BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033135
         (126 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZVI|A Chain A, Methylaspartate Ammonia Lyase From Clostridium
           Tetanomorphum Mutant L384a
 pdb|3ZVI|B Chain B, Methylaspartate Ammonia Lyase From Clostridium
           Tetanomorphum Mutant L384a
          Length = 438

 Score = 27.7 bits (60), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 26  ASPVLAKSRRPISDIEVRQKKMDCYADVESGLWGPQCKSSMIAKENC 72
           A P   +   P+ D+E RQK+M+   D+ + L G    + ++A E C
Sbjct: 265 AKPFHLRIEGPM-DVEDRQKQMEAMRDLRAELDGRGVDAELVADEWC 310


>pdb|3ZVH|A Chain A, Methylaspartate Ammonia Lyase From Clostridium
           Tetanomorphum Mutant Q73a
 pdb|3ZVH|B Chain B, Methylaspartate Ammonia Lyase From Clostridium
           Tetanomorphum Mutant Q73a
          Length = 438

 Score = 27.7 bits (60), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 26  ASPVLAKSRRPISDIEVRQKKMDCYADVESGLWGPQCKSSMIAKENC 72
           A P   +   P+ D+E RQK+M+   D+ + L G    + ++A E C
Sbjct: 265 AKPFHLRIEGPM-DVEDRQKQMEAMRDLRAELDGRGVDAELVADEWC 310


>pdb|1KCZ|A Chain A, Crystal Structure Of Beta-Methylaspartase From Clostridium
           Tetanomorphum. Mg-Complex.
 pdb|1KCZ|B Chain B, Crystal Structure Of Beta-Methylaspartase From Clostridium
           Tetanomorphum. Mg-Complex
          Length = 413

 Score = 27.7 bits (60), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 26  ASPVLAKSRRPISDIEVRQKKMDCYADVESGLWGPQCKSSMIAKENC 72
           A P   +   P+ D+E RQK+M+   D+ + L G    + ++A E C
Sbjct: 265 AKPFHLRIEGPM-DVEDRQKQMEAMRDLRAELDGRGVDAELVADEWC 310


>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
           Arabidopsis Thaliana
 pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
           Arabidopsis Thaliana
 pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
           Arabidopsis Thaliana
          Length = 354

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 74  LRCLSPTCYEFVYES-DPLEEGEKDFVRSQ--EFKYCM--HKLSLGESLEGIRGSFDY 126
           L+   P  +  VY++   L +G K+F +++    KY +    +++GE L  I G  DY
Sbjct: 42  LKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIAIGEKLSEIGGRLDY 99


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,068,698
Number of Sequences: 62578
Number of extensions: 101528
Number of successful extensions: 203
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 6
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)