BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033134
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2
SV=1
Length = 690
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Query: 14 KKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKK 73
K+ + + R+++E+A R E KEER MLLE W + E FG + D V +P+K
Sbjct: 563 KEGSVAKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEDEFGTVSDKERVDKLMPEK 620
Query: 74 LKKRRQTQSDDGLSAGYEEYIDYLFPEESQT-TNLKILEAAYKWKKQK 120
+KKRR+ Q+DDG AG+EEY DY+FPE++ NLK+L A WKKQ+
Sbjct: 621 VKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 668
>sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1
Length = 690
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Query: 14 KKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKK 73
K+ + + R+++E+A R E KEER MLLE W + E FG + D V +P+K
Sbjct: 563 KEGSVAKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEDEFGTVSDKERVDKLMPEK 620
Query: 74 LKKRRQTQSDDGLSAGYEEYIDYLFPEESQT-TNLKILEAAYKWKKQK 120
+KKRR+ Q+DDG AG+EEY DY+FPE++ NLK+L A WKKQ+
Sbjct: 621 VKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 668
>sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4
Length = 848
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 14 KKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKK 73
K+ + + R+++E+A R E KEER MLLE W + E FG D V +P+K
Sbjct: 724 KEGSLTKCRQIYEEANKTMRNC--EEKEERLMLLESWRSFEEEFGTASDKERVDKLMPEK 781
Query: 74 LKKRRQTQSDDGLSAGYEEYIDYLFPEESQT-TNLKILEAAYKWKKQK 120
+KKRR+ Q+DDG AG+EEY DY+FPE++ NLK+L A WKKQ+
Sbjct: 782 VKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPNLKLLAMAKLWKKQQ 829
>sp|P17886|CRN_DROME Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2
Length = 702
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 18 IQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKR 77
+Q ARR++E+A R KE R +LLE W + E + ++ V K+P+++KKR
Sbjct: 569 VQLARRIYERANEMLRQLGD--KESRVLLLEAWRDFERDASDSQEMQKVMDKMPRRIKKR 626
Query: 78 RQTQSDDGLSAGYEEYIDYLFPE-ESQTTNLKILEAAYKWKKQK 120
++ SD+G+ G+EE DY+FPE E NLK+L AA WK QK
Sbjct: 627 QKIVSDNGVEEGWEEVFDYIFPEDEMARPNLKLLAAAKMWKTQK 670
>sp|Q5K654|CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis
GN=CLF1 PE=3 SV=1
Length = 677
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 9/104 (8%)
Query: 19 QRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRR 78
+RAR VFE+A ++ E+KEER LL W + E + G D++ ++ ++P K+KKRR
Sbjct: 573 RRARMVFERAHKVFKEK--EMKEERVALLNAWKSFEQTHGSPDDIAKIERQMPSKVKKRR 630
Query: 79 QTQSDDGLSAGYEEYIDYLFP--EESQTTNLKILEAAYKWKKQK 120
+ D YEEY+DY+FP +ES +IL+ A+KWKK++
Sbjct: 631 KLDDD-----RYEEYLDYMFPADDESSAKLSQILQMAHKWKKEQ 669
>sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3
SV=1
Length = 676
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 9/102 (8%)
Query: 19 QRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRR 78
+RAR VFE+A ++ E+KEER LL W E + G D+ ++ ++P+++KKRR
Sbjct: 575 RRARAVFERAHKVFKEK--EMKEERVELLNAWRAFEHTHGSPEDIKKIEEQMPRRVKKRR 632
Query: 79 QTQSDDGLSAGYEEYIDYLFPEESQTTN--LKILEAAYKWKK 118
+ D YEEY+DY+FP + Q KIL+AA++WK+
Sbjct: 633 KLDDD-----RYEEYMDYVFPADDQAAASLTKILQAAHRWKQ 669
>sp|Q5BDX1|CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1
PE=3 SV=2
Length = 673
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 9/103 (8%)
Query: 19 QRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRR 78
+RAR VFE+A ++ ELKEER LL W E + G D+ ++ ++P+++KKRR
Sbjct: 572 RRARAVFERAHRVFKEK--ELKEERVELLNAWRAFEHTHGSPEDIDKIEKQMPRRVKKRR 629
Query: 79 QTQSDDGLSAGYEEYIDYLFPEESQT-TNL-KILEAAYKWKKQ 119
+ D YEEY+DY+FP + Q+ NL K+L A++WK++
Sbjct: 630 KLDDD-----RYEEYMDYVFPADDQSAANLSKLLRMAHQWKQE 667
>sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=clf-1 PE=3 SV=1
Length = 695
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 9/102 (8%)
Query: 20 RARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQ 79
RAR++FE+A + ELK ER LL WL E + G D+ +Q ++P+K KK+R+
Sbjct: 582 RARKIFERA--HKSMKERELKAERVSLLNAWLAFEKTHGSAEDIEKIQKQMPRKTKKKRK 639
Query: 80 TQSDDGLSAGYEEYIDYLFP-EESQTTNL-KILEAAYKWKKQ 119
+ D +EEY+DY+FP ++ QT NL +L A WK+Q
Sbjct: 640 LEDD-----TWEEYVDYIFPADDQQTKNLSSLLAMANAWKQQ 676
>sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1
PE=3 SV=1
Length = 705
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 7/79 (8%)
Query: 40 KEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFP 99
KEER +LLE W E +FG ++ V K+P+++ KRR DG + G EEY DY+FP
Sbjct: 610 KEERLLLLESWKEFEQTFGNQETLNQVLKKIPQRVIKRR----SDG-NGGIEEYFDYIFP 664
Query: 100 EE--SQTTNLKILEAAYKW 116
EE S T+LK+LEAA +W
Sbjct: 665 EEEKSTQTSLKLLEAAQRW 683
>sp|P87312|CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf4 PE=1 SV=1
Length = 674
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 12/123 (9%)
Query: 2 LEDDFQEHLYEQ--KKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGE 59
LEDD +E E+ + RAR VFE A+ + R LKEER +LLE W E+ G
Sbjct: 551 LEDDDEEPPNEEVASPTAVVRARNVFENALAHLRQQG--LKEERVVLLEAWKQFEAMHGT 608
Query: 60 LGDVSLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTN---LKILEAAYKW 116
V + +P+ +KKRR+ + DG +EEY+DYLFP+ + K+LE + KW
Sbjct: 609 EDTRKHVSSLMPQVVKKRRRLE--DG---SFEEYLDYLFPDTATDQGDKMRKMLELSRKW 663
Query: 117 KKQ 119
K++
Sbjct: 664 KEE 666
>sp|Q527H0|CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1
Length = 691
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 20 RARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQ 79
RARRVFE+A ++ E+K ER +L WL E + G D+ ++ ++P++ KK+R+
Sbjct: 578 RARRVFERAHQGFKDK--EMKAERVSILNAWLVFEKTHGSAEDIEKIEKQMPRRTKKKRK 635
Query: 80 TQSDDGLSAGYEEYIDYLFPEESQT 104
D +EEY+DY+FP + Q
Sbjct: 636 LDDD-----TWEEYVDYIFPADEQV 655
>sp|Q4PB37|CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CLF1 PE=3 SV=1
Length = 781
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 7 QEHLYEQKKQCI-QRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSL 65
+E L +Q++ + AR +F++A + ++ + LK+ER LLE W + E G +S
Sbjct: 614 EEALRQQRRSALASSAREIFQRAYDNLKSRS--LKDERVALLESWKSFEQQHGSAETLSR 671
Query: 66 VQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEE 101
V+AK P+ +KKRRQ + D EEY D +FP++
Sbjct: 672 VEAKFPRVVKKRRQVE--DSADGAMEEYYDLIFPDD 705
>sp|Q5AED6|CLF1_CANAL Pre-mRNA-splicing factor CLF1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=CLF1 PE=3 SV=2
Length = 758
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 18 IQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKR 77
I+ R +FE+A+ Y++ + KE R +++E W + E G +S V +LP ++KR
Sbjct: 660 IESTRNIFEEAMTYFKDK--DDKESRLVIIEAWRDFEEVNGSDESLSKVTKRLPVIVRKR 717
Query: 78 RQTQSDDGLSAGYEEYIDYLFPEESQTTNL-----KILEAAYKWKKQ 119
R S + EEYIDY+FP++ ++ L K L A KW +Q
Sbjct: 718 RTVGSIE------EEYIDYIFPDD-ESKKLPGKMSKFLANAKKWAQQ 757
>sp|Q6C186|CLF1_YARLI Pre-mRNA-splicing factor CLF1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CLF1 PE=3 SV=1
Length = 676
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 20 RARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQ 79
RAR +F +A + + A +EER +L E W E G+ + + + P +KK+R+
Sbjct: 580 RARSIFGEAWDALK--AANKREERVVLFESWREFEEEHGDDKSKADLDKRKPTPVKKKRK 637
Query: 80 TQSDDGLSAGYEEYIDYLFPEESQTTNL-KILEAAYKWKKQ 119
+ DG +EEYIDY+FP + + + K+LE A KWK Q
Sbjct: 638 LE--DGT---FEEYIDYVFPTDEEDKSFSKLLENARKWKLQ 673
>sp|Q6FW76|CLF1_CANGA Pre-mRNA-splicing factor CLF1 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CLF1
PE=3 SV=1
Length = 695
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 15/102 (14%)
Query: 21 ARRVFEKAINYYRTSAPELK--EERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRR 78
AR VFE+A+NY++ E+K E+RA +L+ +++ E +G++ ++ +LP + +
Sbjct: 596 ARDVFERALNYFK----EIKRDEDRARILQSYVDFEGQYGDISSRQRIEKRLPSIVNGIK 651
Query: 79 QTQSDDGLSAGYEEYIDYLFPEESQTTNL---KILEAAYKWK 117
DGL + I Y FP++ +N+ IL A+KWK
Sbjct: 652 DI---DGLKT---QNITYTFPDDENKSNIDTSNILALAHKWK 687
>sp|Q6BSP7|CLF1_DEBHA Pre-mRNA-splicing factor CLF1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CLF1 PE=3 SV=2
Length = 714
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 14/102 (13%)
Query: 21 ARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQT 80
R VF +A ++++ + LKE+RA+++E W E + G + + KLP +K+RR
Sbjct: 616 TRSVFREANDFFKHN--NLKEDRAVVIEAWKQYEEANGSEESLRDITKKLPVIVKRRRLI 673
Query: 81 QSDDGLSAGYEEYIDYLFPEESQTTNLKI------LEAAYKW 116
+ ++ EEY+DY+FPE+ + KI L A KW
Sbjct: 674 EGEE------EEYLDYIFPEDEEAKPSKISGLNAFLANAQKW 709
>sp|P0CO10|CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CLF1 PE=3 SV=1
Length = 726
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 21 ARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQT 80
AR+VFE+ R KE+RA+LLE W + E G+ ++ V+ LP K+ R
Sbjct: 590 ARQVFERGYKDLRAKGE--KEDRAVLLESWKSFEQEHGDEETLAKVEDMLPTTRKRWR-- 645
Query: 81 QSDDGLSAGYEEYIDYLFPEESQTTN 106
+++DG S EEY D +FP++ + N
Sbjct: 646 KAEDG-SGELEEYWDLVFPDDEREAN 670
>sp|P0CO11|CLF1_CRYNB Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CLF1 PE=3 SV=1
Length = 726
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 21 ARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQT 80
AR+VFE+ R KE+RA+LLE W + E G+ ++ V+ LP K+ R
Sbjct: 590 ARQVFERGYKDLRAKGE--KEDRAVLLESWKSFEQEHGDEETLAKVEDMLPTTRKRWR-- 645
Query: 81 QSDDGLSAGYEEYIDYLFPEESQTTN 106
+++DG S EEY D +FP++ + N
Sbjct: 646 KAEDG-SGELEEYWDLVFPDDEREAN 670
>sp|Q750X3|CLF1_ASHGO Pre-mRNA-splicing factor CLF1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CLF1 PE=3
SV=1
Length = 683
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 4 DDFQEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDV 63
DD E +E ++ ++ R +FEKA+ +Y + + E R ++L+ + + ES G
Sbjct: 570 DDAYEQEFELTEENKEQTRAIFEKALRHYTSEKDD--EGRILVLQAYKDYESIHGSAEAR 627
Query: 64 SLVQAKLPKKLKKRRQTQSDDGLSAGYEEYIDYLFPEESQTTN---LKILEAAYKWKKQK 120
+ ++ P+K+ ++R DG+ +EY+ Y FP+++ +T+ K + A +WK+Q+
Sbjct: 628 QKIASRQPRKVTRKRTV---DGIE---KEYVAYEFPDDTVSTSSVASKFVSLAQRWKQQQ 681
>sp|Q9HF03|CLF1_CRYNH Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
grubii serotype A (strain H99 / ATCC 208821 / CBS 10515
/ FGSC 9487) GN=CLF1 PE=3 SV=1
Length = 724
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 21 ARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQT 80
AR+VFE+ R KE+RA+LLE W + E G+ ++ V+ LP K+ R
Sbjct: 590 ARKVFERGYKDLRAKGE--KEDRAVLLESWKSFEQEHGDEEMLAKVEDMLPTTRKRWR-- 645
Query: 81 QSDDGLSAGYEEYIDYLFPEESQTTN 106
+++DG S EEY D +FP++ + N
Sbjct: 646 KAEDG-SGELEEYWDLVFPDDEKEAN 670
>sp|Q12309|CLF1_YEAST Pre-mRNA-splicing factor CLF1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CLF1 PE=1 SV=1
Length = 687
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 21 ARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLKKRRQT 80
AR+VFE+AI +++ K+ R +LE + E ++G D V+ + PK +KK R
Sbjct: 591 ARKVFEEAIVFFKEKDD--KQGRLSILEALKDYEETYGTELDQETVKKRFPKVIKKVR-- 646
Query: 81 QSDDGLSAGY-EEYIDYLFPEESQTTNL---KILEAAYKWKKQK 120
L G EE++DY+FP++ K LE A KWK+++
Sbjct: 647 -----LQNGVEEEFVDYIFPDDIDDDKPKPSKFLELAKKWKQEQ 685
>sp|A5WC71|TIG_PSYWF Trigger factor OS=Psychrobacter sp. (strain PRwf-1) GN=tig PE=3
SV=1
Length = 445
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 85 GLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKI 121
GL+AG E+ ID FPE+ Q NL EA +K +K+
Sbjct: 207 GLAAGEEKTIDVTFPEDYQAENLAGKEAQFKINVKKV 243
>sp|Q6MFC0|PHK_PARUW Probable phosphoketolase OS=Protochlamydia amoebophila (strain
UWE25) GN=pc0005 PE=3 SV=1
Length = 798
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 26 EKAINYYRTSA---PELKEERAMLLEEWLNM---ESSFGELGDVSLVQAKLPKKLKKR 77
+K NY+R+ ++KEE LLEEWL E F E G + + A+L K K+R
Sbjct: 306 KKTENYWRSHQVPFSDMKEEHIKLLEEWLKSYRPEELFDETGKLFPILAELAPKGKRR 363
>sp|Q5QXN7|TIG_IDILO Trigger factor OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM
15497 / L2-TR) GN=tig PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 85 GLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKIVSDD 125
G+ AG E+ I+ FPE+ NLK EA + +K+ + D
Sbjct: 204 GIKAGEEKTIEVTFPEDYHAENLKGKEAQFVVTAKKVEARD 244
>sp|C0ZAG1|TIG_BREBN Trigger factor OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC
100599) GN=tig PE=3 SV=1
Length = 430
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 85 GLSAGYEEYIDYLFPEESQTTNLKILEAAYKWK------KQKIVSDDE 126
GL+ G E+ I FPEE + NL EA +K K K V DDE
Sbjct: 206 GLNIGEEKEITVTFPEEYHSPNLAGKEAVFKVKLNSLKRKNMPVLDDE 253
>sp|A6VW19|TIG_MARMS Trigger factor OS=Marinomonas sp. (strain MWYL1) GN=tig PE=3 SV=1
Length = 441
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 85 GLSAGYEEYIDYLFPEESQTTNLKILEAAYK 115
G AG E I FPE+ Q NLK EA +K
Sbjct: 204 GAKAGEERTISVTFPEDYQAENLKGKEATFK 234
>sp|O27718|SYA_METTH Alanine--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=alaS PE=3 SV=1
Length = 898
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 5 DFQEHLYEQKKQCIQRARRVFEKAINYY-RTSAPELKEERAMLLEEWLNM-ESSFGELGD 62
D +EH Y + ++R RR+ EK I Y R E+ E + L + + + GE+ +
Sbjct: 398 DLEEHRYART---VKRGRRIVEKTIKYLKRDGKAEMPLEILIKLYDSHGIPPETIGEIAE 454
Query: 63 VSLVQAKLPKK----LKKRRQTQSD 83
S Q K+P + +R +T+++
Sbjct: 455 ESGFQVKIPDNFYTLVAERNETETE 479
>sp|Q2SK37|TIG_HAHCH Trigger factor OS=Hahella chejuensis (strain KCTC 2396) GN=tig PE=3
SV=1
Length = 446
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 85 GLSAGYEEYIDYLFPEESQTTNLKILEAAYKWKKQKI 121
GL AG E+ +D FPE+ NLK A ++ K K+
Sbjct: 204 GLKAGDEKTLDLTFPEDYHAENLKGKLAQFEVKVSKV 240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,385,070
Number of Sequences: 539616
Number of extensions: 1701558
Number of successful extensions: 4251
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 4163
Number of HSP's gapped (non-prelim): 91
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)