BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033138
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 32.7 bits (73), Expect = 0.059, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 64 WCGNKATINKTEVYGASCEDPSKSISWDGVHYTQAANQWVANHTLYGSLTDP 115
+ GN T+N T S DPSK + D VH T + +A++T Y L+ P
Sbjct: 269 FSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIADYT-YSLLSAP 319
>pdb|1KD0|A Chain A, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Apo-Structure.
pdb|1KD0|B Chain B, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Apo-Structure
Length = 413
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 3 VEFNRQLKERVIKLRTELPEAAITYVDVYAT 33
+E+ + L++R+IKLR A I ++DVY T
Sbjct: 212 LEYVKWLRDRIIKLRVREDYAPIFHIDVYGT 242
>pdb|3ZVI|A Chain A, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant L384a
pdb|3ZVI|B Chain B, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant L384a
Length = 438
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 3 VEFNRQLKERVIKLRTELPEAAITYVDVYAT 33
+E+ + L++R+IKLR A I ++DVY T
Sbjct: 212 LEYVKWLRDRIIKLRVREDYAPIFHIDVYGT 242
>pdb|3ZVH|A Chain A, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant Q73a
pdb|3ZVH|B Chain B, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant Q73a
Length = 438
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 3 VEFNRQLKERVIKLRTELPEAAITYVDVYAT 33
+E+ + L++R+IKLR A I ++DVY T
Sbjct: 212 LEYVKWLRDRIIKLRVREDYAPIFHIDVYGT 242
>pdb|1KCZ|A Chain A, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Mg-Complex.
pdb|1KCZ|B Chain B, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Mg-Complex
Length = 413
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 3 VEFNRQLKERVIKLRTELPEAAITYVDVYAT 33
+E+ + L++R+IKLR A I ++DVY T
Sbjct: 212 LEYVKWLRDRIIKLRVREDYAPIFHIDVYGT 242
>pdb|3H5K|A Chain A, Crystal Structure Of The Ribosome Inactivating Protein
Pdl1
pdb|3H5K|B Chain B, Crystal Structure Of The Ribosome Inactivating Protein
Pdl1
pdb|3LE7|A Chain A, Crystal Structure Of Pd-L1 From P. Dioica In Complex With
Adenine
pdb|3LE7|B Chain B, Crystal Structure Of Pd-L1 From P. Dioica In Complex With
Adenine
Length = 261
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 39 SNAKTLGYADPFKVCCGYHENYHHVWCGNKATINKTEVYGASCEDPSKSISWDGVHYT 96
+N +GY+DPF C YH ++ + + + T +S D +K I+++ ++ T
Sbjct: 69 NNLYVMGYSDPFNGNCRYHI-FNDITGTERTNVENTLCSSSSSRD-AKPINYNSLYST 124
>pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|1WW1|B Chain B, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|2E7Y|A Chain A, High Resolution Structure Of T. Maritima Trnase Z
pdb|2E7Y|B Chain B, High Resolution Structure Of T. Maritima Trnase Z
Length = 280
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1 MAVEFNRQLKERVIKLRTELPEAAITYVD 29
++ + RQLK + K R E+P+ I Y+D
Sbjct: 245 ISTRYIRQLKSVIKKYREEMPDVEILYMD 273
>pdb|2ZAI|A Chain A, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|B Chain B, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|C Chain C, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|D Chain D, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
Length = 497
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 6 NRQLKE--RVIKLRTELPEAAI-TYVDVYATKY 35
N QLKE +K+R ELPE I +Y D KY
Sbjct: 432 NIQLKEGENTVKVRAELPEGVISSYKDELQRKY 464
>pdb|4HBZ|A Chain A, The Structure Of Putative Phosphohistidine Phosphatase
Sixa From Nakamurella Multipartitia
Length = 186
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 78 GASCEDPSKSISWDGVHYTQAANQWVANH 106
G++ D + ++ DGV AA QW+ H
Sbjct: 31 GSAVRDHDRPLTPDGVRAATAAGQWLRGH 59
>pdb|2ZAG|A Chain A, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|B Chain B, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|C Chain C, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|D Chain D, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
Length = 497
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 6 NRQLKE--RVIKLRTELPEAAI-TYVDVYATKY 35
N QLKE +K+R ELPE I +Y D KY
Sbjct: 432 NIQLKEGENTVKVRAELPEGVISSYKDELQRKY 464
>pdb|1APA|A Chain A, X-Ray Structure Of A Pokeweed Antiviral Protein, Coded By
A New Genomic Clone, At 0.23 Nm Resolution. A Model
Structure Provides A Suitable Electrostatic Field For
Substrate Binding
Length = 266
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 39 SNAKTLGYADPFKVCCGYHENYHHVWCGNKATINKTEVYGASCEDPS----KSISWD 91
+N +GYAD + C Y H++ T + +V C +PS K+I++D
Sbjct: 74 NNLYVMGYADTYNGKCRY-----HIFKDISNTTERNDVMTTLCPNPSSRVGKNINYD 125
>pdb|4AWE|A Chain A, The Crystal Structure Of Chrysonilia Sitophila
Endo-Beta-D- 1,4-Mannanase
Length = 387
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 85 SKSISWDGVHYTQAANQWVANHTLYGSLTDPPIPITQ 121
SKSI W +NQW+ +H G + P+ + +
Sbjct: 273 SKSIEW--------SNQWIHDHAASGRAANKPVVLEE 301
>pdb|2XSP|A Chain A, Structure Of Cellobiohydrolase 1 (Cel7a) From
Heterobasidion Annosum
pdb|2YG1|A Chain A, Apo Structure Of Cellobiohydrolase 1 (Cel7a) From
Heterobasidion Annosum
pdb|2YG1|B Chain B, Apo Structure Of Cellobiohydrolase 1 (Cel7a) From
Heterobasidion Annosum
Length = 440
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 78 GASCEDPSKSI----SWDGVHYTQAANQWVANHTLYGSLTDPPIPITQAC 123
G SC S+S+ +W +H T +T SL P+ Q C
Sbjct: 22 GGSCTTESRSVVLDSNWRWLHTTSGTTNCYTGNTWDASLCPDPVTCAQNC 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,237,334
Number of Sequences: 62578
Number of extensions: 161398
Number of successful extensions: 339
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 17
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)