BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033136
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q41228|PSAEA_NICSY Photosystem I reaction center subunit IV A, chloroplastic
OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1
Length = 141
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 80/110 (72%), Gaps = 4/110 (3%)
Query: 1 MASCNMASAASGFSL-TPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPA 59
MASCNMASAAS F + TPNVA+N N+ S++ MLFF KN S + RLVVRA+EEAA P A
Sbjct: 1 MASCNMASAASNFLVATPNVASNTNT-SRTTMLFFSSKNYGSTAPRLVVRAAEEAAPPAA 59
Query: 60 AATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
AAT A KP PPIGPKRG KV+ILR+ESYWY G GSVVA DQ
Sbjct: 60 AATAEPAEAPVKAAKP--PPIGPKRGTKVRILRKESYWYKGTGSVVACDQ 107
>sp|P13194|PSAE_HORVU Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum
vulgare GN=PSAE PE=1 SV=2
Length = 147
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 66/121 (54%), Gaps = 21/121 (17%)
Query: 1 MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAA---- 56
MAS NMASA S F L + + N G S + F P ++ +LV RA E AA
Sbjct: 1 MASTNMASATSRFMLAAGIPSGANGGVSSRVSFLP---SNRLGLKLVARAEEPTAAAPAE 57
Query: 57 --------PPAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVD 108
P AA T PA K KPPP GPKRG KVKILRRESYWYNG GSVV VD
Sbjct: 58 PAPAADEKPEAAVATKEPA------KAKPPPRGPKRGTKVKILRRESYWYNGTGSVVTVD 111
Query: 109 Q 109
Q
Sbjct: 112 Q 112
>sp|Q9S714|PSAE2_ARATH Photosystem I reaction center subunit IV B, chloroplastic
OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1
Length = 145
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 72/112 (64%), Gaps = 11/112 (9%)
Query: 6 MASAASGFSLTPNVATNVNSGS-KSNML--FFPPKNNSSNSFRLVVRASEEA-----AAP 57
M SAA+GF LT NV + GS KS + F P ++ S RLVVRA+E+ ++
Sbjct: 3 MTSAATGFILTANVPAAIGGGSSKSTTIVSFLPMRSFGS---RLVVRAAEDTPPATASSD 59
Query: 58 PAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
++ T AA A K KPPPIGPKRG+KVKILR+ESYWY +GSVVAVDQ
Sbjct: 60 SSSTTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQ 111
>sp|Q41229|PSAEB_NICSY Photosystem I reaction center subunit IV B, chloroplastic
OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1
Length = 143
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 74/101 (73%), Gaps = 6/101 (5%)
Query: 12 GFSL-TPNVATNVNSGSKSNMLFFPP-KNNSSNSF-RLVVRASEEAAAPPAAATTAAPAE 68
GF + TPN+AT+ N+ +++MLFF KNN++ +F RLVVRA+EEAA P A AT A
Sbjct: 12 GFMVATPNIATS-NTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPAATATAEGEAP 70
Query: 69 GEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
A KP P IGPKRG KV++LR+ESYWY G+GSVVAVDQ
Sbjct: 71 PAKAAKPPP--IGPKRGTKVRVLRKESYWYKGVGSVVAVDQ 109
>sp|P12354|PSAE_SPIOL Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia
oleracea GN=PSAE-1 PE=1 SV=1
Length = 125
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 29/30 (96%)
Query: 80 IGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
IGPKRG+KV+I+R+ESYWY G+GSVVAVDQ
Sbjct: 62 IGPKRGSKVRIMRKESYWYKGVGSVVAVDQ 91
>sp|P12352|PSAE_CHLRE Photosystem I reaction center subunit IV, chloroplastic
OS=Chlamydomonas reinhardtii GN=PSAE PE=1 SV=1
Length = 97
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 36/65 (55%), Gaps = 19/65 (29%)
Query: 45 RLVVRASEEAAAPPAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSV 104
RLVVRA E AAP +GPKRG+ VKILR ESYW+N +G V
Sbjct: 19 RLVVRAEEVKAAPK-------------------KEVGPKRGSLVKILRPESYWFNQVGKV 59
Query: 105 VAVDQ 109
V+VDQ
Sbjct: 60 VSVDQ 64
>sp|Q9S831|PSAE1_ARATH Photosystem I reaction center subunit IV A, chloroplastic
OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1
Length = 143
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Query: 6 MASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEE----AAAPPAAA 61
M +A++ F L NV + + S + + F P N+ + RLVVRA+E+ +++ +
Sbjct: 3 MTTASTVFVLPANVTSVAGASSSRSSVSFLPMRNAGS--RLVVRAAEDPAPASSSSKDSP 60
Query: 62 TTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQ 109
AA +G A KPKPPPIGPKRG+KVKILRRESYW+ +GSVVAVDQ
Sbjct: 61 AAAAAPDGATATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQ 108
>sp|P0A423|PSAE_THEEB Photosystem I reaction center subunit IV OS=Thermosynechococcus
elongatus (strain BP-1) GN=psaE PE=1 SV=2
Length = 76
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
+RG+KVKILR ESYWYN +G+V +VDQ
Sbjct: 3 QRGSKVKILRPESYWYNEVGTVASVDQ 29
>sp|P0A424|PSAE_SYNEL Photosystem I reaction center subunit IV OS=Synechococcus elongatus
GN=psaE PE=1 SV=2
Length = 76
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
+RG+KVKILR ESYWYN +G+V +VDQ
Sbjct: 3 QRGSKVKILRPESYWYNEVGTVASVDQ 29
>sp|Q1XDG0|PSAE_PORYE Photosystem I reaction center subunit IV OS=Porphyra yezoensis
GN=psaE PE=3 SV=1
Length = 62
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 24/27 (88%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
+RG+KVKILR+ESYWY IG+V A+D+
Sbjct: 2 ERGSKVKILRKESYWYQEIGTVAAIDK 28
>sp|P48114|PSAE_CYAPA Photosystem I reaction center subunit IV OS=Cyanophora paradoxa
GN=psaE PE=3 SV=1
Length = 70
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 24/27 (88%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
+RG+KV+ILR+ESYWY IG+V ++DQ
Sbjct: 3 QRGSKVRILRKESYWYQEIGTVASIDQ 29
>sp|P31969|PSAE_SYNP2 Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=psaE PE=1 SV=2
Length = 70
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 2/41 (4%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFN 123
+RG+KVKILR+ESYWY +G+V ++D+ + I+ V V FN
Sbjct: 4 ERGSKVKILRKESYWYGDVGTVASIDKSGI--IYPVIVRFN 42
>sp|P49482|PSAE_ODOSI Photosystem I reaction center subunit IV OS=Odontella sinensis
GN=psaE PE=3 SV=1
Length = 71
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 23/26 (88%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQ 109
RG+KV+ILR+ESYW+N +G++ +DQ
Sbjct: 4 RGSKVRILRKESYWFNQVGTIATIDQ 29
>sp|Q117D3|PSAE_TRIEI Photosystem I reaction center subunit IV OS=Trichodesmium
erythraeum (strain IMS101) GN=psaE PE=3 SV=1
Length = 69
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 24/27 (88%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
KRG+KV+ILR+ESYWY +G+V +VD+
Sbjct: 3 KRGSKVRILRKESYWYQDVGTVASVDK 29
>sp|Q2JXQ1|PSAE_SYNJA Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain JA-3-3Ab) GN=psaE PE=3 SV=1
Length = 73
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVD 108
+RGAKV++LR+ESYWY +G+V AVD
Sbjct: 4 QRGAKVRVLRKESYWYRDVGTVAAVD 29
>sp|P69404|PSAE_PORUM Photosystem I reaction center subunit IV OS=Porphyra umbilicalis
GN=psaE PE=3 SV=1
Length = 62
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 24/27 (88%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
+RG+KVKILR+ESYWY IG+V A+D+
Sbjct: 2 ERGSKVKILRKESYWYQEIGTVAAMDK 28
>sp|P69403|PSAE_PORPU Photosystem I reaction center subunit IV OS=Porphyra purpurea
GN=psaE PE=3 SV=1
Length = 62
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 24/27 (88%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
+RG+KVKILR+ESYWY IG+V A+D+
Sbjct: 2 ERGSKVKILRKESYWYQEIGTVAAMDK 28
>sp|Q7NFW6|PSAE_GLOVI Photosystem I reaction center subunit IV OS=Gloeobacter violaceus
(strain PCC 7421) GN=psaE PE=1 SV=1
Length = 65
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 24/27 (88%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
+RGAKV+ILR+ESYWY +G+V +VD+
Sbjct: 4 ERGAKVRILRKESYWYREVGTVASVDK 30
>sp|O78515|PSAE_GUITH Photosystem I reaction center subunit IV OS=Guillardia theta
GN=psaE PE=3 SV=1
Length = 64
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVD 108
KRG+KV+ILR+ESYWY +G+V VD
Sbjct: 3 KRGSKVRILRKESYWYQEVGTVATVD 28
>sp|A0T0F3|PSAE_PHATC Photosystem I reaction center subunit IV OS=Phaeodactylum
tricornutum (strain CCAP 1055/1) GN=psaE PE=3 SV=1
Length = 69
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQ 109
RG++V+ILR ESYW+N +G+V VDQ
Sbjct: 4 RGSEVRILREESYWFNEVGTVATVDQ 29
>sp|B7K1T0|PSAE_CYAP8 Photosystem I reaction center subunit IV OS=Cyanothece sp. (strain
PCC 8801) GN=psaE PE=3 SV=1
Length = 69
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFN 123
KRG KV+I R+ESYWY +G+V +VD+ + ++ V V FN
Sbjct: 3 KRGDKVRIKRKESYWYGDVGTVASVDKAGI--LYPVIVRFN 41
>sp|O19924|PSAE_CYACA Photosystem I reaction center subunit IV OS=Cyanidium caldarium
GN=psaE PE=3 SV=1
Length = 69
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
K+G++V+ILR ESYW+N IG+V VDQ
Sbjct: 3 KKGSQVRILRPESYWHNEIGTVATVDQ 29
>sp|P23077|PSAE_SYNP6 Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaE
PE=1 SV=3
Length = 75
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQ 109
RG KV+ILR ESYW+N +G+V +VDQ
Sbjct: 5 RGDKVRILRPESYWFNEVGTVASVDQ 30
>sp|Q31NL7|PSAE_SYNE7 Photosystem I reaction center subunit IV OS=Synechococcus elongatus
(strain PCC 7942) GN=psaE PE=3 SV=1
Length = 75
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQ 109
RG KV+ILR ESYW+N +G+V +VDQ
Sbjct: 5 RGDKVRILRPESYWFNEVGTVASVDQ 30
>sp|Q9WWP1|PSAE_NOSS8 Photosystem I reaction center subunit IV OS=Nostoc sp. (strain PCC
8009) GN=psaE PE=1 SV=1
Length = 70
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 23/27 (85%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
+RG+KV+ILR ESYW+ +G+V +VDQ
Sbjct: 3 QRGSKVRILRPESYWFQDVGTVASVDQ 29
>sp|P31090|PSAE_ANAVT Photosystem I reaction center subunit IV OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=psaE PE=1 SV=3
Length = 71
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 23/27 (85%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
+RG+KV+ILR ESYW+ +G+V +VDQ
Sbjct: 3 QRGSKVRILRPESYWFQDVGTVASVDQ 29
>sp|P58575|PSAE_NOSS1 Photosystem I reaction center subunit IV OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=psaE PE=3 SV=1
Length = 70
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 23/27 (85%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
+RG+KV+ILR ESYW+ +G+V +VDQ
Sbjct: 3 QRGSKVRILRPESYWFQDVGTVASVDQ 29
>sp|Q7V8Y4|PSAE_PROMM Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain MIT 9313) GN=psaE PE=3 SV=1
Length = 68
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQVRLFSIFLVYVTFNHF 125
+G KV+I R ESYW+N +G+V +VD + + + + N+F
Sbjct: 5 KGDKVRIRREESYWHNEVGTVASVDTTGKYGVLVRFEKTNYF 46
>sp|P23809|PSAE_FREDI Photosystem I reaction center subunit IV OS=Fremyella diplosiphon
GN=psaE PE=1 SV=1
Length = 66
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
+RG+KV+ILR ESYW+ +G+V ++DQ
Sbjct: 2 QRGSKVRILRPESYWFQDVGTVASIDQ 28
>sp|B2J5G1|PSAE_NOSP7 Photosystem I reaction center subunit IV OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=psaE PE=3 SV=1
Length = 71
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
+RG+KV+ILR ESYW+ +G+V ++DQ
Sbjct: 3 QRGSKVRILRPESYWFQDLGTVASIDQ 29
>sp|Q9ZFU3|PSAE_MASLA Photosystem I reaction center subunit IV OS=Mastigocladus laminosus
GN=psaE PE=3 SV=1
Length = 71
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQ 109
+RG+KV+ILR ESYW+ IG+V +++Q
Sbjct: 3 QRGSKVRILRPESYWFQDIGTVASIEQ 29
>sp|Q0ICP0|PSAE_SYNS3 Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain CC9311) GN=psaE PE=3 SV=1
Length = 69
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVD 108
RG KV+I R ESYWYN +G+V ++D
Sbjct: 5 RGDKVRIKRPESYWYNDVGTVASID 29
>sp|Q3AMB5|PSAE_SYNSC Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain CC9605) GN=psaE PE=3 SV=1
Length = 69
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVD 108
RGAKV+I R ESYW+N +G+V ++D
Sbjct: 5 RGAKVRIKRPESYWFNEVGTVASID 29
>sp|Q7U4V3|PSAE_SYNPX Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain WH8102) GN=psaE PE=3 SV=1
Length = 69
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVD 108
RGAKV+I R ESYW+N +G+V ++D
Sbjct: 5 RGAKVRIKRPESYWFNEVGTVASID 29
>sp|Q3AWF7|PSAE_SYNS9 Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain CC9902) GN=psaE PE=3 SV=1
Length = 69
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVD 108
RGAKV+I R ESYW+N +G+V +D
Sbjct: 5 RGAKVRIKRPESYWFNEVGTVATID 29
>sp|Q7VDK5|PSAE_PROMA Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=psaE PE=3 SV=1
Length = 69
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVD 108
RG KV++ R ESYWYN IG V +VD
Sbjct: 5 RGDKVRVKRPESYWYNEIGKVASVD 29
>sp|A9BDY6|PSAE_PROM4 Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain MIT 9211) GN=psaE PE=3 SV=1
Length = 69
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVD 108
RG KV++ R ESYWYN +G V +VD
Sbjct: 5 RGDKVRVKRPESYWYNEVGKVASVD 29
>sp|P12975|PSAE_SYNY3 Photosystem I reaction center subunit IV OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=psaE PE=1 SV=4
Length = 74
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQ 109
RG KV+I R ESYWY +G+V +V++
Sbjct: 5 RGDKVRIKRTESYWYGDVGTVASVEK 30
>sp|A5GR45|PSAE_SYNR3 Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain RCC307) GN=psaE PE=3 SV=1
Length = 69
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVD 108
RG KV+I R ESYW+N +G+V ++D
Sbjct: 5 RGDKVRIRRPESYWFNEVGTVASID 29
>sp|A2BUV9|PSAE_PROM5 Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain MIT 9515) GN=psaE PE=3 SV=1
Length = 69
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQ 109
RG V+I R+ESYWYN G V ++D+
Sbjct: 5 RGDFVRIKRKESYWYNDTGKVASIDK 30
>sp|A8G2Z0|PSAE_PROM2 Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain MIT 9215) GN=psaE PE=3 SV=1
Length = 69
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQ 109
RG V+I R ESYWYN IG V ++D+
Sbjct: 5 RGDFVRIKRPESYWYNEIGKVASIDK 30
>sp|Q91VM4|SPNS2_MOUSE Protein spinster homolog 2 OS=Mus musculus GN=Spns2 PE=2 SV=2
Length = 549
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 58 PAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKIL 91
P+ AA A+G +AP+PKP +G RGA IL
Sbjct: 75 PSTPGCAAAAKGPSAPQPKPASLGRGRGAAAAIL 108
>sp|A5GJ51|PSAE_SYNPW Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain WH7803) GN=psaE PE=3 SV=1
Length = 69
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVD 108
RG V+I R ESYWYN +G V ++D
Sbjct: 5 RGDMVRIKRPESYWYNEVGKVASID 29
>sp|Q7V2X3|PSAE_PROMP Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=psaE PE=3
SV=1
Length = 69
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVD 108
RG V++ R ESYWYN IG V +VD
Sbjct: 5 RGDLVRVKRPESYWYNEIGKVASVD 29
>sp|Q31CJ9|PSAE_PROM9 Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain MIT 9312) GN=psaE PE=3 SV=1
Length = 69
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVD 108
RG V++ R ESYWYN IG V +VD
Sbjct: 5 RGDLVRVKRPESYWYNEIGKVASVD 29
>sp|A2BPD2|PSAE_PROMS Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain AS9601) GN=psaE PE=3 SV=1
Length = 69
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVD 108
RG V++ R ESYWYN IG V +VD
Sbjct: 5 RGDLVRVKRPESYWYNEIGKVASVD 29
>sp|A3PB54|PSAE_PROM0 Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain MIT 9301) GN=psaE PE=3 SV=1
Length = 69
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVD 108
RG V++ R ESYWYN IG V +VD
Sbjct: 5 RGDLVRVKRPESYWYNEIGKVASVD 29
>sp|P20900|PSAE_THEVL Photosystem I reaction center subunit IV (Fragment)
OS=Thermosynechococcus vulcanus GN=psaE PE=1 SV=1
Length = 26
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 83 KRGAKVKILRRESYWYNGIGSV 104
+RG+KVKILR ESY YN +G+V
Sbjct: 3 QRGSKVKILRPESYVYNEVGTV 24
>sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens
GN=PDS5B PE=1 SV=1
Length = 1447
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 37 KNNSSNSFRLVVRASEEAAAPPAAA---TTAAPAEGEAAPKPKPPPIGPKRGAKV 88
+ + S R+ RA + A +P ++A T + P +G P P P PK+ +V
Sbjct: 1339 QKSKSKQHRVSRRAQQRAESPESSAIESTQSTPQKGRGRPSKTPSPSQPKKNVRV 1393
>sp|Q8IVW8|SPNS2_HUMAN Protein spinster homolog 2 OS=Homo sapiens GN=SPNS2 PE=1 SV=2
Length = 549
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 21/45 (46%)
Query: 47 VVRASEEAAAPPAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKIL 91
V RA P AA A+G A +PKP +G RGA IL
Sbjct: 64 VRRAPTGPPGTPGTPGCAATAKGPGAQQPKPASLGRGRGAAAAIL 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,361,141
Number of Sequences: 539616
Number of extensions: 1709045
Number of successful extensions: 20164
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 211
Number of HSP's that attempted gapping in prelim test: 18115
Number of HSP's gapped (non-prelim): 1913
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)