Query 033135
Match_columns 126
No_of_seqs 35 out of 37
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 16:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k5c_A Uncharacterized protein 62.2 1.1 3.7E-05 32.2 -0.9 30 77-106 53-83 (95)
2 1co7_I BPTI, bovine pancreatic 13.9 39 0.0013 22.7 0.0 14 44-57 34-47 (99)
3 1wig_A KIAA1808 protein; LIM d 9.8 1.2E+02 0.0041 18.3 1.3 17 77-93 55-71 (73)
4 3lqv_P Splicing factor 3B subu 8.4 1.5E+02 0.0052 18.1 1.3 14 31-44 17-30 (39)
5 3i5g_B Myosin regulatory light 8.3 2E+02 0.0069 19.0 2.1 24 30-54 3-26 (153)
6 1nz8_A Transcription antitermi 7.3 2.3E+02 0.008 18.8 2.1 19 31-49 97-115 (119)
7 3bx4_B Aggretin beta chain; to 7.2 93 0.0032 20.0 0.0 9 66-74 47-55 (146)
8 2zz9_A Aquaporin-4; water tran 7.0 98 0.0033 24.8 0.0 25 93-120 277-301 (301)
9 2oug_A Transcriptional activat 6.7 1.9E+02 0.0067 19.8 1.4 20 31-50 82-101 (162)
10 3iyo_A Capsid protein; amino a 6.7 1E+02 0.0035 28.2 -0.0 43 9-60 2-44 (660)
No 1
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=62.24 E-value=1.1 Score=32.19 Aligned_cols=30 Identities=37% Similarity=0.492 Sum_probs=27.0
Q ss_pred cChhhHhhhhcCC-CCCccchhhhhhhhhHH
Q 033135 77 LSPTCYEFVYESD-PLEEGEKDFVRSQEFKY 106 (126)
Q Consensus 77 iSpsCY~~iYg~D-pLEEGEiDv~R~~sFk~ 106 (126)
.||.|-++.||.. |-+|+|.=++=+|.|||
T Consensus 53 kCP~CgEEFyG~~Lp~~EaeKVFELLNdFkG 83 (95)
T 2k5c_A 53 KCPVCGEEFYGKTLPRREAEKVFELLNDFKG 83 (95)
T ss_dssp ECTTTCCEEETTSSCTTTHHHHHHHHHSCSS
T ss_pred cCCCccHHHhcccCChHHHHHHHHHHHHccC
Confidence 4799999999987 79999999999999986
No 2
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=13.87 E-value=39 Score=22.73 Aligned_cols=14 Identities=21% Similarity=0.225 Sum_probs=3.4
Q ss_pred HHHhhhhhhhhcCc
Q 033135 44 QKKMDCYADVESGL 57 (126)
Q Consensus 44 q~k~~C~~die~Gl 57 (126)
++...|.+..+.|-
T Consensus 34 ~~~~~C~~p~~~G~ 47 (99)
T 1co7_I 34 QRPDFCLEPPYTGP 47 (99)
T ss_dssp ---------CCCCS
T ss_pred CCCccCCCCCcCCC
Confidence 44567888877764
No 3
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=9.83 E-value=1.2e+02 Score=18.25 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=13.0
Q ss_pred cChhhHhhhhcCCCCCc
Q 033135 77 LSPTCYEFVYESDPLEE 93 (126)
Q Consensus 77 iSpsCY~~iYg~DpLEE 93 (126)
.|+.||+.++..+...+
T Consensus 55 yC~~C~~~~~~~~~~r~ 71 (73)
T 1wig_A 55 WHPACRQAARTEDSGPS 71 (73)
T ss_dssp ECTTHHHHTSSSSCCSC
T ss_pred EChHHChHhhcccccCC
Confidence 46789999998776543
No 4
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=8.43 E-value=1.5e+02 Score=18.05 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=10.9
Q ss_pred hcCCCCCcHHHHHH
Q 033135 31 AKSRRPISDIEVRQ 44 (126)
Q Consensus 31 aks~~~isD~Eirq 44 (126)
..-+||.||.|+-.
T Consensus 17 ~~RNrpltDEeLD~ 30 (39)
T 3lqv_P 17 DERNRPLSDEELDA 30 (39)
T ss_dssp HHTTCCCCHHHHHH
T ss_pred hhhcCCCCHHHHHH
Confidence 35679999999854
No 5
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=8.31 E-value=2e+02 Score=19.01 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=14.0
Q ss_pred hhcCCCCCcHHHHHHHHhhhhhhhh
Q 033135 30 LAKSRRPISDIEVRQKKMDCYADVE 54 (126)
Q Consensus 30 ~aks~~~isD~Eirq~k~~C~~die 54 (126)
.+..+..+|+.||.+.+.+ ..-+|
T Consensus 3 ~~~~~~~Lt~~qi~elk~~-F~~~D 26 (153)
T 3i5g_B 3 EAPRRVKLSQRQMQELKEA-FTMID 26 (153)
T ss_dssp ----CTTCCHHHHHHHHHH-HHHHC
T ss_pred CcccccCCCHHHHHHHHHH-HHHHC
Confidence 3456678999999888754 34443
No 6
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=7.35 E-value=2.3e+02 Score=18.77 Aligned_cols=19 Identities=26% Similarity=0.142 Sum_probs=15.5
Q ss_pred hcCCCCCcHHHHHHHHhhh
Q 033135 31 AKSRRPISDIEVRQKKMDC 49 (126)
Q Consensus 31 aks~~~isD~Eirq~k~~C 49 (126)
...|.|++|.||.......
T Consensus 97 g~~P~pi~~~ev~~i~~~~ 115 (119)
T 1nz8_A 97 GMRPVPLSPDEVRHILEVS 115 (119)
T ss_dssp SSSSCBCCHHHHHHHHHHH
T ss_pred CCEEeECCHHHHHHHHHHH
Confidence 4678999999998877654
No 7
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_B
Probab=7.24 E-value=93 Score=20.02 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=4.6
Q ss_pred hhHHHHHHH
Q 033135 66 MIAKENCAL 74 (126)
Q Consensus 66 ~iakeNCv~ 74 (126)
..|+..|..
T Consensus 47 ~~A~~~C~~ 55 (146)
T 3bx4_B 47 ADAERFCKL 55 (146)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 455555543
No 8
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=6.99 E-value=98 Score=24.82 Aligned_cols=25 Identities=36% Similarity=0.231 Sum_probs=0.0
Q ss_pred ccchhhhhhhhhHHHHHhhccCcccccc
Q 033135 93 EGEKDFVRSQEFKYCMHKLSLGESLEGI 120 (126)
Q Consensus 93 EGEiDv~R~~sFk~C~~~~S~Gesl~gv 120 (126)
+--+|+.|++|=|. |++.||-|+.|
T Consensus 277 ~~~~~~~~~~~~~~---~~~~~~~~~~~ 301 (301)
T 2zz9_A 277 VHVIDIDRGDEKKG---KDSSGEVLSSV 301 (301)
T ss_dssp ----------------------------
T ss_pred eeeeecccchhhcc---CCCCcccccCC
Confidence 34477888888887 88889888764
No 9
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=6.70 E-value=1.9e+02 Score=19.83 Aligned_cols=20 Identities=10% Similarity=-0.051 Sum_probs=16.3
Q ss_pred hcCCCCCcHHHHHHHHhhhh
Q 033135 31 AKSRRPISDIEVRQKKMDCY 50 (126)
Q Consensus 31 aks~~~isD~Eirq~k~~C~ 50 (126)
...|.|++|+||......+.
T Consensus 82 g~~p~pi~~~ei~~i~~~~~ 101 (162)
T 2oug_A 82 GASPAIVPSAVIHQLSVYKP 101 (162)
T ss_dssp SSSSCCCCCHHHHHHHHCC-
T ss_pred CCEeeEcCHHHHHHHHhhhc
Confidence 46789999999999887763
No 10
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy, dimerization, image processing, computer-assist molecular sequence DATA; 10.50A {Hepatitis e virus}
Probab=6.69 E-value=1e+02 Score=28.24 Aligned_cols=43 Identities=30% Similarity=0.457 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhcchhhhcCCCCCcHHHHHHHHhhhhhhhhcCcccc
Q 033135 9 RNSLLILLLLIASTLLFASPVLAKSRRPISDIEVRQKKMDCYADVESGLWGP 60 (126)
Q Consensus 9 r~~~~~l~~l~~~~~~~~~~~~aks~~~isD~Eirq~k~~C~~die~Glwg~ 60 (126)
|+..+.||||+++-+|.+.++-..+.| ++-+|...--.|.||.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 44 (660)
T 3iyo_A 2 RPRPILLLLLMFLPMLPAPPPGQPSGR---------RRGRRSGGSGGGFWGD 44 (660)
T ss_pred CcccchhhHHhhcccccCCCCCCcccc---------ccccccCCCCCCcccC
Done!