BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033136
MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPAA
ATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYV
TFNHFK

High Scoring Gene Products

Symbol, full name Information P value
PSAE-1
PSA E1 KNOCKOUT
protein from Arabidopsis thaliana 1.6e-10
PSAE-2
photosystem I subunit E-2
protein from Arabidopsis thaliana 3.6e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033136
        (126 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2117818 - symbol:PSAE-1 "PSA E1 KNOCKOUT" spec...    97  1.6e-10   2
TAIR|locus:2038942 - symbol:PSAE-2 "photosystem I subunit...   135  3.6e-09   1


>TAIR|locus:2117818 [details] [associations]
            symbol:PSAE-1 "PSA E1 KNOCKOUT" species:3702 "Arabidopsis
            thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009522
            "photosystem I" evidence=IEA] [GO:0009538 "photosystem I reaction
            center" evidence=IEA;ISS] [GO:0015979 "photosynthesis"
            evidence=IEA;RCA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0010287
            "plastoglobule" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
            [GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0006364 "rRNA processing"
            evidence=RCA] [GO:0009657 "plastid organization" evidence=RCA]
            [GO:0010207 "photosystem II assembly" evidence=RCA] [GO:0019344
            "cysteine biosynthetic process" evidence=RCA] InterPro:IPR003375
            Pfam:PF02427 ProDom:PD004772 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0009941 EMBL:AL161573 GO:GO:0009535
            GO:GO:0010287 EMBL:AL035353 GO:GO:0015979 PDB:2O01 PDB:2WSC
            PDB:2WSE PDB:2WSF PDBsum:2O01 PDBsum:2WSC PDBsum:2WSE PDBsum:2WSF
            InterPro:IPR008990 SUPFAM:SSF50090 GO:GO:0009538 EMBL:AJ245908
            EMBL:AY042790 EMBL:AY081687 IPI:IPI00532440 PIR:T04524
            RefSeq:NP_567818.2 UniGene:At.25566 UniGene:At.3352
            UniGene:At.69426 ProteinModelPortal:Q9S831 SMR:Q9S831 STRING:Q9S831
            PaxDb:Q9S831 PRIDE:Q9S831 ProMEX:Q9S831 EnsemblPlants:AT4G28750.1
            GeneID:828996 KEGG:ath:AT4G28750 TAIR:At4g28750 eggNOG:NOG08807
            HOGENOM:HOG000242291 InParanoid:Q9S831 KO:K02693 OMA:RRESYWF
            PhylomeDB:Q9S831 ProtClustDB:PLN00045 EvolutionaryTrace:Q9S831
            Genevestigator:Q9S831 GermOnline:AT4G28750 Uniprot:Q9S831
        Length = 143

 Score = 97 (39.2 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
 Identities = 18/22 (81%), Positives = 20/22 (90%)

Query:    88 VKILRRESYWYNGIGSVVAVDQ 109
             VKILRRESYW+  +GSVVAVDQ
Sbjct:    87 VKILRRESYWFKNVGSVVAVDQ 108

 Score = 63 (27.2 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query:     6 MASAASGFSLTPNVATNVN-SGSKSNMLFFPPKNNSSNSFRLVVRAS 51
             M +A++ F L  NV +    S S+S++ F P +N  S   RLVVRA+
Sbjct:     3 MTTASTVFVLPANVTSVAGASSSRSSVSFLPMRNAGS---RLVVRAA 46


>TAIR|locus:2038942 [details] [associations]
            symbol:PSAE-2 "photosystem I subunit E-2" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009522 "photosystem I" evidence=IEA] [GO:0009538 "photosystem
            I reaction center" evidence=IEA;ISS] [GO:0015979 "photosynthesis"
            evidence=IEA;RCA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
            "thylakoid" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0019684 "photosynthesis, light reaction" evidence=RCA]
            [GO:0030003 "cellular cation homeostasis" evidence=RCA] [GO:0070838
            "divalent metal ion transport" evidence=RCA] InterPro:IPR003375
            Pfam:PF02427 ProDom:PD004772 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0009941 GO:GO:0009535 EMBL:AC006569
            GO:GO:0010287 GO:GO:0015979 InterPro:IPR008990 SUPFAM:SSF50090
            UniGene:At.23286 GO:GO:0009538 TCDB:5.B.4.1.1 HOGENOM:HOG000242291
            KO:K02693 ProtClustDB:PLN00045 EMBL:AJ245909 EMBL:AY042823
            EMBL:BT002540 IPI:IPI00532807 PIR:A84587 RefSeq:NP_179616.1
            UniGene:At.39720 ProteinModelPortal:Q9S714 SMR:Q9S714 STRING:Q9S714
            PaxDb:Q9S714 PRIDE:Q9S714 ProMEX:Q9S714 EnsemblPlants:AT2G20260.1
            GeneID:816545 KEGG:ath:AT2G20260 TAIR:At2g20260 eggNOG:NOG316512
            InParanoid:Q9S714 OMA:SFLPMRS PhylomeDB:Q9S714
            BioCyc:MetaCyc:MONOMER-1096 Genevestigator:Q9S714
            GermOnline:AT2G20260 Uniprot:Q9S714
        Length = 145

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 41/112 (36%), Positives = 49/112 (43%)

Query:     6 MASAASGFSLTPNVATNVNSGS-KSNML--FFPPKNNSSNSFRLVVRASXXXXXXXXXXX 62
             M SAA+GF LT NV   +  GS KS  +  F P ++  S   RLVVRA+           
Sbjct:     3 MTSAATGFILTANVPAAIGGGSSKSTTIVSFLPMRSFGS---RLVVRAAEDTPPATASSD 59

Query:    63 XXXXXXXXXXXXXXXXXXXX-----XXXXXVKILRRESYWYNGIGSVVAVDQ 109
                                           VKILR+ESYWY  +GSVVAVDQ
Sbjct:    60 SSSTTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQ 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.131   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126        90   0.00091  102 3  11 22  0.42    29
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  511 (54 KB)
  Total size of DFA:  98 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.23u 0.15s 8.38t   Elapsed:  00:00:01
  Total cpu time:  8.23u 0.15s 8.38t   Elapsed:  00:00:01
  Start:  Fri May 10 15:31:14 2013   End:  Fri May 10 15:31:15 2013

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