Query 033134
Match_columns 126
No_of_seqs 110 out of 195
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 16:46:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 97.9 6.9E-06 2.4E-10 72.6 3.7 64 7-75 509-572 (679)
2 2uy1_A Cleavage stimulation fa 96.9 2.2E-05 7.4E-10 66.0 -5.3 43 7-61 359-401 (493)
3 2ooe_A Cleavage stimulation fa 96.7 0.0018 6.3E-08 52.7 4.9 61 8-72 431-491 (530)
4 2uy1_A Cleavage stimulation fa 96.7 0.00068 2.3E-08 56.9 2.3 46 18-71 336-381 (493)
5 2ond_A Cleavage stimulation fa 89.9 0.33 1.1E-05 36.5 4.2 57 9-69 210-266 (308)
6 4e6h_A MRNA 3'-END-processing 74.5 5 0.00017 35.2 5.7 54 8-69 72-128 (679)
7 4h7y_A Dual specificity protei 57.7 12 0.00041 28.0 4.1 46 16-69 74-119 (161)
8 2ooe_A Cleavage stimulation fa 44.1 36 0.0012 27.1 5.2 47 15-69 25-71 (530)
9 2ond_A Cleavage stimulation fa 35.7 73 0.0025 23.3 5.5 44 16-67 183-226 (308)
10 4h7y_A Dual specificity protei 33.6 59 0.002 24.2 4.5 51 18-70 35-86 (161)
11 2k89_A PLA2P, PLAP, phospholip 23.9 6.7 0.00023 26.1 -1.9 27 92-118 14-50 (80)
12 3gw4_A Uncharacterized protein 23.8 55 0.0019 21.4 2.7 20 53-72 176-195 (203)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.87 E-value=6.9e-06 Score=72.59 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=53.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhhCChhhh
Q 033134 7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPKKLK 75 (126)
Q Consensus 7 ~~~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~~Pr~VK 75 (126)
.|+..++...++++||++|+||+..+. ..+.+..|+.+|..||..||+.+++.+|.+|+....-
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal~~~~-----~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSIDKIS-----DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTTTSS-----STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 577777778889999999999986532 1457889999999999999999999999999875554
No 2
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.87 E-value=2.2e-05 Score=66.00 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=28.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChh
Q 033134 7 QEHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELG 61 (126)
Q Consensus 7 ~~~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~ 61 (126)
.|++.++..++.++||.||+|+. . .+.|..+|..||..|||.+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--------k----~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--------K----TSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--------C----BHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--------H----HHHHHHHHHHHHHHCCCHH
Confidence 35666666666777777777772 1 1367777777777777754
No 3
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.67 E-value=0.0018 Score=52.72 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=46.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhhCCh
Q 033134 8 EHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLPK 72 (126)
Q Consensus 8 ~~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~~Pr 72 (126)
|+..+...++.++||.+|+||+.... ...+.+..|+..|..||..+|+.+++..|.+++-.
T Consensus 431 ~~~~~~~~g~~~~Ar~~~~~al~~~~----~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 431 YIDYLSHLNEDNNTRVLFERVLTSGS----LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHSCC----SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHhhHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555666788999999999986532 22345667999999999999999999988877533
No 4
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.66 E-value=0.00068 Score=56.86 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhhCC
Q 033134 18 IQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAKLP 71 (126)
Q Consensus 18 ~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~~P 71 (126)
.++||+||++|+..+. +..+ .++. +..||...|+.+....|-.+.+
T Consensus 336 ~~~ar~ife~al~~~~----~~~~---~~~~-yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 336 RATPYNIFSSGLLKHP----DSTL---LKEE-FFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp SHHHHHHHHHHHHHCT----TCHH---HHHH-HHHHHHHHTCHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHCC----CCHH---HHHH-HHHHHHHcCCHHHHHHHHHHHH
Confidence 5556666666655431 1111 1222 4455555555555555544444
No 5
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=89.93 E-value=0.33 Score=36.47 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=39.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q 033134 9 HLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAK 69 (126)
Q Consensus 9 ~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~ 69 (126)
......-++.++||.+|++|+..+... + .....|...|..||..+|+.+....+..+
T Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~l~-p---~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 210 IDYLSHLNEDNNTRVLFERVLTSGSLP-P---EKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHSSSSC-G---GGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhccCCC-H---HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444567889999999998642111 1 12346788899999999998877776655
No 6
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=74.48 E-value=5 Score=35.25 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=37.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCC---hhhHHHHHhh
Q 033134 8 EHLYEQKKQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGE---LGDVSLVQAK 69 (126)
Q Consensus 8 ~~~~e~~~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~---~~~~~~V~k~ 69 (126)
|+........+..+|.||+|++..|-.. . .+--.|..+|..+|+ .+.+..|-.+
T Consensus 72 yi~~~~~~~~~~~aR~vyEraL~~fP~~----~----~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 72 LLKHHVSLKQWKQVYETFDKLHDRFPLM----A----NIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC----H----HHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHCCCC----H----HHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 4554555567899999999999887542 1 366778889999998 6666555555
No 7
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=57.75 E-value=12 Score=27.98 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q 033134 16 QCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAK 69 (126)
Q Consensus 16 ~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~ 69 (126)
.++++||.||..|+...| .- +-+--++-.||-.+|+...-.+|..+
T Consensus 74 ~D~d~aR~vy~~a~~~hK----kF----AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCK----KF----AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HCGGGCHHHHHHHHHHCT----TB----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhH----HH----HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 678999999999987622 33 46777888999999998777766654
No 8
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=44.13 E-value=36 Score=27.15 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q 033134 15 KQCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQAK 69 (126)
Q Consensus 15 ~~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~k~ 69 (126)
..+++.||.+|++|+..+- ... .+.-.|-.+|..+|+.+....+-.+
T Consensus 25 ~~~~~~a~~~~e~al~~~P----~~~----~~w~~~~~~~~~~~~~~~a~~~~~r 71 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFP----SSG----RFWKLYIEAEIKAKNYDKVEKLFQR 71 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCT----TCH----HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCC----CCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4567888888888876542 222 3555566677778877666555554
No 9
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=35.69 E-value=73 Score=23.31 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCChhhHHHHH
Q 033134 16 QCIQRARRVFEKAINYYRTSAPELKEERAMLLEEWLNMESSFGELGDVSLVQ 67 (126)
Q Consensus 16 ~~~~~AR~Vfera~~~~k~~~~~~kEeR~~LLeaWk~fE~~~G~~~~~~~V~ 67 (126)
.+.+.|+.+|++|+..+- +. ..++..+-.|+...|+.+....+-
T Consensus 183 ~~~~~A~~~~~~al~~~p----~~----~~~~~~~~~~~~~~g~~~~A~~~~ 226 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYG----DI----PEYVLAYIDYLSHLNEDNNTRVLF 226 (308)
T ss_dssp CCHHHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----Cc----HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345566677777665431 21 245566667788888875544443
No 10
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=33.58 E-value=59 Score=24.21 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCcHHHHH-HHHHHHHHHHHhcCChhhHHHHHhhC
Q 033134 18 IQRARRVFEKAINYYRTSAPELKEERA-MLLEEWLNMESSFGELGDVSLVQAKL 70 (126)
Q Consensus 18 ~~~AR~Vfera~~~~k~~~~~~kEeR~-~LLeaWk~fE~~~G~~~~~~~V~k~~ 70 (126)
+++.|.||+||+..+--.. ...-+|. .|+-.+..|++. +|.+....|=+.+
T Consensus 35 l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~~ei-~D~d~aR~vy~~a 86 (161)
T 4h7y_A 35 LNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAELKAI-QEPDDARDYFQMA 86 (161)
T ss_dssp HHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHHHHH-HCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 4899999999998764321 1122333 343444445544 7766655555444
No 11
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=23.94 E-value=6.7 Score=26.15 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=16.6
Q ss_pred EeEeeecCCCCC--CcHH--------HHHHHHHHHHH
Q 033134 92 EYIDYLFPEESQ--TTNL--------KILEAAYKWKK 118 (126)
Q Consensus 92 EY~DYiFPdD~~--~~~~--------KlL~~AkkWK~ 118 (126)
..|||||+-|-. .+.+ .-..+|++|=.
T Consensus 14 keYDyVFdVdi~dG~~~lkLpyN~~dnP~~aAqkFi~ 50 (80)
T 2k89_A 14 KEFDYVFSIDVNEGGPSYKLPYNTSDDPWLTAYNFLQ 50 (80)
T ss_dssp EEESEEEEECCSSSCSCEEEEECTTSCHHHHHHHHHH
T ss_pred ccccEEEEEEcCCCCcccccCccCCCCHHHHHHHHHH
Confidence 358999998843 1111 34667777643
No 12
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=23.79 E-value=55 Score=21.44 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=11.4
Q ss_pred HHHhcCChhhHHHHHhhCCh
Q 033134 53 MESSFGELGDVSLVQAKLPK 72 (126)
Q Consensus 53 fE~~~G~~~~~~~V~k~~Pr 72 (126)
+=...|+...+..+...+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~ 195 (203)
T 3gw4_A 176 IFAELEDSEAVNELMTRLNG 195 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHhcccc
Confidence 33445777666666655443
Done!