Your job contains 1 sequence.
>033134
MLEDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGEL
GDVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQK
IVSDDE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033134
(126 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 450 4.3e-42 1
TAIR|locus:2089999 - symbol:AT3G13210 species:3702 "Arabi... 402 6.2e-37 1
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 391 1.2e-35 1
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 247 5.8e-20 1
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 247 6.6e-20 1
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 247 6.8e-20 1
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 245 8.6e-20 1
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 245 8.6e-20 1
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 246 9.5e-20 1
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 246 9.7e-20 1
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 233 1.8e-18 1
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 231 3.2e-18 1
WB|WBGene00019762 - symbol:M03F8.3 species:6239 "Caenorha... 226 1.1e-17 1
FB|FBgn0000377 - symbol:crn "crooked neck" species:7227 "... 207 1.1e-15 1
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-... 187 1.5e-15 2
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer... 192 4.1e-14 1
POMBASE|SPBC31F10.11c - symbol:cwf4 "complexed with Cdc5 ... 181 6.3e-13 1
GENEDB_PFALCIPARUM|PFD0180c - symbol:PFD0180c "CGI-201 pr... 174 4.4e-12 1
UNIPROTKB|Q8I1Z2 - symbol:PFD0180c "CGI-201 protein, shor... 174 4.4e-12 1
CGD|CAL0004743 - symbol:orf19.332 species:5476 "Candida a... 138 3.0e-08 1
SGD|S000004107 - symbol:CLF1 "Member of the NineTeen Comp... 134 7.1e-08 1
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 450 (163.5 bits), Expect = 4.3e-42, P = 4.3e-42
Identities = 84/124 (67%), Positives = 103/124 (83%)
Query: 3 EDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGD 62
++D +E + E KK CI+RAR +F++A YY+ S PELKEERA LLE+WLNMESSFG LGD
Sbjct: 582 DEDQEEDVIEHKKDCIKRARAIFDRANTYYKDSTPELKEERATLLEDWLNMESSFGNLGD 641
Query: 63 VSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKIV 122
VS+VQ+KLPKKLKKR+ +DG S YEEYIDYL+PEESQTTNLKILEAAYKWKKQK+
Sbjct: 642 VSIVQSKLPKKLKKRKAITREDG-STEYEEYIDYLYPEESQTTNLKILEAAYKWKKQKVA 700
Query: 123 SDDE 126
+ ++
Sbjct: 701 ASED 704
>TAIR|locus:2089999 [details] [associations]
symbol:AT3G13210 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002686 GO:GO:0006397 Gene3D:1.25.40.10
IPI:IPI00519685 RefSeq:NP_187927.1 UniGene:At.53288
ProteinModelPortal:F4JC74 SMR:F4JC74 EnsemblPlants:AT3G13210.1
GeneID:820511 KEGG:ath:AT3G13210 OMA:NEARNVW Uniprot:F4JC74
Length = 657
Score = 402 (146.6 bits), Expect = 6.2e-37, P = 6.2e-37
Identities = 76/119 (63%), Positives = 98/119 (82%)
Query: 3 EDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGD 62
ED+ +E E+KK I+RAR +F++A Y + S PELKEERAMLLE+WLNME+ FG+LGD
Sbjct: 534 EDEEEEDAIERKKDGIKRAREIFDRANTYNKDSTPELKEERAMLLEDWLNMETGFGKLGD 593
Query: 63 VSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKI 121
V +VQ+KLPKK+KKR+ + +DG + YEEY DYLFPEES+TT+LKILEAA+KWKKQK+
Sbjct: 594 VRVVQSKLPKKVKKRKLSSREDGCTE-YEEYTDYLFPEESETTSLKILEAAHKWKKQKV 651
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 391 (142.7 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 76/115 (66%), Positives = 91/115 (79%)
Query: 6 FQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSL 65
F+ E K+ I+ AR +F++A YY+ + PEL+EERA LLE+WLNME+ FGELGDVS+
Sbjct: 555 FEASASEHKEDGIKSARVIFDRANTYYKDTTPELEEERATLLEDWLNMETGFGELGDVSV 614
Query: 66 VQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQK 120
VQ+KLPKKLKKR+ T +DG S YEEY DYLFPEES TTNLKILEAAYKWKK K
Sbjct: 615 VQSKLPKKLKKRKMTSREDG-STEYEEYFDYLFPEESGTTNLKILEAAYKWKKLK 668
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 247 (92.0 bits), Expect = 5.8e-20, P = 5.8e-20
Identities = 51/115 (44%), Positives = 72/115 (62%)
Query: 7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
Q L +K+ + + R+++E+A R E KEER MLLE W + E FG + D V
Sbjct: 597 QFELSSRKEGSLAKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEDEFGTVSDKERV 654
Query: 67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQK 120
+P+K+KKRR+ Q+DDG AG+EEY DY+FPE++ NLK+L A WKKQ+
Sbjct: 655 DKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 709
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 247 (92.0 bits), Expect = 6.6e-20, P = 6.6e-20
Identities = 52/115 (45%), Positives = 70/115 (60%)
Query: 7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
Q L K+ + + R+++E+A R E KEER MLLE W N E FG D V
Sbjct: 644 QFELSSGKEGSLAKCRQIYEEANKTMRNC--EEKEERLMLLESWRNFEDEFGTASDKERV 701
Query: 67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQK 120
+P+K+KKRR+ Q+DDG AG+EEY DY+FPE++ NLK+L A WKKQ+
Sbjct: 702 DKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 756
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 247 (92.0 bits), Expect = 6.8e-20, P = 6.8e-20
Identities = 51/115 (44%), Positives = 72/115 (62%)
Query: 7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
Q L +K+ + + R+++E+A R E KEER MLLE W + E FG + D V
Sbjct: 666 QFELSSRKEGSLAKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEDEFGTVSDKERV 723
Query: 67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQK 120
+P+K+KKRR+ Q+DDG AG+EEY DY+FPE++ NLK+L A WKKQ+
Sbjct: 724 DKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 778
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 245 (91.3 bits), Expect = 8.6e-20, P = 8.6e-20
Identities = 51/115 (44%), Positives = 71/115 (61%)
Query: 7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
Q L K+ + + R+++E+A R E KEER MLLE W + E FG + D V
Sbjct: 556 QFELSSGKEGSVAKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEDEFGTVSDKERV 613
Query: 67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQK 120
+P+K+KKRR+ Q+DDG AG+EEY DY+FPE++ NLK+L A WKKQ+
Sbjct: 614 DKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 668
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 245 (91.3 bits), Expect = 8.6e-20, P = 8.6e-20
Identities = 51/115 (44%), Positives = 71/115 (61%)
Query: 7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
Q L K+ + + R+++E+A R E KEER MLLE W + E FG + D V
Sbjct: 556 QFELSSGKEGSVAKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEDEFGTVSDKERV 613
Query: 67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQK 120
+P+K+KKRR+ Q+DDG AG+EEY DY+FPE++ NLK+L A WKKQ+
Sbjct: 614 DKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 668
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 246 (91.7 bits), Expect = 9.5e-20, P = 9.5e-20
Identities = 52/120 (43%), Positives = 72/120 (60%)
Query: 7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
Q L K+ + + R+++E+A R E KEER MLLE W + E FG D V
Sbjct: 705 QFELSSGKEGSLTKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEEEFGTASDKERV 762
Query: 67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQKIVSDD 125
+P+K+KKRR+ Q+DDG AG+EEY DY+FPE++ NLK+L A WKKQ+ +D
Sbjct: 763 DKLMPEKVKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPNLKLLAMAKLWKKQQQEKED 822
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 246 (91.7 bits), Expect = 9.7e-20, P = 9.7e-20
Identities = 52/120 (43%), Positives = 72/120 (60%)
Query: 7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
Q L K+ + + R+++E+A R E KEER MLLE W + E FG D V
Sbjct: 717 QFELSSGKEGSLTKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEEEFGTASDKERV 774
Query: 67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQKIVSDD 125
+P+K+KKRR+ Q+DDG AG+EEY DY+FPE++ NLK+L A WKKQ+ +D
Sbjct: 775 DKLMPEKVKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPNLKLLAMAKLWKKQQQEKED 834
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 233 (87.1 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 48/115 (41%), Positives = 70/115 (60%)
Query: 7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLV 66
Q L K++ + + R+++E+A R E KEER MLLE W E FG +
Sbjct: 573 QFELSAGKEESLSKCRQIYEEANKAMRNC--EEKEERVMLLESWKTFEEEFGTDSTKERI 630
Query: 67 QAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQK 120
+ +P+K+KKRR+ Q++DG AG+EEY DY+FPE++ NLK+L A WKKQ+
Sbjct: 631 EKLMPEKIKKRRKLQAEDGSDAGWEEYYDYIFPEDTANQPNLKLLAMAKLWKKQQ 685
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 231 (86.4 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 49/110 (44%), Positives = 70/110 (63%)
Query: 18 IQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKR 77
+QR R+V+E+A N + E KEER MLLE W + E FG V+ LP+K+KKR
Sbjct: 567 VQRCRQVYEEA-NKGMQNCEE-KEERLMLLESWRDYEEEFGSFTHKERVRKLLPEKVKKR 624
Query: 78 RQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQKIVSDDE 126
R+ ++DG AG+EEY DY+FPE++ NLK+L A WKKQ+ +++
Sbjct: 625 RKITAEDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKMWKKQQQQEEED 674
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 226 (84.6 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 46/111 (41%), Positives = 72/111 (64%)
Query: 11 YEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKL 70
+EQ + AR+ FE+A N +A KEER MLLE W E+ G+ + V+ +
Sbjct: 567 FEQTIGNFEGARKAFERA-NQSLENAE--KEERLMLLEAWKECETKSGDQEALKRVETMM 623
Query: 71 PKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQK 120
P+++KKRRQ Q++DG+ AG+EEY DY+FP++ + K+LEAA +WK+++
Sbjct: 624 PRRVKKRRQIQTEDGVDAGWEEYFDYIFPQDQAAKGSFKLLEAAARWKRER 674
>FB|FBgn0000377 [details] [associations]
symbol:crn "crooked neck" species:7227 "Drosophila
melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
evidence=IMP] [GO:0007417 "central nervous system development"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
"peripheral nervous system development" evidence=NAS] [GO:0048663
"neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
[GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
MINT:MINT-282072 STRING:P17886 PaxDb:P17886
EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
Uniprot:P17886
Length = 702
Score = 207 (77.9 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 42/104 (40%), Positives = 63/104 (60%)
Query: 18 IQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKR 77
+Q ARR++E+A R KE R +LLE W + E + ++ V K+P+++KKR
Sbjct: 569 VQLARRIYERANEMLRQLGD--KESRVLLLEAWRDFERDASDSQEMQKVMDKMPRRIKKR 626
Query: 78 RQTQSDDGLSAGYEEYIDYLFPEESQTT-NLKILEAAYKWKKQK 120
++ SD+G+ G+EE DY+FPE+ NLK+L AA WK QK
Sbjct: 627 QKIVSDNGVEEGWEEVFDYIFPEDEMARPNLKLLAAAKMWKTQK 670
>DICTYBASE|DDB_G0278819 [details] [associations]
symbol:DDB_G0278819 "HAT repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
Uniprot:Q54XP4
Length = 705
Score = 187 (70.9 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 43/101 (42%), Positives = 64/101 (63%)
Query: 22 RRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQTQ 81
R +F +A +++ + KEER +LLE W E +FG ++ V K+P+++ KRR
Sbjct: 595 REIFIEA---HKSLSNSDKEERLLLLESWKEFEQTFGNQETLNQVLKKIPQRVIKRRS-- 649
Query: 82 SDDGLSAGYEEYIDYLFPEESQTT--NLKILEAAYKWKKQK 120
DG + G EEY DY+FPEE ++T +LK+LEAA +WKK K
Sbjct: 650 --DG-NGGIEEYFDYIFPEEEKSTQTSLKLLEAAQRWKKLK 687
Score = 43 (20.2 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 11 YEQKKQCIQRARRVFEKAINY 31
+E++ I+ AR +F++AI +
Sbjct: 218 FEERLGNIENARTIFQRAIEF 238
Score = 40 (19.1 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 11 YEQKKQCIQRARRVFEKAIN 30
+E+ ++ + RAR VFE+ ++
Sbjct: 84 WEESQKDLTRARSVFERFLD 103
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 192 (72.6 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 43/119 (36%), Positives = 70/119 (58%)
Query: 3 EDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGD 62
E++ +E + +RAR VFE+A ++ ELKEER LL W E + G D
Sbjct: 556 EEEEEEEERPISDEAKRRARAVFERAHRVFKEK--ELKEERVELLNAWRAFEHTHGSPED 613
Query: 63 VSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTT-NL-KILEAAYKWKKQ 119
+ ++ ++P+++KKRR+ D YEEY+DY+FP + Q+ NL K+L A++WK++
Sbjct: 614 IDKIEKQMPRRVKKRRKLDDDR-----YEEYMDYVFPADDQSAANLSKLLRMAHQWKQE 667
>POMBASE|SPBC31F10.11c [details] [associations]
symbol:cwf4 "complexed with Cdc5 protein Cwf4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 PomBase:SPBC31F10.11c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007049
Gene3D:1.25.40.10 GO:GO:0045292 eggNOG:NOG327505 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 EMBL:AF254353
PIR:T40214 RefSeq:NP_596573.1 ProteinModelPortal:P87312
IntAct:P87312 STRING:P87312 EnsemblFungi:SPBC31F10.11c.1
GeneID:2540328 KEGG:spo:SPBC31F10.11c NextBio:20801457
Uniprot:P87312
Length = 674
Score = 181 (68.8 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 48/123 (39%), Positives = 70/123 (56%)
Query: 2 LEDDFQEHLYEQ--KKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGE 59
LEDD +E E+ + RAR VFE A+ + R LKEER +LLE W E+ G
Sbjct: 551 LEDDDEEPPNEEVASPTAVVRARNVFENALAHLRQQG--LKEERVVLLEAWKQFEAMHGT 608
Query: 60 LGDVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEES--QTTNL-KILEAAYKW 116
V + +P+ +KKRR+ + DG +EEY+DYLFP+ + Q + K+LE + KW
Sbjct: 609 EDTRKHVSSLMPQVVKKRRRLE--DG---SFEEYLDYLFPDTATDQGDKMRKMLELSRKW 663
Query: 117 KKQ 119
K++
Sbjct: 664 KEE 666
>GENEDB_PFALCIPARUM|PFD0180c [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386 GO:GO:0003723
GO:GO:0005622 Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245
KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 174 (66.3 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 37/103 (35%), Positives = 64/103 (62%)
Query: 18 IQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKR 77
I+ R++ E+ I + + + EL ER +LL ++E +G+ + +LPKK+KKR
Sbjct: 562 IEMCRKILEEGIEFCKKN--ELINERCILLNFLCDIEKDYGDKEIIDKTLKRLPKKVKKR 619
Query: 78 RQTQSDDGLSAGYEEYIDYLFPEE-SQTTNLKILEAAYKWKKQ 119
+ +++D EEYI Y+FP++ +Q+ N+KILE A +WKK+
Sbjct: 620 KIIKNNDNDDEIIEEYITYVFPDDGNQSQNMKILEKALEWKKK 662
>UNIPROTKB|Q8I1Z2 [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form" species:36329
"Plasmodium falciparum 3D7" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 GO:GO:0003723 GO:GO:0005622
Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 174 (66.3 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 37/103 (35%), Positives = 64/103 (62%)
Query: 18 IQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKR 77
I+ R++ E+ I + + + EL ER +LL ++E +G+ + +LPKK+KKR
Sbjct: 562 IEMCRKILEEGIEFCKKN--ELINERCILLNFLCDIEKDYGDKEIIDKTLKRLPKKVKKR 619
Query: 78 RQTQSDDGLSAGYEEYIDYLFPEE-SQTTNLKILEAAYKWKKQ 119
+ +++D EEYI Y+FP++ +Q+ N+KILE A +WKK+
Sbjct: 620 KIIKNNDNDDEIIEEYITYVFPDDGNQSQNMKILEKALEWKKK 662
>CGD|CAL0004743 [details] [associations]
symbol:orf19.332 species:5476 "Candida albicans" [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0071006 "U2-type
catalytic step 1 spliceosome" evidence=IEA] [GO:0071008 "U2-type
post-mRNA release spliceosomal complex" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0000974 "Prp19 complex" evidence=IEA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF05843 SMART:SM00386 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 EMBL:AACQ01000027
EMBL:AACQ01000026 RefSeq:XP_720027.1 RefSeq:XP_720159.1
ProteinModelPortal:Q5AED6 STRING:Q5AED6 GeneID:3638214
GeneID:3638364 KEGG:cal:CaO19.332 KEGG:cal:CaO19.7964
eggNOG:NOG327505 KO:K12869 Uniprot:Q5AED6
Length = 758
Score = 138 (53.6 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 39/123 (31%), Positives = 64/123 (52%)
Query: 2 LEDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELG 61
L+ D +E + I+ R +FE+A+ Y++ + KE R +++E W + E G
Sbjct: 644 LQGDNEEFEATVDESQIESTRNIFEEAMTYFKDK--DDKESRLVIIEAWRDFEEVNGSDE 701
Query: 62 DVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTNL-----KILEAAYKW 116
+S V +LP ++KRR S + EEYIDY+FP++ ++ L K L A KW
Sbjct: 702 SLSKVTKRLPVIVRKRRTVGSIE------EEYIDYIFPDD-ESKKLPGKMSKFLANAKKW 754
Query: 117 KKQ 119
+Q
Sbjct: 755 AQQ 757
>SGD|S000004107 [details] [associations]
symbol:CLF1 "Member of the NineTeen Complex (NTC)"
species:4932 "Saccharomyces cerevisiae" [GO:0000785 "chromatin"
evidence=IDA] [GO:0000384 "first spliceosomal transesterification
activity" evidence=IC] [GO:0071007 "U2-type catalytic step 2
spliceosome" evidence=IDA] [GO:0071004 "U2-type prespliceosome"
evidence=IDA] [GO:0071008 "U2-type post-mRNA release spliceosomal
complex" evidence=IDA] [GO:0000974 "Prp19 complex" evidence=IDA]
[GO:0071006 "U2-type catalytic step 1 spliceosome" evidence=IDA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IMP;IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006270 "DNA
replication initiation" evidence=IMP;IPI] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003688 "DNA replication
origin binding" evidence=IDA] [GO:0000386 "second spliceosomal
transesterification activity" evidence=IC] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
SGD:S000004107 GO:GO:0000785 GO:GO:0003682 EMBL:BK006945
GO:GO:0003688 GO:GO:0007049 GO:GO:0006270 Gene3D:1.25.40.10
EMBL:X89514 EMBL:U53877 GO:GO:0000974 GO:GO:0071006
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
OrthoDB:EOG4NKG44 EMBL:Z73289 PIR:S64954 RefSeq:NP_013218.1
ProteinModelPortal:Q12309 SMR:Q12309 DIP:DIP-1685N IntAct:Q12309
MINT:MINT-385873 STRING:Q12309 PaxDb:Q12309 PRIDE:Q12309
EnsemblFungi:YLR117C GeneID:850808 KEGG:sce:YLR117C CYGD:YLR117c
GeneTree:ENSGT00550000074931 NextBio:967040 Genevestigator:Q12309
GermOnline:YLR117C GO:GO:0071007 GO:GO:0071008 GO:GO:0071004
GO:GO:0000354 Uniprot:Q12309
Length = 687
Score = 134 (52.2 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 36/122 (29%), Positives = 68/122 (55%)
Query: 2 LEDDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELG 61
+++D + + ++ K AR+VFE+AI +++ + K+ R +LE + E ++G
Sbjct: 575 VDEDIEFEITDENKL---EARKVFEEAIVFFKEK--DDKQGRLSILEALKDYEETYGTEL 629
Query: 62 DVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEE---SQTTNLKILEAAYKWKK 118
D V+ + PK +KK R +G+ EE++DY+FP++ + K LE A KWK+
Sbjct: 630 DQETVKKRFPKVIKKVRL---QNGVE---EEFVDYIFPDDIDDDKPKPSKFLELAKKWKQ 683
Query: 119 QK 120
++
Sbjct: 684 EQ 685
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.130 0.363 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 126 126 0.00091 102 3 11 23 0.43 31
29 0.40 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 565 (60 KB)
Total size of DFA: 135 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.26u 0.11s 16.37t Elapsed: 00:00:01
Total cpu time: 16.26u 0.11s 16.37t Elapsed: 00:00:01
Start: Fri May 10 15:28:37 2013 End: Fri May 10 15:28:38 2013