioredoxin-like prot 96.6 0.0097 2.1E-07 42.1 6.2 38 80-117 13-57 (103)
102 cd03080 GST_N_Metaxin_like GST 96.6 0.0051 1.1E-07 40.0 4.5 33 84-116 2-41 (75)
103 cd03001 PDI_a_P5 PDIa family, 96.5 0.011 2.4E-07 39.3 6.1 41 83-123 21-67 (103)
104 cd03052 GST_N_GDAP1 GST_N fami 96.5 0.0052 1.1E-07 40.3 4.2 33 84-116 1-33 (73)
105 cd02985 TRX_CDSP32 TRX family, 96.5 0.0072 1.6E-07 41.6 5.1 36 83-118 18-58 (103)
106 PLN00410 U5 snRNP protein, DIM 96.4 0.0046 9.9E-08 46.9 4.2 41 83-123 26-72 (142)
107 TIGR01126 pdi_dom protein disu 96.4 0.0037 8.1E-08 41.1 3.4 41 83-123 16-64 (102)
108 cd03049 GST_N_3 GST_N family, 96.4 0.0059 1.3E-07 39.0 4.1 32 85-116 2-35 (73)
109 cd03005 PDI_a_ERp46 PDIa famil 96.4 0.0071 1.5E-07 40.2 4.7 40 82-121 18-66 (102)
110 cd02999 PDI_a_ERp44_like PDIa 96.4 0.0093 2E-07 41.2 5.4 50 72-121 10-65 (100)
111 cd03004 PDI_a_ERdj5_C PDIa fam 96.3 0.0066 1.4E-07 41.0 4.2 41 83-123 22-68 (104)
112 cd02962 TMX2 TMX2 family; comp 96.3 0.0074 1.6E-07 45.8 4.9 40 84-123 51-97 (152)
113 cd02963 TRX_DnaJ TRX domain, D 96.1 0.0092 2E-07 41.7 4.2 41 83-123 27-74 (111)
114 cd03038 GST_N_etherase_LigE GS 96.1 0.0094 2E-07 39.3 4.0 27 90-116 14-40 (84)
115 TIGR02740 TraF-like TraF-like 96.1 0.014 3E-07 47.8 5.8 46 72-117 158-207 (271)
116 cd03002 PDI_a_MPD1_like PDI fa 96.1 0.011 2.5E-07 39.8 4.5 34 83-116 21-60 (109)
117 cd02952 TRP14_like Human TRX-r 96.1 0.0087 1.9E-07 43.9 4.0 34 84-117 25-71 (119)
118 cd02993 PDI_a_APS_reductase PD 96.1 0.021 4.5E-07 39.5 5.7 36 81-116 22-64 (109)
119 TIGR02182 GRXB Glutaredoxin, G 96.0 0.0095 2E-07 45.8 4.2 32 86-117 2-33 (209)
120 cd02986 DLP Dim1 family, Dim1- 96.0 0.013 2.9E-07 43.2 4.8 40 84-123 18-63 (114)
121 PRK10996 thioredoxin 2; Provis 96.0 0.013 2.7E-07 42.9 4.7 41 83-123 55-101 (139)
122 PRK10877 protein disulfide iso 96.0 0.0099 2.1E-07 47.5 4.4 34 82-115 109-145 (232)
123 cd03000 PDI_a_TMX3 PDIa family 96.0 0.0073 1.6E-07 41.2 3.1 45 77-121 11-65 (104)
124 cd02955 SSP411 TRX domain, SSP 96.0 0.013 2.8E-07 43.0 4.5 41 81-121 15-65 (124)
125 cd03039 GST_N_Sigma_like GST_N 95.9 0.017 3.7E-07 36.8 4.2 32 85-116 2-33 (72)
126 cd03048 GST_N_Ure2p_like GST_N 95.9 0.019 4.1E-07 37.5 4.5 32 84-116 2-33 (81)
127 cd02966 TlpA_like_family TlpA- 95.8 0.014 3E-07 37.9 3.5 44 81-124 20-71 (116)
128 PRK09481 sspA stringent starva 95.8 0.017 3.8E-07 44.0 4.6 34 83-116 10-43 (211)
129 PF13192 Thioredoxin_3: Thiore 95.7 0.015 3.2E-07 38.4 3.6 36 83-119 2-41 (76)
130 cd03006 PDI_a_EFP1_N PDIa fami 95.7 0.015 3.3E-07 41.8 3.8 39 83-121 32-76 (113)
131 cd02957 Phd_like Phosducin (Ph 95.6 0.019 4.1E-07 40.1 4.0 34 84-117 28-66 (113)
132 PF14595 Thioredoxin_9: Thiore 95.6 0.0058 1.3E-07 45.0 1.4 53 70-122 31-88 (129)
133 cd03042 GST_N_Zeta GST_N famil 95.6 0.024 5.2E-07 35.6 4.1 32 85-116 2-33 (73)
134 cd02997 PDI_a_PDIR PDIa family 95.5 0.025 5.3E-07 37.5 4.1 20 83-102 20-39 (104)
135 cd03044 GST_N_EF1Bgamma GST_N 95.5 0.027 5.8E-07 36.5 4.1 33 85-117 2-34 (75)
136 cd03020 DsbA_DsbC_DsbG DsbA fa 95.5 0.012 2.7E-07 44.8 2.7 34 81-114 78-113 (197)
137 TIGR02738 TrbB type-F conjugat 95.4 0.035 7.6E-07 42.0 5.0 38 80-117 50-91 (153)
138 cd03010 TlpA_like_DsbE TlpA-li 95.4 0.032 6.8E-07 38.9 4.4 41 83-123 28-72 (127)
139 cd02995 PDI_a_PDI_a'_C PDIa fa 95.4 0.027 5.9E-07 37.2 3.9 35 83-117 21-63 (104)
140 cd03008 TryX_like_RdCVF Trypar 95.3 0.028 6E-07 42.5 4.3 44 80-123 24-82 (146)
141 KOG3425 Uncharacterized conser 95.3 0.037 8.1E-07 41.8 4.8 48 70-117 14-76 (128)
142 PRK15412 thiol:disulfide inter 95.3 0.031 6.6E-07 42.5 4.5 39 83-121 71-112 (185)
143 cd03050 GST_N_Theta GST_N fami 95.2 0.045 9.8E-07 35.2 4.4 32 85-116 2-33 (76)
144 TIGR02739 TraF type-F conjugat 95.2 0.06 1.3E-06 44.4 6.1 49 69-117 139-191 (256)
145 PF13899 Thioredoxin_7: Thiore 95.0 0.044 9.4E-07 36.2 3.9 34 84-117 21-61 (82)
146 cd02964 TryX_like_family Trypa 94.9 0.048 1E-06 38.7 4.4 39 83-121 20-67 (132)
147 KOG0907 Thioredoxin [Posttrans 94.9 0.03 6.4E-07 40.2 3.3 41 82-122 22-68 (106)
148 cd03009 TryX_like_TryX_NRX Try 94.9 0.046 1E-06 38.4 4.2 38 83-120 21-67 (131)
149 TIGR00385 dsbE periplasmic pro 94.9 0.049 1.1E-06 40.8 4.5 36 83-118 66-104 (173)
150 PF04908 SH3BGR: SH3-binding, 94.9 0.028 6E-07 40.4 3.0 32 94-125 19-50 (99)
151 PRK13703 conjugal pilus assemb 94.8 0.089 1.9E-06 43.2 6.3 49 69-117 132-184 (248)
152 cd02950 TxlA TRX-like protein 94.8 0.046 9.9E-07 40.2 4.1 35 83-117 23-63 (142)
153 cd03076 GST_N_Pi GST_N family, 94.7 0.074 1.6E-06 34.4 4.5 34 83-116 1-34 (73)
154 PF13409 GST_N_2: Glutathione 94.7 0.036 7.7E-07 35.9 2.9 24 91-114 1-24 (70)
155 KOG0406 Glutathione S-transfer 94.7 0.055 1.2E-06 44.3 4.6 36 82-117 8-43 (231)
156 PRK11657 dsbG disulfide isomer 94.6 0.034 7.4E-07 44.9 3.2 32 83-114 120-155 (251)
157 cd02965 HyaE HyaE family; HyaE 94.5 0.073 1.6E-06 38.8 4.5 52 70-123 19-78 (111)
158 PRK03147 thiol-disulfide oxido 94.5 0.064 1.4E-06 39.0 4.2 42 81-122 62-110 (173)
159 TIGR02661 MauD methylamine deh 94.4 0.078 1.7E-06 40.5 4.7 33 83-115 77-113 (189)
160 COG2999 GrxB Glutaredoxin 2 [P 94.4 0.03 6.5E-07 45.3 2.4 35 86-120 3-37 (215)
161 PTZ00443 Thioredoxin domain-co 94.2 0.06 1.3E-06 43.3 3.8 42 82-123 54-101 (224)
162 COG0526 TrxA Thiol-disulfide i 94.2 0.067 1.5E-06 33.5 3.3 28 88-115 40-73 (127)
163 PF13905 Thioredoxin_8: Thiore 94.2 0.081 1.8E-06 34.9 3.9 41 84-124 5-53 (95)
164 PRK15113 glutathione S-transfe 94.2 0.1 2.2E-06 39.9 4.9 35 82-116 4-40 (214)
165 PF08534 Redoxin: Redoxin; In 94.1 0.098 2.1E-06 37.2 4.3 40 80-119 27-75 (146)
166 PRK00293 dipZ thiol:disulfide 94.0 0.12 2.7E-06 46.3 5.8 50 71-120 463-522 (571)
167 KOG0910 Thioredoxin-like prote 94.0 0.066 1.4E-06 41.4 3.5 52 72-123 51-110 (150)
168 TIGR01130 ER_PDI_fam protein d 94.0 0.14 2.9E-06 42.4 5.6 48 76-123 12-70 (462)
169 cd02982 PDI_b'_family Protein 93.9 0.08 1.7E-06 35.3 3.4 43 81-123 13-61 (103)
170 cd02970 PRX_like2 Peroxiredoxi 93.8 0.19 4.1E-06 35.2 5.4 35 83-117 26-68 (149)
171 cd02967 mauD Methylamine utili 93.8 0.068 1.5E-06 36.2 3.0 22 83-104 24-45 (114)
172 cd02960 AGR Anterior Gradient 93.8 0.11 2.3E-06 38.9 4.2 33 72-104 13-48 (130)
173 cd02987 Phd_like_Phd Phosducin 93.6 0.19 4.2E-06 38.5 5.5 45 72-116 71-124 (175)
174 cd03047 GST_N_2 GST_N family, 93.4 0.17 3.6E-06 32.3 4.2 32 85-116 2-33 (73)
175 PLN02378 glutathione S-transfe 93.3 0.096 2.1E-06 40.3 3.3 27 90-116 18-44 (213)
176 cd03011 TlpA_like_ScsD_MtbDsbE 93.0 0.088 1.9E-06 36.2 2.6 25 81-105 21-45 (123)
177 PLN02817 glutathione dehydroge 92.8 0.12 2.6E-06 42.0 3.5 42 71-116 56-97 (265)
178 TIGR00862 O-ClC intracellular 92.7 0.13 2.8E-06 41.5 3.5 28 89-116 16-43 (236)
179 PTZ00062 glutaredoxin; Provisi 92.5 0.21 4.6E-06 39.7 4.3 34 73-106 7-43 (204)
180 cd02992 PDI_a_QSOX PDIa family 92.3 0.2 4.4E-06 35.3 3.7 22 83-104 22-43 (114)
181 PHA03075 glutaredoxin-like pro 92.3 0.18 4E-06 37.9 3.6 33 82-114 3-35 (123)
182 cd03057 GST_N_Beta GST_N famil 92.1 0.29 6.4E-06 31.3 4.0 32 85-117 2-33 (77)
183 cd02988 Phd_like_VIAF Phosduci 92.1 0.32 6.9E-06 38.0 4.8 46 71-116 89-143 (192)
184 PF06110 DUF953: Eukaryotic pr 91.8 0.1 2.2E-06 38.6 1.7 45 71-115 8-67 (119)
185 PTZ00102 disulphide isomerase; 91.8 0.25 5.5E-06 41.6 4.3 41 82-122 51-100 (477)
186 cd03023 DsbA_Com1_like DsbA fa 91.6 0.18 3.8E-06 35.2 2.7 24 81-104 6-29 (154)
187 TIGR00424 APS_reduc 5'-adenyly 91.6 0.33 7.2E-06 43.1 4.9 36 83-118 374-416 (463)
188 cd03043 GST_N_1 GST_N family, 91.3 0.33 7.2E-06 31.4 3.6 30 88-117 6-35 (73)
189 PTZ00102 disulphide isomerase; 91.0 0.36 7.7E-06 40.7 4.4 37 83-119 378-422 (477)
190 cd02972 DsbA_family DsbA famil 90.9 0.22 4.7E-06 31.6 2.4 22 84-105 1-22 (98)
191 PLN02309 5'-adenylylsulfate re 90.9 0.33 7.2E-06 43.0 4.3 34 82-115 367-407 (457)
192 PTZ00056 glutathione peroxidas 90.8 0.31 6.6E-06 37.9 3.6 15 83-97 42-56 (199)
193 PLN02473 glutathione S-transfe 90.8 0.41 8.8E-06 36.1 4.2 33 84-116 3-35 (214)
194 cd03017 PRX_BCP Peroxiredoxin 90.6 0.42 9.1E-06 33.4 3.8 36 81-116 23-67 (140)
195 PF00578 AhpC-TSA: AhpC/TSA fa 90.2 0.37 8E-06 32.8 3.2 36 82-117 27-70 (124)
196 cd03065 PDI_b_Calsequestrin_N 90.0 0.46 9.9E-06 34.7 3.7 42 83-124 29-83 (120)
197 PRK10357 putative glutathione 88.9 0.64 1.4E-05 34.7 3.9 32 85-116 2-33 (202)
198 COG3118 Thioredoxin domain-con 88.8 0.71 1.5E-05 39.4 4.5 55 69-123 31-92 (304)
199 cd00340 GSH_Peroxidase Glutath 88.6 0.46 9.9E-06 34.6 2.8 14 84-98 26-39 (152)
200 COG0625 Gst Glutathione S-tran 88.5 0.8 1.7E-05 34.6 4.2 34 85-118 2-35 (211)
201 TIGR01130 ER_PDI_fam protein d 88.4 0.83 1.8E-05 37.8 4.6 35 83-117 367-410 (462)
202 cd03018 PRX_AhpE_like Peroxire 88.2 1 2.2E-05 31.8 4.4 34 82-115 29-71 (149)
203 cd02968 SCO SCO (an acronym fo 88.1 0.65 1.4E-05 32.5 3.3 17 82-98 24-41 (142)
204 cd02971 PRX_family Peroxiredox 88.0 0.99 2.1E-05 31.4 4.2 37 80-116 21-66 (140)
205 KOG2824 Glutaredoxin-related p 87.9 0.6 1.3E-05 39.4 3.5 46 81-126 130-181 (281)
206 cd02958 UAS UAS family; UAS is 87.9 2.3 4.9E-05 29.4 5.9 33 72-104 7-42 (114)
207 KOG2501 Thioredoxin, nucleored 87.7 0.98 2.1E-05 35.2 4.3 47 76-122 28-82 (157)
208 cd03012 TlpA_like_DipZ_like Tl 87.6 0.57 1.2E-05 32.8 2.7 20 83-102 26-45 (126)
209 cd03019 DsbA_DsbA DsbA family, 87.5 0.55 1.2E-05 34.0 2.7 23 81-103 16-38 (178)
210 PTZ00256 glutathione peroxidas 87.5 1 2.2E-05 34.1 4.2 30 85-114 46-82 (183)
211 cd03077 GST_N_Alpha GST_N fami 87.5 1.3 2.8E-05 29.1 4.3 34 84-117 2-35 (79)
212 cd03046 GST_N_GTT1_like GST_N 86.9 1.3 2.9E-05 27.8 4.0 31 85-116 2-32 (76)
213 TIGR03143 AhpF_homolog putativ 86.7 1.1 2.3E-05 39.7 4.5 52 71-122 357-413 (555)
214 TIGR03137 AhpC peroxiredoxin. 86.7 1.2 2.6E-05 34.0 4.2 37 80-116 30-75 (187)
215 PRK13972 GSH-dependent disulfi 86.5 1.3 2.8E-05 33.6 4.4 32 84-116 2-33 (215)
216 PF13462 Thioredoxin_4: Thiore 86.3 0.69 1.5E-05 32.9 2.6 37 81-117 13-57 (162)
217 PLN02399 phospholipid hydroper 86.3 1.4 3E-05 35.8 4.6 33 82-114 101-140 (236)
218 PRK09437 bcp thioredoxin-depen 86.0 1.5 3.3E-05 31.5 4.3 37 80-116 29-74 (154)
219 PLN02412 probable glutathione 85.9 1.2 2.7E-05 33.2 4.0 16 82-97 30-46 (167)
220 TIGR01262 maiA maleylacetoacet 85.7 0.87 1.9E-05 34.0 3.0 31 86-116 2-32 (210)
221 COG2143 Thioredoxin-related pr 85.0 0.78 1.7E-05 36.5 2.5 30 73-102 33-64 (182)
222 cd03015 PRX_Typ2cys Peroxiredo 84.6 1.6 3.4E-05 32.4 4.0 36 81-116 29-73 (173)
223 TIGR02540 gpx7 putative glutat 84.6 0.91 2E-05 33.0 2.6 19 81-99 22-41 (153)
224 PRK11752 putative S-transferas 84.4 1.6 3.5E-05 35.0 4.2 38 78-116 39-82 (264)
225 TIGR01626 ytfJ_HI0045 conserve 83.9 1.4 3.1E-05 34.6 3.6 42 81-122 60-110 (184)
226 smart00594 UAS UAS domain. 82.9 4.9 0.00011 28.5 5.8 33 72-104 17-52 (122)
227 cd02969 PRX_like1 Peroxiredoxi 82.3 2.4 5.2E-05 31.2 4.1 34 83-116 28-68 (171)
228 KOG1422 Intracellular Cl- chan 79.0 3 6.5E-05 34.2 3.9 32 91-122 20-53 (221)
229 COG3019 Predicted metal-bindin 78.9 3.5 7.6E-05 32.0 4.1 43 80-122 24-66 (149)
230 cd03014 PRX_Atyp2cys Peroxired 77.8 4.4 9.6E-05 28.5 4.1 36 81-116 26-68 (143)
231 cd03016 PRX_1cys Peroxiredoxin 77.3 4 8.7E-05 31.5 4.1 36 82-117 26-70 (203)
232 PRK13190 putative peroxiredoxi 77.1 4 8.6E-05 31.6 4.0 37 81-117 27-72 (202)
233 PF01323 DSBA: DSBA-like thior 74.8 2.8 6.1E-05 30.7 2.5 37 83-119 1-42 (193)
234 PLN02395 glutathione S-transfe 73.4 6.8 0.00015 29.4 4.3 32 84-116 3-34 (215)
235 PF04134 DUF393: Protein of un 70.4 6.9 0.00015 26.9 3.5 28 87-114 2-31 (114)
236 KOG0908 Thioredoxin-like prote 69.7 4.6 0.0001 34.3 2.9 38 83-120 24-66 (288)
237 TIGR03865 PQQ_CXXCW PQQ-depend 69.7 13 0.00027 28.1 5.1 41 80-121 115-155 (162)
238 PF09822 ABC_transp_aux: ABC-t 69.4 8.4 0.00018 30.6 4.3 55 69-123 14-79 (271)
239 PTZ00137 2-Cys peroxiredoxin; 68.7 11 0.00023 31.2 4.8 41 76-116 93-142 (261)
240 PRK14018 trifunctional thiored 67.7 5 0.00011 36.3 2.9 21 84-104 60-80 (521)
241 PF03227 GILT: Gamma interfero 67.0 5.8 0.00013 28.0 2.6 21 83-103 2-24 (108)
242 cd03078 GST_N_Metaxin1_like GS 65.1 8.1 0.00018 25.4 2.9 25 90-114 14-38 (73)
243 KOG4244 Failed axon connection 61.8 6.6 0.00014 33.3 2.4 24 92-115 61-84 (281)
244 cd02974 AhpF_NTD_N Alkyl hydro 59.9 15 0.00032 25.7 3.6 34 71-105 10-43 (94)
245 PRK13189 peroxiredoxin; Provis 59.6 17 0.00036 28.8 4.2 38 80-117 34-80 (222)
246 cd03022 DsbA_HCCA_Iso DsbA fam 59.6 9.5 0.00021 27.9 2.7 27 84-110 1-31 (192)
247 KOG0190 Protein disulfide isom 58.2 5 0.00011 36.3 1.1 27 83-109 387-413 (493)
248 PRK00522 tpx lipid hydroperoxi 58.1 19 0.00041 26.8 4.1 17 83-99 47-64 (167)
249 cd03025 DsbA_FrnE_like DsbA fa 57.6 7.3 0.00016 28.6 1.8 21 83-103 2-22 (193)
250 KOG0912 Thiol-disulfide isomer 57.1 12 0.00026 32.8 3.2 31 75-105 6-38 (375)
251 PRK10954 periplasmic protein d 56.5 7.4 0.00016 30.0 1.7 20 81-100 38-57 (207)
252 PF02798 GST_N: Glutathione S- 56.5 18 0.00038 23.4 3.3 31 84-116 3-33 (76)
253 cd01520 RHOD_YbbB Member of th 56.4 36 0.00078 24.0 5.2 45 77-123 82-126 (128)
254 cd03021 DsbA_GSTK DsbA family, 56.0 14 0.00031 28.2 3.2 32 83-114 2-39 (209)
255 PF03190 Thioredox_DsbH: Prote 55.6 16 0.00036 28.4 3.5 40 81-120 37-86 (163)
256 PRK13599 putative peroxiredoxi 54.4 17 0.00037 28.7 3.5 37 80-116 27-72 (215)
257 TIGR01689 EcbF-BcbF capsule bi 53.4 42 0.00091 24.7 5.2 46 71-116 29-87 (126)
258 COG1651 DsbG Protein-disulfide 53.4 11 0.00023 29.3 2.1 23 83-105 121-143 (244)
259 cd03079 GST_N_Metaxin2 GST_N f 53.4 21 0.00046 24.0 3.3 24 91-114 16-39 (74)
260 PTZ00057 glutathione s-transfe 53.1 31 0.00068 26.0 4.7 34 83-116 4-37 (205)
261 PRK15000 peroxidase; Provision 52.7 27 0.00058 27.1 4.3 18 80-97 33-52 (200)
262 cd01444 GlpE_ST GlpE sulfurtra 52.7 60 0.0013 20.9 5.7 45 73-119 48-92 (96)
263 TIGR03140 AhpF alkyl hydropero 52.6 20 0.00042 31.4 3.9 34 71-105 10-43 (515)
264 PRK10382 alkyl hydroperoxide r 52.1 24 0.00052 27.3 3.9 36 81-116 31-75 (187)
265 PRK10606 btuE putative glutath 50.9 13 0.00028 28.9 2.2 16 82-97 27-42 (183)
266 PLN02919 haloacid dehalogenase 50.8 13 0.00028 36.1 2.7 21 83-103 423-443 (1057)
267 cd00079 HELICc Helicase superf 50.6 71 0.0015 21.1 5.7 51 72-123 18-69 (131)
268 KOG0191 Thioredoxin/protein di 48.8 19 0.00041 30.3 3.1 25 79-103 46-70 (383)
269 PF06053 DUF929: Domain of unk 48.7 13 0.00028 30.8 2.1 24 84-107 62-89 (249)
270 COG4052 Uncharacterized protei 48.6 7.5 0.00016 32.9 0.6 73 48-120 94-178 (310)
271 TIGR03759 conj_TIGR03759 integ 48.6 49 0.0011 26.8 5.3 36 80-115 108-143 (200)
272 COG1631 RPL42A Ribosomal prote 48.1 5 0.00011 29.0 -0.4 9 89-97 8-16 (94)
273 COG1651 DsbG Protein-disulfide 47.6 22 0.00048 27.4 3.1 24 81-104 85-108 (244)
274 cd03024 DsbA_FrnE DsbA family, 47.3 12 0.00026 27.7 1.5 20 84-103 1-20 (201)
275 PTZ00253 tryparedoxin peroxida 46.5 29 0.00062 26.5 3.6 37 81-117 36-81 (199)
276 PRK15317 alkyl hydroperoxide r 46.5 23 0.0005 30.9 3.4 34 71-105 10-43 (517)
277 COG2761 FrnE Predicted dithiol 45.9 9.9 0.00022 31.1 0.9 23 83-105 7-29 (225)
278 PRK13191 putative peroxiredoxi 45.7 30 0.00064 27.3 3.6 38 81-118 33-79 (215)
279 cd03075 GST_N_Mu GST_N family, 44.4 48 0.001 21.7 4.0 24 93-116 10-33 (82)
280 PF09413 DUF2007: Domain of un 43.5 23 0.00051 22.3 2.3 30 85-114 2-31 (67)
281 KOG0190 Protein disulfide isom 42.8 41 0.00089 30.6 4.4 45 72-116 32-85 (493)
282 cd08183 Fe-ADH2 Iron-containin 41.6 63 0.0014 27.2 5.2 38 82-119 23-60 (374)
283 TIGR02263 benz_CoA_red_C benzo 40.8 66 0.0014 27.4 5.2 53 72-124 310-369 (380)
284 cd01528 RHOD_2 Member of the R 40.0 1.1E+02 0.0024 20.2 6.0 40 81-122 58-97 (101)
285 KOG0191 Thioredoxin/protein di 39.6 21 0.00046 30.0 2.0 24 80-103 162-185 (383)
286 PF11287 DUF3088: Protein of u 39.3 31 0.00068 25.6 2.6 15 91-105 23-37 (112)
287 PRK04195 replication factor C 38.8 81 0.0018 27.5 5.5 65 50-114 3-72 (482)
288 PF08874 DUF1835: Domain of un 38.5 97 0.0021 21.6 5.0 43 72-115 77-123 (124)
289 PF15643 Tox-PL-2: Papain fold 38.0 38 0.00082 24.8 2.8 26 91-116 20-46 (100)
290 cd01523 RHOD_Lact_B Member of 37.3 1.1E+02 0.0024 20.1 4.9 41 76-119 56-96 (100)
291 KOG1734 Predicted RING-contain 36.8 20 0.00043 30.9 1.4 15 85-99 266-280 (328)
292 cd01521 RHOD_PspE2 Member of t 36.6 1.3E+02 0.0028 20.4 5.3 43 77-121 60-103 (110)
293 PF02780 Transketolase_C: Tran 35.8 47 0.001 23.2 3.0 35 80-114 8-43 (124)
294 PRK10542 glutathionine S-trans 35.6 52 0.0011 24.2 3.4 23 94-116 10-32 (201)
295 cd01524 RHOD_Pyr_redox Member 35.4 1.2E+02 0.0027 19.5 5.3 43 73-118 43-85 (90)
296 TIGR01162 purE phosphoribosyla 34.4 43 0.00094 26.0 2.9 41 84-124 3-45 (156)
297 PF06764 DUF1223: Protein of u 34.2 40 0.00087 26.9 2.7 23 84-106 2-24 (202)
298 cd02978 KaiB_like KaiB-like fa 33.8 46 0.00099 22.7 2.6 25 99-123 23-50 (72)
299 COG3011 Predicted thiol-disulf 31.7 1.3E+02 0.0027 23.0 4.9 35 81-115 7-43 (137)
300 cd01447 Polysulfide_ST Polysul 31.5 79 0.0017 20.5 3.5 39 80-120 60-98 (103)
301 smart00450 RHOD Rhodanese Homo 31.5 1.3E+02 0.0028 18.6 4.8 31 77-108 52-82 (100)
302 KOG4277 Uncharacterized conser 31.4 16 0.00035 32.2 0.0 27 83-109 46-72 (468)
303 cd01518 RHOD_YceA Member of th 31.3 91 0.002 20.6 3.8 36 79-116 59-94 (101)
304 cd03013 PRX5_like Peroxiredoxi 30.3 68 0.0015 23.6 3.2 36 80-115 28-74 (155)
305 PF06792 UPF0261: Uncharacteri 30.2 21 0.00046 31.6 0.6 42 84-126 190-232 (403)
306 cd04911 ACT_AKiii-YclM-BS_1 AC 29.9 58 0.0013 22.3 2.6 20 92-111 15-34 (76)
307 TIGR03190 benz_CoA_bzdN benzoy 29.5 1.1E+02 0.0023 26.1 4.7 51 72-123 302-359 (377)
308 TIGR03521 GldG gliding-associa 29.0 89 0.0019 28.1 4.3 53 68-120 36-98 (552)
309 KOG4023 Uncharacterized conser 28.4 1E+02 0.0022 22.8 3.8 28 97-124 23-50 (108)
310 PF14437 MafB19-deam: MafB19-l 27.8 70 0.0015 24.7 3.0 34 81-114 99-135 (146)
311 PRK00758 GMP synthase subunit 27.7 1.5E+02 0.0033 22.0 4.8 34 87-120 4-37 (184)
312 cd01448 TST_Repeat_1 Thiosulfa 27.7 2E+02 0.0043 19.5 5.6 39 80-119 78-116 (122)
313 TIGR00778 ahpD_dom alkylhydrop 27.3 69 0.0015 18.8 2.4 20 90-109 19-39 (50)
314 PHA02544 44 clamp loader, smal 26.6 1.5E+02 0.0032 23.7 4.8 65 49-115 9-77 (316)
315 cd08185 Fe-ADH1 Iron-containin 26.4 1.5E+02 0.0033 24.9 5.1 37 82-118 26-67 (380)
316 COG4232 Thiol:disulfide interc 26.3 84 0.0018 29.2 3.7 54 72-125 462-528 (569)
317 PF11009 DUF2847: Protein of u 26.0 1.4E+02 0.003 21.6 4.1 42 79-120 17-65 (105)
318 cd08186 Fe-ADH8 Iron-containin 25.9 1.5E+02 0.0032 25.1 4.9 37 82-118 27-68 (383)
319 KOG0867 Glutathione S-transfer 25.0 1.3E+02 0.0028 23.6 4.1 34 83-116 2-35 (226)
320 PF00731 AIRC: AIR carboxylase 24.8 52 0.0011 25.2 1.8 37 88-124 9-47 (150)
321 cd00755 YgdL_like Family of ac 24.8 1.2E+02 0.0026 24.3 4.0 31 86-116 150-182 (231)
322 cd01449 TST_Repeat_2 Thiosulfa 24.6 2E+02 0.0043 19.2 4.6 28 80-108 77-104 (118)
323 COG5427 Uncharacterized membra 24.5 1.1E+02 0.0025 28.4 4.1 36 73-112 610-645 (684)
324 PF03470 zf-XS: XS zinc finger 24.2 22 0.00047 22.3 -0.3 6 92-97 1-6 (43)
325 PF07796 DUF1638: Protein of u 23.7 2.3E+02 0.0049 21.1 5.1 77 42-124 81-162 (166)
326 PTZ00323 NAD+ synthase; Provis 23.6 69 0.0015 26.9 2.5 26 96-121 95-120 (294)
327 PF10087 DUF2325: Uncharacteri 23.3 2.4E+02 0.0053 19.0 5.1 42 72-113 39-82 (97)
328 PRK00440 rfc replication facto 23.1 2.5E+02 0.0053 22.1 5.4 54 50-105 6-62 (319)
329 cd08486 PBP2_CbnR The C-termin 22.7 2.8E+02 0.006 19.4 5.2 37 79-115 96-134 (198)
330 PF01522 Polysacc_deac_1: Poly 22.4 61 0.0013 21.8 1.6 37 72-109 86-122 (123)
331 cd01526 RHOD_ThiF Member of th 22.2 2.5E+02 0.0054 19.3 4.8 41 80-121 71-111 (122)
332 PF00403 HMA: Heavy-metal-asso 22.1 1E+02 0.0022 18.7 2.5 25 90-114 7-33 (62)
333 PRK15454 ethanol dehydrogenase 21.8 1.7E+02 0.0037 25.1 4.5 37 82-118 50-90 (395)
334 cd08179 NADPH_BDH NADPH-depend 21.4 1.8E+02 0.004 24.4 4.6 27 92-118 38-65 (375)
335 PRK10624 L-1,2-propanediol oxi 21.4 2.1E+02 0.0045 24.2 4.9 37 82-118 31-71 (382)
336 KOG0913 Thiol-disulfide isomer 21.4 57 0.0012 27.3 1.5 44 76-119 35-85 (248)
337 cd08170 GlyDH Glycerol dehydro 21.3 1.8E+02 0.0039 24.1 4.5 45 73-119 16-62 (351)
338 COG1775 HgdB Benzoyl-CoA reduc 21.3 1.2E+02 0.0025 27.0 3.5 53 72-124 308-367 (379)
339 cd01534 4RHOD_Repeat_3 Member 20.9 2.3E+02 0.005 18.4 4.2 38 80-120 55-92 (95)
340 PF01939 DUF91: Protein of unk 20.7 3.8E+02 0.0082 21.9 6.1 61 46-113 149-211 (228)
341 PF07728 AAA_5: AAA domain (dy 20.7 2.2E+02 0.0048 19.6 4.3 37 83-119 1-37 (139)
342 PLN02331 phosphoribosylglycina 20.5 2.7E+02 0.0058 22.1 5.1 48 63-114 5-57 (207)
343 KOG2454 Betaine aldehyde dehyd 20.3 68 0.0015 29.3 1.9 48 76-123 211-264 (583)
344 cd08176 LPO Lactadehyde:propan 20.2 1.9E+02 0.004 24.4 4.4 38 82-119 29-70 (377)
345 PRK03600 nrdI ribonucleotide r 20.2 3.3E+02 0.0072 20.0 5.3 54 70-123 61-120 (134)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.58 E-value=2.2e-15 Score=106.02 Aligned_cols=48 Identities=38% Similarity=0.570 Sum_probs=44.6
Q ss_pred HHhhhcCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHH
Q 033133 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLS 122 (126)
Q Consensus 75 V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~ 122 (126)
|+++|++++|+||+|+|||||.+||++|+++|++|+++|||+++++.+
T Consensus 1 ~~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~ 48 (99)
T TIGR02189 1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKD 48 (99)
T ss_pred ChhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHH
Confidence 578899999999999999999999999999999999999999877554
No 2
>PHA03050 glutaredoxin; Provisional
Probab=99.56 E-value=6.7e-15 Score=105.69 Aligned_cols=54 Identities=15% Similarity=0.303 Sum_probs=48.0
Q ss_pred HHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhcCC---CcEEEEccC---CchhHHHhh
Q 033133 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGV---EPLVIELDE---MGMRLSVLI 125 (126)
Q Consensus 72 ~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~gV---~y~vIDID~---~~ea~~emi 125 (126)
+++|+++|++++|+||+++|||||.+||++|+++|+ +|+++|||+ .++.+++|.
T Consensus 3 ~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~ 62 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFE 62 (108)
T ss_pred HHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHH
Confidence 689999999999999999999999999999999999 799999997 344556554
No 3
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.55 E-value=1e-14 Score=102.25 Aligned_cols=54 Identities=28% Similarity=0.375 Sum_probs=50.4
Q ss_pred HHHHHhhhcCCCEEEEec-----CCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 72 EESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 72 ~~~V~~lI~~~~VvVYSK-----s~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
.++|++++++++|+||+| +|||||.+||++|+++|++|+++||+++++.+++|.
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~ 60 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIK 60 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 478999999999999999 899999999999999999999999998888888775
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=99.50 E-value=4.3e-14 Score=103.44 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=52.0
Q ss_pred hHHHHHHhhhcCCCEEEEecC-----CCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 70 RLEESVKKTVSENPVVVYSKT-----WCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 70 ~~~~~V~~lI~~~~VvVYSKs-----~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
.+.++|+++|++++|+||+|. |||||++||++|+++|++|.++|++++++.+++|.
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~ 63 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELP 63 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHH
Confidence 468999999999999999995 99999999999999999999999999988877765
No 5
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=6.9e-14 Score=100.98 Aligned_cols=51 Identities=47% Similarity=0.714 Sum_probs=47.0
Q ss_pred HHHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhH
Q 033133 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRL 121 (126)
Q Consensus 71 ~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~ 121 (126)
..++|++++++++|+||||+|||||+++|.+|.+.++++.++|||++++..
T Consensus 3 ~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~ 53 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGS 53 (104)
T ss_pred HHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcH
Confidence 367899999999999999999999999999999999999999999986543
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.48 E-value=5.2e-14 Score=96.73 Aligned_cols=51 Identities=31% Similarity=0.466 Sum_probs=47.1
Q ss_pred HHhhhcCCCEEEEec-----CCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 75 VKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 75 V~~lI~~~~VvVYSK-----s~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|+++|++++|+||+| +|||||.+||++|+++|++|+++|++++++..++|.
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~ 56 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLK 56 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHH
Confidence 468899999999999 599999999999999999999999999988888775
No 7
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.35 E-value=8.8e-13 Score=83.42 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=39.8
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|++|++++||+|.++|++|+++|++|+++||+.+++++++|.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~ 42 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELK 42 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHH
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHH
Confidence 789999999999999999999999999999999988888875
No 8
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2e-12 Score=88.12 Aligned_cols=36 Identities=33% Similarity=0.572 Sum_probs=34.8
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCc
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG 118 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ 118 (126)
.|+||++++||||.+||++|+++|++|+++|++.++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~ 37 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDE 37 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCc
Confidence 689999999999999999999999999999999887
No 9
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.33 E-value=1.9e-12 Score=88.28 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=40.5
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
+|+||++++||||+++|++|+++|++|+++|+++++++++++.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~ 44 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLR 44 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHH
Confidence 6899999999999999999999999999999999998888765
No 10
>PTZ00062 glutaredoxin; Provisional
Probab=99.32 E-value=3.2e-12 Score=101.23 Aligned_cols=58 Identities=16% Similarity=0.262 Sum_probs=53.6
Q ss_pred cchHHHHHHhhhcCCCEEEEec-----CCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 68 GSRLEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 68 g~~~~~~V~~lI~~~~VvVYSK-----s~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
++...++++++|++++|+||+| ++||||+++|++|+++|++|.++||+++++.+++|.
T Consensus 99 ~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~ 161 (204)
T PTZ00062 99 SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELK 161 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHH
Confidence 4467899999999999999999 699999999999999999999999999988888775
No 11
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.32 E-value=3.3e-12 Score=85.40 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=38.8
Q ss_pred hhcCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchh
Q 033133 78 TVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMR 120 (126)
Q Consensus 78 lI~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea 120 (126)
.-++++|+||+++|||||++||++|+++|++|+.+|++++++.
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~ 46 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARG 46 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHH
Confidence 3467899999999999999999999999999999999987554
No 12
>PRK10638 glutaredoxin 3; Provisional
Probab=99.31 E-value=3.6e-12 Score=85.63 Aligned_cols=44 Identities=25% Similarity=0.398 Sum_probs=40.4
Q ss_pred CCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
.+|++|++++||||++|+++|+++|++|+++|+|++++..+++.
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~ 45 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMI 45 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHH
Confidence 47999999999999999999999999999999999887777664
No 13
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.30 E-value=4.3e-12 Score=82.15 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=39.8
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
+|+||++++||||.+|+++|+++|++|+++||+.+++..+++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~ 43 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMI 43 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHH
Confidence 5899999999999999999999999999999999888877764
No 14
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.28 E-value=5.2e-12 Score=82.67 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=40.5
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
+|+||++++||+|++|+++|+++|++|+++|++++++..+++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~ 44 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELE 44 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHH
Confidence 6899999999999999999999999999999999998888775
No 15
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.26 E-value=9.1e-12 Score=81.14 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=35.0
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCch
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGM 119 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~e 119 (126)
+|+||++++||||.+||++|+++|++|+++|++++++
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~ 38 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDIT 38 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChh
Confidence 6999999999999999999999999999999998763
No 16
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.25 E-value=9.4e-12 Score=81.57 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=39.3
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|+||++++||||++||++|+++|++|+++||+++++.++++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~ 42 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVK 42 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHH
Confidence 579999999999999999999999999999999998888764
No 17
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.23 E-value=1.3e-11 Score=81.34 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=39.3
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|+||++++||||.+|+++|+++|++|+.+|++.+++.++++.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~ 42 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMM 42 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHH
Confidence 689999999999999999999999999999999988888764
No 18
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.19 E-value=3.8e-11 Score=74.73 Aligned_cols=43 Identities=37% Similarity=0.480 Sum_probs=39.5
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
+|++|++++||+|++++.+|++++++|..+|++++++..++|.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~ 43 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELK 43 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHH
Confidence 5899999999999999999999999999999999887777664
No 19
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.17 E-value=4e-11 Score=80.68 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=38.2
Q ss_pred CEEEEecCCCchHHHHHHHHHh-----cCCCcEEEEccCCchhHHHhh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKR-----LGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~-----~gV~y~vIDID~~~ea~~emi 125 (126)
+|+||+++|||||.+|+++|++ .+++|+++|+++++.+.++|.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~ 49 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLE 49 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHH
Confidence 6899999999999999999999 899999999998766565553
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.11 E-value=1e-10 Score=79.76 Aligned_cols=41 Identities=27% Similarity=0.478 Sum_probs=33.9
Q ss_pred EEEEecCCCchHHHHHHHHHhcC-----CCcEEEEccCCchhHHHh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLG-----VEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~g-----V~y~vIDID~~~ea~~em 124 (126)
|+||+++|||||.+||++|++++ ++|+.+|++.+....+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l 47 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADL 47 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHH
Confidence 78999999999999999999984 678999998655444444
No 21
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.05 E-value=2.2e-10 Score=97.94 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=37.5
Q ss_pred CCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHH
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLS 122 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~ 122 (126)
++|+||+++|||||++||++|+++||+|+++|||+++++.+
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~ 42 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAE 42 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHH
Confidence 57999999999999999999999999999999998876544
No 22
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.02 E-value=5.2e-10 Score=71.74 Aligned_cols=42 Identities=21% Similarity=0.513 Sum_probs=38.2
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~em 124 (126)
+|++|+++|||+|++++.+|++.+++|+.+|+|++++..+++
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~ 42 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRV 42 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHH
Confidence 488999999999999999999999999999999887766654
No 23
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.01 E-value=5.2e-10 Score=70.08 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=38.1
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~em 124 (126)
+|++|+.+|||+|++++.+|++.+++|..+|++++++..+++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~ 42 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEV 42 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHH
Confidence 478999999999999999999999999999999888776654
No 24
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.99 E-value=8.1e-10 Score=72.17 Aligned_cols=37 Identities=51% Similarity=0.918 Sum_probs=34.4
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCch
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGM 119 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~e 119 (126)
+|++|+++|||+|.+++++|++++++|+.+|++.+++
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~ 37 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHED 37 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 5899999999999999999999999999999987754
No 25
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.98 E-value=5.9e-10 Score=77.88 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=39.0
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|+||++++||+|++|+++|+++|++|+++|+.+++...++|.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~ 42 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELK 42 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHH
Confidence 579999999999999999999999999999999888877775
No 26
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.96 E-value=1.1e-09 Score=71.39 Aligned_cols=35 Identities=40% Similarity=0.779 Sum_probs=32.3
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCC--cEEEEccCCc
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVE--PLVIELDEMG 118 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~--y~vIDID~~~ 118 (126)
|++|+++|||||++++++|++++++ |+++++|.++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~ 37 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLS 37 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCC
Confidence 6899999999999999999999999 9999998764
No 27
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.93 E-value=1.2e-09 Score=78.05 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=38.9
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|.||++++||+|++|+++|+++|++|+++|+.+++...++|.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~ 42 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELK 42 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHH
Confidence 579999999999999999999999999999999988887764
No 28
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.90 E-value=3.1e-09 Score=66.57 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=37.9
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~em 124 (126)
+|++|+.+|||+|.+++.+|++.+++|..+|+|.+++..+++
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~ 42 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEEL 42 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHH
Confidence 489999999999999999999999999999999887766654
No 29
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.88 E-value=2.8e-09 Score=80.82 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=40.6
Q ss_pred CEEEEecC------CCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 83 PVVVYSKT------WCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 83 ~VvVYSKs------~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
+|+||+++ +||||.+||++|++++|+|+++||+.+++.+++|.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~ 49 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELR 49 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHH
Confidence 58999999 99999999999999999999999999999888875
No 30
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.87 E-value=3.3e-09 Score=78.15 Aligned_cols=42 Identities=7% Similarity=0.148 Sum_probs=39.9
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|+||++++||+|++|+++|+++|++|+++|+.+++...++|.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~ 43 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIK 43 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHH
Confidence 789999999999999999999999999999999999888875
No 31
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.79 E-value=7.8e-09 Score=74.02 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=39.3
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|.||+.++||+|++|+++|+++|++|+++|+.+++...++|.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~ 42 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELL 42 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHH
Confidence 579999999999999999999999999999999998888875
No 32
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.78 E-value=6.6e-09 Score=66.12 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=35.1
Q ss_pred CEEEEecCCCchHHHHHHHHHhc-----CCCcEEEEccCCchhHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~-----gV~y~vIDID~~~ea~~e 123 (126)
+|++|+++|||||.+++.+|++. ++++..+|+|++++..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~ 47 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADE 47 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHH
Confidence 58899999999999999999876 688899999988775544
No 33
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.74 E-value=1.7e-08 Score=72.20 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=39.1
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|.||+.++||+|++|+++|+++|++|+++|+.+++...++|.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~ 43 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELK 43 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHH
Confidence 689999999999999999999999999999999888877764
No 34
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.61 E-value=5.7e-08 Score=71.88 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=39.3
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|+||+.++|++|++|+++|+++|++|+++|+.+++...+++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~ 43 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELK 43 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHH
Confidence 789999999999999999999999999999999988887764
No 35
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.61 E-value=6e-08 Score=71.81 Aligned_cols=42 Identities=10% Similarity=0.184 Sum_probs=39.1
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|.||+.++|++|++|+++|+++|++|+++|+.+++-..+++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~ 43 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEIL 43 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHH
Confidence 789999999999999999999999999999999888877764
No 36
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.46 E-value=3e-07 Score=60.67 Aligned_cols=41 Identities=7% Similarity=0.138 Sum_probs=35.0
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~em 124 (126)
+.+|+.++||||.+++.+|+++|++|++++++..+...+++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~ 42 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKF 42 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHH
Confidence 57999999999999999999999999999997654444443
No 37
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.46 E-value=2.3e-07 Score=66.14 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=38.3
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|+||+.++|+.|++|+++|+++|++|+++|+.++|-..++|.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~ 42 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLE 42 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHH
Confidence 579999999999999999999999999999999887776664
No 38
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.35 E-value=6.6e-07 Score=61.86 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=44.7
Q ss_pred hHHHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhc-----CCCcEEEEccCCchhHHH
Q 033133 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 70 ~~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~-----gV~y~vIDID~~~ea~~e 123 (126)
+..+.++++-+.-.|.+|..+|||||..+++++++. ++++.++|+|+.++.+++
T Consensus 2 ~~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~ 60 (89)
T cd03026 2 DLLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEE 60 (89)
T ss_pred hHHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHH
Confidence 346777877777799999999999999999888765 688999999988876554
No 39
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.32 E-value=7.6e-07 Score=63.23 Aligned_cols=53 Identities=26% Similarity=0.375 Sum_probs=39.8
Q ss_pred HHH-HHHhhhcCCCEEEE-ecCCCchHHHHHHHHHhcC-----CCcEEEEccCCchhHHH
Q 033133 71 LEE-SVKKTVSENPVVVY-SKTWCSYSSEVKLLFKRLG-----VEPLVIELDEMGMRLSV 123 (126)
Q Consensus 71 ~~~-~V~~lI~~~~VvVY-SKs~CPYC~kAK~LL~~~g-----V~y~vIDID~~~ea~~e 123 (126)
..+ +.+++.+..+++|| +++|||+|+.++.+|++.. +.+..+|+|+.++..++
T Consensus 11 ~~~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~ 70 (113)
T cd02975 11 LKEEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEK 70 (113)
T ss_pred HHHHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHH
Confidence 344 56667777777776 7899999999999987654 46788888887765543
No 40
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.30 E-value=1.3e-06 Score=56.82 Aligned_cols=34 Identities=18% Similarity=0.469 Sum_probs=31.6
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
++.+|+...||||++++.+|..+|++|+++++|.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~ 34 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNP 34 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCc
Confidence 5789999999999999999999999999998864
No 41
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.27 E-value=1.4e-06 Score=63.08 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=38.5
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
.|+||+.+.|+.|++|+++|+++|++|+++|+-++|-..+++.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~ 43 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLR 43 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHH
Confidence 4789999999999999999999999999999988877666653
No 42
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.23 E-value=1.7e-06 Score=56.08 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=31.8
Q ss_pred CEEEEecCCCchHHHHHHHHHh----cC--CCcEEEEccCCchhHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKR----LG--VEPLVIELDEMGMRLSV 123 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~----~g--V~y~vIDID~~~ea~~e 123 (126)
.|++|+++|||+|.+++..|++ .+ +.+..+|++++++..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~ 48 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAME 48 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHH
Confidence 4789999999999999999864 34 45677888777766544
No 43
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.20 E-value=2.7e-06 Score=51.52 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=31.8
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccCCch
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGM 119 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~e 119 (126)
.+|+.++||+|.+++.+|+.+|++|++++++..++
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 36 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEG 36 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 58999999999999999999999999999986544
No 44
>PHA02125 thioredoxin-like protein
Probab=98.12 E-value=4.1e-06 Score=55.32 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=27.0
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMR 120 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea 120 (126)
|++|+.+|||+|++++..|++..+.+..+|.|+.++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~~~~~vd~~~~~~l 38 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEYTYVDVDTDEGVEL 38 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhheEEeeeCCCCHHH
Confidence 7899999999999999999876444434444444443
No 45
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.07 E-value=7.5e-06 Score=55.19 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=31.9
Q ss_pred CEEEEecCCCchHHHHHHHHHhcC----CCcEEEEccCCchhHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLG----VEPLVIELDEMGMRLS 122 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~g----V~y~vIDID~~~ea~~ 122 (126)
+|++|+|++|+.|..|+.+|.+.. ++.+.+||+++++-.+
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~ 44 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFE 44 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHH
Confidence 489999999999999999999654 5568999998776443
No 46
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.06 E-value=8.5e-06 Score=52.54 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=30.4
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccCC
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~ 117 (126)
++|+..+||||.+++-+|+++|++|+.+++|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~ 34 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK 34 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 589999999999999999999999999988753
No 47
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.96 E-value=1.5e-05 Score=51.10 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=30.9
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccCCc
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG 118 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ 118 (126)
.+|+..+||||++++-+|..+|++|+.++++..+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~ 35 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD 35 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc
Confidence 4899999999999999999999999999988553
No 48
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.95 E-value=1.2e-05 Score=53.44 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=29.4
Q ss_pred CEEEEecCCCchHHHH----HHHHHhcCCCcEEEEccCCch
Q 033133 83 PVVVYSKTWCSYSSEV----KLLFKRLGVEPLVIELDEMGM 119 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kA----K~LL~~~gV~y~vIDID~~~e 119 (126)
.|.+|+ +|||.|..+ +++++++|++++++++|..++
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~ 41 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE 41 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH
Confidence 366777 999999999 668888999999999985443
No 49
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.3e-05 Score=57.33 Aligned_cols=57 Identities=21% Similarity=0.371 Sum_probs=51.5
Q ss_pred hHHHHHHhhhcCCCEEEEec-----CCCchHHHHHHHHHhcC-CCcEEEEccCCchhHHHhhC
Q 033133 70 RLEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLG-VEPLVIELDEMGMRLSVLIR 126 (126)
Q Consensus 70 ~~~~~V~~lI~~~~VvVYSK-----s~CPYC~kAK~LL~~~g-V~y~vIDID~~~ea~~emi~ 126 (126)
...+++++.|++++|++|-| +-|.|..+|-++|...| ++|..+||=.++|-++.+.+
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~ 65 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKE 65 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHh
Confidence 46789999999999999998 55999999999999999 89999999999998887653
No 50
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=97.90 E-value=1.9e-05 Score=50.30 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=30.6
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~ 117 (126)
+++|+.++||+|++++.+|+.+|++|+.+++|..
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~ 34 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD 34 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC
Confidence 3689999999999999999999999999888743
No 51
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.89 E-value=4.3e-05 Score=55.38 Aligned_cols=45 Identities=9% Similarity=0.208 Sum_probs=32.0
Q ss_pred HHHhhhcC-CC-EEEEecCCCchHHHHHHHH----HhcCCCcEEEEccCCc
Q 033133 74 SVKKTVSE-NP-VVVYSKTWCSYSSEVKLLF----KRLGVEPLVIELDEMG 118 (126)
Q Consensus 74 ~V~~lI~~-~~-VvVYSKs~CPYC~kAK~LL----~~~gV~y~vIDID~~~ 118 (126)
..++.+++ .. |+.|+++|||||+++.-.| ++.++++..+|+|.++
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~ 65 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNG 65 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCcc
Confidence 34444444 34 7789999999999865554 5556778899998654
No 52
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.80 E-value=3.5e-05 Score=48.58 Aligned_cols=32 Identities=13% Similarity=0.343 Sum_probs=29.6
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
.+|+.++||||++++-+|+.+|++|+.++++.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~ 33 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDL 33 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeec
Confidence 68999999999999999999999998888864
No 53
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.74 E-value=5.1e-05 Score=58.96 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=39.1
Q ss_pred HHHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhc-----CCCcEEEEccCCchhHHH
Q 033133 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 71 ~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~-----gV~y~vIDID~~~ea~~e 123 (126)
..+.++++-+.-.|++|+.+|||+|..++.++++. .+.+..+|+|+.++..++
T Consensus 124 ~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~ 181 (215)
T TIGR02187 124 TVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEK 181 (215)
T ss_pred HHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHH
Confidence 35555554445567779999999999999988765 355677888888876654
No 54
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.73 E-value=5.7e-05 Score=43.05 Aligned_cols=38 Identities=18% Similarity=0.488 Sum_probs=31.8
Q ss_pred EEEEecCCCchHHHHHHHHH-----hcCCCcEEEEccCCchhH
Q 033133 84 VVVYSKTWCSYSSEVKLLFK-----RLGVEPLVIELDEMGMRL 121 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~-----~~gV~y~vIDID~~~ea~ 121 (126)
+++|..+|||+|.+++..++ +.++.+..++++..++..
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALE 43 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHh
Confidence 46899999999999999999 567888888888776544
No 55
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.72 E-value=6.4e-05 Score=48.03 Aligned_cols=33 Identities=24% Similarity=0.191 Sum_probs=30.1
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
+.+|+.+.||+|++++-+|+.+|++|+++++|.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~ 33 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNL 33 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecC
Confidence 368999999999999999999999999888873
No 56
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.72 E-value=0.0001 Score=46.50 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=34.2
Q ss_pred CCEEEEecCCCchHHHHHHHHHh-----cCCCcEEEEccCCchhHHH
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKR-----LGVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~-----~gV~y~vIDID~~~ea~~e 123 (126)
.-+++|+.+||++|++.+..|++ .++.+..+|.+..++..++
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 58 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEE 58 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHh
Confidence 34779999999999999999987 6788888888876665544
No 57
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.72 E-value=5.4e-05 Score=54.38 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=37.6
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|.+|+.+.|+=|++|+++|++.|++|+++|+-+.|-..+++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~ 42 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELE 42 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHH
Confidence 579999999999999999999999999999988877666653
No 58
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.69 E-value=0.00011 Score=49.86 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=31.3
Q ss_pred EEEEecCCCchHHHHHHHHHh------cCCCcEEEEccCCchhHHH
Q 033133 84 VVVYSKTWCSYSSEVKLLFKR------LGVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~------~gV~y~vIDID~~~ea~~e 123 (126)
++.|..+||++|+..+..+++ .++.+..+|+|++++..++
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~ 62 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEA 62 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHH
Confidence 558899999999999888866 3466788888887776554
No 59
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=97.66 E-value=0.0001 Score=49.94 Aligned_cols=37 Identities=19% Similarity=0.445 Sum_probs=33.2
Q ss_pred CCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCC
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~ 117 (126)
...+.+|+...||||.+++.+|..+|++|+.++++..
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~ 52 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLK 52 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC
Confidence 3468999999999999999999999999999888743
No 60
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.65 E-value=8.9e-05 Score=54.30 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=39.7
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
.|++|..+.|--|++|++.|+++|++|+++|+-++|-..++|.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~ 44 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELK 44 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHH
Confidence 4889999999999999999999999999999998888877765
No 61
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.64 E-value=8.2e-05 Score=53.17 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=36.7
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~em 124 (126)
|.+|+.+.|.=|++|++.|+++|++|+++|+-+.|-..+++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el 41 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAEL 41 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHH
Confidence 57999999999999999999999999999998777666555
No 62
>PRK10853 putative reductase; Provisional
Probab=97.62 E-value=9.4e-05 Score=53.90 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=37.5
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
|.||+.+.|.-|++|+++|+++|++|+++|+-++|-..+++.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~ 43 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQ 43 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHH
Confidence 689999999999999999999999999999988776666553
No 63
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.57 E-value=0.00014 Score=53.82 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=38.2
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
.+++|+.+.|.=|++|+++|+++|++|+++|+-++|--.+++.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~ 44 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLR 44 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHH
Confidence 4789999999999999999999999999999988777666653
No 64
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.52 E-value=0.00015 Score=49.35 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=27.2
Q ss_pred HhhhcCCC--EEEEecCCCchHHHHHHHH-------Hhc--CCCcEEEEccCCch
Q 033133 76 KKTVSENP--VVVYSKTWCSYSSEVKLLF-------KRL--GVEPLVIELDEMGM 119 (126)
Q Consensus 76 ~~lI~~~~--VvVYSKs~CPYC~kAK~LL-------~~~--gV~y~vIDID~~~e 119 (126)
++.+++++ ++.|+.+|||+|++.+..+ +.. ++.+..+|++++++
T Consensus 5 ~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~ 59 (104)
T cd02953 5 AQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDP 59 (104)
T ss_pred HHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCH
Confidence 34445554 5589999999999887443 111 44455666665443
No 65
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.50 E-value=0.0002 Score=45.25 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=29.8
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
.+|+.+.||+|.+++-+|+.+|++|+.+++|.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~ 33 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPYEWVEVDI 33 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEecC
Confidence 68999999999999999999999999988874
No 66
>PRK10026 arsenate reductase; Provisional
Probab=97.43 E-value=0.00025 Score=53.66 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=38.4
Q ss_pred CCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHh
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~em 124 (126)
..|.||..+.|.=|++|+++|+++|++|+++|+-++|-..+++
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL 44 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDEL 44 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHH
Confidence 4688999999999999999999999999999998877666655
No 67
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=97.43 E-value=0.00016 Score=50.84 Aligned_cols=34 Identities=9% Similarity=-0.023 Sum_probs=31.3
Q ss_pred chHHHHHHHHHhcCCCcEEEEccCCchhHHHhhC
Q 033133 93 SYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLIR 126 (126)
Q Consensus 93 PYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi~ 126 (126)
-.|++++++|+.++|+|+++||+.+++++++|.+
T Consensus 17 ~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~ 50 (92)
T cd03030 17 KRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRE 50 (92)
T ss_pred HHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHH
Confidence 3689999999999999999999999999999864
No 68
>PTZ00051 thioredoxin; Provisional
Probab=97.38 E-value=0.00063 Score=45.34 Aligned_cols=51 Identities=16% Similarity=0.380 Sum_probs=35.3
Q ss_pred HHHHhhhcCCC--EEEEecCCCchHHHHHHHHHhc-----CCCcEEEEccCCchhHHH
Q 033133 73 ESVKKTVSENP--VVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 73 ~~V~~lI~~~~--VvVYSKs~CPYC~kAK~LL~~~-----gV~y~vIDID~~~ea~~e 123 (126)
+..+++++.++ ++.|..+||+.|++....|++. ++.+..+|.++.++..++
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~ 66 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEK 66 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHH
Confidence 34455555554 4589999999999998877653 466677777766655544
No 69
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.29 E-value=0.0009 Score=47.96 Aligned_cols=46 Identities=22% Similarity=0.493 Sum_probs=31.2
Q ss_pred HHHhhhcCC-CE-EEEecCCCchHHHHHHHHHh------cCCCcEEEEccCCch
Q 033133 74 SVKKTVSEN-PV-VVYSKTWCSYSSEVKLLFKR------LGVEPLVIELDEMGM 119 (126)
Q Consensus 74 ~V~~lI~~~-~V-vVYSKs~CPYC~kAK~LL~~------~gV~y~vIDID~~~e 119 (126)
..+...+++ +| +.|+.+||++|++.+..+.+ .+.++..+++|.+++
T Consensus 11 al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~ 64 (117)
T cd02959 11 GIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE 64 (117)
T ss_pred HHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC
Confidence 334333333 44 45899999999988776655 345678889987754
No 70
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.25 E-value=0.00042 Score=50.71 Aligned_cols=41 Identities=10% Similarity=0.302 Sum_probs=31.7
Q ss_pred CEEEEecCCCchHHHHHHHHHhc-----C-CCcEEEEccCCchhHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL-----G-VEPLVIELDEMGMRLSV 123 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~-----g-V~y~vIDID~~~ea~~e 123 (126)
-|+-|+.+|||.|++.+..|++. + +.+..+|+|+.++..++
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~ 63 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKM 63 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHH
Confidence 44569999999999988877544 2 45788999998887665
No 71
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.22 E-value=0.00088 Score=45.10 Aligned_cols=46 Identities=7% Similarity=0.264 Sum_probs=33.4
Q ss_pred hhhcCCCEEEEecCCCchHHHHHHHHHhc-------CCCcEEEEccCCchhHH
Q 033133 77 KTVSENPVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDEMGMRLS 122 (126)
Q Consensus 77 ~lI~~~~VvVYSKs~CPYC~kAK~LL~~~-------gV~y~vIDID~~~ea~~ 122 (126)
+.++...++.|..+|||+|++....|++. ++.+-.+|.|++++..+
T Consensus 13 ~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~ 65 (101)
T cd02994 13 LVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSG 65 (101)
T ss_pred HHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHH
Confidence 34566789999999999999888777543 35556777777665443
No 72
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.21 E-value=0.00029 Score=45.94 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=29.7
Q ss_pred EEecCCCchHHHHHHHHHhcCCCcEEEEccCCc
Q 033133 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG 118 (126)
Q Consensus 86 VYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ 118 (126)
+|+.++||||+|++-+|+.+|++|+.++++...
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~ 33 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE 33 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc
Confidence 588999999999999999999999999987543
No 73
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.20 E-value=0.00088 Score=44.14 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=34.4
Q ss_pred HHHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhc------CCCcEEEEccCCchhHHH
Q 033133 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 71 ~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~------gV~y~vIDID~~~ea~~e 123 (126)
..+.+.+ -...-|+.|..+||++|+..+..|.+. ++.+..+|.++.++..++
T Consensus 9 f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~ 66 (103)
T PF00085_consen 9 FEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKK 66 (103)
T ss_dssp HHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHH
T ss_pred HHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhc
Confidence 3444444 223456688999999999988777543 356677787777655544
No 74
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00074 Score=47.59 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=35.6
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHh
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~em 124 (126)
++|....||.|.-+++.|++.+++|+.+||.+......+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrF 44 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRF 44 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHH
Confidence 7999999999999999999999999999998776655554
No 75
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.07 E-value=0.0011 Score=56.74 Aligned_cols=45 Identities=18% Similarity=0.425 Sum_probs=37.7
Q ss_pred HHHHHhhhcCC--CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 72 EESVKKTVSEN--PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 72 ~~~V~~lI~~~--~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
.+.+-..++.. ++++|--..||||-+++.+|+-+|++|+++|++-
T Consensus 77 ae~~~~~ld~s~L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnp 123 (370)
T KOG3029|consen 77 AETKATRLDGSPLDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNP 123 (370)
T ss_pred HHHHHhhcCCCCceEEEEeeccCchHHHHHHHHhhcCCceEEEEecc
Confidence 34444445555 8999999999999999999999999999999963
No 76
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=97.05 E-value=0.00079 Score=47.49 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=28.3
Q ss_pred EecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHHh
Q 033133 87 YSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 87 YSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~em 124 (126)
|+.+.|.=|++|+++|++.|++|+++|+-+.|-..+++
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el 38 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREEL 38 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHH
Confidence 78899999999999999999999999998877666655
No 77
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.04 E-value=0.00086 Score=52.70 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=28.6
Q ss_pred EEEEecCCCchHHHH----HHHHHhcCCCcEEEEccCC
Q 033133 84 VVVYSKTWCSYSSEV----KLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 84 VvVYSKs~CPYC~kA----K~LL~~~gV~y~vIDID~~ 117 (126)
+++|..+|||||++. +++-+++|++...|.+|+.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~ 110 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ 110 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 999999999999987 6777778888777887755
No 78
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.02 E-value=0.00093 Score=58.06 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=44.3
Q ss_pred chHHHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhc-----CCCcEEEEccCCchhHHH
Q 033133 69 SRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 69 ~~~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~-----gV~y~vIDID~~~ea~~e 123 (126)
.+..++++++-++..|.+|.+++||||.+|.+.+++. +|..+.||..+.||..++
T Consensus 105 ~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~ 164 (517)
T PRK15317 105 QEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEA 164 (517)
T ss_pred HHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHh
Confidence 4567788887777889999999999999998888665 456788888888876654
No 79
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.95 E-value=0.0015 Score=50.77 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=34.2
Q ss_pred HHhhhcCCCEEEEec---CCCchHHHHHHHHHhc-----CCCcEEEEcc--CCchhHH
Q 033133 75 VKKTVSENPVVVYSK---TWCSYSSEVKLLFKRL-----GVEPLVIELD--EMGMRLS 122 (126)
Q Consensus 75 V~~lI~~~~VvVYSK---s~CPYC~kAK~LL~~~-----gV~y~vIDID--~~~ea~~ 122 (126)
.+++.+...|++|.. +|||+|+.++.+|++. ++++.++++| ++++..+
T Consensus 14 ~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~ 71 (215)
T TIGR02187 14 LKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAE 71 (215)
T ss_pred HHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHH
Confidence 555556678889988 9999999998888665 2445577777 4554443
No 80
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=96.94 E-value=0.0017 Score=41.83 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=29.6
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
+.+|+...||||.+++-+|+.+|++|+.++++.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~ 33 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDL 33 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCc
Confidence 358999999999999999999999999888764
No 81
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=96.94 E-value=0.00079 Score=45.90 Aligned_cols=23 Identities=26% Similarity=0.684 Sum_probs=16.3
Q ss_pred CCCEEEEecCCCchHHHHHHHHH
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLFK 103 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL~ 103 (126)
...|++|+.+|||||++..+-+.
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHH
Confidence 34678999999999998865554
No 82
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=96.91 E-value=0.0011 Score=42.52 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=24.9
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 90 TWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 90 s~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
++||||.+++.+|+.+|++|+.++++.
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~ 40 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSN 40 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCC
Confidence 489999999999999999999999874
No 83
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.91 E-value=0.0028 Score=40.80 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=26.9
Q ss_pred CCEEEEecCCCchHHHHHHHHHh----c----CCCcEEEEccCCchhHH
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKR----L----GVEPLVIELDEMGMRLS 122 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~----~----gV~y~vIDID~~~ea~~ 122 (126)
.-++.|.++||++|+++...|++ . ++.+..+|.+++++..+
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 65 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCS 65 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHH
Confidence 36778999999999998877754 3 23344555555444433
No 84
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.89 E-value=0.0044 Score=43.94 Aligned_cols=43 Identities=5% Similarity=-0.013 Sum_probs=31.8
Q ss_pred CCC-EEEEecCCCchHHHHHHHHHhc-----CCCcEEEEccCCchhHHH
Q 033133 81 ENP-VVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 81 ~~~-VvVYSKs~CPYC~kAK~LL~~~-----gV~y~vIDID~~~ea~~e 123 (126)
... |+.|..+|||.|+..+..|++. ++.+..||+|+.++..++
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~ 70 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEK 70 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHH
Confidence 344 4477889999999888777653 467788888888766654
No 85
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=96.86 E-value=0.0028 Score=41.44 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=30.2
Q ss_pred CCEEEEecCCCchHHHHHHHHHhc------CCCcEEEEccCCchhHHH
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~~------gV~y~vIDID~~~ea~~e 123 (126)
.-++.|..+||++|++....|++. ++.+..+|.|++++..++
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~ 63 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAK 63 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHH
Confidence 456688899999999887776542 256677787777665544
No 86
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.85 E-value=0.0016 Score=56.64 Aligned_cols=55 Identities=7% Similarity=0.151 Sum_probs=43.2
Q ss_pred chHHHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhc-----CCCcEEEEccCCchhHHH
Q 033133 69 SRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 69 ~~~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~-----gV~y~vIDID~~~ea~~e 123 (126)
....+.++++-++..|.+|.++.||||.+|.+.+++. +|..+.+|....|+..++
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~ 165 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEA 165 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHh
Confidence 4556778877777789999999999999999888765 455678888777776654
No 87
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=96.80 E-value=0.0029 Score=43.36 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=28.9
Q ss_pred EEEEecCCCchHHHHHHHHHhc------------CCCcEEEEccCCchhHHH
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRL------------GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~------------gV~y~vIDID~~~ea~~e 123 (126)
++.|..+||++|++.+..+++. .+.+-.+|.|++++..++
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~ 73 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADR 73 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHh
Confidence 5689999999999988777532 245567888877665444
No 88
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.79 E-value=0.0029 Score=41.92 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=27.5
Q ss_pred CEEEEecCCCchHHHHHHHHHhc------CCCcEEEEccCCchhHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGMRLS 122 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~------gV~y~vIDID~~~ea~~ 122 (126)
-++.|..+||+.|++.+..|++. ++.+..+|.++.++...
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~ 62 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISE 62 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHH
Confidence 34689999999999998877652 34445566665555444
No 89
>PRK10387 glutaredoxin 2; Provisional
Probab=96.72 E-value=0.0029 Score=47.45 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=30.6
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~ 117 (126)
+.+|+.+.||||.+++-+|+.+|++|+.++++..
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~ 34 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLAND 34 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCC
Confidence 3689999999999999999999999999988654
No 90
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.72 E-value=0.0052 Score=48.81 Aligned_cols=52 Identities=12% Similarity=0.337 Sum_probs=41.7
Q ss_pred hccchHHHHHHhhhcCCCEEEEecCCCchHHHHHHHH----HhcCCCcEEEEccCC
Q 033133 66 SYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLF----KRLGVEPLVIELDEM 117 (126)
Q Consensus 66 ~~g~~~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL----~~~gV~y~vIDID~~ 117 (126)
.....-.+.++++-++..+++|.++.||||++...+| +++|++...|.+|..
T Consensus 106 ~~~~~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~ 161 (215)
T PF13728_consen 106 QREQKRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGR 161 (215)
T ss_pred HHHHHHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCC
Confidence 3344557788898889999999999999998765555 567998899999853
No 91
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=96.71 E-value=0.0036 Score=41.41 Aligned_cols=22 Identities=14% Similarity=0.526 Sum_probs=17.9
Q ss_pred CEEEEecCCCchHHHHHHHHHh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKR 104 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~ 104 (126)
-++.|..+|||+|++.+..|++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~ 42 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEK 42 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHH
Confidence 4678999999999988777644
No 92
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.71 E-value=0.0049 Score=42.34 Aligned_cols=38 Identities=34% Similarity=0.456 Sum_probs=25.5
Q ss_pred EEEEecCCCchHHHHHHHHHh----cC---CCcEEEEccCCchhHH
Q 033133 84 VVVYSKTWCSYSSEVKLLFKR----LG---VEPLVIELDEMGMRLS 122 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~----~g---V~y~vIDID~~~ea~~ 122 (126)
|+.|..+|||.|++....|++ .+ +.+..+|+| .++..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~ 65 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLK 65 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHH
Confidence 568999999999988777654 32 335566666 444433
No 93
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=96.70 E-value=0.0027 Score=44.71 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=24.5
Q ss_pred cCCCchHHHHHHHHHhcCCCcEEEEcc
Q 033133 89 KTWCSYSSEVKLLFKRLGVEPLVIELD 115 (126)
Q Consensus 89 Ks~CPYC~kAK~LL~~~gV~y~vIDID 115 (126)
+..||||++++-.|..+|++|+++++|
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd 45 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVD 45 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeC
Confidence 356999999999999999999888886
No 94
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=96.69 E-value=0.0038 Score=39.98 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=30.7
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~ 117 (126)
+.+|+.+.||+|.+++-+|+..|++|+.++++..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~ 35 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLT 35 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCcc
Confidence 5789999999999999999999999998887743
No 95
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0049 Score=50.42 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=48.9
Q ss_pred HHHHHHhhhcCCCEEEEecC-----CCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 71 LEESVKKTVSENPVVVYSKT-----WCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 71 ~~~~V~~lI~~~~VvVYSKs-----~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
..+.++++++.++|++|-|. -|.|.+++.++|+++|++|..+||-.|++-++-++
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK 187 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLK 187 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhh
Confidence 34499999999999999994 49999999999999999999999999988777654
No 96
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.65 E-value=0.0037 Score=43.90 Aligned_cols=28 Identities=14% Similarity=0.488 Sum_probs=19.3
Q ss_pred HHhhhcCC---CEEEEecCCCchHHHHHHHH
Q 033133 75 VKKTVSEN---PVVVYSKTWCSYSSEVKLLF 102 (126)
Q Consensus 75 V~~lI~~~---~VvVYSKs~CPYC~kAK~LL 102 (126)
+++.++++ -++.|..+|||+|++.+..+
T Consensus 6 ~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~ 36 (125)
T cd02951 6 LAEAAADGKKPLLLLFSQPGCPYCDKLKRDY 36 (125)
T ss_pred HHHHHHcCCCcEEEEEeCCCCHHHHHHHHHh
Confidence 34444454 35589999999999876543
No 97
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=96.65 E-value=0.0037 Score=41.56 Aligned_cols=41 Identities=20% Similarity=0.078 Sum_probs=28.3
Q ss_pred CEEEEecCCCchHHHHHHHHHhc------CCCcEEEEccCCchhHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~------gV~y~vIDID~~~ea~~e 123 (126)
-++.|..+||+.|++.+..|++. ++.+..+|.|+.++..++
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~ 61 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQ 61 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHH
Confidence 46688999999999987777543 233456777776655444
No 98
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=96.61 E-value=0.0034 Score=42.42 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=28.9
Q ss_pred CEEEEecCCCchHHHHHHHHHhcC------CCcEEEEccCCchhHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEMGMRLSV 123 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~g------V~y~vIDID~~~ea~~e 123 (126)
-++.|..+|||.|++.+..|++.. +.+..+|.|++++..++
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~ 67 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRS 67 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHH
Confidence 456799999999998887775432 34567788877665443
No 99
>PRK09381 trxA thioredoxin; Provisional
Probab=96.59 E-value=0.0061 Score=41.62 Aligned_cols=42 Identities=10% Similarity=0.214 Sum_probs=29.1
Q ss_pred CCEEEEecCCCchHHHHHHHHHh----c--CCCcEEEEccCCchhHHH
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKR----L--GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~----~--gV~y~vIDID~~~ea~~e 123 (126)
.-++.|..+|||+|+.....|++ . ++.+..+|.|..++..++
T Consensus 23 ~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~ 70 (109)
T PRK09381 23 AILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 70 (109)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHh
Confidence 34668899999999988766654 3 244567777776664443
No 100
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.58 E-value=0.0034 Score=55.35 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=42.6
Q ss_pred chHHHHHHhhhcCCCEEEEecCCCchHHHHHHHHH----hc-CCCcEEEEccCCchhHHH
Q 033133 69 SRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFK----RL-GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 69 ~~~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~----~~-gV~y~vIDID~~~ea~~e 123 (126)
....+.++++-++-.|.+|..++||||.++.+.++ .. +|+.+++|....++..++
T Consensus 465 ~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 524 (555)
T TIGR03143 465 EELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDE 524 (555)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHh
Confidence 45567777665666789999999999998776654 34 688999999988877643
No 101
>PHA02278 thioredoxin-like protein
Probab=96.55 E-value=0.0097 Score=42.09 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=27.5
Q ss_pred cCCC-EEEEecCCCchHHHHHHHHHhc------CCCcEEEEccCC
Q 033133 80 SENP-VVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEM 117 (126)
Q Consensus 80 ~~~~-VvVYSKs~CPYC~kAK~LL~~~------gV~y~vIDID~~ 117 (126)
+... |+-|..+||+.|+.....|++. .+++..+|+|++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~ 57 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAE 57 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcc
Confidence 3444 4578899999999888776543 245778888876
No 102
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=96.55 E-value=0.0051 Score=40.01 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=28.1
Q ss_pred EEEEecC-------CCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 84 VVVYSKT-------WCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 84 VvVYSKs-------~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
+++|... +||||.+++.+|..+|++|+.++++.
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~ 41 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL 41 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc
Confidence 4567776 67999999999999999999888763
No 103
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=96.53 E-value=0.011 Score=39.27 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=28.1
Q ss_pred CEEEEecCCCchHHHHHHHHHhc------CCCcEEEEccCCchhHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~------gV~y~vIDID~~~ea~~e 123 (126)
-++.|..+||+.|++.+..|++. .+.+..+|.|+.++..++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~ 67 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQ 67 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHH
Confidence 36688999999999987776542 244566676666555443
No 104
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=96.49 E-value=0.0052 Score=40.34 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=30.0
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
+++|....||+|++++-+|+++|++|+.+++|.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~ 33 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSL 33 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecC
Confidence 468999999999999999999999999988764
No 105
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.46 E-value=0.0072 Score=41.64 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=26.2
Q ss_pred CEEEEecCCCchHHHHHHHHHhc-----CCCcEEEEccCCc
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMG 118 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~-----gV~y~vIDID~~~ 118 (126)
-|+-|..+||+.|++....|++. ++.+..+|+|+++
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~ 58 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND 58 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh
Confidence 45578999999999887777643 4556667777654
No 106
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.44 E-value=0.0046 Score=46.89 Aligned_cols=41 Identities=7% Similarity=0.220 Sum_probs=31.8
Q ss_pred CEEEEecCCCchHHHHHHHHHhcC------CCcEEEEccCCchhHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEMGMRLSV 123 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~g------V~y~vIDID~~~ea~~e 123 (126)
-|+-|+.+|||-|++...+|++.. +.+..||+|+.++..++
T Consensus 26 VVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~ 72 (142)
T PLN00410 26 VVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTM 72 (142)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHH
Confidence 345799999999999987776543 33478999999887665
No 107
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.44 E-value=0.0037 Score=41.15 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=28.1
Q ss_pred CEEEEecCCCchHHHHHHHHHhc--------CCCcEEEEccCCchhHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL--------GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~--------gV~y~vIDID~~~ea~~e 123 (126)
-++.|..+||+.|++....|++. ++.+..+|.|++++..++
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 64 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASR 64 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHh
Confidence 47799999999999876655432 244566677766655443
No 108
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.43 E-value=0.0059 Score=39.03 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=29.1
Q ss_pred EEEecCCCchHHHHHHHHHh--cCCCcEEEEccC
Q 033133 85 VVYSKTWCSYSSEVKLLFKR--LGVEPLVIELDE 116 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~--~gV~y~vIDID~ 116 (126)
.+|....||+|.+++-+|.. +|++|+.+.+|.
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~ 35 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNP 35 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCc
Confidence 58999999999999999999 889999998874
No 109
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.43 E-value=0.0071 Score=40.16 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=26.0
Q ss_pred CCEEEEecCCCchHHHHHHHHHhc---------CCCcEEEEccCCchhH
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKRL---------GVEPLVIELDEMGMRL 121 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~~---------gV~y~vIDID~~~ea~ 121 (126)
.-++.|..+||+.|++....|++. ++.+..+|.|++++..
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~ 66 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELC 66 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhH
Confidence 355689999999999876655332 2445566666555443
No 110
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.41 E-value=0.0093 Score=41.24 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=30.3
Q ss_pred HHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhc-----CCCcEEEEcc-CCchhH
Q 033133 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELD-EMGMRL 121 (126)
Q Consensus 72 ~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~-----gV~y~vIDID-~~~ea~ 121 (126)
.+.+.+.-...-++.|..+|||+|++....|++. ++.+..+|.| +.++..
T Consensus 10 ~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~ 65 (100)
T cd02999 10 LDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLL 65 (100)
T ss_pred HHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHH
Confidence 3344443223346689999999999888777544 3445555655 444433
No 111
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=96.34 E-value=0.0066 Score=41.00 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=28.6
Q ss_pred CEEEEecCCCchHHHHHHHHHhc------CCCcEEEEccCCchhHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~------gV~y~vIDID~~~ea~~e 123 (126)
-++.|..+||+.|++....+++. ++.+-.+|.|+.++..++
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~ 68 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQ 68 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHH
Confidence 45679999999999887666433 245567787776665443
No 112
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.34 E-value=0.0074 Score=45.77 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=30.9
Q ss_pred EEEEecCCCchHHHHHHHHHhc-------CCCcEEEEccCCchhHHH
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~-------gV~y~vIDID~~~ea~~e 123 (126)
|+.|..+|||.|++....|++. ++.+-.+|+|+.++..++
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~ 97 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEK 97 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHH
Confidence 7789999999999887766432 366678888888876654
No 113
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=96.13 E-value=0.0092 Score=41.73 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=28.3
Q ss_pred CEEEEecCCCchHHHHHHHHH----h---cCCCcEEEEccCCchhHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFK----R---LGVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~----~---~gV~y~vIDID~~~ea~~e 123 (126)
-++.|..+|||.|++....|+ + .++.+..+|+|+.++..++
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~ 74 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARK 74 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHH
Confidence 455789999999987765543 2 2466677888776665543
No 114
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.13 E-value=0.0094 Score=39.35 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=24.5
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 90 TWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 90 s~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
++||||.+++-+|..+|++|+.++++.
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~ 40 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEF 40 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecC
Confidence 689999999999999999999888763
No 115
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.13 E-value=0.014 Score=47.77 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=34.1
Q ss_pred HHHHHhhhcCCCEEEEecCCCchHHHHHHHH----HhcCCCcEEEEccCC
Q 033133 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLF----KRLGVEPLVIELDEM 117 (126)
Q Consensus 72 ~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL----~~~gV~y~vIDID~~ 117 (126)
...++++-...-++.|..+|||+|++....| +++|+....|++|..
T Consensus 158 ~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~ 207 (271)
T TIGR02740 158 DRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGG 207 (271)
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCC
Confidence 3566666666677789999999999776555 456777777888764
No 116
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=96.12 E-value=0.011 Score=39.82 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=23.8
Q ss_pred CEEEEecCCCchHHHHHHHHHhc----C--CCcEEEEccC
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL----G--VEPLVIELDE 116 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~----g--V~y~vIDID~ 116 (126)
-++.|..+||++|++....|++. + +.+..+|.|.
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~ 60 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc
Confidence 47789999999999887666543 2 3344566665
No 117
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.10 E-value=0.0087 Score=43.87 Aligned_cols=34 Identities=9% Similarity=0.329 Sum_probs=24.1
Q ss_pred EEEEec-------CCCchHHHHHHHH----HhcC--CCcEEEEccCC
Q 033133 84 VVVYSK-------TWCSYSSEVKLLF----KRLG--VEPLVIELDEM 117 (126)
Q Consensus 84 VvVYSK-------s~CPYC~kAK~LL----~~~g--V~y~vIDID~~ 117 (126)
|+.|.. +|||.|++++-.| ++.+ +.+..||+|+.
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~ 71 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDR 71 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCc
Confidence 556888 8999999876554 4443 56677777664
No 118
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.07 E-value=0.021 Score=39.55 Aligned_cols=36 Identities=19% Similarity=0.516 Sum_probs=26.2
Q ss_pred CCCEEEEecCCCchHHHHHHHHHhc-------CCCcEEEEccC
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDE 116 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL~~~-------gV~y~vIDID~ 116 (126)
..-++.|..+|||.|++.+..|++. ++.+-.+|.|.
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 3456689999999999988777553 34456667766
No 119
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.05 E-value=0.0095 Score=45.81 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=28.9
Q ss_pred EEecCCCchHHHHHHHHHhcCCCcEEEEccCC
Q 033133 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 86 VYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~ 117 (126)
+|....||||.+++-+|+.+|++|+.++++..
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~ 33 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNIPVEKHVLLND 33 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCCCeEEEECCCC
Confidence 68889999999999999999999999887654
No 120
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.04 E-value=0.013 Score=43.16 Aligned_cols=40 Identities=5% Similarity=0.150 Sum_probs=31.8
Q ss_pred EEEEecCCCchHHHHHHHHHhc-----C-CCcEEEEccCCchhHHH
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRL-----G-VEPLVIELDEMGMRLSV 123 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~-----g-V~y~vIDID~~~ea~~e 123 (126)
|+-|+.+|||-|+..-.+|++. + +.+..+|+|+.++-.++
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~ 63 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQY 63 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHh
Confidence 3469999999999988777654 2 55788999999886665
No 121
>PRK10996 thioredoxin 2; Provisional
Probab=96.04 E-value=0.013 Score=42.93 Aligned_cols=41 Identities=12% Similarity=0.267 Sum_probs=28.1
Q ss_pred CEEEEecCCCchHHHHHHHHHhc----C--CCcEEEEccCCchhHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL----G--VEPLVIELDEMGMRLSV 123 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~----g--V~y~vIDID~~~ea~~e 123 (126)
-++.|..+|||+|++....|++. + +.+..+|+|+.++..++
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~ 101 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSAR 101 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHh
Confidence 46689999999999876666542 2 34456677776665543
No 122
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.02 E-value=0.0099 Score=47.50 Aligned_cols=34 Identities=15% Similarity=0.401 Sum_probs=25.4
Q ss_pred CCEEEEecCCCchHHHHHHHHHhc---CCCcEEEEcc
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKRL---GVEPLVIELD 115 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~~---gV~y~vIDID 115 (126)
..|++|+-+.||||+++.+.++++ |+.+.++...
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P 145 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFP 145 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEecc
Confidence 358899999999999998777664 4555555443
No 123
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.00 E-value=0.0073 Score=41.19 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=26.8
Q ss_pred hhhcCC-CEEEEecCCCchHHHHHHHHHh----c---C--CCcEEEEccCCchhH
Q 033133 77 KTVSEN-PVVVYSKTWCSYSSEVKLLFKR----L---G--VEPLVIELDEMGMRL 121 (126)
Q Consensus 77 ~lI~~~-~VvVYSKs~CPYC~kAK~LL~~----~---g--V~y~vIDID~~~ea~ 121 (126)
+.++.. -++.|..+|||+|++....|++ + + +.+..+|.+..++..
T Consensus 11 ~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~ 65 (104)
T cd03000 11 DVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIA 65 (104)
T ss_pred hhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHH
Confidence 334433 4557899999999977655543 2 3 333456666555543
No 124
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=95.98 E-value=0.013 Score=43.03 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=24.5
Q ss_pred CCCEE-EEecCCCchHHHHHH-HHHh------cCCCc--EEEEccCCchhH
Q 033133 81 ENPVV-VYSKTWCSYSSEVKL-LFKR------LGVEP--LVIELDEMGMRL 121 (126)
Q Consensus 81 ~~~Vv-VYSKs~CPYC~kAK~-LL~~------~gV~y--~vIDID~~~ea~ 121 (126)
.++|+ .|+.+||++|++.++ .|.+ .+-.| ..+|.|+.++..
T Consensus 15 ~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~ 65 (124)
T cd02955 15 DKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVD 65 (124)
T ss_pred CCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHH
Confidence 34555 488999999998753 3433 22234 455555655543
No 125
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=95.86 E-value=0.017 Score=36.85 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=29.4
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
++|....|+.|.+++-+|+.+|++|+.++++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~ 33 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITY 33 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCH
Confidence 57888999999999999999999999998874
No 126
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=95.86 E-value=0.019 Score=37.45 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=28.4
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
+.+|+.+. |+|.+++-+|+.+|++|+.+.++.
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~ 33 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDI 33 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecC
Confidence 56899886 999999999999999998888773
No 127
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=95.77 E-value=0.014 Score=37.94 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=28.9
Q ss_pred CCCEEEEecCCCchHHHHHHHH----Hhc---CCCcEEEEccCC-chhHHHh
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLF----KRL---GVEPLVIELDEM-GMRLSVL 124 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL----~~~---gV~y~vIDID~~-~ea~~em 124 (126)
..-++.|..+|||+|.+....| +++ ++.+..+++|.+ ++...++
T Consensus 20 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~ 71 (116)
T cd02966 20 KVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAF 71 (116)
T ss_pred CEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHH
Confidence 4457788899999999664444 333 456677777775 5554443
No 128
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=95.77 E-value=0.017 Score=44.03 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=31.5
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
.+.+|+.+.||||.+++-+|..+|++|+.+.+|.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~ 43 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEK 43 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCc
Confidence 4789999999999999999999999999998874
No 129
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.75 E-value=0.015 Score=38.42 Aligned_cols=36 Identities=22% Similarity=0.514 Sum_probs=25.2
Q ss_pred CEEEEecCCCchHHHHHH----HHHhcCCCcEEEEccCCch
Q 033133 83 PVVVYSKTWCSYSSEVKL----LFKRLGVEPLVIELDEMGM 119 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~----LL~~~gV~y~vIDID~~~e 119 (126)
+|.+| .++||+|.++.+ ++++.|++++++|+...++
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~~~ 41 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIEDFEE 41 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETTTHHH
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEccCHHH
Confidence 36675 455999997665 4567788899999844333
No 130
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=95.70 E-value=0.015 Score=41.79 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=28.8
Q ss_pred CEEEEecCCCchHHHHHHHHHhcC------CCcEEEEccCCchhH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEMGMRL 121 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~g------V~y~vIDID~~~ea~ 121 (126)
-++.|..+||++|++.+..|++.. +.+-.||.|++++..
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~ 76 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKC 76 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHH
Confidence 455899999999999887776542 445667887776554
No 131
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=95.64 E-value=0.019 Score=40.08 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=24.9
Q ss_pred EEEEecCCCchHHHHHHHHHhc-----CCCcEEEEccCC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEM 117 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~-----gV~y~vIDID~~ 117 (126)
|+.|..+||+.|+.....|++. ++.+..+|+|+.
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~ 66 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA 66 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh
Confidence 4469999999999888777653 355566676654
No 132
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.59 E-value=0.0058 Score=45.04 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=32.4
Q ss_pred hHHHHHHhhhcCCCEEEEecCCCchHHHH----HHHHHhc-CCCcEEEEccCCchhHH
Q 033133 70 RLEESVKKTVSENPVVVYSKTWCSYSSEV----KLLFKRL-GVEPLVIELDEMGMRLS 122 (126)
Q Consensus 70 ~~~~~V~~lI~~~~VvVYSKs~CPYC~kA----K~LL~~~-gV~y~vIDID~~~ea~~ 122 (126)
...+.++...++-.++|++-+|||+|.+. .++.+.. +++..++..|++++..+
T Consensus 31 ~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~ 88 (129)
T PF14595_consen 31 EQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMD 88 (129)
T ss_dssp HHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTT
T ss_pred HHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHH
Confidence 45678888888889999999999999965 4455555 66677776666655443
No 133
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=95.59 E-value=0.024 Score=35.63 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=28.8
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
.+|+...||+|.+++-+|..+|++|+.+++|.
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~ 33 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNL 33 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecC
Confidence 57888899999999999999999999888764
No 134
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=95.52 E-value=0.025 Score=37.53 Aligned_cols=20 Identities=25% Similarity=0.665 Sum_probs=16.1
Q ss_pred CEEEEecCCCchHHHHHHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLF 102 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL 102 (126)
-++.|..+|||+|++....+
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~ 39 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEF 39 (104)
T ss_pred EEEEEECCCCHHHHHhCHHH
Confidence 46789999999999886444
No 135
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=95.50 E-value=0.027 Score=36.48 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=29.8
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccCC
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~ 117 (126)
.+|+...||+|.+++-+|+.+|++|+.+++|-.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~ 34 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPG 34 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccc
Confidence 478899999999999999999999998888754
No 136
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.45 E-value=0.012 Score=44.79 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCCEEEEecCCCchHHHHHHHHHh--cCCCcEEEEc
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLFKR--LGVEPLVIEL 114 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL~~--~gV~y~vIDI 114 (126)
...|++|+-..||||+++.+.+++ .++.+.++.+
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 357889999999999999888873 3555555544
No 137
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=95.37 E-value=0.035 Score=41.98 Aligned_cols=38 Identities=16% Similarity=0.456 Sum_probs=28.5
Q ss_pred cCCCEEEEecCCCchHHHHHHHH----HhcCCCcEEEEccCC
Q 033133 80 SENPVVVYSKTWCSYSSEVKLLF----KRLGVEPLVIELDEM 117 (126)
Q Consensus 80 ~~~~VvVYSKs~CPYC~kAK~LL----~~~gV~y~vIDID~~ 117 (126)
.+..++.|..+|||+|++..-.| +++++.+..|++|+.
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 45569999999999999776555 455776677777754
No 138
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=95.36 E-value=0.032 Score=38.93 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=25.0
Q ss_pred CEEEEecCCCchHHHHHHHHHhc----CCCcEEEEccCCchhHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL----GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~----gV~y~vIDID~~~ea~~e 123 (126)
-|+.|..+|||.|.+....|++. ++.+..+.++..++..++
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~ 72 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALA 72 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHH
Confidence 46788899999999766555443 344444444444444433
No 139
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=95.35 E-value=0.027 Score=37.19 Aligned_cols=35 Identities=14% Similarity=0.376 Sum_probs=23.6
Q ss_pred CEEEEecCCCchHHHHHHHHHhcC--------CCcEEEEccCC
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLG--------VEPLVIELDEM 117 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~g--------V~y~vIDID~~ 117 (126)
-++.|..+||++|++....|++.. +.+..+|.++.
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~ 63 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN 63 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch
Confidence 456799999999998877665432 33455666554
No 140
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=95.32 E-value=0.028 Score=42.48 Aligned_cols=44 Identities=5% Similarity=0.056 Sum_probs=27.5
Q ss_pred cCCC-EEEEecCCCchHHHHHHHHHh-------c-------CCCcEEEEccCCchhHHH
Q 033133 80 SENP-VVVYSKTWCSYSSEVKLLFKR-------L-------GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 80 ~~~~-VvVYSKs~CPYC~kAK~LL~~-------~-------gV~y~vIDID~~~ea~~e 123 (126)
+.+. ++-|..+|||.|++..-.|.+ . ++....|.+|++++...+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~ 82 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQES 82 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHH
Confidence 3443 446788999999987766644 1 345556666665544443
No 141
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.037 Score=41.85 Aligned_cols=48 Identities=15% Similarity=0.356 Sum_probs=30.4
Q ss_pred hHHHHHHhhhcCCCEEEE---------ecCCCchHHHHHHHHHh----c--CCCcEEEEccCC
Q 033133 70 RLEESVKKTVSENPVVVY---------SKTWCSYSSEVKLLFKR----L--GVEPLVIELDEM 117 (126)
Q Consensus 70 ~~~~~V~~lI~~~~VvVY---------SKs~CPYC~kAK~LL~~----~--gV~y~vIDID~~ 117 (126)
..++.+++.-+...|.|| +++|||+|.+|.-+..+ . ++.+..+++...
T Consensus 14 ~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 14 SFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR 76 (128)
T ss_pred HHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC
Confidence 446666666666676655 24899999999766533 2 334555665543
No 142
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=95.30 E-value=0.031 Score=42.47 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=25.5
Q ss_pred CEEEEecCCCchHHHHHHHH---HhcCCCcEEEEccCCchhH
Q 033133 83 PVVVYSKTWCSYSSEVKLLF---KRLGVEPLVIELDEMGMRL 121 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL---~~~gV~y~vIDID~~~ea~ 121 (126)
-|+.|..+|||+|++-...| .+.|+++.-+++|++++..
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKA 112 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHH
Confidence 35568899999998765444 3446666666666554433
No 143
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=95.19 E-value=0.045 Score=35.19 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=29.3
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
.+|+.+.+|+|+++.-+|..+|++|+.+.+|.
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~ 33 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIPFEECPIDL 33 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCCcEEEEecC
Confidence 58999999999999999999999999888864
No 144
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.16 E-value=0.06 Score=44.39 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=40.7
Q ss_pred chHHHHHHhhhcCCCEEEEecCCCchHHHHHHH----HHhcCCCcEEEEccCC
Q 033133 69 SRLEESVKKTVSENPVVVYSKTWCSYSSEVKLL----FKRLGVEPLVIELDEM 117 (126)
Q Consensus 69 ~~~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~L----L~~~gV~y~vIDID~~ 117 (126)
.+-.+.++++-++..++.|.++.||||++.--+ =+++|++...|.+|..
T Consensus 139 ~~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~ 191 (256)
T TIGR02739 139 EQKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGT 191 (256)
T ss_pred HHHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 455778888888999999999999999976444 4678999899999876
No 145
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=94.95 E-value=0.044 Score=36.23 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=22.1
Q ss_pred EEEEecCCCchHHHHHHHH-Hh------cCCCcEEEEccCC
Q 033133 84 VVVYSKTWCSYSSEVKLLF-KR------LGVEPLVIELDEM 117 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL-~~------~gV~y~vIDID~~ 117 (126)
++.|+.+||++|++.++.+ .+ ..-+|..+.+|.+
T Consensus 21 lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~ 61 (82)
T PF13899_consen 21 LVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVD 61 (82)
T ss_dssp EEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETT
T ss_pred EEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcC
Confidence 4578999999999876554 22 2334665655543
No 146
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=94.94 E-value=0.048 Score=38.72 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=24.3
Q ss_pred CEEEEecCCCchHHHHHHHHH-------hc--CCCcEEEEccCCchhH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFK-------RL--GVEPLVIELDEMGMRL 121 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~-------~~--gV~y~vIDID~~~ea~ 121 (126)
-++.|..+|||.|++....|+ +. ++....+.+|..++..
T Consensus 20 vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~ 67 (132)
T cd02964 20 VGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESF 67 (132)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHH
Confidence 345778999999997654443 22 3445566777665433
No 147
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.03 Score=40.18 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=29.2
Q ss_pred CCEE-EEecCCCchHHHHHHHHHhcCCC-----cEEEEccCCchhHH
Q 033133 82 NPVV-VYSKTWCSYSSEVKLLFKRLGVE-----PLVIELDEMGMRLS 122 (126)
Q Consensus 82 ~~Vv-VYSKs~CPYC~kAK~LL~~~gV~-----y~vIDID~~~ea~~ 122 (126)
..|+ -|+.+||+-|+..+-++.++..+ |..+|+|+.++-.+
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~ 68 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAK 68 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHH
Confidence 4444 48999999999998888776443 46788887444443
No 148
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=94.92 E-value=0.046 Score=38.39 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=23.9
Q ss_pred CEEEEecCCCchHHHHHHHHHh-------c--CCCcEEEEccCCchh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKR-------L--GVEPLVIELDEMGMR 120 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~-------~--gV~y~vIDID~~~ea 120 (126)
-++.|..+|||.|++....|.+ . +++...+.+|...+.
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~ 67 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEES 67 (131)
T ss_pred EEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHH
Confidence 4556778999999976554432 2 344556677765443
No 149
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=94.91 E-value=0.049 Score=40.78 Aligned_cols=36 Identities=8% Similarity=0.252 Sum_probs=23.7
Q ss_pred CEEEEecCCCchHHHHHHHHHh---cCCCcEEEEccCCc
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKR---LGVEPLVIELDEMG 118 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~---~gV~y~vIDID~~~ 118 (126)
-++.|..+|||.|++....|++ .|+.+..+++++..
T Consensus 66 vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~ 104 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQS 104 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCCh
Confidence 4557889999999987555543 35555555554443
No 150
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=94.89 E-value=0.028 Score=40.35 Aligned_cols=32 Identities=3% Similarity=-0.048 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhcCCCcEEEEccCCchhHHHhh
Q 033133 94 YSSEVKLLFKRLGVEPLVIELDEMGMRLSVLI 125 (126)
Q Consensus 94 YC~kAK~LL~~~gV~y~vIDID~~~ea~~emi 125 (126)
.|+++..+|+.++|+|+.+||..++++++.|.
T Consensus 19 ~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr 50 (99)
T PF04908_consen 19 RQQRVLMILEAKKIPFEEVDIAMDEEARQWMR 50 (99)
T ss_dssp HHHHHHHHHHHTT--EEEEETTT-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHH
Confidence 46788999999999999999999999988875
No 151
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=94.84 E-value=0.089 Score=43.23 Aligned_cols=49 Identities=6% Similarity=0.179 Sum_probs=39.5
Q ss_pred chHHHHHHhhhcCCCEEEEecCCCchHHHHH----HHHHhcCCCcEEEEccCC
Q 033133 69 SRLEESVKKTVSENPVVVYSKTWCSYSSEVK----LLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 69 ~~~~~~V~~lI~~~~VvVYSKs~CPYC~kAK----~LL~~~gV~y~vIDID~~ 117 (126)
.+-.+.++++-++..++.|.++.||||++.- ++=+++|++...|.+|..
T Consensus 132 ~~~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~ 184 (248)
T PRK13703 132 AQQRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGV 184 (248)
T ss_pred HHHHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 3456678888889999999999999999764 444677998888888873
No 152
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=94.83 E-value=0.046 Score=40.24 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=24.5
Q ss_pred CEEEEecCCCchHHHHHHHHHhc------CCCcEEEEccCC
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEM 117 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~------gV~y~vIDID~~ 117 (126)
-|+.|..+||++|++....|.+. ++.+..+++|..
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~ 63 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP 63 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc
Confidence 34578899999999887766543 245666777654
No 153
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=94.75 E-value=0.074 Score=34.36 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=30.3
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
++.+|....|+.|.+++-+|..+|++|+.+.++.
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~ 34 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTY 34 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH
Confidence 3578888899999999999999999999988864
No 154
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=94.69 E-value=0.036 Score=35.86 Aligned_cols=24 Identities=8% Similarity=0.315 Sum_probs=20.8
Q ss_pred CCchHHHHHHHHHhcCCCcEEEEc
Q 033133 91 WCSYSSEVKLLFKRLGVEPLVIEL 114 (126)
Q Consensus 91 ~CPYC~kAK~LL~~~gV~y~vIDI 114 (126)
+||||+|+.-+|+.+|+++++..+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v 24 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVV 24 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEE
T ss_pred CchHhHHHHHHHHHhCCCCEEEEE
Confidence 599999999999999999987666
No 155
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.055 Score=44.29 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=33.3
Q ss_pred CCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCC
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~ 117 (126)
..|.+|+.-.|||-+|++=.|+.+||+|+++++|-.
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~ 43 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT 43 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCC
Confidence 569999999999999999999999999999998754
No 156
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.57 E-value=0.034 Score=44.90 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=22.8
Q ss_pred CEEEEecCCCchHHHHHHHHHh---cC-CCcEEEEc
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKR---LG-VEPLVIEL 114 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~---~g-V~y~vIDI 114 (126)
.|+||+-..||||++..+-+.+ .| +++.++.+
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 4889999999999998655432 23 66555543
No 157
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=94.50 E-value=0.073 Score=38.85 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=35.5
Q ss_pred hHHHHHHhhhcCCCEEEEecCC--CchHHHHHHHHHhcC------CCcEEEEccCCchhHHH
Q 033133 70 RLEESVKKTVSENPVVVYSKTW--CSYSSEVKLLFKRLG------VEPLVIELDEMGMRLSV 123 (126)
Q Consensus 70 ~~~~~V~~lI~~~~VvVYSKs~--CPYC~kAK~LL~~~g------V~y~vIDID~~~ea~~e 123 (126)
...+++ -.....|+.|..+| ||-|+..+-.|++.. +.+..+|+|+.++..++
T Consensus 19 ~~~~~~--~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~ 78 (111)
T cd02965 19 TLDDWL--AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAAR 78 (111)
T ss_pred cHHHHH--hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHH
Confidence 445555 23456777889996 999999987776542 33557888888765544
No 158
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=94.48 E-value=0.064 Score=39.00 Aligned_cols=42 Identities=19% Similarity=0.426 Sum_probs=26.0
Q ss_pred CCCEEEEecCCCchHHHHHHHH----Hh---cCCCcEEEEccCCchhHH
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLF----KR---LGVEPLVIELDEMGMRLS 122 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL----~~---~gV~y~vIDID~~~ea~~ 122 (126)
..-++.|..+|||+|++....| ++ .++....++.|..++...
T Consensus 62 k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~ 110 (173)
T PRK03147 62 KGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVK 110 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHH
Confidence 3356788899999998753333 22 245566666666554433
No 159
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=94.41 E-value=0.078 Score=40.54 Aligned_cols=33 Identities=6% Similarity=0.213 Sum_probs=22.0
Q ss_pred CEEEEecCCCchHHHHH----HHHHhcCCCcEEEEcc
Q 033133 83 PVVVYSKTWCSYSSEVK----LLFKRLGVEPLVIELD 115 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK----~LL~~~gV~y~vIDID 115 (126)
-|+.|..+|||+|++.. ++-++.+++...+..|
T Consensus 77 vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~ 113 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDG 113 (189)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 45578999999998653 3335556666666533
No 160
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.03 Score=45.26 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=29.4
Q ss_pred EEecCCCchHHHHHHHHHhcCCCcEEEEccCCchh
Q 033133 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMR 120 (126)
Q Consensus 86 VYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea 120 (126)
+|--..||||.+|+-++-=+|++.+++-++.++|+
T Consensus 3 LYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~ 37 (215)
T COG2999 3 LYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEE 37 (215)
T ss_pred eeEeccChHHHHHHHHhhccCCChhhheeccCccc
Confidence 57778999999999999999999988777665553
No 161
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=94.21 E-value=0.06 Score=43.31 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=28.8
Q ss_pred CCEEEEecCCCchHHHHHHHHHhc----C--CCcEEEEccCCchhHHH
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKRL----G--VEPLVIELDEMGMRLSV 123 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~~----g--V~y~vIDID~~~ea~~e 123 (126)
.-++.|..+|||.|++.+..+++. + +.+..+|.+++++..++
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~ 101 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKR 101 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHH
Confidence 456789999999999888777653 2 33455666666554443
No 162
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.21 E-value=0.067 Score=33.54 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=19.7
Q ss_pred ecCCCchHHHHHHHHHhcC------CCcEEEEcc
Q 033133 88 SKTWCSYSSEVKLLFKRLG------VEPLVIELD 115 (126)
Q Consensus 88 SKs~CPYC~kAK~LL~~~g------V~y~vIDID 115 (126)
..+|||+|++....|.+.. +.+..+|+.
T Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~ 73 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVD 73 (127)
T ss_pred EcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECC
Confidence 5999999998877765432 445666664
No 163
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=94.21 E-value=0.081 Score=34.92 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=25.1
Q ss_pred EEEEecCCCchHHHHHHHHH----hc----CCCcEEEEccCCchhHHHh
Q 033133 84 VVVYSKTWCSYSSEVKLLFK----RL----GVEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~----~~----gV~y~vIDID~~~ea~~em 124 (126)
++.|..+|||.|.+.-..|. ++ ++++..|.+|++.+..++.
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~ 53 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKF 53 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHH
Confidence 56889999999997655553 33 3445566667665555543
No 164
>PRK15113 glutathione S-transferase; Provisional
Probab=94.17 E-value=0.1 Score=39.89 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=30.5
Q ss_pred CCEEEEecC--CCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 82 NPVVVYSKT--WCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 82 ~~VvVYSKs--~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
..+++|+.. .||||.++.-+|.++|++|+.+.+|-
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~ 40 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDL 40 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCC
Confidence 457899965 79999999999999999999888874
No 165
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=94.05 E-value=0.098 Score=37.18 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=26.4
Q ss_pred cCCC-EEEEecC-CCchHHHHH----HH---HHhcCCCcEEEEccCCch
Q 033133 80 SENP-VVVYSKT-WCSYSSEVK----LL---FKRLGVEPLVIELDEMGM 119 (126)
Q Consensus 80 ~~~~-VvVYSKs-~CPYC~kAK----~L---L~~~gV~y~vIDID~~~e 119 (126)
+.++ |+.|..+ |||+|++.- ++ +.+.++.+..+..+.++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~ 75 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP 75 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH
Confidence 3444 5667777 999998554 23 344567777777777665
No 166
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=94.03 E-value=0.12 Score=46.32 Aligned_cols=50 Identities=16% Similarity=0.355 Sum_probs=29.3
Q ss_pred HHHHHHhhhcC-CCEE-EEecCCCchHHHHHHH-H------Hh-cCCCcEEEEccCCchh
Q 033133 71 LEESVKKTVSE-NPVV-VYSKTWCSYSSEVKLL-F------KR-LGVEPLVIELDEMGMR 120 (126)
Q Consensus 71 ~~~~V~~lI~~-~~Vv-VYSKs~CPYC~kAK~L-L------~~-~gV~y~vIDID~~~ea 120 (126)
.++.+++..++ ++|+ -|+.+||+.|++.+.. | ++ .++.+..+|+|++++.
T Consensus 463 l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~ 522 (571)
T PRK00293 463 LDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAE 522 (571)
T ss_pred HHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChh
Confidence 34555544443 3444 5999999999976543 2 12 2344556777765443
No 167
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.066 Score=41.40 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=38.1
Q ss_pred HHHHHhhhcCC-C-EEEEecCCCchHHHHHHHHHhc------CCCcEEEEccCCchhHHH
Q 033133 72 EESVKKTVSEN-P-VVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 72 ~~~V~~lI~~~-~-VvVYSKs~CPYC~kAK~LL~~~------gV~y~vIDID~~~ea~~e 123 (126)
.++-++.++.. + +|.|..+||.-|+...-.|+++ .+++..+|+|++++..++
T Consensus 51 ~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~ 110 (150)
T KOG0910|consen 51 SEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAED 110 (150)
T ss_pred HHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhh
Confidence 45555555543 4 4589999999999888777765 355688999999887654
No 168
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=94.01 E-value=0.14 Score=42.45 Aligned_cols=48 Identities=10% Similarity=0.276 Sum_probs=30.2
Q ss_pred HhhhcCCC--EEEEecCCCchHHHHHHHHH-------hcC--CCcEEEEccCCchhHHH
Q 033133 76 KKTVSENP--VVVYSKTWCSYSSEVKLLFK-------RLG--VEPLVIELDEMGMRLSV 123 (126)
Q Consensus 76 ~~lI~~~~--VvVYSKs~CPYC~kAK~LL~-------~~g--V~y~vIDID~~~ea~~e 123 (126)
++.+++++ ++.|..+||++|++....++ +.+ +.+..+|.++.++..++
T Consensus 12 ~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~ 70 (462)
T TIGR01130 12 DDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQK 70 (462)
T ss_pred HHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHh
Confidence 34445554 56799999999998765443 334 55566666666554443
No 169
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=93.90 E-value=0.08 Score=35.26 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=31.1
Q ss_pred CCCEEEEecCCCchHHHHHHHHHhc------CCCcEEEEccCCchhHHH
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL~~~------gV~y~vIDID~~~ea~~e 123 (126)
..-++.|..+||+.|.+.+..|++. .+.+..+|.|+.++..++
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~ 61 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEY 61 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHH
Confidence 3456678899999999998888653 256677888776655444
No 170
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=93.84 E-value=0.19 Score=35.21 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=21.1
Q ss_pred CEEEEe-cCCCchHHHHHHH-------HHhcCCCcEEEEccCC
Q 033133 83 PVVVYS-KTWCSYSSEVKLL-------FKRLGVEPLVIELDEM 117 (126)
Q Consensus 83 ~VvVYS-Ks~CPYC~kAK~L-------L~~~gV~y~vIDID~~ 117 (126)
.|++|. .+|||+|++--.- +.+.|+....|..|..
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 344554 7899999864332 3345666666666544
No 171
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=93.83 E-value=0.068 Score=36.24 Aligned_cols=22 Identities=5% Similarity=0.280 Sum_probs=16.3
Q ss_pred CEEEEecCCCchHHHHHHHHHh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKR 104 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~ 104 (126)
-|+.|..+|||+|++....|++
T Consensus 24 vvl~F~~~wC~~C~~~~p~l~~ 45 (114)
T cd02967 24 TLLFFLSPTCPVCKKLLPVIRS 45 (114)
T ss_pred EEEEEECCCCcchHhHhHHHHH
Confidence 4567888999999977555544
No 172
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=93.78 E-value=0.11 Score=38.95 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=20.9
Q ss_pred HHHHHhhhcCC-CE-EEEecCCCchHHHHHHH-HHh
Q 033133 72 EESVKKTVSEN-PV-VVYSKTWCSYSSEVKLL-FKR 104 (126)
Q Consensus 72 ~~~V~~lI~~~-~V-vVYSKs~CPYC~kAK~L-L~~ 104 (126)
++-++..-+++ +| +.|.++|||||++.++. |.+
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~ 48 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEH 48 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCC
Confidence 44444444444 33 37889999999988654 433
No 173
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=93.62 E-value=0.19 Score=38.47 Aligned_cols=45 Identities=16% Similarity=0.025 Sum_probs=28.2
Q ss_pred HHHHHhhhcCC---CE-EEEecCCCchHHHHHHHHHhc-----CCCcEEEEccC
Q 033133 72 EESVKKTVSEN---PV-VVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDE 116 (126)
Q Consensus 72 ~~~V~~lI~~~---~V-vVYSKs~CPYC~kAK~LL~~~-----gV~y~vIDID~ 116 (126)
.++.+.+.+.. .| +-|..+|||.|+.....|+++ ++.+..||+|+
T Consensus 71 ~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~ 124 (175)
T cd02987 71 EQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA 124 (175)
T ss_pred HHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc
Confidence 44544443332 34 458899999999887776544 34556666664
No 174
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=93.40 E-value=0.17 Score=32.32 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=29.2
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
.+|+....|+|.+++-+|+.+|++|+.++++.
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~ 33 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGG 33 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEecc
Confidence 58999999999999999999999999888864
No 175
>PLN02378 glutathione S-transferase DHAR1
Probab=93.26 E-value=0.096 Score=40.26 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=24.0
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 90 TWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 90 s~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
..||||+++.-+|+.+|++|+.+.+|-
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~ 44 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINL 44 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCc
Confidence 349999999999999999998888764
No 176
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=93.03 E-value=0.088 Score=36.16 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=18.5
Q ss_pred CCCEEEEecCCCchHHHHHHHHHhc
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLFKRL 105 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL~~~ 105 (126)
+.-++.|..+|||+|+.....|.+.
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~ 45 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQL 45 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHH
Confidence 3467788899999999876555543
No 177
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=92.80 E-value=0.12 Score=42.02 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=30.8
Q ss_pred HHHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 71 ~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
.+-+|+.-... ++. .-+||||+++.-+|+++|++|+++.+|.
T Consensus 56 ~~~~~~~~~~~-~~~---~g~cp~s~rV~i~L~ekgi~ye~~~vdl 97 (265)
T PLN02817 56 LEVCVKASLTV-PNK---LGDCPFCQRVLLTLEEKHLPYDMKLVDL 97 (265)
T ss_pred HHHHHhcccCC-CCc---CCCCcHHHHHHHHHHHcCCCCEEEEeCc
Confidence 46666664432 222 3459999999999999999998877764
No 178
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=92.71 E-value=0.13 Score=41.48 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.9
Q ss_pred cCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 89 KTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 89 Ks~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
...||||+++.-.|..+|++|+++++|-
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~ 43 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDL 43 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECC
Confidence 3569999999999999999999888874
No 179
>PTZ00062 glutaredoxin; Provisional
Probab=92.45 E-value=0.21 Score=39.70 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=23.9
Q ss_pred HHHHhhhc---CCCEEEEecCCCchHHHHHHHHHhcC
Q 033133 73 ESVKKTVS---ENPVVVYSKTWCSYSSEVKLLFKRLG 106 (126)
Q Consensus 73 ~~V~~lI~---~~~VvVYSKs~CPYC~kAK~LL~~~g 106 (126)
+...+.++ ...|+.|..+|||-|+..+.+|+++-
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~ 43 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALV 43 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHH
Confidence 34445555 33555666999999999998887663
No 180
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=92.32 E-value=0.2 Score=35.26 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=17.5
Q ss_pred CEEEEecCCCchHHHHHHHHHh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKR 104 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~ 104 (126)
-++.|..+|||.|+..+..|++
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~ 43 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKK 43 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHH
Confidence 4557899999999988777654
No 181
>PHA03075 glutaredoxin-like protein; Provisional
Probab=92.31 E-value=0.18 Score=37.90 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=27.9
Q ss_pred CCEEEEecCCCchHHHHHHHHHhcCCCcEEEEc
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIEL 114 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDI 114 (126)
..+++|+|+.|+-|+-+.++|++..-+|++.-|
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrV 35 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRV 35 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEE
Confidence 357899999999999999999888877866554
No 182
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=92.14 E-value=0.29 Score=31.32 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=26.4
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccCC
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~ 117 (126)
.+|..+.|+ |.+++-+|..+|++|+.+++|..
T Consensus 2 ~Ly~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~ 33 (77)
T cd03057 2 KLYYSPGAC-SLAPHIALEELGLPFELVRVDLR 33 (77)
T ss_pred EEEeCCCCc-hHHHHHHHHHcCCCceEEEEecc
Confidence 478877764 88999999999999998887753
No 183
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=92.05 E-value=0.32 Score=38.02 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=30.8
Q ss_pred HHHHHHhhhcCC---CE-EEEecCCCchHHHHHHHHHhcC-----CCcEEEEccC
Q 033133 71 LEESVKKTVSEN---PV-VVYSKTWCSYSSEVKLLFKRLG-----VEPLVIELDE 116 (126)
Q Consensus 71 ~~~~V~~lI~~~---~V-vVYSKs~CPYC~kAK~LL~~~g-----V~y~vIDID~ 116 (126)
..++++...+.. .| +-|..+||+.|+.....|+++- +.|..||++.
T Consensus 89 ~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~ 143 (192)
T cd02988 89 KPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ 143 (192)
T ss_pred HHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH
Confidence 356776666543 34 4599999999999888876553 4455555543
No 184
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=91.80 E-value=0.1 Score=38.57 Aligned_cols=45 Identities=18% Similarity=0.482 Sum_probs=22.3
Q ss_pred HHHHHHhhhcC-CCEE-EE-------ecCCCchHHHHH----HHHHhcCCC--cEEEEcc
Q 033133 71 LEESVKKTVSE-NPVV-VY-------SKTWCSYSSEVK----LLFKRLGVE--PLVIELD 115 (126)
Q Consensus 71 ~~~~V~~lI~~-~~Vv-VY-------SKs~CPYC~kAK----~LL~~~gV~--y~vIDID 115 (126)
..+.+++..+. .++. +| +++|||+|.+|+ +.|....-+ +..+++.
T Consensus 8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG 67 (119)
T PF06110_consen 8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVG 67 (119)
T ss_dssp HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE--
T ss_pred HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcC
Confidence 35555554433 3444 33 357999999987 445553223 3444553
No 185
>PTZ00102 disulphide isomerase; Provisional
Probab=91.76 E-value=0.25 Score=41.58 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=26.2
Q ss_pred CCEEEEecCCCchHHHHHHHHH-------hcC--CCcEEEEccCCchhHH
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFK-------RLG--VEPLVIELDEMGMRLS 122 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~-------~~g--V~y~vIDID~~~ea~~ 122 (126)
.-++.|..+|||+|++....+. +.+ +.+-.+|.+++.+..+
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~ 100 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQ 100 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHH
Confidence 3566899999999997764433 222 4455666666655443
No 186
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.56 E-value=0.18 Score=35.25 Aligned_cols=24 Identities=13% Similarity=0.360 Sum_probs=19.0
Q ss_pred CCCEEEEecCCCchHHHHHHHHHh
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLFKR 104 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL~~ 104 (126)
...|++|.-.+||||.+....+.+
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 457889999999999988665544
No 187
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=91.55 E-value=0.33 Score=43.14 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=26.2
Q ss_pred CEEEEecCCCchHHHHHHHHHhc-------CCCcEEEEccCCc
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDEMG 118 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~-------gV~y~vIDID~~~ 118 (126)
-++.|..+|||+|+..+..|++. ++.+..+|+|.++
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~ 416 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ 416 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc
Confidence 35579999999999887776543 3455667887654
No 188
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=91.29 E-value=0.33 Score=31.39 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=25.9
Q ss_pred ecCCCchHHHHHHHHHhcCCCcEEEEccCC
Q 033133 88 SKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 88 SKs~CPYC~kAK~LL~~~gV~y~vIDID~~ 117 (126)
-+.+||+|++++-+|..+|++|+.++++-.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~ 35 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLY 35 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 356899999999999999999998887643
No 189
>PTZ00102 disulphide isomerase; Provisional
Probab=90.96 E-value=0.36 Score=40.71 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=25.4
Q ss_pred CEEEEecCCCchHHHHHHHHHhcC--------CCcEEEEccCCch
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLG--------VEPLVIELDEMGM 119 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~g--------V~y~vIDID~~~e 119 (126)
-++.|..+||++|++.+..|++.. +.+..+|.|.++.
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~ 422 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET 422 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc
Confidence 455788999999998887776532 3345566665543
No 190
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=90.94 E-value=0.22 Score=31.60 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=18.7
Q ss_pred EEEEecCCCchHHHHHHHHHhc
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRL 105 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~ 105 (126)
|.+|....||||..+...|++.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 5689999999999998887764
No 191
>PLN02309 5'-adenylylsulfate reductase
Probab=90.91 E-value=0.33 Score=43.03 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=24.8
Q ss_pred CCEEEEecCCCchHHHHHHHHHhc-------CCCcEEEEcc
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELD 115 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~~-------gV~y~vIDID 115 (126)
.-++.|..+|||+|++.+..|++. ++.+-.+|.|
T Consensus 367 ~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 367 PWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 356799999999999887777544 3445666666
No 192
>PTZ00056 glutathione peroxidase; Provisional
Probab=90.84 E-value=0.31 Score=37.92 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=11.8
Q ss_pred CEEEEecCCCchHHH
Q 033133 83 PVVVYSKTWCSYSSE 97 (126)
Q Consensus 83 ~VvVYSKs~CPYC~k 97 (126)
-++.|..+|||+|.+
T Consensus 42 vlv~fwAswC~~C~~ 56 (199)
T PTZ00056 42 LMITNSASKCGLTKK 56 (199)
T ss_pred EEEEEECCCCCChHH
Confidence 345788899999985
No 193
>PLN02473 glutathione S-transferase
Probab=90.84 E-value=0.41 Score=36.10 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=29.5
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
+.+|+.+.+|+|.+++-+|..+|++|+.+.+|.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~ 35 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDL 35 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecC
Confidence 468999999999999999999999998887764
No 194
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=90.62 E-value=0.42 Score=33.38 Aligned_cols=36 Identities=28% Similarity=0.282 Sum_probs=19.7
Q ss_pred CCCEEEEe--cCCCchHHHH-------HHHHHhcCCCcEEEEccC
Q 033133 81 ENPVVVYS--KTWCSYSSEV-------KLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 81 ~~~VvVYS--Ks~CPYC~kA-------K~LL~~~gV~y~vIDID~ 116 (126)
.+.++|+. ..|||+|... .+-|.+.|+....|-+|.
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~ 67 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDS 67 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 44455443 5789999743 222344566555555553
No 195
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=90.17 E-value=0.37 Score=32.76 Aligned_cols=36 Identities=28% Similarity=0.539 Sum_probs=20.2
Q ss_pred CCEEEEecC-CCchHHHHH----HHH---HhcCCCcEEEEccCC
Q 033133 82 NPVVVYSKT-WCSYSSEVK----LLF---KRLGVEPLVIELDEM 117 (126)
Q Consensus 82 ~~VvVYSKs-~CPYC~kAK----~LL---~~~gV~y~vIDID~~ 117 (126)
.-|+.|..+ |||+|.+.- ++. ++.|+.+..|..|..
T Consensus 27 ~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~ 70 (124)
T PF00578_consen 27 PVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP 70 (124)
T ss_dssp EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred cEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence 344455555 999997443 333 334565556665543
No 196
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=89.98 E-value=0.46 Score=34.73 Aligned_cols=42 Identities=7% Similarity=0.061 Sum_probs=29.5
Q ss_pred CEEEEecCC-Cc--hHH----------HHHHHHHhcCCCcEEEEccCCchhHHHh
Q 033133 83 PVVVYSKTW-CS--YSS----------EVKLLFKRLGVEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 83 ~VvVYSKs~-CP--YC~----------kAK~LL~~~gV~y~vIDID~~~ea~~em 124 (126)
.|++|..+| |+ +|+ .|.+.|++.++.+-.+|+|++++.+++.
T Consensus 29 ~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~ 83 (120)
T cd03065 29 LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKL 83 (120)
T ss_pred eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHc
Confidence 566665554 54 497 3456666778999999999988876653
No 197
>PRK10357 putative glutathione S-transferase; Provisional
Probab=88.92 E-value=0.64 Score=34.72 Aligned_cols=32 Identities=6% Similarity=0.087 Sum_probs=29.0
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
.+|+...||+++++.-+|+.+|++|+.++++.
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~ 33 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELP 33 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCC
Confidence 57889999999999999999999999888874
No 198
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.81 E-value=0.71 Score=39.40 Aligned_cols=55 Identities=18% Similarity=0.358 Sum_probs=38.3
Q ss_pred chHHHHHHhhhcCCCEE-EEecCCCchHHHHHHHHHhcCC------CcEEEEccCCchhHHH
Q 033133 69 SRLEESVKKTVSENPVV-VYSKTWCSYSSEVKLLFKRLGV------EPLVIELDEMGMRLSV 123 (126)
Q Consensus 69 ~~~~~~V~~lI~~~~Vv-VYSKs~CPYC~kAK~LL~~~gV------~y~vIDID~~~ea~~e 123 (126)
...++-|.+--...+|+ -|..+||+-|+.....|++.-. ..-.+|+|++++-..+
T Consensus 31 anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaq 92 (304)
T COG3118 31 ANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQ 92 (304)
T ss_pred hHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHH
Confidence 34455666656665665 5777999999999888876533 3367888888776554
No 199
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=88.57 E-value=0.46 Score=34.62 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=9.9
Q ss_pred EEEEecCCCchHHHH
Q 033133 84 VVVYSKTWCSYSSEV 98 (126)
Q Consensus 84 VvVYSKs~CPYC~kA 98 (126)
|+.|..+||| |.+-
T Consensus 26 vl~fwatwC~-C~~e 39 (152)
T cd00340 26 LIVNVASKCG-FTPQ 39 (152)
T ss_pred EEEEEcCCCC-chHH
Confidence 3457788888 8764
No 200
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=0.8 Score=34.60 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=29.7
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccCCc
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG 118 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ 118 (126)
.+|+...+|||.++.-+|.++|++|+.+.+|...
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~ 35 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA 35 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc
Confidence 4778888899999999999999999988887663
No 201
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=88.45 E-value=0.83 Score=37.80 Aligned_cols=35 Identities=14% Similarity=0.381 Sum_probs=23.2
Q ss_pred CEEEEecCCCchHHHHHHHHHhc---------CCCcEEEEccCC
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL---------GVEPLVIELDEM 117 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~---------gV~y~vIDID~~ 117 (126)
-++.|..+||+.|++....+++. ++.+..+|++.+
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n 410 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN 410 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC
Confidence 35569999999999776666542 244455666544
No 202
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=88.19 E-value=1 Score=31.79 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=18.8
Q ss_pred CCEE-EEe-cCCCchHHHHHHHH-------HhcCCCcEEEEcc
Q 033133 82 NPVV-VYS-KTWCSYSSEVKLLF-------KRLGVEPLVIELD 115 (126)
Q Consensus 82 ~~Vv-VYS-Ks~CPYC~kAK~LL-------~~~gV~y~vIDID 115 (126)
+.++ +|. .+|||.|.+.-.-| .+.|+...-|..|
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 71 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD 71 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 4443 444 78999998543222 2335555555544
No 203
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=88.07 E-value=0.65 Score=32.48 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=12.6
Q ss_pred CCEEEEecCCCch-HHHH
Q 033133 82 NPVVVYSKTWCSY-SSEV 98 (126)
Q Consensus 82 ~~VvVYSKs~CPY-C~kA 98 (126)
.-|+.|..+|||+ |.+-
T Consensus 24 ~~vl~f~~~~C~~~C~~~ 41 (142)
T cd02968 24 PVLVYFGYTHCPDVCPTT 41 (142)
T ss_pred EEEEEEEcCCCcccCHHH
Confidence 3566778899998 9743
No 204
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=88.02 E-value=0.99 Score=31.37 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=21.6
Q ss_pred cCCCEEEEe--cCCCchHHHHHHH-------HHhcCCCcEEEEccC
Q 033133 80 SENPVVVYS--KTWCSYSSEVKLL-------FKRLGVEPLVIELDE 116 (126)
Q Consensus 80 ~~~~VvVYS--Ks~CPYC~kAK~L-------L~~~gV~y~vIDID~ 116 (126)
+.++++|+. ..|||+|...-.- |++.++.+..|..|.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 355555544 5799999864222 234566666666653
No 205
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=0.6 Score=39.44 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=40.4
Q ss_pred CCCEEEEecC------CCchHHHHHHHHHhcCCCcEEEEccCCchhHHHhhC
Q 033133 81 ENPVVVYSKT------WCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSVLIR 126 (126)
Q Consensus 81 ~~~VvVYSKs------~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~emi~ 126 (126)
++.||||..+ +--.|..++.+|++.+|.|.+.||.-+.+-++||.+
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~ 181 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQE 181 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHH
Confidence 5689999874 477899999999999999999999998888888853
No 206
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=87.88 E-value=2.3 Score=29.43 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=19.4
Q ss_pred HHHHHhhhcCCC-EE-EEecCCCchHHHHH-HHHHh
Q 033133 72 EESVKKTVSENP-VV-VYSKTWCSYSSEVK-LLFKR 104 (126)
Q Consensus 72 ~~~V~~lI~~~~-Vv-VYSKs~CPYC~kAK-~LL~~ 104 (126)
++-++...++++ ++ .+..+||++|++.+ +.|.+
T Consensus 7 ~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~ 42 (114)
T cd02958 7 EDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSN 42 (114)
T ss_pred HHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCC
Confidence 333444444443 33 56789999999764 45543
No 207
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=87.66 E-value=0.98 Score=35.15 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=30.4
Q ss_pred HhhhcCCCEE-EEecCCCchHH----HHHHHHHh---cCCCcEEEEccCCchhHH
Q 033133 76 KKTVSENPVV-VYSKTWCSYSS----EVKLLFKR---LGVEPLVIELDEMGMRLS 122 (126)
Q Consensus 76 ~~lI~~~~Vv-VYSKs~CPYC~----kAK~LL~~---~gV~y~vIDID~~~ea~~ 122 (126)
.+..+.+-|. .||..|||-|+ ..|+++++ .+-++++|=|+.+.+..+
T Consensus 28 ~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~ 82 (157)
T KOG2501|consen 28 SEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEES 82 (157)
T ss_pred hHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHH
Confidence 3334443333 67889999999 44666554 455588888877766544
No 208
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=87.65 E-value=0.57 Score=32.83 Aligned_cols=20 Identities=5% Similarity=0.039 Sum_probs=14.7
Q ss_pred CEEEEecCCCchHHHHHHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLF 102 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL 102 (126)
-|+.|..+|||+|.+.-.-|
T Consensus 26 vvl~F~a~~C~~C~~~~p~l 45 (126)
T cd03012 26 VLLDFWTYCCINCLHTLPYL 45 (126)
T ss_pred EEEEEECCCCccHHHHHHHH
Confidence 46678889999999764333
No 209
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=87.51 E-value=0.55 Score=33.99 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=18.6
Q ss_pred CCCEEEEecCCCchHHHHHHHHH
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLFK 103 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL~ 103 (126)
...|+.|.-..||||.+....+.
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~ 38 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILE 38 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHH
Confidence 45788999999999998765554
No 210
>PTZ00256 glutathione peroxidase; Provisional
Probab=87.49 E-value=1 Score=34.14 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=18.1
Q ss_pred EEEecCCCchHHHHH----HHH---HhcCCCcEEEEc
Q 033133 85 VVYSKTWCSYSSEVK----LLF---KRLGVEPLVIEL 114 (126)
Q Consensus 85 vVYSKs~CPYC~kAK----~LL---~~~gV~y~vIDI 114 (126)
+++..+|||+|.+-- ++. ++.|+.+.-|..
T Consensus 46 v~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 356899999999633 232 334555555543
No 211
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=87.47 E-value=1.3 Score=29.05 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=29.5
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccCC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~ 117 (126)
..+|.....+-|.+++-+|...|++|+.+.+|..
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~ 35 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA 35 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH
Confidence 4688888889999999999999999998888753
No 212
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=86.88 E-value=1.3 Score=27.78 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=25.6
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
.+|+... ++|.+++-+|..+|++|+++.+|.
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~ 32 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDR 32 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCC
Confidence 4666665 779999999999999999888874
No 213
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=86.71 E-value=1.1 Score=39.72 Aligned_cols=52 Identities=8% Similarity=0.055 Sum_probs=34.9
Q ss_pred HHHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhc-----CCCcEEEEccCCchhHH
Q 033133 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEMGMRLS 122 (126)
Q Consensus 71 ~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~-----gV~y~vIDID~~~ea~~ 122 (126)
.++..+++.++-.+.+|..+.|+||..++++|++. .++++++|.+++++..+
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~ 413 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESET 413 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHh
Confidence 34445544333356678888999999999999874 35566777665554443
No 214
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=86.68 E-value=1.2 Score=33.97 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=23.0
Q ss_pred cCCCEEEEe--cCCCchHHHHH-------HHHHhcCCCcEEEEccC
Q 033133 80 SENPVVVYS--KTWCSYSSEVK-------LLFKRLGVEPLVIELDE 116 (126)
Q Consensus 80 ~~~~VvVYS--Ks~CPYC~kAK-------~LL~~~gV~y~vIDID~ 116 (126)
+.+.++||. .+|||.|.+-- +-|.+.|+...-|-.|.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 345566666 69999998632 23445577665565554
No 215
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=86.51 E-value=1.3 Score=33.64 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=27.3
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
+.+|..+ +|+|+++.-+|+++|++|+.+++|-
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~ 33 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDL 33 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecC
Confidence 3578776 6999999999999999999888764
No 216
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=86.33 E-value=0.69 Score=32.88 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=24.2
Q ss_pred CCCEEEEecCCCchHHHHH----HHHHhc----CCCcEEEEccCC
Q 033133 81 ENPVVVYSKTWCSYSSEVK----LLFKRL----GVEPLVIELDEM 117 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK----~LL~~~----gV~y~vIDID~~ 117 (126)
...|++|.-..||||.+.- ++++++ .+.+..+++...
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 4468899999999999774 334444 455666666443
No 217
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=86.29 E-value=1.4 Score=35.82 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=20.6
Q ss_pred CCEEEEecCCCchHHHHH-------HHHHhcCCCcEEEEc
Q 033133 82 NPVVVYSKTWCSYSSEVK-------LLFKRLGVEPLVIEL 114 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK-------~LL~~~gV~y~vIDI 114 (126)
.-|+.|..+|||+|.+-. +-++++|+.+.-|..
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 346688999999997532 223344555555554
No 218
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=86.01 E-value=1.5 Score=31.52 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=20.4
Q ss_pred cCCCEEEEec--CCCchHHHH-------HHHHHhcCCCcEEEEccC
Q 033133 80 SENPVVVYSK--TWCSYSSEV-------KLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 80 ~~~~VvVYSK--s~CPYC~kA-------K~LL~~~gV~y~vIDID~ 116 (126)
+.+.++|+-. .|||+|... .+-|++.|+.+.-|.+|.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4455555553 478999642 233445566555555553
No 219
>PLN02412 probable glutathione peroxidase
Probab=85.94 E-value=1.2 Score=33.24 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=11.6
Q ss_pred CCEE-EEecCCCchHHH
Q 033133 82 NPVV-VYSKTWCSYSSE 97 (126)
Q Consensus 82 ~~Vv-VYSKs~CPYC~k 97 (126)
+.|+ .|..+|||+|.+
T Consensus 30 k~vlv~f~a~~C~~c~~ 46 (167)
T PLN02412 30 KVLLIVNVASKCGLTDS 46 (167)
T ss_pred CEEEEEEeCCCCCChHH
Confidence 4444 477899999985
No 220
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=85.69 E-value=0.87 Score=34.01 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=27.7
Q ss_pred EEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 86 VYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
+|+-..||+|.+++-+|..+|++|+.+.++.
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 32 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNL 32 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEeccc
Confidence 6777889999999999999999999887773
No 221
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.97 E-value=0.78 Score=36.49 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=21.1
Q ss_pred HHHHhhhcCC--CEEEEecCCCchHHHHHHHH
Q 033133 73 ESVKKTVSEN--PVVVYSKTWCSYSSEVKLLF 102 (126)
Q Consensus 73 ~~V~~lI~~~--~VvVYSKs~CPYC~kAK~LL 102 (126)
+-.+.++..+ -+.||+..+|+||.+.|+-+
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~ 64 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDL 64 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhh
Confidence 3444444444 36699999999999887654
No 222
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=84.63 E-value=1.6 Score=32.43 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=21.9
Q ss_pred CCCEEEEe--cCCCchHHHHHHHH-------HhcCCCcEEEEccC
Q 033133 81 ENPVVVYS--KTWCSYSSEVKLLF-------KRLGVEPLVIELDE 116 (126)
Q Consensus 81 ~~~VvVYS--Ks~CPYC~kAK~LL-------~~~gV~y~vIDID~ 116 (126)
.+.++|+. .+|||.|...-.-| .+.|+....|.+|.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 45566555 68999999644333 34466555555553
No 223
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=84.57 E-value=0.91 Score=32.98 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=14.4
Q ss_pred CCC-EEEEecCCCchHHHHH
Q 033133 81 ENP-VVVYSKTWCSYSSEVK 99 (126)
Q Consensus 81 ~~~-VvVYSKs~CPYC~kAK 99 (126)
.+. |+.|..+|||+|.+.-
T Consensus 22 Gk~vvv~~~as~C~~c~~~~ 41 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNY 41 (153)
T ss_pred CCEEEEEEeCCCCCchhhhH
Confidence 444 5789999999997643
No 224
>PRK11752 putative S-transferase; Provisional
Probab=84.36 E-value=1.6 Score=34.97 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=31.0
Q ss_pred hhcCCCEEEEecCCCchHHHHHHHHHhc------CCCcEEEEccC
Q 033133 78 TVSENPVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDE 116 (126)
Q Consensus 78 lI~~~~VvVYSKs~CPYC~kAK~LL~~~------gV~y~vIDID~ 116 (126)
....+++.+|+. .+|+|+++.-+|+++ |++|+.+.+|-
T Consensus 39 ~~~~~~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~ 82 (264)
T PRK11752 39 PVGKHPLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRI 82 (264)
T ss_pred CCCCCCeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecC
Confidence 345668999996 599999999999986 88898877764
No 225
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=83.86 E-value=1.4 Score=34.60 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=30.9
Q ss_pred CCCEEEEecCCCchHHHHHHHH---HhcCCCc------EEEEccCCchhHH
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLF---KRLGVEP------LVIELDEMGMRLS 122 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL---~~~gV~y------~vIDID~~~ea~~ 122 (126)
.-.++-|..+|||.|++-.-+| ++.|++. ..|+.|+......
T Consensus 60 KV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~ 110 (184)
T TIGR01626 60 KVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTG 110 (184)
T ss_pred CEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHH
Confidence 3467889999999999765554 5567887 8888887654433
No 226
>smart00594 UAS UAS domain.
Probab=82.94 E-value=4.9 Score=28.51 Aligned_cols=33 Identities=6% Similarity=-0.072 Sum_probs=20.2
Q ss_pred HHHHHhhhcC--CCEEEEecCCCchHHHH-HHHHHh
Q 033133 72 EESVKKTVSE--NPVVVYSKTWCSYSSEV-KLLFKR 104 (126)
Q Consensus 72 ~~~V~~lI~~--~~VvVYSKs~CPYC~kA-K~LL~~ 104 (126)
++.+++..++ .-++.+..+||++|++. +++|.+
T Consensus 17 ~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~ 52 (122)
T smart00594 17 EAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCN 52 (122)
T ss_pred HHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccC
Confidence 4444444444 34556788999999864 344543
No 227
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=82.33 E-value=2.4 Score=31.17 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=20.6
Q ss_pred CEEEEecCCCchHHHH----HHHHHh---cCCCcEEEEccC
Q 033133 83 PVVVYSKTWCSYSSEV----KLLFKR---LGVEPLVIELDE 116 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kA----K~LL~~---~gV~y~vIDID~ 116 (126)
-|+.|..+|||.|.+. .++.++ .++.+.-|.+|.
T Consensus 28 ~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~ 68 (171)
T cd02969 28 LVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSND 68 (171)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCc
Confidence 4567788999999753 233333 345555666554
No 228
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=79.02 E-value=3 Score=34.23 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=25.6
Q ss_pred CCchHHHHHHHHHhcCCCc--EEEEccCCchhHH
Q 033133 91 WCSYSSEVKLLFKRLGVEP--LVIELDEMGMRLS 122 (126)
Q Consensus 91 ~CPYC~kAK~LL~~~gV~y--~vIDID~~~ea~~ 122 (126)
.||||++.-..|..+++.| ..||+.+.|+.+.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~ 53 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFL 53 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHHHH
Confidence 4999999999999999988 5667767776554
No 229
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=78.88 E-value=3.5 Score=32.00 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=36.0
Q ss_pred cCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHH
Q 033133 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLS 122 (126)
Q Consensus 80 ~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~ 122 (126)
....+++|-.++|.-|+.=-+.|+.+|++..+++.|......+
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~ 66 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKR 66 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHH
Confidence 3558999999999999999999999999998888876544443
No 230
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=77.80 E-value=4.4 Score=28.54 Aligned_cols=36 Identities=17% Similarity=0.069 Sum_probs=19.7
Q ss_pred CCCEE-EEecCC-CchHHHHHHHH----Hhc-CCCcEEEEccC
Q 033133 81 ENPVV-VYSKTW-CSYSSEVKLLF----KRL-GVEPLVIELDE 116 (126)
Q Consensus 81 ~~~Vv-VYSKs~-CPYC~kAK~LL----~~~-gV~y~vIDID~ 116 (126)
.+.++ .|..+| ||+|.+--.-| ++. |+.+..|.+|.
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~ 68 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADL 68 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCC
Confidence 44444 445556 79998654333 332 55555555554
No 231
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=77.28 E-value=4 Score=31.49 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=23.6
Q ss_pred CCEEE--EecCCCchHHHH-------HHHHHhcCCCcEEEEccCC
Q 033133 82 NPVVV--YSKTWCSYSSEV-------KLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 82 ~~VvV--YSKs~CPYC~kA-------K~LL~~~gV~y~vIDID~~ 117 (126)
+.+++ |-.+|||.|..- .+-|++.|+....+.+|..
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~ 70 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSV 70 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 44554 677999999853 3345666777666666653
No 232
>PRK13190 putative peroxiredoxin; Provisional
Probab=77.13 E-value=4 Score=31.63 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=22.7
Q ss_pred CCCEEE--EecCCCchHHHHH-------HHHHhcCCCcEEEEccCC
Q 033133 81 ENPVVV--YSKTWCSYSSEVK-------LLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 81 ~~~VvV--YSKs~CPYC~kAK-------~LL~~~gV~y~vIDID~~ 117 (126)
.+.+++ |-.+|||+|..-- +-|++.|+....+.+|..
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~ 72 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSI 72 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 445655 5789999998532 233456766666666543
No 233
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=74.82 E-value=2.8 Score=30.67 Aligned_cols=37 Identities=11% Similarity=-0.009 Sum_probs=25.0
Q ss_pred CEEEEecCCCchHHHHHH----HHHhc-CCCcEEEEccCCch
Q 033133 83 PVVVYSKTWCSYSSEVKL----LFKRL-GVEPLVIELDEMGM 119 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~----LL~~~-gV~y~vIDID~~~e 119 (126)
+|++|.-..||||..+.. +.++. +++.+..-+.-.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 478999999999986654 44555 67666655544333
No 234
>PLN02395 glutathione S-transferase
Probab=73.39 E-value=6.8 Score=29.37 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=27.1
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
+.+|+..+| ++.+++-+|..+|++|+.++++.
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~ 34 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDL 34 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEecc
Confidence 678987775 48999999999999999888764
No 235
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=70.36 E-value=6.9 Score=26.90 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=22.4
Q ss_pred EecCCCchHHHHHHHHHhcCC--CcEEEEc
Q 033133 87 YSKTWCSYSSEVKLLFKRLGV--EPLVIEL 114 (126)
Q Consensus 87 YSKs~CPYC~kAK~LL~~~gV--~y~vIDI 114 (126)
|--..||+|....+.+.+... .++.+++
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~ 31 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDI 31 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEEC
Confidence 445689999999999988864 4677887
No 236
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.73 E-value=4.6 Score=34.26 Aligned_cols=38 Identities=24% Similarity=0.489 Sum_probs=28.7
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCC-----cEEEEccCCchh
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVE-----PLVIELDEMGMR 120 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~-----y~vIDID~~~ea 120 (126)
-||=|+.+||.-|++.--+|.++.-+ |-.||+|+-.+.
T Consensus 24 v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~t 66 (288)
T KOG0908|consen 24 VVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGT 66 (288)
T ss_pred EEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhch
Confidence 45679999999999998888776443 467888765443
No 237
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=69.66 E-value=13 Score=28.07 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=32.3
Q ss_pred cCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhH
Q 033133 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRL 121 (126)
Q Consensus 80 ~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~ 121 (126)
++.+|++|..++|+.+.++-..|.+.|.+ .+..++..-+++
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~-~V~~l~GG~~aW 155 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS-NVYWYPDGTDGW 155 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc-ceEEecCCHHHH
Confidence 66899999999999999999999999975 345555544443
No 238
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=69.37 E-value=8.4 Score=30.64 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=44.7
Q ss_pred chHHHHHHhhhcCCCEEEEecC-----CCchHHHHHHHHHhc------CCCcEEEEccCCchhHHH
Q 033133 69 SRLEESVKKTVSENPVVVYSKT-----WCSYSSEVKLLFKRL------GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 69 ~~~~~~V~~lI~~~~VvVYSKs-----~CPYC~kAK~LL~~~------gV~y~vIDID~~~ea~~e 123 (126)
...++.++++-++-.|.+|... .=++=..++++|+++ +++++++|.+..|+..++
T Consensus 14 ~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~ 79 (271)
T PF09822_consen 14 DQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEE 79 (271)
T ss_pred HHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHH
Confidence 3457778887777788888888 677888999999987 688999999888887766
No 239
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=68.69 E-value=11 Score=31.20 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=26.5
Q ss_pred HhhhcCCCEEEE--ecCCCchHHH-------HHHHHHhcCCCcEEEEccC
Q 033133 76 KKTVSENPVVVY--SKTWCSYSSE-------VKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 76 ~~lI~~~~VvVY--SKs~CPYC~k-------AK~LL~~~gV~y~vIDID~ 116 (126)
.+..+.+.|++| -.+|||.|.. ..+-|++.|++..-|-+|.
T Consensus 93 sd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 93 SDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 344455667766 4689999986 3444566677666666654
No 240
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=67.67 E-value=5 Score=36.33 Aligned_cols=21 Identities=10% Similarity=0.333 Sum_probs=16.2
Q ss_pred EEEEecCCCchHHHHHHHHHh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKR 104 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~ 104 (126)
|+-|..+|||.|++....|++
T Consensus 60 vV~FWATWCppCk~emP~L~e 80 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEK 80 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHH
Confidence 557889999999987655543
No 241
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=66.96 E-value=5.8 Score=27.99 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=16.8
Q ss_pred CEEEEecCCCchHHH--HHHHHH
Q 033133 83 PVVVYSKTWCSYSSE--VKLLFK 103 (126)
Q Consensus 83 ~VvVYSKs~CPYC~k--AK~LL~ 103 (126)
+|.||.-+.||+|++ .++|+.
T Consensus 2 ~v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEEecCHhHHHHHHHHHHH
Confidence 588999999999997 455553
No 242
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=65.09 E-value=8.1 Score=25.38 Aligned_cols=25 Identities=16% Similarity=-0.024 Sum_probs=21.5
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEc
Q 033133 90 TWCSYSSEVKLLFKRLGVEPLVIEL 114 (126)
Q Consensus 90 s~CPYC~kAK~LL~~~gV~y~vIDI 114 (126)
+..|+|.++..+|+-.|++|+++..
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~ 38 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPS 38 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEec
Confidence 4579999999999999999987643
No 243
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=61.78 E-value=6.6 Score=33.33 Aligned_cols=24 Identities=4% Similarity=0.264 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHhcCCCcEEEEcc
Q 033133 92 CSYSSEVKLLFKRLGVEPLVIELD 115 (126)
Q Consensus 92 CPYC~kAK~LL~~~gV~y~vIDID 115 (126)
-|||-+++-+|+..+++|++++-.
T Consensus 61 SPfClKvEt~lR~~~IpYE~~~~~ 84 (281)
T KOG4244|consen 61 SPFCLKVETFLRAYDIPYEIVDCS 84 (281)
T ss_pred ChHHHHHHHHHHHhCCCceecccc
Confidence 479999999999999999888643
No 244
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=59.91 E-value=15 Score=25.75 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=24.4
Q ss_pred HHHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhc
Q 033133 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL 105 (126)
Q Consensus 71 ~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~ 105 (126)
.++..+++-++-.+++|.... ++|..++++|++.
T Consensus 10 L~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~ 43 (94)
T cd02974 10 LKAYLERLENPVELVASLDDS-EKSAELLELLEEI 43 (94)
T ss_pred HHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHH
Confidence 344555555555566787777 9999999999865
No 245
>PRK13189 peroxiredoxin; Provisional
Probab=59.63 E-value=17 Score=28.79 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=23.0
Q ss_pred cCCCEEE--EecCCCchHHH-------HHHHHHhcCCCcEEEEccCC
Q 033133 80 SENPVVV--YSKTWCSYSSE-------VKLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 80 ~~~~VvV--YSKs~CPYC~k-------AK~LL~~~gV~y~vIDID~~ 117 (126)
+.+.+++ |-.+|||.|.. ..+-|++.|+...-+.+|..
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~ 80 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQV 80 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 3444554 56799999984 22334556766555655543
No 246
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=59.57 E-value=9.5 Score=27.88 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=19.1
Q ss_pred EEEEecCCCchHHHHHHHHH----hcCCCcE
Q 033133 84 VVVYSKTWCSYSSEVKLLFK----RLGVEPL 110 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~----~~gV~y~ 110 (126)
|.+|+-.-||||--++..|+ +.+++.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~ 31 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVR 31 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeE
Confidence 45889999999987766655 4455443
No 247
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=58.15 E-value=5 Score=36.31 Aligned_cols=27 Identities=15% Similarity=0.467 Sum_probs=20.7
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCc
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEP 109 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y 109 (126)
-.+-|..+||++|++.+-.+++++-.|
T Consensus 387 VLvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 387 VLVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred eEEEEcCcccchhhhhhhHHHHHHHHh
Confidence 345789999999999987777765443
No 248
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=58.07 E-value=19 Score=26.79 Aligned_cols=17 Identities=6% Similarity=-0.091 Sum_probs=10.5
Q ss_pred CEEEEecCC-CchHHHHH
Q 033133 83 PVVVYSKTW-CSYSSEVK 99 (126)
Q Consensus 83 ~VvVYSKs~-CPYC~kAK 99 (126)
-|+.|..+| ||.|.+--
T Consensus 47 vvl~f~~s~~cp~C~~e~ 64 (167)
T PRK00522 47 KVLNIFPSIDTGVCATSV 64 (167)
T ss_pred EEEEEEcCCCCCccHHHH
Confidence 344555566 88897643
No 249
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.63 E-value=7.3 Score=28.60 Aligned_cols=21 Identities=10% Similarity=0.349 Sum_probs=16.6
Q ss_pred CEEEEecCCCchHHHHHHHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFK 103 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~ 103 (126)
+|.+|.-..||||-.+.+.|+
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 478999999999986655554
No 250
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=57.06 E-value=12 Score=32.78 Aligned_cols=31 Identities=23% Similarity=0.630 Sum_probs=24.1
Q ss_pred HHhhhcCCCEE--EEecCCCchHHHHHHHHHhc
Q 033133 75 VKKTVSENPVV--VYSKTWCSYSSEVKLLFKRL 105 (126)
Q Consensus 75 V~~lI~~~~Vv--VYSKs~CPYC~kAK~LL~~~ 105 (126)
++.++..+.++ =|..+||||.++.+-+|.+.
T Consensus 6 ~~~il~s~elvfv~FyAdWCrFSq~L~piF~EA 38 (375)
T KOG0912|consen 6 IDSILDSNELVFVNFYADWCRFSQMLKPIFEEA 38 (375)
T ss_pred HHHhhccceEEeeeeehhhchHHHHHhHHHHHH
Confidence 45566666655 68899999999999888754
No 251
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=56.51 E-value=7.4 Score=29.99 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=16.6
Q ss_pred CCCEEEEecCCCchHHHHHH
Q 033133 81 ENPVVVYSKTWCSYSSEVKL 100 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~ 100 (126)
...|+-|..-+||+|.+...
T Consensus 38 ~~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CCeEEEEeCCCCccHHHhcc
Confidence 44699999999999998653
No 252
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=56.46 E-value=18 Score=23.38 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=23.1
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
+.+|.-++ .|.+++-+|+..|++|+.+.+|-
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~ 33 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDF 33 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEET
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEec
Confidence 45666666 88899999999999998877763
No 253
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=56.44 E-value=36 Score=24.02 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=33.9
Q ss_pred hhhcCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHH
Q 033133 77 KTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 77 ~lI~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~e 123 (126)
.+-++.+|++|.......+.++-.+|+..|++ +..++..-.++.+
T Consensus 82 ~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~GG~~aw~~ 126 (128)
T cd01520 82 RLERDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLEGGYKAYRK 126 (128)
T ss_pred ccCCCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeCCcHHHHHh
Confidence 34456789999987777888888999999984 7777766555543
No 254
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=56.00 E-value=14 Score=28.22 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=22.1
Q ss_pred CEEEEecCCCchHHHHHHHHH----hcCCCc--EEEEc
Q 033133 83 PVVVYSKTWCSYSSEVKLLFK----RLGVEP--LVIEL 114 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~----~~gV~y--~vIDI 114 (126)
+|.+|+-.-||||--+++-|+ ..+++. .-++|
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 577999999999987766654 445543 34444
No 255
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=55.59 E-value=16 Score=28.35 Aligned_cols=40 Identities=15% Similarity=0.360 Sum_probs=18.9
Q ss_pred CCCEE-EEecCCCchHHHH-HHHHHhcCC------Cc--EEEEccCCchh
Q 033133 81 ENPVV-VYSKTWCSYSSEV-KLLFKRLGV------EP--LVIELDEMGMR 120 (126)
Q Consensus 81 ~~~Vv-VYSKs~CPYC~kA-K~LL~~~gV------~y--~vIDID~~~ea 120 (126)
+++|. -.+.+||.||+.. ++.|++..| .| ..+|-|+.|+.
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdi 86 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDI 86 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHH
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccH
Confidence 44555 4567999999844 344444332 23 44566666664
No 256
>PRK13599 putative peroxiredoxin; Provisional
Probab=54.39 E-value=17 Score=28.70 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=22.0
Q ss_pred cCCCEE--EEecCCCchHHH-------HHHHHHhcCCCcEEEEccC
Q 033133 80 SENPVV--VYSKTWCSYSSE-------VKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 80 ~~~~Vv--VYSKs~CPYC~k-------AK~LL~~~gV~y~vIDID~ 116 (126)
+.+.++ -|-.+|||.|.. ..+-|++.|+...-+.+|.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 344443 456788999985 3334455676655555554
No 257
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=53.44 E-value=42 Score=24.74 Aligned_cols=46 Identities=13% Similarity=0.030 Sum_probs=34.8
Q ss_pred HHHHHHhh-hcCCCEEEEecCCCchHH------------HHHHHHHhcCCCcEEEEccC
Q 033133 71 LEESVKKT-VSENPVVVYSKTWCSYSS------------EVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 71 ~~~~V~~l-I~~~~VvVYSKs~CPYC~------------kAK~LL~~~gV~y~vIDID~ 116 (126)
+.+.++++ -+.+.|++.|......+. .+++.|++++++|..+.+.+
T Consensus 29 ~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 29 VIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 35556555 345678888888887777 88999999999998777755
No 258
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=53.44 E-value=11 Score=29.26 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=17.3
Q ss_pred CEEEEecCCCchHHHHHHHHHhc
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL 105 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~ 105 (126)
.+.+|..+.||||+++-+.+...
T Consensus 121 ~~~~f~~~~~~~~~~a~~~~~~~ 143 (244)
T COG1651 121 REFPFLDPACPYCRRAAQAARCA 143 (244)
T ss_pred EEeecCCCCcHHHHHHHHHHHHh
Confidence 44588889999998887666544
No 259
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=53.35 E-value=21 Score=24.02 Aligned_cols=24 Identities=13% Similarity=-0.157 Sum_probs=21.5
Q ss_pred CCchHHHHHHHHHhcCCCcEEEEc
Q 033133 91 WCSYSSEVKLLFKRLGVEPLVIEL 114 (126)
Q Consensus 91 ~CPYC~kAK~LL~~~gV~y~vIDI 114 (126)
..++|.++.-+|+..|++|+.++.
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~ 39 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCR 39 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEec
Confidence 467899999999999999998875
No 260
>PTZ00057 glutathione s-transferase; Provisional
Probab=53.14 E-value=31 Score=26.01 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=29.8
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
++++|..+.-+.|.+++-+|+..|++|+.+.++.
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~ 37 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE 37 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc
Confidence 4778988888999999999999999999987754
No 261
>PRK15000 peroxidase; Provisional
Probab=52.73 E-value=27 Score=27.11 Aligned_cols=18 Identities=6% Similarity=0.095 Sum_probs=10.6
Q ss_pred cCCCEEEEecC--CCchHHH
Q 033133 80 SENPVVVYSKT--WCSYSSE 97 (126)
Q Consensus 80 ~~~~VvVYSKs--~CPYC~k 97 (126)
+.+.|++|.-+ |||-|..
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~ 52 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPS 52 (200)
T ss_pred CCCEEEEEEECCCCCCCCHH
Confidence 34455555544 6788875
No 262
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=52.67 E-value=60 Score=20.88 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=31.1
Q ss_pred HHHHhhhcCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCch
Q 033133 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGM 119 (126)
Q Consensus 73 ~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~e 119 (126)
+.+..+-++.+|++|.. .+..+.++-..|.+.|.+- ++.++..-+
T Consensus 48 ~~~~~~~~~~~ivv~c~-~g~~s~~a~~~l~~~G~~~-v~~l~gG~~ 92 (96)
T cd01444 48 DWLGDLDRDRPVVVYCY-HGNSSAQLAQALREAGFTD-VRSLAGGFE 92 (96)
T ss_pred HHHhhcCCCCCEEEEeC-CCChHHHHHHHHHHcCCce-EEEcCCCHH
Confidence 34444446778999888 7788888888999998742 345554433
No 263
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=52.59 E-value=20 Score=31.43 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=23.4
Q ss_pred HHHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhc
Q 033133 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL 105 (126)
Q Consensus 71 ~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~ 105 (126)
.++..++|.++-.+++|.. .|+||..++++|++.
T Consensus 10 l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (515)
T TIGR03140 10 LKSYLASLENPVTLVLSAG-SHEKSKELLELLDEI 43 (515)
T ss_pred HHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHH
Confidence 3445555444445555666 699999999999876
No 264
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=52.09 E-value=24 Score=27.31 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=20.6
Q ss_pred CCCEEEE-e-cCCCchHHH-------HHHHHHhcCCCcEEEEccC
Q 033133 81 ENPVVVY-S-KTWCSYSSE-------VKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 81 ~~~VvVY-S-Ks~CPYC~k-------AK~LL~~~gV~y~vIDID~ 116 (126)
.+.|++| . ..|||-|.. ..+-|++.|+...-|..|.
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~ 75 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 75 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 3455544 3 699999986 2333445566555555443
No 265
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=50.91 E-value=13 Score=28.89 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=12.8
Q ss_pred CCEEEEecCCCchHHH
Q 033133 82 NPVVVYSKTWCSYSSE 97 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~k 97 (126)
.-+++|..+||++|..
T Consensus 27 vvLVvf~AS~C~~~~q 42 (183)
T PRK10606 27 VLLIVNVASKCGLTPQ 42 (183)
T ss_pred EEEEEEEeCCCCCcHH
Confidence 3456899999999974
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=50.80 E-value=13 Score=36.11 Aligned_cols=21 Identities=10% Similarity=0.078 Sum_probs=15.5
Q ss_pred CEEEEecCCCchHHHHHHHHH
Q 033133 83 PVVVYSKTWCSYSSEVKLLFK 103 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~ 103 (126)
-|+-|..+|||.|++..-.|+
T Consensus 423 vll~FWAsWC~pC~~e~P~L~ 443 (1057)
T PLN02919 423 VILDFWTYCCINCMHVLPDLE 443 (1057)
T ss_pred EEEEEECCcChhHHhHhHHHH
Confidence 345788999999997655554
No 267
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=50.59 E-value=71 Score=21.09 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=31.6
Q ss_pred HHHHHhhh-cCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHHH
Q 033133 72 EESVKKTV-SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 72 ~~~V~~lI-~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~e 123 (126)
.+.+++.. ...+++||..+ ...|.++++.|++.+..+..+.=+..++.+.+
T Consensus 18 ~~~i~~~~~~~~~~lvf~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 69 (131)
T cd00079 18 LELLKEHLKKGGKVLIFCPS-KKMLDELAELLRKPGIKVAALHGDGSQEEREE 69 (131)
T ss_pred HHHHHhcccCCCcEEEEeCc-HHHHHHHHHHHHhcCCcEEEEECCCCHHHHHH
Confidence 44555554 35678888654 67788888888887666655554433444433
No 268
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=48.78 E-value=19 Score=30.31 Aligned_cols=25 Identities=16% Similarity=0.394 Sum_probs=18.7
Q ss_pred hcCCCEEEEecCCCchHHHHHHHHH
Q 033133 79 VSENPVVVYSKTWCSYSSEVKLLFK 103 (126)
Q Consensus 79 I~~~~VvVYSKs~CPYC~kAK~LL~ 103 (126)
-...-++.|..+||+.|.+...-+.
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~ 70 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYK 70 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHH
Confidence 3456788999999999997654443
No 269
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=48.74 E-value=13 Score=30.78 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=16.0
Q ss_pred EEEEecCCCchHHHHHHH----HHhcCC
Q 033133 84 VVVYSKTWCSYSSEVKLL----FKRLGV 107 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~L----L~~~gV 107 (126)
|+-.+..|||||...+-. |.+.|-
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred EEEEecccCccchhhHHHHHHHHHhcCC
Confidence 334467889999977644 456653
No 270
>COG4052 Uncharacterized protein related to methyl coenzyme M reductase subunit C [General function prediction only]
Probab=48.60 E-value=7.5 Score=32.94 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=49.7
Q ss_pred Eeeeeeecchhh-HHHHhhhcc---chHHHHHHhhhcCCCEEEEecCCCchHHHHH--HHHHhcCCCc------EEEEcc
Q 033133 48 VNGRRRRYGAVS-VQAMASSYG---SRLEESVKKTVSENPVVVYSKTWCSYSSEVK--LLFKRLGVEP------LVIELD 115 (126)
Q Consensus 48 ~~~~~~~~~~~~-~~~m~s~~g---~~~~~~V~~lI~~~~VvVYSKs~CPYC~kAK--~LL~~~gV~y------~vIDID 115 (126)
+.+..|++++.+ +-.++.++| ++..++=+++|++|++.||+--.--.|.+-| .||+...++. +.+|++
T Consensus 94 iaEYLRr~GAk~NmIGLARG~Gr~is~l~e~ErrLieEHDlavf~~GsF~dCI~~~K~~Lf~~i~iPvvVtGgPeeid~~ 173 (310)
T COG4052 94 IAEYLRRPGAKTNMIGLARGMGRRISQLREYERRLIEEHDLAVFVFGSFEDCIKKKKPHLFEGIEIPVVVTGGPEEIDTE 173 (310)
T ss_pred HHHHHhccCCCcchhhhhhhccchhHHHHHHHHHhhhhcceEEEEecCHHHHHhhcCCcccccccccEEEeCCcccccCC
Confidence 344556666653 233345555 4567788999999999999999999998774 4677666653 566766
Q ss_pred CCchh
Q 033133 116 EMGMR 120 (126)
Q Consensus 116 ~~~ea 120 (126)
.-|.+
T Consensus 174 D~pga 178 (310)
T COG4052 174 DVPGA 178 (310)
T ss_pred CCCCc
Confidence 54443
No 271
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=48.56 E-value=49 Score=26.84 Aligned_cols=36 Identities=6% Similarity=-0.039 Sum_probs=25.1
Q ss_pred cCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEcc
Q 033133 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (126)
Q Consensus 80 ~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID 115 (126)
....+.+|.|..||-|...-.-+..-+-++.++-|+
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvg 143 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVG 143 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEec
Confidence 345788999999999986554444455556555555
No 272
>COG1631 RPL42A Ribosomal protein L44E [Translation, ribosomal structure and biogenesis]
Probab=48.08 E-value=5 Score=29.04 Aligned_cols=9 Identities=33% Similarity=1.125 Sum_probs=7.5
Q ss_pred cCCCchHHH
Q 033133 89 KTWCSYSSE 97 (126)
Q Consensus 89 Ks~CPYC~k 97 (126)
++|||||.+
T Consensus 8 ~tyCp~Ckk 16 (94)
T COG1631 8 RTYCPYCKK 16 (94)
T ss_pred eecCccccc
Confidence 579999974
No 273
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=47.63 E-value=22 Score=27.44 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=17.8
Q ss_pred CCCEEEEecCCCchHHHHHHHHHh
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLFKR 104 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL~~ 104 (126)
...|++|.--.||||.+.-.-+++
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 567889999999999655444433
No 274
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=47.32 E-value=12 Score=27.69 Aligned_cols=20 Identities=15% Similarity=0.296 Sum_probs=15.2
Q ss_pred EEEEecCCCchHHHHHHHHH
Q 033133 84 VVVYSKTWCSYSSEVKLLFK 103 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~ 103 (126)
|.+|+-.-||||.-+..-|+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~ 20 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLE 20 (201)
T ss_pred CeEEecCcCccHHHHHHHHH
Confidence 45899999999996654443
No 275
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=46.55 E-value=29 Score=26.52 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=20.1
Q ss_pred CCCEEEEec--CCCchHHHH-------HHHHHhcCCCcEEEEccCC
Q 033133 81 ENPVVVYSK--TWCSYSSEV-------KLLFKRLGVEPLVIELDEM 117 (126)
Q Consensus 81 ~~~VvVYSK--s~CPYC~kA-------K~LL~~~gV~y~vIDID~~ 117 (126)
.+.+++|.- .|||.|... .+-|++.|++...|..|..
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 334444443 567777642 2334555776666666644
No 276
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=46.51 E-value=23 Score=30.93 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=24.6
Q ss_pred HHHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhc
Q 033133 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL 105 (126)
Q Consensus 71 ~~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~ 105 (126)
.++..+++-++-.+++|.. .|++|..++++|++.
T Consensus 10 l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (517)
T PRK15317 10 LKQYLELLERPIELVASLD-DSEKSAELKELLEEI 43 (517)
T ss_pred HHHHHHhCCCCEEEEEEeC-CCchHHHHHHHHHHH
Confidence 3455555555555666766 799999999999876
No 277
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.90 E-value=9.9 Score=31.13 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=16.8
Q ss_pred CEEEEecCCCchHHHHHHHHHhc
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRL 105 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~ 105 (126)
.|.|||-.-||||-.-|+-|++.
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHH
Confidence 57799999999997555544443
No 278
>PRK13191 putative peroxiredoxin; Provisional
Probab=45.73 E-value=30 Score=27.28 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=22.9
Q ss_pred CCCEEE--EecCCCchHHHH-------HHHHHhcCCCcEEEEccCCc
Q 033133 81 ENPVVV--YSKTWCSYSSEV-------KLLFKRLGVEPLVIELDEMG 118 (126)
Q Consensus 81 ~~~VvV--YSKs~CPYC~kA-------K~LL~~~gV~y~vIDID~~~ 118 (126)
.+.+++ |-.+|||.|..- .+-|+++|++..-+.+|...
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~ 79 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNI 79 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 444554 467889999853 33345567666666666543
No 279
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=44.36 E-value=48 Score=21.75 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=20.5
Q ss_pred chHHHHHHHHHhcCCCcEEEEccC
Q 033133 93 SYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 93 PYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
+-|.+++-+|+..|++|+.+.++-
T Consensus 10 ~~~~~~~~~l~~~gi~~e~~~v~~ 33 (82)
T cd03075 10 GLAQPIRLLLEYTGEKYEEKRYEL 33 (82)
T ss_pred cccHHHHHHHHHcCCCcEEEEecc
Confidence 567889999999999998888764
No 280
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=43.49 E-value=23 Score=22.29 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=16.5
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEc
Q 033133 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIEL 114 (126)
Q Consensus 85 vVYSKs~CPYC~kAK~LL~~~gV~y~vIDI 114 (126)
.+|+...=.-+..+|.+|++.||++.+.+-
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S-
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECC
Confidence 345555545567888999999998766553
No 281
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=42.76 E-value=41 Score=30.57 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=31.1
Q ss_pred HHHHHhhhcCCCEE--EEecCCCchHH-------HHHHHHHhcCCCcEEEEccC
Q 033133 72 EESVKKTVSENPVV--VYSKTWCSYSS-------EVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 72 ~~~V~~lI~~~~Vv--VYSKs~CPYC~-------kAK~LL~~~gV~y~vIDID~ 116 (126)
.+-.++.|..+.++ -|-.+||..|+ +|-+.|.+.+-+...-.||-
T Consensus 32 ~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa 85 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA 85 (493)
T ss_pred cccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec
Confidence 44566677788765 68899999998 55667777755555555553
No 282
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=41.61 E-value=63 Score=27.17 Aligned_cols=38 Identities=8% Similarity=0.010 Sum_probs=27.1
Q ss_pred CCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCch
Q 033133 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGM 119 (126)
Q Consensus 82 ~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~e 119 (126)
+++.|.+-+..-+-.++++.|++.|+++.++++..+|.
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~ 60 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPS 60 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcC
Confidence 56666554444467788888999999998888765543
No 283
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=40.84 E-value=66 Score=27.40 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=38.7
Q ss_pred HHHHHhhhcC---CCEEEEecCCCchHH----HHHHHHHhcCCCcEEEEccCCchhHHHh
Q 033133 72 EESVKKTVSE---NPVVVYSKTWCSYSS----EVKLLFKRLGVEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 72 ~~~V~~lI~~---~~VvVYSKs~CPYC~----kAK~LL~~~gV~y~vIDID~~~ea~~em 124 (126)
.+.+.+++++ ..|+.+.-.+|-.=. ..|+.|++.|+++-.+|.+++.++.+|+
T Consensus 310 ~~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~id~~~~~~~~~q~ 369 (380)
T TIGR02263 310 GKYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQIAFKYAENSGQMQPI 369 (380)
T ss_pred HHHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEEEecCccchHHHH
Confidence 4556666644 467777777786543 6688899999999999999866666654
No 284
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=40.04 E-value=1.1e+02 Score=20.21 Aligned_cols=40 Identities=25% Similarity=0.175 Sum_probs=27.6
Q ss_pred CCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhHH
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRLS 122 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~~ 122 (126)
+.+|++|..+ +-...++-..|.+.|.. .+..++..-.++.
T Consensus 58 ~~~vv~~c~~-g~rs~~~~~~l~~~G~~-~v~~l~GG~~~w~ 97 (101)
T cd01528 58 DKDIVVLCHH-GGRSMQVAQWLLRQGFE-NVYNLQGGIDAWS 97 (101)
T ss_pred CCeEEEEeCC-CchHHHHHHHHHHcCCc-cEEEecCCHHHHh
Confidence 6789999765 56777777788888875 4456665544443
No 285
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=39.63 E-value=21 Score=29.99 Aligned_cols=24 Identities=13% Similarity=0.422 Sum_probs=17.9
Q ss_pred cCCCEEEEecCCCchHHHHHHHHH
Q 033133 80 SENPVVVYSKTWCSYSSEVKLLFK 103 (126)
Q Consensus 80 ~~~~VvVYSKs~CPYC~kAK~LL~ 103 (126)
+...++.|..+||++|++....++
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~ 185 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWE 185 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHH
Confidence 344688999999999997644443
No 286
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=39.31 E-value=31 Score=25.57 Aligned_cols=15 Identities=13% Similarity=0.496 Sum_probs=13.3
Q ss_pred CCchHHHHHHHHHhc
Q 033133 91 WCSYSSEVKLLFKRL 105 (126)
Q Consensus 91 ~CPYC~kAK~LL~~~ 105 (126)
+||+|...+.+|...
T Consensus 23 ~Cp~c~~iEGlLa~~ 37 (112)
T PF11287_consen 23 YCPHCAAIEGLLASF 37 (112)
T ss_pred ECCchHHHHhHHhhC
Confidence 599999999999865
No 287
>PRK04195 replication factor C large subunit; Provisional
Probab=38.79 E-value=81 Score=27.53 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=45.4
Q ss_pred eeeeecchhhHHHHhhhcc--chHHHHHHhhhc---CCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEc
Q 033133 50 GRRRRYGAVSVQAMASSYG--SRLEESVKKTVS---ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIEL 114 (126)
Q Consensus 50 ~~~~~~~~~~~~~m~s~~g--~~~~~~V~~lI~---~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDI 114 (126)
.|-.+|+|..+..+...-. ....++++...+ .+.+.+|+-++|.=-..|+.+.++.|.++..++.
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 5678899999888763211 123344444333 4679999999999999999999999865544443
No 288
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=38.46 E-value=97 Score=21.63 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=30.6
Q ss_pred HHHHHhhhcCCCEEEEecCCCchHH----HHHHHHHhcCCCcEEEEcc
Q 033133 72 EESVKKTVSENPVVVYSKTWCSYSS----EVKLLFKRLGVEPLVIELD 115 (126)
Q Consensus 72 ~~~V~~lI~~~~VvVYSKs~CPYC~----kAK~LL~~~gV~y~vIDID 115 (126)
.+.++++.+..+|+|+.. .++|++ .+-.+|+++..+..+|++.
T Consensus 77 ~~~l~~l~~~~~I~iW~~-~~~~dq~gl~~~l~~L~~~~~~I~~v~~t 123 (124)
T PF08874_consen 77 LKRLEELPEDDPIVIWYG-DNAYDQLGLRYLLSLLKDKPNRIYVVNVT 123 (124)
T ss_pred HHHHHhCCCCCEEEEEeC-CCHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 455777777788887754 477776 5566778777777788765
No 289
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=37.96 E-value=38 Score=24.75 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCchHHHH-HHHHHhcCCCcEEEEccC
Q 033133 91 WCSYSSEV-KLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 91 ~CPYC~kA-K~LL~~~gV~y~vIDID~ 116 (126)
.|--|..| |+.|.+.||+.+++.|+.
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 39999776 899999999999999876
No 290
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=37.33 E-value=1.1e+02 Score=20.10 Aligned_cols=41 Identities=20% Similarity=0.039 Sum_probs=27.1
Q ss_pred HhhhcCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCch
Q 033133 76 KKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGM 119 (126)
Q Consensus 76 ~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~e 119 (126)
..+-+..+|++|...+ --+..+-+.|.+.|++ +..++..-+
T Consensus 56 ~~~~~~~~ivv~C~~G-~rs~~aa~~L~~~G~~--~~~l~GG~~ 96 (100)
T cd01523 56 DQLPDDQEVTVICAKE-GSSQFVAELLAERGYD--VDYLAGGMK 96 (100)
T ss_pred hhCCCCCeEEEEcCCC-CcHHHHHHHHHHcCce--eEEeCCcHH
Confidence 3334567888886543 4566777889999986 666655433
No 291
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.83 E-value=20 Score=30.90 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=10.5
Q ss_pred EEEecCCCchHHHHH
Q 033133 85 VVYSKTWCSYSSEVK 99 (126)
Q Consensus 85 vVYSKs~CPYC~kAK 99 (126)
+|=-|..||||++--
T Consensus 266 ivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 266 IVGKKQTCPYCKEKV 280 (328)
T ss_pred eecCCCCCchHHHHh
Confidence 344568999998643
No 292
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=36.58 E-value=1.3e+02 Score=20.39 Aligned_cols=43 Identities=26% Similarity=0.213 Sum_probs=29.6
Q ss_pred hhhcCCCEEEEecC-CCchHHHHHHHHHhcCCCcEEEEccCCchhH
Q 033133 77 KTVSENPVVVYSKT-WCSYSSEVKLLFKRLGVEPLVIELDEMGMRL 121 (126)
Q Consensus 77 ~lI~~~~VvVYSKs-~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~ 121 (126)
.+-+..+|++|... .|..-..+-..|.+.|.+ +..++..-+++
T Consensus 60 ~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~--v~~l~GG~~~W 103 (110)
T cd01521 60 KLDKEKLFVVYCDGPGCNGATKAALKLAELGFP--VKEMIGGLDWW 103 (110)
T ss_pred cCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe--EEEecCCHHHH
Confidence 33456789999765 366677777888999985 55666554444
No 293
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=35.81 E-value=47 Score=23.22 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=27.8
Q ss_pred cCCCEEEEec-CCCchHHHHHHHHHhcCCCcEEEEc
Q 033133 80 SENPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIEL 114 (126)
Q Consensus 80 ~~~~VvVYSK-s~CPYC~kAK~LL~~~gV~y~vIDI 114 (126)
+..+|+|.+- +....|.+|.+.|++.|++..++|+
T Consensus 8 ~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 8 EGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEee
Confidence 3456776665 4578899999999999999888887
No 294
>PRK10542 glutathionine S-transferase; Provisional
Probab=35.62 E-value=52 Score=24.16 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhcCCCcEEEEccC
Q 033133 94 YSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 94 YC~kAK~LL~~~gV~y~vIDID~ 116 (126)
.+.++.-+|+.+|++|+.+.+|-
T Consensus 10 ~~~~~~~~L~~~gi~~e~~~v~~ 32 (201)
T PRK10542 10 CSLASHITLRESGLDFTLVSVDL 32 (201)
T ss_pred HHHHHHHHHHHcCCCceEEEeec
Confidence 46677889999999998777664
No 295
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=35.39 E-value=1.2e+02 Score=19.53 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=27.6
Q ss_pred HHHHhhhcCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCc
Q 033133 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG 118 (126)
Q Consensus 73 ~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ 118 (126)
+.+..+-.+.+|++|..+ .-.+..+-..|++.|. .+..++..-
T Consensus 43 ~~~~~~~~~~~vvl~c~~-g~~a~~~a~~L~~~G~--~v~~l~GG~ 85 (90)
T cd01524 43 DRLNELPKDKEIIVYCAV-GLRGYIAARILTQNGF--KVKNLDGGY 85 (90)
T ss_pred HHHHhcCCCCcEEEEcCC-ChhHHHHHHHHHHCCC--CEEEecCCH
Confidence 334444445788898664 3556677778899998 566665443
No 296
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=34.42 E-value=43 Score=25.96 Aligned_cols=41 Identities=5% Similarity=-0.001 Sum_probs=29.7
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEc--cCCchhHHHh
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIEL--DEMGMRLSVL 124 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDI--D~~~ea~~em 124 (126)
|++=|++-=|+++++.+.|+++|++|++.-. -+.|+...++
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~ 45 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEY 45 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHH
Confidence 4555667789999999999999999854433 4555555554
No 297
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=34.18 E-value=40 Score=26.86 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=17.0
Q ss_pred EEEEecCCCchHHHHHHHHHhcC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLG 106 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~g 106 (126)
|.+|+..+|.-|=-|-++|.++.
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~ 24 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELA 24 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHH
T ss_pred eeEecCCCCCCCcHHHHHHHHhh
Confidence 67999999999999998887653
No 298
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=33.75 E-value=46 Score=22.69 Aligned_cols=25 Identities=20% Similarity=0.103 Sum_probs=17.1
Q ss_pred HHHHHhc---CCCcEEEEccCCchhHHH
Q 033133 99 KLLFKRL---GVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 99 K~LL~~~---gV~y~vIDID~~~ea~~e 123 (126)
++++++. ..+.++||+.++|+.+++
T Consensus 23 ~~i~e~~l~~~~~LeVIDv~~~P~lAe~ 50 (72)
T cd02978 23 KRILEELLGGPYELEVIDVLKQPQLAEE 50 (72)
T ss_pred HHHHHHhcCCcEEEEEEEcccCHhHHhh
Confidence 4455544 234589999999987764
No 299
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=31.65 E-value=1.3e+02 Score=23.02 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=24.8
Q ss_pred CCCEEEEecCCCchHHHHHHHHHhc--CCCcEEEEcc
Q 033133 81 ENPVVVYSKTWCSYSSEVKLLFKRL--GVEPLVIELD 115 (126)
Q Consensus 81 ~~~VvVYSKs~CPYC~kAK~LL~~~--gV~y~vIDID 115 (126)
....+|+----||+|....++|.++ +-.+...++-
T Consensus 7 ~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q 43 (137)
T COG3011 7 KPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQ 43 (137)
T ss_pred CCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEecc
Confidence 3455677777899999998888766 3345666653
No 300
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=31.51 E-value=79 Score=20.52 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=26.7
Q ss_pred cCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchh
Q 033133 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMR 120 (126)
Q Consensus 80 ~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea 120 (126)
.+.+|++|..+ +-...++-..|.+.|.+ .+..++..-.+
T Consensus 60 ~~~~ivv~c~~-g~~s~~~~~~l~~~G~~-~v~~l~Gg~~~ 98 (103)
T cd01447 60 EDKPFVFYCAS-GWRSALAGKTLQDMGLK-PVYNIEGGFKD 98 (103)
T ss_pred CCCeEEEEcCC-CCcHHHHHHHHHHcChH-HhEeecCcHHH
Confidence 46689999765 67788888889999875 23455544333
No 301
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=31.48 E-value=1.3e+02 Score=18.58 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=24.7
Q ss_pred hhhcCCCEEEEecCCCchHHHHHHHHHhcCCC
Q 033133 77 KTVSENPVVVYSKTWCSYSSEVKLLFKRLGVE 108 (126)
Q Consensus 77 ~lI~~~~VvVYSKs~CPYC~kAK~LL~~~gV~ 108 (126)
...+..+|++|. ..+..+.++-..|.+.|.+
T Consensus 52 ~~~~~~~iv~~c-~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 52 GLDKDKPVVVYC-RSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCCCCCeEEEEe-CCCcHHHHHHHHHHHcCCC
Confidence 344567898998 6678888989999999986
No 302
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=31.36 E-value=16 Score=32.23 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=22.6
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCc
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEP 109 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y 109 (126)
=.|=|..+||..|++..-++++.|.+.
T Consensus 46 W~VdFYAPWC~HCKkLePiWdeVG~el 72 (468)
T KOG4277|consen 46 WFVDFYAPWCAHCKKLEPIWDEVGHEL 72 (468)
T ss_pred EEEEeechhhhhcccccchhHHhCcch
Confidence 356788999999999999999887654
No 303
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=31.29 E-value=91 Score=20.61 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=24.5
Q ss_pred hcCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 79 VSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 79 I~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
-++.+|++|..++ .-+..+-..|.++|.+ .+++++.
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a~~~L~~~G~~-~v~~l~G 94 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKASAYLKERGFK-NVYQLKG 94 (101)
T ss_pred cCCCEEEEECCCc-hhHHHHHHHHHHhCCc-ceeeech
Confidence 4567899998776 4555666678888864 3455654
No 304
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=30.33 E-value=68 Score=23.63 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=20.1
Q ss_pred cCCCEEEE--ecCCCchHHHH--------HHHHHhcCCC-cEEEEcc
Q 033133 80 SENPVVVY--SKTWCSYSSEV--------KLLFKRLGVE-PLVIELD 115 (126)
Q Consensus 80 ~~~~VvVY--SKs~CPYC~kA--------K~LL~~~gV~-y~vIDID 115 (126)
+..++++| -+.|||.|..- .+-|++.|+. ...+-.|
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 34456544 45679999754 3445556653 4444443
No 305
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=30.20 E-value=21 Score=31.61 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=29.7
Q ss_pred EEEEecCCCchHHHHHHHHHhcCCCcEEEEccC-CchhHHHhhC
Q 033133 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE-MGMRLSVLIR 126 (126)
Q Consensus 84 VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~-~~ea~~emi~ 126 (126)
+.+|+.+. |...++++.|++.|.+..++.-.. -..+.++||+
T Consensus 190 iTmfGvTT-p~V~~~~~~Le~~G~Ev~VFHAtG~GG~aME~Li~ 232 (403)
T PF06792_consen 190 ITMFGVTT-PCVDAIRERLEEEGYEVLVFHATGTGGRAMERLIR 232 (403)
T ss_pred EECCCCcH-HHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHH
Confidence 34777776 888999999999998776665443 3345666653
No 306
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.91 E-value=58 Score=22.26 Aligned_cols=20 Identities=5% Similarity=0.155 Sum_probs=17.2
Q ss_pred CchHHHHHHHHHhcCCCcEE
Q 033133 92 CSYSSEVKLLFKRLGVEPLV 111 (126)
Q Consensus 92 CPYC~kAK~LL~~~gV~y~v 111 (126)
=.||+|+-++|+++|+.|+-
T Consensus 15 vGF~rk~L~I~E~~~is~Eh 34 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEH 34 (76)
T ss_pred hcHHHHHHHHHHHcCCCEee
Confidence 36999999999999998753
No 307
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=29.54 E-value=1.1e+02 Score=26.06 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=36.3
Q ss_pred HHHHHhhhcC---CCEEEEecCCCchHH----HHHHHHHhcCCCcEEEEccCCchhHHH
Q 033133 72 EESVKKTVSE---NPVVVYSKTWCSYSS----EVKLLFKRLGVEPLVIELDEMGMRLSV 123 (126)
Q Consensus 72 ~~~V~~lI~~---~~VvVYSKs~CPYC~----kAK~LL~~~gV~y~vIDID~~~ea~~e 123 (126)
.+.+.+++++ ..|+.++-.+|-.-. ..|+.|++.|+++-.+|.|-.++ ..|
T Consensus 302 ~~~i~~lv~~~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~~~-~gQ 359 (377)
T TIGR03190 302 YDHVLGLAKEYNVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDITNP-IGP 359 (377)
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCCCc-hHH
Confidence 3445554444 467788888887654 56888999999999999987644 434
No 308
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=29.04 E-value=89 Score=28.06 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=38.4
Q ss_pred cchHHHHHHhhhcCCCEEEEecCCCc-----hHHHHHHHHHhc-----CCCcEEEEccCCchh
Q 033133 68 GSRLEESVKKTVSENPVVVYSKTWCS-----YSSEVKLLFKRL-----GVEPLVIELDEMGMR 120 (126)
Q Consensus 68 g~~~~~~V~~lI~~~~VvVYSKs~CP-----YC~kAK~LL~~~-----gV~y~vIDID~~~ea 120 (126)
+.+.++.++++-++-.|.+|....=| +=.+++++|+++ ++.++++|-+.+++.
T Consensus 36 S~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~ 98 (552)
T TIGR03521 36 SPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDE 98 (552)
T ss_pred CHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Confidence 34557778887667777788776544 456788999876 577889998877655
No 309
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.43 E-value=1e+02 Score=22.85 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCCcEEEEccCCchhHHHh
Q 033133 97 EVKLLFKRLGVEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 97 kAK~LL~~~gV~y~vIDID~~~ea~~em 124 (126)
.+-.+|+...+.++.+||....+..+.|
T Consensus 23 evv~~Ld~~ki~fk~~di~~~e~~~~~~ 50 (108)
T KOG4023|consen 23 EVVRFLDANKIGFKEIDITAYEEVRQWM 50 (108)
T ss_pred hhhhhhhcccCCcceeeccchhhhHHHH
Confidence 3446788889999999998777666655
No 310
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=27.79 E-value=70 Score=24.70 Aligned_cols=34 Identities=18% Similarity=0.424 Sum_probs=24.4
Q ss_pred CCCEEEEe-cCCCchHHHH-HHHHHhcCCCc-EEEEc
Q 033133 81 ENPVVVYS-KTWCSYSSEV-KLLFKRLGVEP-LVIEL 114 (126)
Q Consensus 81 ~~~VvVYS-Ks~CPYC~kA-K~LL~~~gV~y-~vIDI 114 (126)
...++||. ++-|.||... +++.++.|++. ++++.
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEec
Confidence 45666665 5679999865 67788999985 45544
No 311
>PRK00758 GMP synthase subunit A; Validated
Probab=27.70 E-value=1.5e+02 Score=22.01 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=27.1
Q ss_pred EecCCCchHHHHHHHHHhcCCCcEEEEccCCchh
Q 033133 87 YSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMR 120 (126)
Q Consensus 87 YSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea 120 (126)
.-.-+|.|+....++|++.|++..+++.+..++.
T Consensus 4 iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~ 37 (184)
T PRK00758 4 VVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEE 37 (184)
T ss_pred EEECCCchHHHHHHHHHHcCCcEEEEECCCCHHH
Confidence 4457899999999999999998888886655443
No 312
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=27.69 E-value=2e+02 Score=19.49 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=27.6
Q ss_pred cCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCch
Q 033133 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGM 119 (126)
Q Consensus 80 ~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~e 119 (126)
...+|++|...++....++-..|...|.+ .+..++..-.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~-~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHE-NVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCC-CEEEecCCHH
Confidence 46689999887777777888889999976 2345554433
No 313
>TIGR00778 ahpD_dom alkylhydroperoxidase AhpD family core domain. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity.
Probab=27.33 E-value=69 Score=18.81 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=14.2
Q ss_pred CCCchHHHH-HHHHHhcCCCc
Q 033133 90 TWCSYSSEV-KLLFKRLGVEP 109 (126)
Q Consensus 90 s~CPYC~kA-K~LL~~~gV~y 109 (126)
.+|.||... .....+.|+..
T Consensus 19 ~~C~yc~~~H~~~a~~~G~~~ 39 (50)
T TIGR00778 19 NGCGYCLDAHTKLARKAGVTA 39 (50)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 469999987 45566677654
No 314
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=26.61 E-value=1.5e+02 Score=23.68 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=43.7
Q ss_pred eeeeeecchhhHHHHhhhccchHHHHHHhhhcCC----CEEEEecCCCchHHHHHHHHHhcCCCcEEEEcc
Q 033133 49 NGRRRRYGAVSVQAMASSYGSRLEESVKKTVSEN----PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (126)
Q Consensus 49 ~~~~~~~~~~~~~~m~s~~g~~~~~~V~~lI~~~----~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID 115 (126)
..|.++|+|..+..+... ....+.+++.++.. .+.+++-+++.=-..++.+.++.+.++.+++..
T Consensus 9 ~~w~~kyrP~~~~~~~~~--~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 9 FMWEQKYRPSTIDECILP--AADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred CcceeccCCCcHHHhcCc--HHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 467799999988887522 23344455544443 444589999999888888888777666555543
No 315
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=26.44 E-value=1.5e+02 Score=24.87 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=26.0
Q ss_pred CCEEEEecC----CCchHHHHHHHHHhcCCCcEEE-EccCCc
Q 033133 82 NPVVVYSKT----WCSYSSEVKLLFKRLGVEPLVI-ELDEMG 118 (126)
Q Consensus 82 ~~VvVYSKs----~CPYC~kAK~LL~~~gV~y~vI-DID~~~ 118 (126)
++++|.+-. ..++..++++.|++.|+++.++ ++..+|
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p 67 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNP 67 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCC
Confidence 456555532 4789999999999999988766 344443
No 316
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=26.34 E-value=84 Score=29.20 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=34.0
Q ss_pred HHHHHhhhcCCC---EE-EEecCCCchHHHHHHHH--------HhcCCCcEEEEccCCch-hHHHhh
Q 033133 72 EESVKKTVSENP---VV-VYSKTWCSYSSEVKLLF--------KRLGVEPLVIELDEMGM-RLSVLI 125 (126)
Q Consensus 72 ~~~V~~lI~~~~---Vv-VYSKs~CPYC~kAK~LL--------~~~gV~y~vIDID~~~e-a~~emi 125 (126)
..++++.+++++ |. =|+.+||--|+.-+++. +-.++..-..|+.++++ ..+.|.
T Consensus 462 ~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk 528 (569)
T COG4232 462 LAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLK 528 (569)
T ss_pred HHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHH
Confidence 336777777766 33 48999999999776553 22344456777765444 444443
No 317
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=26.02 E-value=1.4e+02 Score=21.64 Aligned_cols=42 Identities=17% Similarity=0.335 Sum_probs=25.8
Q ss_pred hcCCCEEEEecCC-CchHHHHHHHHHhc------CCCcEEEEccCCchh
Q 033133 79 VSENPVVVYSKTW-CSYSSEVKLLFKRL------GVEPLVIELDEMGMR 120 (126)
Q Consensus 79 I~~~~VvVYSKs~-CPYC~kAK~LL~~~------gV~y~vIDID~~~ea 120 (126)
-++.+++||=-+. ||=..+|.+-|++. ++++.++||-+..+.
T Consensus 17 S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~v 65 (105)
T PF11009_consen 17 SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPV 65 (105)
T ss_dssp ---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHH
T ss_pred cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchh
Confidence 4467888887766 99999998777543 278888888655443
No 318
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=25.94 E-value=1.5e+02 Score=25.09 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=25.4
Q ss_pred CCEEEEec-C---CCchHHHHHHHHHhcCCCcEEEE-ccCCc
Q 033133 82 NPVVVYSK-T---WCSYSSEVKLLFKRLGVEPLVIE-LDEMG 118 (126)
Q Consensus 82 ~~VvVYSK-s---~CPYC~kAK~LL~~~gV~y~vID-ID~~~ 118 (126)
.+++|.+- . -+++..++++.|++.|+++.+++ +..+|
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p 68 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNP 68 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence 35555543 3 27888999999999999887764 44333
No 319
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.03 E-value=1.3e+02 Score=23.63 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=29.6
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccC
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~ 116 (126)
+..+|+...=|.|+++.-.++..|++++++.+|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~ 35 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDL 35 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeec
Confidence 4679999999999999999999999998885553
No 320
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=24.83 E-value=52 Score=25.21 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=24.4
Q ss_pred ecCCCchHHHHHHHHHhcCCCcEEEEcc--CCchhHHHh
Q 033133 88 SKTWCSYSSEVKLLFKRLGVEPLVIELD--EMGMRLSVL 124 (126)
Q Consensus 88 SKs~CPYC~kAK~LL~~~gV~y~vIDID--~~~ea~~em 124 (126)
|++-=|+++++++.|++.|++|++.-+. +.|+...++
T Consensus 9 s~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~ 47 (150)
T PF00731_consen 9 STSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEF 47 (150)
T ss_dssp SGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHH
Confidence 4455789999999999999998765443 444544433
No 321
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=24.79 E-value=1.2e+02 Score=24.29 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=23.5
Q ss_pred EEecCCCchHHHHHHHHHhcCCC--cEEEEccC
Q 033133 86 VYSKTWCSYSSEVKLLFKRLGVE--PLVIELDE 116 (126)
Q Consensus 86 VYSKs~CPYC~kAK~LL~~~gV~--y~vIDID~ 116 (126)
++-...||.++++++-|++.|+. +.++-=++
T Consensus 150 i~~t~~~pla~~~R~~Lrk~~~~~~~~~v~S~E 182 (231)
T cd00755 150 ISKTSGDPLARKVRKRLRKRGIFFGVPVVYSTE 182 (231)
T ss_pred EeccccCcHHHHHHHHHHHcCCCCCeEEEeCCC
Confidence 66677899999999999999885 34443333
No 322
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=24.63 E-value=2e+02 Score=19.24 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=22.9
Q ss_pred cCCCEEEEecCCCchHHHHHHHHHhcCCC
Q 033133 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVE 108 (126)
Q Consensus 80 ~~~~VvVYSKs~CPYC~kAK~LL~~~gV~ 108 (126)
+..+|++|... +..+.++-..|+..|.+
T Consensus 77 ~~~~iv~yc~~-g~~s~~~~~~l~~~G~~ 104 (118)
T cd01449 77 PDKPVIVYCGS-GVTACVLLLALELLGYK 104 (118)
T ss_pred CCCCEEEECCc-HHHHHHHHHHHHHcCCC
Confidence 56789999766 67888888899999985
No 323
>COG5427 Uncharacterized membrane protein [Function unknown]
Probab=24.47 E-value=1.1e+02 Score=28.36 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=26.4
Q ss_pred HHHHhhhcCCCEEEEecCCCchHHHHHHHHHhcCCCcEEE
Q 033133 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVI 112 (126)
Q Consensus 73 ~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vI 112 (126)
..|++-+++-++ +||.+. |.|..+++++++++|.++
T Consensus 610 ~~V~qR~KDVR~-~YST~~---~~K~~Ei~~KY~V~Yv~~ 645 (684)
T COG5427 610 AAVEQRVKDVRV-VYSTTD---AAKRAEILEKYDVTYVWV 645 (684)
T ss_pred HHHHHHhhhhhe-eeecCc---HHHHHHHHHhcCceEEEE
Confidence 345555555553 788765 689999999999998655
No 324
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=24.23 E-value=22 Score=22.29 Aligned_cols=6 Identities=17% Similarity=0.927 Sum_probs=4.8
Q ss_pred CchHHH
Q 033133 92 CSYSSE 97 (126)
Q Consensus 92 CPYC~k 97 (126)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 999964
No 325
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=23.70 E-value=2.3e+02 Score=21.13 Aligned_cols=77 Identities=18% Similarity=0.134 Sum_probs=50.0
Q ss_pred ceeeEEEeeeeeecchhhHHHHhhhccchHHHHH-HhhhcCCCEEEEecCCCchHH----HHHHHHHhcCCCcEEEEccC
Q 033133 42 SRTSLSVNGRRRRYGAVSVQAMASSYGSRLEESV-KKTVSENPVVVYSKTWCSYSS----EVKLLFKRLGVEPLVIELDE 116 (126)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~m~s~~g~~~~~~V-~~lI~~~~VvVYSKs~CPYC~----kAK~LL~~~gV~y~vIDID~ 116 (126)
..|.+.--+|.+.....-+ ...|.+-...+ +.+....+=++|-.++|.++. +++++-+..++++++++.+
T Consensus 81 ~gt~flT~gW~~~~~~~~~----~~~G~~~~~~~~~~~~~~y~~~~~Idtg~~~~~~~~~~~~~~a~~~~l~~~~~~g~- 155 (166)
T PF07796_consen 81 AGTYFLTPGWLKNWRDRFI----ERYGEDRADAIMRMMFGHYKRVVLIDTGVYDEEDFEEKVREFAEFLGLPIEEIPGD- 155 (166)
T ss_pred CCeEEECcHHHHHhHHHHH----HhcCccchHHHHHHHHhCCCeEEEEecccccchHHHHHHHHHHHHhCCCEEEEeCC-
Confidence 3445555566555555333 34555555554 666777788888889988876 5677778889999888765
Q ss_pred CchhHHHh
Q 033133 117 MGMRLSVL 124 (126)
Q Consensus 117 ~~ea~~em 124 (126)
.+..+.+
T Consensus 156 -l~~l~~l 162 (166)
T PF07796_consen 156 -LDLLEKL 162 (166)
T ss_pred -HHHHHHH
Confidence 3444444
No 326
>PTZ00323 NAD+ synthase; Provisional
Probab=23.64 E-value=69 Score=26.86 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCCcEEEEccCCchhH
Q 033133 96 SEVKLLFKRLGVEPLVIELDEMGMRL 121 (126)
Q Consensus 96 ~kAK~LL~~~gV~y~vIDID~~~ea~ 121 (126)
..|+++++..|+++.++|++..-++.
T Consensus 95 ~~A~~la~~lGi~~~~idi~~l~~~~ 120 (294)
T PTZ00323 95 NRGRENIQACGATEVTVDQTEIHTQL 120 (294)
T ss_pred HHHHHHHHHhCCcEEEEECcHHHHHH
Confidence 68999999999999999998655443
No 327
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.26 E-value=2.4e+02 Score=18.98 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=35.5
Q ss_pred HHHHHhhhcCCCEEEEecCCCch--HHHHHHHHHhcCCCcEEEE
Q 033133 72 EESVKKTVSENPVVVYSKTWCSY--SSEVKLLFKRLGVEPLVIE 113 (126)
Q Consensus 72 ~~~V~~lI~~~~VvVYSKs~CPY--C~kAK~LL~~~gV~y~vID 113 (126)
...+.+.+...++||+-..++.. +..+|+.-++.++++....
T Consensus 39 ~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 39 ASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred hhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 44689999999999999999876 4788999999999886664
No 328
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=23.12 E-value=2.5e+02 Score=22.06 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=38.9
Q ss_pred eeeeecchhhHHHHhhhccchHHHHHHhhhcCC---CEEEEecCCCchHHHHHHHHHhc
Q 033133 50 GRRRRYGAVSVQAMASSYGSRLEESVKKTVSEN---PVVVYSKTWCSYSSEVKLLFKRL 105 (126)
Q Consensus 50 ~~~~~~~~~~~~~m~s~~g~~~~~~V~~lI~~~---~VvVYSKs~CPYC~kAK~LL~~~ 105 (126)
.|..+|+|..+..+... ....+.+.+.++.. .+.+|+.++|.=-..++.+.++.
T Consensus 6 ~w~~kyrP~~~~~~~g~--~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQ--EEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred ccchhhCCCcHHHhcCc--HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 47788999888776522 24556666666553 48899999999888888777664
No 329
>cd08486 PBP2_CbnR The C-terminal substrate binding domain of LysR-type transcriptional regulator, CbnR, involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of LysR-type regulator CbnR which is involved in the regulation of chlorocatechol breakdown. The chlorocatechol-degradative pathway is often found in bacteria that can use chlorinated aromatic compounds as carbon and energy sources. CbnR is found in the 3-chlorobenzoate degradative bacterium Ralstonia eutropha NH9 and forms a tetramer. CbnR activates the expression of the cbnABCD genes, which are responsible for the degradation of chlorocatechol converted from 3-chlorobenzoate and are transcribed divergently from cbnR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccha
Probab=22.66 E-value=2.8e+02 Score=19.37 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=27.5
Q ss_pred hcCCCEEEEecCC-CchHHHHHHHHHhcCCCcE-EEEcc
Q 033133 79 VSENPVVVYSKTW-CSYSSEVKLLFKRLGVEPL-VIELD 115 (126)
Q Consensus 79 I~~~~VvVYSKs~-CPYC~kAK~LL~~~gV~y~-vIDID 115 (126)
+.+.+++++.... |++-....+++.+.|+.+. .++.+
T Consensus 96 L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (198)
T cd08486 96 LRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVE 134 (198)
T ss_pred HcCCCeEeecCCcCchHHHHHHHHHHHcCCCcceEEEec
Confidence 5566888888765 5688888999999998864 34444
No 330
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=22.41 E-value=61 Score=21.75 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=27.9
Q ss_pred HHHHHhhhcCCCEEEEecCCCchHHHHHHHHHhcCCCc
Q 033133 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEP 109 (126)
Q Consensus 72 ~~~V~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y 109 (126)
.+.+++.... ++..|.-++..+-..+.+++.+.|.+|
T Consensus 86 ~~~l~~~~g~-~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 86 REILEEITGR-PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp HHHHHHHHSS-EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred HHHHHHHhCC-CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 5566665555 777899999998999999999999866
No 331
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=22.15 E-value=2.5e+02 Score=19.34 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=28.0
Q ss_pred cCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchhH
Q 033133 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMRL 121 (126)
Q Consensus 80 ~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea~ 121 (126)
.+.+|++|..+ +--+.++-+.|.+.|++-.+..++..-+++
T Consensus 71 ~~~~ivv~C~~-G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W 111 (122)
T cd01526 71 KDSPIYVVCRR-GNDSQTAVRKLKELGLERFVRDIIGGLKAW 111 (122)
T ss_pred CCCcEEEECCC-CCcHHHHHHHHHHcCCccceeeecchHHHH
Confidence 45688888754 467778888899999944455665544443
No 332
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.06 E-value=1e+02 Score=18.67 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=16.2
Q ss_pred CCCchHH-HHHHHHHhc-CCCcEEEEc
Q 033133 90 TWCSYSS-EVKLLFKRL-GVEPLVIEL 114 (126)
Q Consensus 90 s~CPYC~-kAK~LL~~~-gV~y~vIDI 114 (126)
=.|+-|. ++++.|.+. |+.-..+|+
T Consensus 7 m~C~~C~~~v~~~l~~~~GV~~v~vd~ 33 (62)
T PF00403_consen 7 MTCEGCAKKVEKALSKLPGVKSVKVDL 33 (62)
T ss_dssp TTSHHHHHHHHHHHHTSTTEEEEEEET
T ss_pred cccHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 4699996 557777765 665444444
No 333
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=21.83 E-value=1.7e+02 Score=25.08 Aligned_cols=37 Identities=5% Similarity=0.047 Sum_probs=26.6
Q ss_pred CCEEEEecCC---CchHHHHHHHHHhcCCCcEEEE-ccCCc
Q 033133 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMG 118 (126)
Q Consensus 82 ~~VvVYSKs~---CPYC~kAK~LL~~~gV~y~vID-ID~~~ 118 (126)
++++|.+... -++..++++.|++.|+++.++| +..+|
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P 90 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEP 90 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCc
Confidence 4666666544 5778899999999999887774 44444
No 334
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=21.44 E-value=1.8e+02 Score=24.38 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=19.2
Q ss_pred CchHHHHHHHHHhcCCCcEEEE-ccCCc
Q 033133 92 CSYSSEVKLLFKRLGVEPLVIE-LDEMG 118 (126)
Q Consensus 92 CPYC~kAK~LL~~~gV~y~vID-ID~~~ 118 (126)
.++-.++++.|++.|+++.+++ +..+|
T Consensus 38 ~g~~~~v~~~L~~~g~~~~~~~~v~~~p 65 (375)
T cd08179 38 FGFLDKVEAYLKEAGIEVEVFEGVEPDP 65 (375)
T ss_pred CChHHHHHHHHHHcCCeEEEeCCCCCCc
Confidence 6788888888888888776664 44343
No 335
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=21.42 E-value=2.1e+02 Score=24.20 Aligned_cols=37 Identities=8% Similarity=0.204 Sum_probs=26.1
Q ss_pred CCEEEEecCC---CchHHHHHHHHHhcCCCcEEEE-ccCCc
Q 033133 82 NPVVVYSKTW---CSYSSEVKLLFKRLGVEPLVIE-LDEMG 118 (126)
Q Consensus 82 ~~VvVYSKs~---CPYC~kAK~LL~~~gV~y~vID-ID~~~ 118 (126)
.++.|.+-.. .++..++++.|++.|+++.++| +..+|
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p 71 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNP 71 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCc
Confidence 4555554433 5688899999999999887774 55554
No 336
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=21.39 E-value=57 Score=27.34 Aligned_cols=44 Identities=14% Similarity=0.353 Sum_probs=31.6
Q ss_pred HhhhcCCCEEEEecCCCchHHHHHHHHHhc-------CCCcEEEEccCCch
Q 033133 76 KKTVSENPVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDEMGM 119 (126)
Q Consensus 76 ~~lI~~~~VvVYSKs~CPYC~kAK~LL~~~-------gV~y~vIDID~~~e 119 (126)
..+....=.+.|..+|||-|.--+..|.+. +|..-.+|+..+|.
T Consensus 35 ~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg 85 (248)
T KOG0913|consen 35 KELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG 85 (248)
T ss_pred hhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc
Confidence 344445556689999999999888888653 55667788776664
No 337
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.31 E-value=1.8e+02 Score=24.07 Aligned_cols=45 Identities=4% Similarity=0.118 Sum_probs=28.2
Q ss_pred HHHHhhhcCCCEEEEecCCC--chHHHHHHHHHhcCCCcEEEEccCCch
Q 033133 73 ESVKKTVSENPVVVYSKTWC--SYSSEVKLLFKRLGVEPLVIELDEMGM 119 (126)
Q Consensus 73 ~~V~~lI~~~~VvVYSKs~C--PYC~kAK~LL~~~gV~y~vIDID~~~e 119 (126)
+.+++. . .+++|.+-... ++..++++.|++.|+++.+.++..+|.
T Consensus 16 ~~~~~~-~-~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~ 62 (351)
T cd08170 16 EYLARL-G-KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECT 62 (351)
T ss_pred HHHHHh-C-CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCC
Confidence 344444 2 45554443222 788888999999999876556665553
No 338
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=21.30 E-value=1.2e+02 Score=26.98 Aligned_cols=53 Identities=30% Similarity=0.497 Sum_probs=39.8
Q ss_pred HHHHHhhhcC---CCEEEEecCCCc-hH---HHHHHHHHhcCCCcEEEEccCCchhHHHh
Q 033133 72 EESVKKTVSE---NPVVVYSKTWCS-YS---SEVKLLFKRLGVEPLVIELDEMGMRLSVL 124 (126)
Q Consensus 72 ~~~V~~lI~~---~~VvVYSKs~CP-YC---~kAK~LL~~~gV~y~vIDID~~~ea~~em 124 (126)
.+++.+++++ ..|++|+-..|- |. -..++.|++.+|++.-++.|......+|+
T Consensus 308 ~k~i~~mvkE~~vDGvv~~~l~fC~p~~~e~~~lk~~~kE~~iPvi~~e~D~~~~d~eQl 367 (379)
T COG1775 308 VKYISRMVKEYNVDGVVLYTLRFCKPYSVEYPELKRRLKEEGIPVIAIEGDYSNFDVEQL 367 (379)
T ss_pred HHHHHHHHHHcCCCeEeehhhhccCccccccHHHHHHHHhcCCcEEEeccccccccHHHH
Confidence 5678888888 467889888874 43 26688899999999888888765544443
No 339
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=20.92 E-value=2.3e+02 Score=18.40 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=25.0
Q ss_pred cCCCEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCchh
Q 033133 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGMR 120 (126)
Q Consensus 80 ~~~~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~ea 120 (126)
++.+|++|..++---.. +-..|...|.+ +..++..-++
T Consensus 55 ~~~~iv~~c~~G~rs~~-aa~~L~~~G~~--v~~l~GG~~~ 92 (95)
T cd01534 55 RGARIVLADDDGVRADM-TASWLAQMGWE--VYVLEGGLAA 92 (95)
T ss_pred CCCeEEEECCCCChHHH-HHHHHHHcCCE--EEEecCcHHH
Confidence 35689999888765444 44456889986 5666654433
No 340
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=20.71 E-value=3.8e+02 Score=21.92 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=32.3
Q ss_pred EEEeeeeee-cchhhHHHHhhhccchHHHHHHhhhcCCCEE-EEecCCCchHHHHHHHHHhcCCCcEEEE
Q 033133 46 LSVNGRRRR-YGAVSVQAMASSYGSRLEESVKKTVSENPVV-VYSKTWCSYSSEVKLLFKRLGVEPLVIE 113 (126)
Q Consensus 46 ~~~~~~~~~-~~~~~~~~m~s~~g~~~~~~V~~lI~~~~Vv-VYSKs~CPYC~kAK~LL~~~gV~y~vID 113 (126)
+.+.+.+|. -....+.+.. .+.+.+++.....+|- |+..+. .-.+|+.+|++.|++|..+|
T Consensus 149 ~VVIElKR~~a~~~aV~QL~-----rY~~~l~~~~~~~~VRGilvA~~--i~~~a~~ll~~~glef~~ld 211 (228)
T PF01939_consen 149 LVVIELKRRRADRDAVEQLL-----RYVELLKRDPGLEPVRGILVAPS--ITPQARELLEDRGLEFVELD 211 (228)
T ss_dssp EEEEEE-SS-B-HHHHHHHH-----HHHHHHHHHH--S-EEEEEEES---B-HHHHHHHHHHT-EEEE--
T ss_pred EEEEEEEeccCCHHHHHHHH-----HHHHHHhhccCCCceeEEEECCC--CCHHHHHHHHHcCCEEEEec
Confidence 556677665 3344555554 2355555444334443 555544 56789999999999987777
No 341
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=20.71 E-value=2.2e+02 Score=19.62 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=30.1
Q ss_pred CEEEEecCCCchHHHHHHHHHhcCCCcEEEEccCCch
Q 033133 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGM 119 (126)
Q Consensus 83 ~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDID~~~e 119 (126)
+|++++.++|.=..-++.+.+..+.++..+.+..+-+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~ 37 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTT 37 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTST
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccc
Confidence 4789999999999999999999888888888766544
No 342
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=20.46 E-value=2.7e+02 Score=22.08 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=29.4
Q ss_pred HhhhccchHHHHHHhhhcCC-----CEEEEecCCCchHHHHHHHHHhcCCCcEEEEc
Q 033133 63 MASSYGSRLEESVKKTVSEN-----PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIEL 114 (126)
Q Consensus 63 m~s~~g~~~~~~V~~lI~~~-----~VvVYSKs~CPYC~kAK~LL~~~gV~y~vIDI 114 (126)
++|+.|+..+..++..-+.. .++|..++.|+- ++..++.|+++..++-
T Consensus 5 l~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~----~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 5 FVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGG----AEYARENGIPVLVYPK 57 (207)
T ss_pred EEeCCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChH----HHHHHHhCCCEEEecc
Confidence 45788888888777643332 223444455654 4555677999876544
No 343
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=20.28 E-value=68 Score=29.28 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=34.2
Q ss_pred HhhhcCCCEEE-----EecCCCchHHHHHHHHHhcCCCcEEEEc-cCCchhHHH
Q 033133 76 KKTVSENPVVV-----YSKTWCSYSSEVKLLFKRLGVEPLVIEL-DEMGMRLSV 123 (126)
Q Consensus 76 ~~lI~~~~VvV-----YSKs~CPYC~kAK~LL~~~gV~y~vIDI-D~~~ea~~e 123 (126)
..+...+.||| -+.++|-||+.+++.|+..|.+...+++ .--||.++.
T Consensus 211 aAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~itclpd~a~~ 264 (583)
T KOG2454|consen 211 AALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVITCLPDTAEA 264 (583)
T ss_pred HHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhheeecCcchHhH
Confidence 34455666664 3567899999999999999998877765 334444443
No 344
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=20.24 E-value=1.9e+02 Score=24.39 Aligned_cols=38 Identities=5% Similarity=0.151 Sum_probs=24.9
Q ss_pred CCEEEEecCCC---chHHHHHHHHHhcCCCcEEEE-ccCCch
Q 033133 82 NPVVVYSKTWC---SYSSEVKLLFKRLGVEPLVIE-LDEMGM 119 (126)
Q Consensus 82 ~~VvVYSKs~C---PYC~kAK~LL~~~gV~y~vID-ID~~~e 119 (126)
++++|.+.... ++-.++++.|++.|+++.+++ +..+|.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~ 70 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPT 70 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCC
Confidence 45555554443 677888999998888876664 443443
No 345
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=20.15 E-value=3.3e+02 Score=20.02 Aligned_cols=54 Identities=7% Similarity=0.044 Sum_probs=34.7
Q ss_pred hHHHHHHhhhcCCC-EEEEec---CC-CchHHHHHHHHHhcCCCc-EEEEccCCchhHHH
Q 033133 70 RLEESVKKTVSENP-VVVYSK---TW-CSYSSEVKLLFKRLGVEP-LVIELDEMGMRLSV 123 (126)
Q Consensus 70 ~~~~~V~~lI~~~~-VvVYSK---s~-CPYC~kAK~LL~~~gV~y-~vIDID~~~ea~~e 123 (126)
.+.++++..-..+. +.|++. .| +-||..++.+=++++++. ..+|++..++..++
T Consensus 61 ~v~~Fl~~~~n~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~vp~l~k~El~gt~~Dv~~ 120 (134)
T PRK03600 61 QVIRFLNDEHNRKLLRGVIASGNRNFGDAFALAGDVISAKCQVPLLYRFELSGTNEDVEN 120 (134)
T ss_pred HHHHHHhccccCCcEEEEEEecCchHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHH
Confidence 44677766444333 223332 33 669999999999999875 67787766555443
Done!