BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033135
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JHY3|WFD12_MOUSE WAP four-disulfide core domain protein 12 OS=Mus musculus
GN=Wfdc12 PE=2 SV=1
Length = 85
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 10 NSLLILL-LLIASTLLFASPVLAKSRR--PISDIE-VRQKKMDCYADVESGLWGPQCKSS 65
NS+L+L+ LLI+STL+ V + +R P + +RQ CY+D + G
Sbjct: 4 NSILVLMTLLISSTLVTGGGVKGEEKRVCPPDYVRCIRQDDPQCYSDNDCG------DQE 57
Query: 66 MIAKENCALRCLSPT 80
+ C +C+ P
Sbjct: 58 ICCFWQCGFKCVLPV 72
>sp|Q81ZG1|DNLJ_BACAN DNA ligase OS=Bacillus anthracis GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|C3L543|DNLJ_BACAC DNA ligase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495)
GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|C3PBP1|DNLJ_BACAA DNA ligase OS=Bacillus anthracis (strain A0248) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|B7JM96|DNLJ_BACC0 DNA ligase OS=Bacillus cereus (strain AH820) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|A9VRG3|DNLJ_BACWK DNA ligase OS=Bacillus weihenstephanensis (strain KBAB4) GN=ligA
PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|Q6HP94|DNLJ_BACHK DNA ligase OS=Bacillus thuringiensis subsp. konkukian (strain
97-27) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|Q63GS3|DNLJ_BACCZ DNA ligase OS=Bacillus cereus (strain ZK / E33L) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|Q81IP2|DNLJ_BACCR DNA ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ligA
PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|C1EV74|DNLJ_BACC3 DNA ligase OS=Bacillus cereus (strain 03BB102) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|A0R906|DNLJ_BACAH DNA ligase OS=Bacillus thuringiensis (strain Al Hakam) GN=ligA PE=3
SV=1
Length = 669
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|Q73EM3|DNLJ_BACC1 DNA ligase OS=Bacillus cereus (strain ATCC 10987) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|B7H4U8|DNLJ_BACC4 DNA ligase OS=Bacillus cereus (strain B4264) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|B9J1L6|DNLJ_BACCQ DNA ligase OS=Bacillus cereus (strain Q1) GN=ligA PE=3 SV=2
Length = 669
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|B7HSW5|DNLJ_BACC7 DNA ligase OS=Bacillus cereus (strain AH187) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|B7IUW5|DNLJ_BACC2 DNA ligase OS=Bacillus cereus (strain G9842) GN=ligA PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 60 PQCKSSMIA-KENCALRCLSPTC 81
P C+S ++ +E ALRC++PTC
Sbjct: 406 PACESELVRLEEEVALRCINPTC 428
>sp|Q6BJ08|OS9_DEBHA Protein OS-9 homolog OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YOS9 PE=3
SV=2
Length = 589
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 79 PTCYEFVYESDPLEEGEKDFVRSQEFKYCMHKLSLG 114
P + +Y+ DP G + + QE K C++++ +G
Sbjct: 246 PRSIDIIYKCDPNHRGRIEILDQQEIKTCVYQMVIG 281
>sp|Q8VIK5|PEAR1_MOUSE Platelet endothelial aggregation receptor 1 OS=Mus musculus
GN=Pear1 PE=1 SV=1
Length = 1034
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 48 DCYADVESGLWGPQCKSSMIAKENCALRCLSPTCY 82
DC ++ G+WGPQC N + S TC+
Sbjct: 128 DCSSECAPGMWGPQCDKFCHCGNNSSCDPKSGTCF 162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,148,584
Number of Sequences: 539616
Number of extensions: 1502437
Number of successful extensions: 3172
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3168
Number of HSP's gapped (non-prelim): 23
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)