Query 033138
Match_columns 126
No_of_seqs 146 out of 1042
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 10:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03156 GDSL esterase/lipase; 100.0 1.1E-30 2.4E-35 202.9 9.9 102 1-110 244-345 (351)
2 cd01837 SGNH_plant_lipase_like 100.0 2.3E-30 4.9E-35 197.9 10.7 103 1-111 213-315 (315)
3 cd01847 Triacylglycerol_lipase 99.9 2.2E-27 4.8E-32 178.8 8.6 94 1-109 186-279 (281)
4 cd01846 fatty_acyltransferase_ 99.9 5.7E-27 1.2E-31 174.9 10.1 94 1-109 176-269 (270)
5 PRK15381 pathogenicity island 99.9 7.5E-26 1.6E-30 178.3 10.4 95 1-108 304-398 (408)
6 COG3240 Phospholipase/lecithin 99.9 4.3E-22 9.2E-27 153.5 8.7 94 2-110 239-332 (370)
7 PF00657 Lipase_GDSL: GDSL-lik 99.3 3.7E-12 7.9E-17 91.5 4.8 65 2-107 167-234 (234)
8 cd00229 SGNH_hydrolase SGNH_hy 97.7 3.4E-05 7.4E-10 52.0 3.5 99 3-109 87-186 (187)
9 cd01823 SEST_like SEST_like. A 97.7 0.00044 9.6E-09 51.1 9.2 32 3-34 127-158 (259)
10 cd01833 XynB_like SGNH_hydrola 97.7 8.1E-05 1.8E-09 50.9 4.8 95 3-110 60-156 (157)
11 cd01834 SGNH_hydrolase_like_2 97.6 0.0003 6.4E-09 49.1 6.4 25 86-110 167-191 (191)
12 cd01828 sialate_O-acetylestera 97.5 8.7E-05 1.9E-09 51.4 2.9 95 3-109 68-166 (169)
13 cd01844 SGNH_hydrolase_like_6 97.4 0.0014 3.1E-08 45.8 8.4 27 4-30 75-101 (177)
14 cd04502 SGNH_hydrolase_like_7 97.4 0.00025 5.4E-09 49.3 4.3 28 3-30 70-97 (171)
15 cd04506 SGNH_hydrolase_YpmR_li 97.3 0.0017 3.6E-08 46.3 7.4 29 4-32 103-131 (204)
16 cd01827 sialate_O-acetylestera 97.2 0.0046 9.9E-08 43.3 9.1 29 3-31 89-117 (188)
17 cd01831 Endoglucanase_E_like E 97.1 0.0056 1.2E-07 42.4 8.8 27 3-29 77-103 (169)
18 cd01832 SGNH_hydrolase_like_1 97.1 0.0043 9.3E-08 43.2 8.1 25 86-110 161-185 (185)
19 cd01820 PAF_acetylesterase_lik 97.0 0.0035 7.5E-08 45.2 7.3 29 3-31 109-137 (214)
20 cd01841 NnaC_like NnaC (CMP-Ne 97.0 0.00065 1.4E-08 47.1 3.0 23 87-109 150-172 (174)
21 cd01836 FeeA_FeeB_like SGNH_hy 97.0 0.0041 8.9E-08 43.7 6.9 28 3-30 87-114 (191)
22 cd01825 SGNH_hydrolase_peri1 S 96.9 0.0033 7.1E-08 43.9 6.2 31 3-33 77-107 (189)
23 cd01826 acyloxyacyl_hydrolase_ 96.7 0.0071 1.5E-07 46.6 6.6 30 3-32 149-179 (305)
24 cd01830 XynE_like SGNH_hydrola 96.5 0.0018 3.9E-08 46.4 2.0 24 85-108 178-201 (204)
25 cd01840 SGNH_hydrolase_yrhL_li 96.4 0.0023 5E-08 43.8 2.1 24 86-109 125-148 (150)
26 PRK10528 multifunctional acyl- 96.3 0.0029 6.2E-08 45.1 2.2 25 86-110 158-182 (191)
27 cd01822 Lysophospholipase_L1_l 96.1 0.004 8.7E-08 43.0 2.1 24 86-109 151-174 (177)
28 cd04501 SGNH_hydrolase_like_4 96.0 0.0058 1.3E-07 42.6 2.7 26 85-110 157-182 (183)
29 cd01839 SGNH_arylesterase_like 96.0 0.0049 1.1E-07 44.1 2.3 22 88-109 182-203 (208)
30 cd01835 SGNH_hydrolase_like_3 96.0 0.0049 1.1E-07 43.4 2.2 23 87-109 169-191 (193)
31 cd01838 Isoamyl_acetate_hydrol 95.9 0.0049 1.1E-07 43.1 2.0 29 3-31 88-116 (199)
32 cd01821 Rhamnogalacturan_acety 95.9 0.0066 1.4E-07 43.1 2.6 23 87-109 174-196 (198)
33 cd01824 Phospholipase_B_like P 95.9 0.0056 1.2E-07 46.8 2.3 32 3-34 145-176 (288)
34 cd01829 SGNH_hydrolase_peri2 S 95.7 0.0063 1.4E-07 43.0 1.9 24 86-109 173-196 (200)
35 PF14606 Lipase_GDSL_3: GDSL-l 94.7 0.065 1.4E-06 38.3 4.5 30 3-32 74-103 (178)
36 PF13472 Lipase_GDSL_2: GDSL-l 94.7 0.021 4.6E-07 38.5 1.9 19 85-103 161-179 (179)
37 COG2755 TesA Lysophospholipase 94.0 0.046 9.9E-07 39.1 2.5 25 86-110 183-207 (216)
38 cd01842 SGNH_hydrolase_like_5 84.3 0.89 1.9E-05 32.7 2.3 25 85-109 156-180 (183)
39 KOG3035 Isoamyl acetate-hydrol 82.3 0.43 9.3E-06 35.4 0.1 102 3-109 96-206 (245)
40 PF04914 DltD_C: DltD C-termin 67.8 5.3 0.00011 27.1 2.4 73 8-108 37-124 (130)
41 COG4531 ZnuA ABC-type Zn2+ tra 62.4 20 0.00043 27.7 4.7 41 3-49 187-231 (318)
42 PF06812 ImpA-rel_N: ImpA-rela 53.0 5.6 0.00012 23.1 0.4 9 88-96 52-60 (62)
43 KOG3670 Phospholipase [Lipid t 53.0 11 0.00024 30.3 2.1 30 83-112 322-351 (397)
44 KOG0907 Thioredoxin [Posttrans 46.1 38 0.00083 21.9 3.6 25 8-32 38-62 (106)
45 PF12905 Glyco_hydro_101: Endo 42.3 36 0.00079 27.7 3.5 25 8-32 159-183 (425)
46 TIGR02089 TTC tartrate dehydro 41.7 45 0.00097 26.4 4.0 38 8-45 199-236 (352)
47 COG1182 AcpD Acyl carrier prot 41.0 48 0.001 24.3 3.7 27 6-32 19-45 (202)
48 cd02957 Phd_like Phosducin (Ph 39.9 85 0.0018 19.9 4.6 37 7-48 40-76 (113)
49 PF00180 Iso_dh: Isocitrate/is 39.6 58 0.0012 25.7 4.3 38 8-45 195-233 (348)
50 cd02989 Phd_like_TxnDC9 Phosdu 39.5 56 0.0012 21.0 3.7 37 8-48 39-75 (113)
51 PRK03437 3-isopropylmalate deh 39.0 39 0.00085 26.7 3.3 38 8-45 196-233 (344)
52 smart00340 HALZ homeobox assoc 38.2 36 0.00078 18.6 2.1 15 5-19 20-34 (44)
53 PRK13717 conjugal transfer pro 37.6 47 0.001 22.5 3.0 20 1-20 76-95 (128)
54 PLN00123 isocitrate dehydrogen 37.5 53 0.0012 26.2 3.8 38 8-45 204-241 (360)
55 PRK08194 tartrate dehydrogenas 36.7 59 0.0013 25.8 3.9 38 8-45 196-233 (352)
56 PRK00772 3-isopropylmalate deh 36.5 64 0.0014 25.7 4.1 38 8-45 200-237 (358)
57 cd01824 Phospholipase_B_like P 35.7 85 0.0018 23.9 4.6 25 86-110 258-282 (288)
58 TIGR00175 mito_nad_idh isocitr 35.4 57 0.0012 25.6 3.7 39 7-45 180-218 (333)
59 PRK08997 isocitrate dehydrogen 35.2 70 0.0015 25.2 4.1 38 8-45 183-220 (334)
60 TIGR00169 leuB 3-isopropylmala 32.9 78 0.0017 25.1 4.1 38 8-45 197-234 (349)
61 PF02608 Bmp: Basic membrane p 32.3 1.7E+02 0.0037 22.2 5.8 42 4-45 16-61 (306)
62 PLN00118 isocitrate dehydrogen 31.9 71 0.0015 25.6 3.7 39 7-45 219-257 (372)
63 PF12872 OST-HTH: OST-HTH/LOTU 31.5 50 0.0011 19.2 2.2 41 9-49 6-50 (74)
64 PF00308 Bac_DnaA: Bacterial d 30.1 1.4E+02 0.0029 21.6 4.8 34 8-41 50-83 (219)
65 PRK14025 multifunctional 3-iso 29.7 84 0.0018 24.7 3.7 39 7-45 179-217 (330)
66 PRK13555 azoreductase; Provisi 29.3 96 0.0021 22.4 3.8 30 4-33 17-47 (208)
67 PTZ00195 60S ribosomal protein 29.0 51 0.0011 24.0 2.3 26 98-123 43-68 (198)
68 cd02973 TRX_GRX_like Thioredox 27.6 1.2E+02 0.0026 16.9 3.7 25 8-32 16-40 (67)
69 cd02986 DLP Dim1 family, Dim1- 27.4 1.2E+02 0.0025 20.1 3.6 26 8-33 31-57 (114)
70 PF07315 DUF1462: Protein of u 26.6 62 0.0013 20.7 2.1 31 85-115 38-69 (93)
71 PF02384 N6_Mtase: N-6 DNA Met 26.6 18 0.00039 27.4 -0.4 35 22-59 26-60 (311)
72 TIGR02744 TrbI_Ftype type-F co 26.5 94 0.002 20.6 3.0 19 2-20 64-82 (112)
73 TIGR00125 cyt_tran_rel cytidyl 26.3 70 0.0015 17.9 2.2 17 90-109 8-24 (66)
74 PF09822 ABC_transp_aux: ABC-t 26.2 2E+02 0.0043 21.3 5.2 46 3-48 42-88 (271)
75 cd02987 Phd_like_Phd Phosducin 26.0 1.2E+02 0.0026 21.2 3.7 27 7-33 99-125 (175)
76 cd02170 cytidylyltransferase c 25.8 63 0.0014 21.3 2.2 18 89-109 9-26 (136)
77 cd02171 G3P_Cytidylyltransfera 25.6 64 0.0014 21.0 2.2 18 89-109 9-26 (129)
78 PF04690 YABBY: YABBY protein; 25.3 79 0.0017 22.5 2.7 35 3-42 127-161 (170)
79 PLN02329 3-isopropylmalate deh 25.2 59 0.0013 26.4 2.2 37 9-45 246-282 (409)
80 cd08445 PBP2_BenM_CatM_CatR Th 25.1 1.2E+02 0.0027 20.1 3.6 41 6-46 13-55 (203)
81 cd08448 PBP2_LTTR_aromatics_li 25.0 1.3E+02 0.0028 19.5 3.7 42 6-47 12-55 (197)
82 PF11965 DUF3479: Domain of un 24.6 1.4E+02 0.003 21.0 3.8 31 3-33 10-41 (164)
83 PTZ00469 60S ribosomal subunit 24.2 69 0.0015 23.2 2.2 26 98-123 43-68 (187)
84 TIGR03363 VI_chp_8 type VI sec 24.0 28 0.0006 27.4 0.2 9 88-96 104-112 (353)
85 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 23.8 44 0.00095 18.8 0.9 16 30-45 33-48 (50)
86 cd03026 AhpF_NTD_C TRX-GRX-lik 23.7 1.6E+02 0.0035 18.1 3.6 37 8-48 29-65 (89)
87 PF11987 IF-2: Translation-ini 23.4 25 0.00055 22.9 -0.1 32 5-37 74-106 (108)
88 TIGR02088 LEU3_arch isopropylm 23.0 1.3E+02 0.0029 23.5 3.7 37 8-45 176-212 (322)
89 cd02988 Phd_like_VIAF Phosduci 22.9 1.4E+02 0.0031 21.2 3.7 36 7-49 118-153 (192)
90 PF12953 DUF3842: Domain of un 22.7 2.2E+02 0.0048 19.4 4.3 38 10-47 14-53 (131)
91 PF09677 TrbI_Ftype: Type-F co 22.7 1.6E+02 0.0035 19.3 3.6 19 2-20 63-81 (111)
92 PF03421 YopJ: YopJ Serine/Thr 22.4 1.7E+02 0.0037 20.7 3.9 33 8-40 32-64 (177)
93 TIGR02193 heptsyl_trn_I lipopo 22.2 1.7E+02 0.0037 22.0 4.2 30 10-40 17-46 (319)
94 PRK13556 azoreductase; Provisi 22.0 1.6E+02 0.0034 20.9 3.8 27 6-32 19-46 (208)
95 cd08467 PBP2_SyrM The C-termin 21.9 1.5E+02 0.0033 19.7 3.6 42 6-47 12-55 (200)
96 cd02954 DIM1 Dim1 family; Dim1 21.8 1.8E+02 0.0039 19.1 3.7 38 7-48 30-68 (114)
97 PF06574 FAD_syn: FAD syntheta 21.5 77 0.0017 21.9 2.0 17 89-108 13-29 (157)
98 KOG0700 Protein phosphatase 2C 21.5 72 0.0016 25.8 2.0 29 1-29 242-271 (390)
99 PF03466 LysR_substrate: LysR 21.0 1.6E+02 0.0035 19.4 3.6 42 6-47 18-61 (209)
100 cd08436 PBP2_LTTR_like_3 The C 21.0 2E+02 0.0044 18.5 4.0 41 6-46 12-54 (194)
101 PRK09222 isocitrate dehydrogen 20.9 1.5E+02 0.0032 24.7 3.7 38 8-45 185-222 (482)
102 cd08440 PBP2_LTTR_like_4 TThe 20.6 2.5E+02 0.0053 18.0 4.4 41 6-46 12-54 (197)
103 COG2845 Uncharacterized protei 20.6 74 0.0016 25.2 1.9 24 86-109 292-315 (354)
104 COG1727 RPL18A Ribosomal prote 20.6 80 0.0017 21.2 1.8 25 98-122 30-54 (122)
105 PTZ00062 glutaredoxin; Provisi 20.6 1.6E+02 0.0034 21.4 3.5 24 8-31 34-57 (204)
106 cd08485 PBP2_ClcR The C-termin 20.4 1.8E+02 0.0039 19.3 3.7 42 6-47 13-56 (198)
107 cd08431 PBP2_HupR The C-termin 20.4 1.6E+02 0.0035 19.2 3.5 40 7-46 13-54 (195)
No 1
>PLN03156 GDSL esterase/lipase; Provisional
Probab=99.97 E-value=1.1e-30 Score=202.92 Aligned_cols=102 Identities=29% Similarity=0.517 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhCccCCCccccCcccccCccccCCccccCCccccccC
Q 033138 1 MAVEFNRQLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLGYADPFKVCCGYHENYHHVWCGNKATINKTEVYGAS 80 (126)
Q Consensus 1 ~s~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yGf~~~~~~Ccg~~~~~~~~~C~~~~~~~g~~~~~~~ 80 (126)
++..||++|++++++|++++|+++|+++|+|+++.++++||++|||++++++|||.+.++....|++. ....
T Consensus 244 ~~~~~N~~L~~~l~~L~~~~pg~~i~~~D~y~~~~~ii~nP~~yGf~~~~~aCCg~g~~~~~~~C~~~--------~~~~ 315 (351)
T PLN03156 244 VALEFNGKLEKLVTKLNKELPGIKLVFSNPYDIFMQIIRNPSAYGFEVTSVACCATGMFEMGYLCNRN--------NPFT 315 (351)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEEEehHHHHHHHHhCccccCcccCCccccCCCCCCCccccCCC--------CCCc
Confidence 36899999999999999999999999999999999999999999999999999998777777789863 2358
Q ss_pred CCCCCCceecCCCChhHHHHHHHHHHHhcC
Q 033138 81 CEDPSKSISWDGVHYTQAANQWVANHTLYG 110 (126)
Q Consensus 81 C~~~~~y~fwD~~HPT~~~h~~iA~~~~~~ 110 (126)
|++|++|+|||++|||+++|++||+.++++
T Consensus 316 C~~p~~yvfWD~~HPTe~a~~~iA~~~~~~ 345 (351)
T PLN03156 316 CSDADKYVFWDSFHPTEKTNQIIANHVVKT 345 (351)
T ss_pred cCCccceEEecCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876
No 2
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.97 E-value=2.3e-30 Score=197.90 Aligned_cols=103 Identities=39% Similarity=0.688 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhCccCCCccccCcccccCccccCCccccCCccccccC
Q 033138 1 MAVEFNRQLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLGYADPFKVCCGYHENYHHVWCGNKATINKTEVYGAS 80 (126)
Q Consensus 1 ~s~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yGf~~~~~~Ccg~~~~~~~~~C~~~~~~~g~~~~~~~ 80 (126)
++..||++|+++|++|++++|+++|+++|+|+++.++++||++|||+++.++||+.+..+....|+.. ...+
T Consensus 213 ~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~y~~~~~i~~np~~yGf~~~~~aCc~~g~~~~~~~c~~~--------~~~~ 284 (315)
T cd01837 213 LARLFNAKLKKLLAELRRELPGAKFVYADIYNALLDLIQNPAKYGFENTLKACCGTGGPEGGLLCNPC--------GSTV 284 (315)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEehhHHHHHHHhChhhcCCcCCCcCccCCCCCCcccccCCC--------CCCc
Confidence 36899999999999999999999999999999999999999999999999999997665556677652 2468
Q ss_pred CCCCCCceecCCCChhHHHHHHHHHHHhcCC
Q 033138 81 CEDPSKSISWDGVHYTQAANQWVANHTLYGS 111 (126)
Q Consensus 81 C~~~~~y~fwD~~HPT~~~h~~iA~~~~~~~ 111 (126)
|++|++|+|||++|||+++|++||+.+++|.
T Consensus 285 C~~p~~y~fwD~~HpT~~~~~~ia~~~~~g~ 315 (315)
T cd01837 285 CPDPSKYVFWDGVHPTEAANRIIADALLSGP 315 (315)
T ss_pred CCCccceEEeCCCChHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999873
No 3
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=99.94 E-value=2.2e-27 Score=178.82 Aligned_cols=94 Identities=21% Similarity=0.301 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhCccCCCccccCcccccCccccCCccccCCccccccC
Q 033138 1 MAVEFNRQLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLGYADPFKVCCGYHENYHHVWCGNKATINKTEVYGAS 80 (126)
Q Consensus 1 ~s~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yGf~~~~~~Ccg~~~~~~~~~C~~~~~~~g~~~~~~~ 80 (126)
++..||++|+++|++|+.+ +|+++|+|+++.++++||++|||++++++||+.+... .|+.. ....
T Consensus 186 ~~~~~N~~L~~~l~~l~~~----~i~~~D~~~~~~~i~~nP~~yGf~~~~~~CC~~~~~~---~~~~~--------~~~~ 250 (281)
T cd01847 186 LSQTYNQTLQSGLNQLGAN----NIIYVDTATLLKEVVANPAAYGFTNTTTPACTSTSAA---GSGAA--------TLVT 250 (281)
T ss_pred HHHHHHHHHHHHHHhccCC----eEEEEEHHHHHHHHHhChHhcCccCCCccccCCCCcc---ccccc--------cccC
Confidence 4689999999999998754 8999999999999999999999999999999864322 25432 1357
Q ss_pred CCCCCCceecCCCChhHHHHHHHHHHHhc
Q 033138 81 CEDPSKSISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 81 C~~~~~y~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
|++|++|+|||++||||++|++||+.+++
T Consensus 251 c~~~~~y~fwD~~HpTe~~~~~ia~~~~~ 279 (281)
T cd01847 251 AAAQSTYLFADDVHPTPAGHKLIAQYALS 279 (281)
T ss_pred CCCccceeeccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 4
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=99.94 E-value=5.7e-27 Score=174.94 Aligned_cols=94 Identities=24% Similarity=0.463 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhCccCCCccccCcccccCccccCCccccCCccccccC
Q 033138 1 MAVEFNRQLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLGYADPFKVCCGYHENYHHVWCGNKATINKTEVYGAS 80 (126)
Q Consensus 1 ~s~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yGf~~~~~~Ccg~~~~~~~~~C~~~~~~~g~~~~~~~ 80 (126)
+++.||++|++++++|++++|+++|+++|+|+++.+++++|++|||+++..+||+... |.. ....
T Consensus 176 ~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~~~~~p~~yGf~~~~~~C~~~~~------~~~---------~~~~ 240 (270)
T cd01846 176 LTAAYNAKLAEKLAELKAQHPGVNILLFDTNALFNDILDNPAAYGFTNVTDPCLDYVY------SYS---------PREA 240 (270)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHhCHHhcCCCcCcchhcCCCc------ccc---------ccCC
Confidence 3679999999999999999999999999999999999999999999999999998521 543 2578
Q ss_pred CCCCCCceecCCCChhHHHHHHHHHHHhc
Q 033138 81 CEDPSKSISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 81 C~~~~~y~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
|.+|++|+|||++|||+++|++||+.+++
T Consensus 241 c~~~~~y~fwD~~HpT~~~~~~iA~~~~~ 269 (270)
T cd01846 241 CANPDKYLFWDEVHPTTAVHQLIAEEVAA 269 (270)
T ss_pred CCCccceEEecCCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999875
No 5
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=99.93 E-value=7.5e-26 Score=178.34 Aligned_cols=95 Identities=19% Similarity=0.131 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhCccCCCccccCcccccCccccCCccccCCccccccC
Q 033138 1 MAVEFNRQLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLGYADPFKVCCGYHENYHHVWCGNKATINKTEVYGAS 80 (126)
Q Consensus 1 ~s~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yGf~~~~~~Ccg~~~~~~~~~C~~~~~~~g~~~~~~~ 80 (126)
++..||++|+++|++|++++|+++|+++|+|+++.++++||++|||++++. ||+.|..+....|.+. ..+
T Consensus 304 ~a~~fN~~L~~~L~~L~~~~pg~~ivy~D~y~~~~~ii~nP~~yGF~~~~~-cCg~G~~~~~~~C~p~---------~~~ 373 (408)
T PRK15381 304 ESIAHNALLKTNVEELKEKYPQHKICYYETADAFKVIMEAASNIGYDTENP-YTHHGYVHVPGAKDPQ---------LDI 373 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEEEhHHHHHHHHhCHHhcCCCcccc-ccCCCccCCccccCcc---------cCC
Confidence 367899999999999999999999999999999999999999999999876 9998765555678663 457
Q ss_pred CCCCCCceecCCCChhHHHHHHHHHHHh
Q 033138 81 CEDPSKSISWDGVHYTQAANQWVANHTL 108 (126)
Q Consensus 81 C~~~~~y~fwD~~HPT~~~h~~iA~~~~ 108 (126)
|. +|+|||.+|||+++|++||+++-
T Consensus 374 C~---~YvFWD~vHPTe~ah~iiA~~~~ 398 (408)
T PRK15381 374 CP---QYVFNDLVHPTQEVHHCFAIMLE 398 (408)
T ss_pred CC---ceEecCCCCChHHHHHHHHHHHH
Confidence 84 99999999999999999999863
No 6
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=99.87 E-value=4.3e-22 Score=153.48 Aligned_cols=94 Identities=26% Similarity=0.395 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhCccCCCccccCcccccCccccCCccccCCccccccCC
Q 033138 2 AVEFNRQLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLGYADPFKVCCGYHENYHHVWCGNKATINKTEVYGASC 81 (126)
Q Consensus 2 s~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yGf~~~~~~Ccg~~~~~~~~~C~~~~~~~g~~~~~~~C 81 (126)
+..||..|++.|++++ .+|+.+|++.+|+++|.+|++|||+|++..||.....++ .|++. ....|
T Consensus 239 t~~~Na~L~~~L~~~g-----~nIi~iD~~~llk~im~nPa~fGlant~~~~c~~~~~~~--~~~a~--------~p~~~ 303 (370)
T COG3240 239 TIAFNASLTSQLEQLG-----GNIIRIDTYTLLKEIMTNPAEFGLANTTAPACDATVSNP--ACSAS--------LPALC 303 (370)
T ss_pred HHHHHHHHHHHHHHhc-----CcEEEeEhHHHHHHHHhCHHhcCcccCCCcccCcccCCc--ccccc--------ccccc
Confidence 5689999999999885 799999999999999999999999999999997654333 56553 23456
Q ss_pred CCCCCceecCCCChhHHHHHHHHHHHhcC
Q 033138 82 EDPSKSISWDGVHYTQAANQWVANHTLYG 110 (126)
Q Consensus 82 ~~~~~y~fwD~~HPT~~~h~~iA~~~~~~ 110 (126)
..|++|+|||++|||+++|++||++++.-
T Consensus 304 ~~~~~ylFaD~vHPTt~~H~liAeyila~ 332 (370)
T COG3240 304 AAPQKYLFADSVHPTTAVHHLIAEYILAR 332 (370)
T ss_pred CCccceeeecccCCchHHHHHHHHHHHHH
Confidence 67889999999999999999999998754
No 7
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=99.29 E-value=3.7e-12 Score=91.52 Aligned_cols=65 Identities=32% Similarity=0.614 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CcEEEEEeccHHHHHH--HHhhhhhCccCCCccccCcccccCccccCCccccCCccccc
Q 033138 2 AVEFNRQLKERVIKLRTELP-EAAITYVDVYATKYEL--ISNAKTLGYADPFKVCCGYHENYHHVWCGNKATINKTEVYG 78 (126)
Q Consensus 2 s~~~N~~L~~~l~~l~~~~~-~~~i~~~D~~~~~~~i--~~nP~~yGf~~~~~~Ccg~~~~~~~~~C~~~~~~~g~~~~~ 78 (126)
+..||..|++.+.+|+++++ +.++.++|+++.+.+. ..+|..
T Consensus 167 ~~~~n~~l~~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~~----------------------------------- 211 (234)
T PF00657_consen 167 VAAFNSALREVAAQLRKDYPKGANVPYFDIYSIFSDMYGIQNPEN----------------------------------- 211 (234)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHCTEEEEEHHHHHHHHHHHHHGGH-----------------------------------
T ss_pred HHHHHHHHHHHhhhcccccccCCceEEEEHHHHHHHhhhccCccc-----------------------------------
Confidence 57899999999999988776 8899999999999998 666655
Q ss_pred cCCCCCCCceecCCCChhHHHHHHHHHHH
Q 033138 79 ASCEDPSKSISWDGVHYTQAANQWVANHT 107 (126)
Q Consensus 79 ~~C~~~~~y~fwD~~HPT~~~h~~iA~~~ 107 (126)
++|+|||++|||+++|++||++|
T Consensus 212 ------~~~~~~D~~Hpt~~g~~~iA~~i 234 (234)
T PF00657_consen 212 ------DKYMFWDGVHPTEKGHKIIAEYI 234 (234)
T ss_dssp ------HHCBBSSSSSB-HHHHHHHHHHH
T ss_pred ------ceeccCCCcCCCHHHHHHHHcCC
Confidence 35899999999999999999975
No 8
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=97.73 E-value=3.4e-05 Score=52.02 Aligned_cols=99 Identities=17% Similarity=0.115 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhh-hCccCCCccccCcccccCccccCCccccCCccccccCC
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDVYATKYELISNAKT-LGYADPFKVCCGYHENYHHVWCGNKATINKTEVYGASC 81 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~-yGf~~~~~~Ccg~~~~~~~~~C~~~~~~~g~~~~~~~C 81 (126)
..+...+++.++.+++..++++++++.........-..+.. -.+......++............+. ....-
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--------~~~~~ 158 (187)
T cd00229 87 DEFKANLEELLDALRERAPGAKVILITPPPPPPREGLLGRALPRYNEAIKAVAAENPAPSGVDLVDL--------AALLG 158 (187)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCcceEEEEh--------hhhhC
Confidence 46778899999999988899999999887654321000000 0011111111110000000000000 00011
Q ss_pred CCCCCceecCCCChhHHHHHHHHHHHhc
Q 033138 82 EDPSKSISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 82 ~~~~~y~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
..+..+++||++|||++||+++|+.+++
T Consensus 159 ~~~~~~~~~Dg~H~~~~G~~~~a~~i~~ 186 (187)
T cd00229 159 DEDKSLYSPDGIHPNPAGHKLIAEALAS 186 (187)
T ss_pred CCccccccCCCCCCchhhHHHHHHHHhc
Confidence 1157889999999999999999999864
No 9
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=97.69 E-value=0.00044 Score=51.06 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeccHHH
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDVYATK 34 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~ 34 (126)
..|-+.|+.+|+++++..|+++|+++..+.++
T Consensus 127 ~~~~~~l~~~l~~i~~~~p~a~I~~~gyp~~~ 158 (259)
T cd01823 127 DEVGARLKAVLDRIRERAPNARVVVVGYPRLF 158 (259)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEecccccc
Confidence 35777899999999998999999888865544
No 10
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.68 E-value=8.1e-05 Score=50.88 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhCccCCCccccCcccc--cCccccCCccccCCccccccC
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLGYADPFKVCCGYHEN--YHHVWCGNKATINKTEVYGAS 80 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yGf~~~~~~Ccg~~~~--~~~~~C~~~~~~~g~~~~~~~ 80 (126)
..|=..++..++.+++..|++.+++.-.......- .++..-.+......-|..... .....-.. ...
T Consensus 60 ~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~-~~~~~~~~n~~l~~~~~~~~~~~~~v~~vd~----------~~~ 128 (157)
T cd01833 60 DTAPDRLRALIDQMRAANPDVKIIVATLIPTTDAS-GNARIAEYNAAIPGVVADLRTAGSPVVLVDM----------STG 128 (157)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc-hhHHHHHHHHHHHHHHHHHhcCCCCEEEEec----------CCC
Confidence 45668899999999999999998887554322211 011111111111100100000 00000000 011
Q ss_pred CCCCCCceecCCCChhHHHHHHHHHHHhcC
Q 033138 81 CEDPSKSISWDGVHYTQAANQWVANHTLYG 110 (126)
Q Consensus 81 C~~~~~y~fwD~~HPT~~~h~~iA~~~~~~ 110 (126)
-.. .++.+|++||+++||+.||+.++++
T Consensus 129 ~~~--~~~~~Dg~Hpn~~Gy~~~a~~~~~~ 156 (157)
T cd01833 129 YTT--ADDLYDGLHPNDQGYKKMADAWYEA 156 (157)
T ss_pred CCC--cccccCCCCCchHHHHHHHHHHHhh
Confidence 111 5688999999999999999998764
No 11
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.56 E-value=0.0003 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.6
Q ss_pred CceecCCCChhHHHHHHHHHHHhcC
Q 033138 86 KSISWDGVHYTQAANQWVANHTLYG 110 (126)
Q Consensus 86 ~y~fwD~~HPT~~~h~~iA~~~~~~ 110 (126)
.++++|++||+++||++||+.+.++
T Consensus 167 ~~~~~D~~Hpn~~G~~~~a~~~~~~ 191 (191)
T cd01834 167 AVLTVDGVHPNEAGHRALARLWLEA 191 (191)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHhC
Confidence 3467899999999999999998764
No 12
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.49 E-value=8.7e-05 Score=51.40 Aligned_cols=95 Identities=12% Similarity=0.032 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHH-hhhhhCccCCCccccCcccccCccccCCccccCCccccccCC
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDVYATKYELIS-NAKTLGYADPFKVCCGYHENYHHVWCGNKATINKTEVYGASC 81 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~-nP~~yGf~~~~~~Ccg~~~~~~~~~C~~~~~~~g~~~~~~~C 81 (126)
..|-+.|+++++.+++..|+.+++++........... +...--+.+..+..|... + ....... ....
T Consensus 68 ~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~--~-~~~id~~---------~~~~ 135 (169)
T cd01828 68 EDIVANYRTILEKLRKHFPNIKIVVQSILPVGELKSIPNEQIEELNRQLAQLAQQE--G-VTFLDLW---------AVFT 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCccCcCCHHHHHHHHHHHHHHHHHC--C-CEEEech---------hhhc
Confidence 4677889999999999899999999877544200000 000000111111111100 0 0000000 0000
Q ss_pred -C--CCCCceecCCCChhHHHHHHHHHHHhc
Q 033138 82 -E--DPSKSISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 82 -~--~~~~y~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
. +...++..|++||+++||+++|+.+..
T Consensus 136 ~~~~~~~~~~~~DgiHpn~~G~~~~a~~i~~ 166 (169)
T cd01828 136 NADGDLKNEFTTDGLHLNAKGYAVWAAALQP 166 (169)
T ss_pred CCCCCcchhhccCccccCHHHHHHHHHHHHH
Confidence 0 234678899999999999999999864
No 13
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.43 E-value=0.0014 Score=45.82 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEec
Q 033138 4 EFNRQLKERVIKLRTELPEAAITYVDV 30 (126)
Q Consensus 4 ~~N~~L~~~l~~l~~~~~~~~i~~~D~ 30 (126)
.|-+.|+++++.+++..|++.|++...
T Consensus 75 ~~~~~~~~~i~~i~~~~p~~~iil~~~ 101 (177)
T cd01844 75 MVRERLGPLVKGLRETHPDTPILLVSP 101 (177)
T ss_pred HHHHHHHHHHHHHHHHCcCCCEEEEec
Confidence 466889999999999999998888764
No 14
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=97.41 E-value=0.00025 Score=49.25 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEec
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDV 30 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~ 30 (126)
+.|-+.++++++.+++..|++.+++...
T Consensus 70 ~~~~~~~~~lv~~i~~~~~~~~iil~~~ 97 (171)
T cd04502 70 EEVLRDFRELVNRIRAKLPDTPIAIISI 97 (171)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcEEEEEe
Confidence 4577889999999999999998888764
No 15
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=97.27 E-value=0.0017 Score=46.26 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEeccH
Q 033138 4 EFNRQLKERVIKLRTELPEAAITYVDVYA 32 (126)
Q Consensus 4 ~~N~~L~~~l~~l~~~~~~~~i~~~D~~~ 32 (126)
.|=+.|+++++.++++.|+++|+++..+.
T Consensus 103 ~~~~~l~~~i~~ir~~~p~~~Ivv~~~~~ 131 (204)
T cd04506 103 TYQNNLKKIFKEIRKLNPDAPIFLVGLYN 131 (204)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEEecCC
Confidence 46678999999999999999998887653
No 16
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.21 E-value=0.0046 Score=43.27 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEecc
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDVY 31 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~~ 31 (126)
..|-+.|+++++.+++..|+.++++.-..
T Consensus 89 ~~~~~~l~~li~~i~~~~~~~~iil~t~~ 117 (188)
T cd01827 89 DDFKKDYETMIDSFQALPSKPKIYICYPI 117 (188)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 45778899999999988899888877553
No 17
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=97.14 E-value=0.0056 Score=42.44 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEe
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVD 29 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D 29 (126)
..|=..+++++++++++.|++.|++..
T Consensus 77 ~~~~~~~~~li~~i~~~~p~~~i~~~~ 103 (169)
T cd01831 77 EDFTNAYVEFIEELRKRYPDAPIVLML 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 345568889999999999999887765
No 18
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=97.12 E-value=0.0043 Score=43.24 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.1
Q ss_pred CceecCCCChhHHHHHHHHHHHhcC
Q 033138 86 KSISWDGVHYTQAANQWVANHTLYG 110 (126)
Q Consensus 86 ~y~fwD~~HPT~~~h~~iA~~~~~~ 110 (126)
.++.-|++||+++||++||+.++++
T Consensus 161 ~~~~~DgiHpn~~G~~~~A~~i~~~ 185 (185)
T cd01832 161 RLWASDRLHPSAAGHARLAALVLAA 185 (185)
T ss_pred cccccCCCCCChhHHHHHHHHHhhC
Confidence 4455699999999999999998753
No 19
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=97.05 E-value=0.0035 Score=45.25 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEecc
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDVY 31 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~~ 31 (126)
..+-+.|+++++++++++|+++|+++-+.
T Consensus 109 ~~~~~~l~~ii~~l~~~~P~~~Iil~~~~ 137 (214)
T cd01820 109 EEIAEGILAIVEEIREKLPNAKILLLGLL 137 (214)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 34557889999999999999999988764
No 20
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=97.00 E-value=0.00065 Score=47.12 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.5
Q ss_pred ceecCCCChhHHHHHHHHHHHhc
Q 033138 87 SISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 87 y~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
.+..|++||+++||++||+.+.+
T Consensus 150 ~~~~DglH~n~~Gy~~~a~~l~~ 172 (174)
T cd01841 150 EYTTDGLHFNPKGYQKLLEILEE 172 (174)
T ss_pred cccCCCcccCHHHHHHHHHHHHh
Confidence 56789999999999999999853
No 21
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.96 E-value=0.0041 Score=43.71 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEec
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDV 30 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~ 30 (126)
..|=..|.++++.+++++|+.+|+++-.
T Consensus 87 ~~~~~~l~~li~~i~~~~~~~~iiv~~~ 114 (191)
T cd01836 87 ARWRKQLAELVDALRAKFPGARVVVTAV 114 (191)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 4566789999999999899999988754
No 22
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.93 E-value=0.0033 Score=43.87 Aligned_cols=31 Identities=35% Similarity=0.511 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeccHH
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDVYAT 33 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~ 33 (126)
..|=+.++.+++++++..|+++++++.....
T Consensus 77 ~~~~~~~~~li~~i~~~~~~~~iv~~~~~~~ 107 (189)
T cd01825 77 SEYRQQLREFIKRLRQILPNASILLVGPPDS 107 (189)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEcCCch
Confidence 4566788999999998889999999987543
No 23
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=96.68 E-value=0.0071 Score=46.62 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhCCC-cEEEEEeccH
Q 033138 3 VEFNRQLKERVIKLRTELPE-AAITYVDVYA 32 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~-~~i~~~D~~~ 32 (126)
+.|-+.|.++|+.|++.+|. +.++++-+-.
T Consensus 149 eefr~NL~~~L~~Lr~~lP~~s~ViLvgmpd 179 (305)
T cd01826 149 EEFYENVMEALKYLDTKLPNGSHVILVGLVD 179 (305)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEEeccc
Confidence 56778999999999999976 7888884433
No 24
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.45 E-value=0.0018 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.057 Sum_probs=20.8
Q ss_pred CCceecCCCChhHHHHHHHHHHHh
Q 033138 85 SKSISWDGVHYTQAANQWVANHTL 108 (126)
Q Consensus 85 ~~y~fwD~~HPT~~~h~~iA~~~~ 108 (126)
..|+.+|++||+++||++||+.+.
T Consensus 178 ~~~~~~DGvHpn~~Gy~~~A~~i~ 201 (204)
T cd01830 178 PAYDSGDHLHPNDAGYQAMADAVD 201 (204)
T ss_pred cccCCCCCCCCCHHHHHHHHHhcC
Confidence 357778999999999999999863
No 25
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=96.37 E-value=0.0023 Score=43.79 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=21.4
Q ss_pred CceecCCCChhHHHHHHHHHHHhc
Q 033138 86 KSISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 86 ~y~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
.++..|++||+++||+++|+.+.+
T Consensus 125 ~~~~~DgiHpn~~G~~~~a~~i~~ 148 (150)
T cd01840 125 DWFYGDGVHPNPAGAKLYAALIAK 148 (150)
T ss_pred hhhcCCCCCCChhhHHHHHHHHHH
Confidence 467789999999999999999875
No 26
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=96.27 E-value=0.0029 Score=45.09 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred CceecCCCChhHHHHHHHHHHHhcC
Q 033138 86 KSISWDGVHYTQAANQWVANHTLYG 110 (126)
Q Consensus 86 ~y~fwD~~HPT~~~h~~iA~~~~~~ 110 (126)
.++..|++||+++||++||+.+.+.
T Consensus 158 ~~~~~DGiHpn~~Gy~~~A~~i~~~ 182 (191)
T PRK10528 158 QWMQDDGIHPNRDAQPFIADWMAKQ 182 (191)
T ss_pred hhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 4577899999999999999998754
No 27
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=96.07 E-value=0.004 Score=42.97 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.1
Q ss_pred CceecCCCChhHHHHHHHHHHHhc
Q 033138 86 KSISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 86 ~y~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
.++.-|++||+++||++||+.+..
T Consensus 151 ~~~~~DgvHpn~~G~~~~a~~i~~ 174 (177)
T cd01822 151 ELMQSDGIHPNAEGQPIIAENVWP 174 (177)
T ss_pred hhhCCCCCCcCHHHHHHHHHHHHH
Confidence 456789999999999999999875
No 28
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=96.00 E-value=0.0058 Score=42.63 Aligned_cols=26 Identities=15% Similarity=0.150 Sum_probs=22.2
Q ss_pred CCceecCCCChhHHHHHHHHHHHhcC
Q 033138 85 SKSISWDGVHYTQAANQWVANHTLYG 110 (126)
Q Consensus 85 ~~y~fwD~~HPT~~~h~~iA~~~~~~ 110 (126)
...+..|++||+++||+++|+.+...
T Consensus 157 ~~~~~~DgvHp~~~Gy~~~a~~i~~~ 182 (183)
T cd04501 157 KPGLLTDGLHPSREGYRVMAPLAEKA 182 (183)
T ss_pred cccccCCCCCCCHHHHHHHHHHHHHh
Confidence 45667899999999999999998653
No 29
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.00 E-value=0.0049 Score=44.06 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.6
Q ss_pred eecCCCChhHHHHHHHHHHHhc
Q 033138 88 ISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 88 ~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
...|++|||+.||++||+.++.
T Consensus 182 ~~~DGvH~~~~G~~~~a~~l~~ 203 (208)
T cd01839 182 SPVDGVHLDADQHAALGQALAS 203 (208)
T ss_pred CCCCccCcCHHHHHHHHHHHHH
Confidence 4679999999999999999864
No 30
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=95.97 E-value=0.0049 Score=43.41 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.7
Q ss_pred ceecCCCChhHHHHHHHHHHHhc
Q 033138 87 SISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 87 y~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
++..|++||+++||++||+.+.+
T Consensus 169 ~~~~Dg~Hpn~~G~~~~a~~~~~ 191 (193)
T cd01835 169 LAATDGIHPNAAGYGWLAWLVLH 191 (193)
T ss_pred hhccCCCCCCHHHHHHHHHHHhc
Confidence 44469999999999999999864
No 31
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=95.92 E-value=0.0049 Score=43.11 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEecc
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDVY 31 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~~ 31 (126)
..|=..++.+++++++.+|+.+++++-..
T Consensus 88 ~~~~~~~~~~i~~~~~~~~~~~ii~~t~~ 116 (199)
T cd01838 88 DEYKENLRKIVSHLKSLSPKTKVILITPP 116 (199)
T ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEeCCC
Confidence 34567789999999988899998888653
No 32
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=95.90 E-value=0.0066 Score=43.06 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.9
Q ss_pred ceecCCCChhHHHHHHHHHHHhc
Q 033138 87 SISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 87 y~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
++..|++||++.||++||+.++.
T Consensus 174 ~~~~DgvHp~~~G~~~~a~~i~~ 196 (198)
T cd01821 174 EGPGDNTHFSEKGADVVARLVAE 196 (198)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh
Confidence 66789999999999999999875
No 33
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=95.89 E-value=0.0056 Score=46.76 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeccHHH
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDVYATK 34 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~ 34 (126)
..|-+.|+++|+.|++..|.+.++++.++.+.
T Consensus 145 ~~~~~nL~~~L~~Lr~~~P~~~V~lv~~~~~~ 176 (288)
T cd01824 145 QTFVKNLRKALDILRDEVPRAFVNLVGLLNVA 176 (288)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEcCCCcH
Confidence 56778999999999999999999999887764
No 34
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=95.72 E-value=0.0063 Score=43.00 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.9
Q ss_pred CceecCCCChhHHHHHHHHHHHhc
Q 033138 86 KSISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 86 ~y~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
.++..|++|||+.||+++|+.+..
T Consensus 173 ~~~~~DgvH~~~~G~~~~a~~i~~ 196 (200)
T cd01829 173 RLRTNDGIHFTAAGGRKLAFYVEK 196 (200)
T ss_pred EeecCCCceECHHHHHHHHHHHHH
Confidence 456679999999999999999864
No 35
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=94.68 E-value=0.065 Score=38.33 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeccH
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDVYA 32 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~ 32 (126)
..|.+.+...|+.+++++|+.-|+++....
T Consensus 74 ~~~~~~~~~fv~~iR~~hP~tPIllv~~~~ 103 (178)
T PF14606_consen 74 EEFRERLDGFVKTIREAHPDTPILLVSPIP 103 (178)
T ss_dssp TTHHHHHHHHHHHHHTT-SSS-EEEEE---
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 357788999999999999999999998443
No 36
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=94.68 E-value=0.021 Score=38.49 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=17.0
Q ss_pred CCceecCCCChhHHHHHHH
Q 033138 85 SKSISWDGVHYTQAANQWV 103 (126)
Q Consensus 85 ~~y~fwD~~HPT~~~h~~i 103 (126)
.++++.|++|||+.||++|
T Consensus 161 ~~~~~~D~~Hp~~~G~~~~ 179 (179)
T PF13472_consen 161 PKYYFSDGVHPNPAGHQLI 179 (179)
T ss_dssp HTCTBTTSSSBBHHHHHHH
T ss_pred hhhcCCCCCCcCHHHhCcC
Confidence 4678899999999999986
No 37
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=93.97 E-value=0.046 Score=39.11 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=21.2
Q ss_pred CceecCCCChhHHHHHHHHHHHhcC
Q 033138 86 KSISWDGVHYTQAANQWVANHTLYG 110 (126)
Q Consensus 86 ~y~fwD~~HPT~~~h~~iA~~~~~~ 110 (126)
.+..+|++||+.+||+.||+.+...
T Consensus 183 ~~~~~Dg~H~n~~Gy~~~a~~l~~~ 207 (216)
T COG2755 183 ELLTEDGLHPNAKGYQALAEALAEV 207 (216)
T ss_pred ccccCCCCCcCHhhHHHHHHHHHHH
Confidence 4445999999999999999998754
No 38
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=84.34 E-value=0.89 Score=32.66 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=20.8
Q ss_pred CCceecCCCChhHHHHHHHHHHHhc
Q 033138 85 SKSISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 85 ~~y~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
..+--.|++|+++.||+.+++.++.
T Consensus 156 ~~~~~~DgVHwn~~a~r~ls~lll~ 180 (183)
T cd01842 156 MQHRVRDGVHWNYVAHRRLSNLLLA 180 (183)
T ss_pred HhhcCCCCcCcCHHHHHHHHHHHHH
Confidence 3455569999999999999998863
No 39
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=82.32 E-value=0.43 Score=35.40 Aligned_cols=102 Identities=20% Similarity=0.175 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHh----hhhhCccCCCccccCcccc---cCccccCCccccCCcc
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDVYATKYELISN----AKTLGYADPFKVCCGYHEN---YHHVWCGNKATINKTE 75 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~n----P~~yGf~~~~~~Ccg~~~~---~~~~~C~~~~~~~g~~ 75 (126)
..|-+.|++++.-|+...|..+|+++-.--.-.+.-.. |..-|..-++. -|+.|.. +...-|+-. ...
T Consensus 96 ~Ey~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe-~~~~Ya~ac~~la~e~~l~----~vd 170 (245)
T KOG3035|consen 96 EEYKDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNE-TVGTYAKACANLAQEIGLY----VVD 170 (245)
T ss_pred HHHHHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhccchhccchhhhh-HHHHHHHHHHHHHHHhCCe----eee
Confidence 46778899999999887788888887654444432111 11112111111 1111110 001112211 000
Q ss_pred c--cccCCCCCCCceecCCCChhHHHHHHHHHHHhc
Q 033138 76 V--YGASCEDPSKSISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 76 ~--~~~~C~~~~~y~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
. ....-.|-.+-.|||++|.|..|++++.+.++.
T Consensus 171 lws~~Q~~~dw~~~~ltDGLHlS~~G~~ivf~Ei~k 206 (245)
T KOG3035|consen 171 LWSKMQESDDWQTSCLTDGLHLSPKGNKIVFDEILK 206 (245)
T ss_pred HHhhhhhcccHHHHHhccceeeccccchhhHHHHHH
Confidence 0 000122345568999999999999999998866
No 40
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=67.78 E-value=5.3 Score=27.09 Aligned_cols=73 Identities=12% Similarity=0.052 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHh---------------hhhhCccCCCccccCcccccCccccCCccccC
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISN---------------AKTLGYADPFKVCCGYHENYHHVWCGNKATIN 72 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~n---------------P~~yGf~~~~~~Ccg~~~~~~~~~C~~~~~~~ 72 (126)
-|+-+|+.+++.--++.|++.-+.....+-+.= -+++|| ++.
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf-~v~---------------------- 93 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGF-NVA---------------------- 93 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT---EE----------------------
T ss_pred HHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-EEE----------------------
Confidence 457778888776556667777777766654321 123444 210
Q ss_pred CccccccCCCCCCCceecCCCChhHHHHHHHHHHHh
Q 033138 73 KTEVYGASCEDPSKSISWDGVHYTQAANQWVANHTL 108 (126)
Q Consensus 73 g~~~~~~~C~~~~~y~fwD~~HPT~~~h~~iA~~~~ 108 (126)
...=..-+.|++-|.+||..+|+-.+-+.|.
T Consensus 94 -----D~s~~~y~~yfm~D~iHlgw~GWv~vd~~i~ 124 (130)
T PF04914_consen 94 -----DFSDDEYEPYFMQDTIHLGWKGWVYVDQAIY 124 (130)
T ss_dssp -----E-TTGTTSTTSBSSSSSB-THHHHHHHHHHH
T ss_pred -----ecccCCCCCceeeecccCchhhHHHHHHHHH
Confidence 0011123568999999999999988877764
No 41
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=62.36 E-value=20 Score=27.73 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCc----EEEEEeccHHHHHHHHhhhhhCccCC
Q 033138 3 VEFNRQLKERVIKLRTELPEA----AITYVDVYATKYELISNAKTLGYADP 49 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~----~i~~~D~~~~~~~i~~nP~~yGf~~~ 49 (126)
+.||.+|...=+++..++..+ -|++-|.|.+|.+ +||++.+
T Consensus 187 k~f~~~La~~d~~i~~~L~pvk~Kpf~VFHDAY~YFE~------~ygl~~~ 231 (318)
T COG4531 187 KDFEAQLAALDKKVGEELAPVKGKPFFVFHDAYGYFEN------AYGLKPL 231 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCeEEEechHHHHHH------hhCcccc
Confidence 568999988888888877654 3777799999987 6787764
No 42
>PF06812 ImpA-rel_N: ImpA-related N-terminal; InterPro: IPR010657 This entry represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=53.04 E-value=5.6 Score=23.13 Aligned_cols=9 Identities=33% Similarity=0.715 Sum_probs=7.7
Q ss_pred eecCCCChh
Q 033138 88 ISWDGVHYT 96 (126)
Q Consensus 88 ~fwD~~HPT 96 (126)
-|||..||.
T Consensus 52 ~~W~~l~P~ 60 (62)
T PF06812_consen 52 NYWDSLHPQ 60 (62)
T ss_pred HCCcccCCC
Confidence 489999995
No 43
>KOG3670 consensus Phospholipase [Lipid transport and metabolism]
Probab=53.00 E-value=11 Score=30.32 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=25.9
Q ss_pred CCCCceecCCCChhHHHHHHHHHHHhcCCC
Q 033138 83 DPSKSISWDGVHYTQAANQWVANHTLYGSL 112 (126)
Q Consensus 83 ~~~~y~fwD~~HPT~~~h~~iA~~~~~~~~ 112 (126)
.+.+++--|-+|.++.||.++|+.+|+.-+
T Consensus 322 ~d~~ffa~DcfHlS~~GHa~~ak~lWNnl~ 351 (397)
T KOG3670|consen 322 YDLTFFAPDCFHLSQRGHAIAAKHLWNNLF 351 (397)
T ss_pred CCchhcccCccccchHHHHHHHHHHHHHhh
Confidence 345678889999999999999999998854
No 44
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=46.07 E-value=38 Score=21.87 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccH
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYA 32 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~ 32 (126)
.+.-.+.+|..+||++.|+-+|+..
T Consensus 38 ~i~P~~~~La~~y~~v~Flkvdvde 62 (106)
T KOG0907|consen 38 AIAPKFEKLAEKYPDVVFLKVDVDE 62 (106)
T ss_pred hhhhHHHHHHHHCCCCEEEEEeccc
Confidence 4566788999999999999999998
No 45
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=42.32 E-value=36 Score=27.66 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccH
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYA 32 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~ 32 (126)
.+.+.+++|++..|+..++|+|+|.
T Consensus 159 ~~~~R~~~L~~~~~~ld~iYvDV~~ 183 (425)
T PF12905_consen 159 ARFKRFDQLKETVPNLDFIYVDVWY 183 (425)
T ss_dssp HHHHHHHHHHHHTTT--EEEEESTT
T ss_pred hHHHHHHHHhccccCCCeEEEEecc
Confidence 4556678888888999999999864
No 46
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=41.71 E-value=45 Score=26.45 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
..++...++.+++|++.+-..=+-+....++.+|..|.
T Consensus 199 lf~~~~~eva~~yp~v~~~~~~vD~~~~~lv~~P~~fD 236 (352)
T TIGR02089 199 FWDEVFAEVAAEYPDVEWDSYHIDALAARFVLKPETFD 236 (352)
T ss_pred HHHHHHHHHHhhCCCceEeeehHHHHHHHHhcChhhCc
Confidence 34556677888999998877777788899999999886
No 47
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=41.02 E-value=48 Score=24.28 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEeccH
Q 033138 6 NRQLKERVIKLRTELPEAAITYVDVYA 32 (126)
Q Consensus 6 N~~L~~~l~~l~~~~~~~~i~~~D~~~ 32 (126)
++.....++.+++++|+.+|+.-|++.
T Consensus 19 ~~l~~~Fi~~yk~~~P~dev~~~DL~~ 45 (202)
T COG1182 19 RKLADEFIETYKEKHPNDEVIERDLAA 45 (202)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeeccc
Confidence 456677889999999999999999975
No 48
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=39.88 E-value=85 Score=19.86 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhCccC
Q 033138 7 RQLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLGYAD 48 (126)
Q Consensus 7 ~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yGf~~ 48 (126)
+.|...+++|.+++++++++.+|.... ++ .++||...
T Consensus 40 ~~l~~~l~~la~~~~~v~f~~vd~~~~--~l---~~~~~i~~ 76 (113)
T cd02957 40 KILDSHLEELAAKYPETKFVKINAEKA--FL---VNYLDIKV 76 (113)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEchhh--HH---HHhcCCCc
Confidence 456778888888899999999999875 33 34566543
No 49
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=39.59 E-value=58 Score=25.66 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=32.7
Q ss_pred HHHHHHHHHHh-hCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 8 QLKERVIKLRT-ELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 8 ~L~~~l~~l~~-~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
..++..+++.+ ++|++.+-..-+-++...++.+|+.|.
T Consensus 195 lf~~~~~eva~~~yp~I~~~~~~vD~~~~~Lv~~P~~fd 233 (348)
T PF00180_consen 195 LFREVFQEVAKQEYPDIEVEHMLVDAAAMQLVKNPEQFD 233 (348)
T ss_dssp HHHHHHHHHHHHTHTTSEEEEEEHHHHHHHHHHSGGGES
T ss_pred HHHHHHHHHHHhhcceeEeeeeechhhhheeecCCccee
Confidence 45667777777 899999999989999999999999887
No 50
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=39.54 E-value=56 Score=20.96 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhCccC
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLGYAD 48 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yGf~~ 48 (126)
.+...+.+|.+++|+++++.+|....-. + .++|+...
T Consensus 39 ~~~p~l~~la~~~~~i~f~~Vd~~~~~~-l---~~~~~v~~ 75 (113)
T cd02989 39 IMDKHLEILAKKHLETKFIKVNAEKAPF-L---VEKLNIKV 75 (113)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCHH-H---HHHCCCcc
Confidence 5566788888889999999999887432 2 24566554
No 51
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=39.01 E-value=39 Score=26.69 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
..++...+..++||++++-..=+-++...++.+|++|.
T Consensus 196 lf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fD 233 (344)
T PRK03437 196 LWQRTVDEVAAEYPDVTVDYQHVDAATIFMVTDPSRFD 233 (344)
T ss_pred HHHHHHHHHHhhCCCceEeehhHHHHHHHHhcCcccCc
Confidence 44566777888999988877777788889999999987
No 52
>smart00340 HALZ homeobox associated leucin zipper.
Probab=38.19 E-value=36 Score=18.57 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhh
Q 033138 5 FNRQLKERVIKLRTE 19 (126)
Q Consensus 5 ~N~~L~~~l~~l~~~ 19 (126)
=|.+|+..|++|++-
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 489999999999863
No 53
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=37.60 E-value=47 Score=22.51 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHHHHhhC
Q 033138 1 MAVEFNRQLKERVIKLRTEL 20 (126)
Q Consensus 1 ~s~~~N~~L~~~l~~l~~~~ 20 (126)
++..||+.|+..|+++.+++
T Consensus 76 lt~rF~~aL~~~L~~yq~~H 95 (128)
T PRK13717 76 LSARFNTALEASLQAWQQKH 95 (128)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 36789999999999998765
No 54
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=37.48 E-value=53 Score=26.17 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
..++.+.+..++||++.+-..=+-++...++.+|..|.
T Consensus 204 lf~~~~~eva~eyPdV~~~~~~VDa~~~~Lv~~P~~fD 241 (360)
T PLN00123 204 LFLESCREVAKKYPGIKYNEIIVDNCCMQLVSKPEQFD 241 (360)
T ss_pred HHHHHHHHHHhhCCCceEeeeeHHHHHHHHhhCcccCc
Confidence 45566777888999998888888899999999999986
No 55
>PRK08194 tartrate dehydrogenase; Provisional
Probab=36.71 E-value=59 Score=25.82 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
..++...+..+++|++.+-..-+-+....++.+|.+|.
T Consensus 196 lf~~~~~eva~~yp~V~~~~~~vDa~~~~Lv~~P~~fD 233 (352)
T PRK08194 196 FWDEVFQEVGKDYPEIETDSQHIDALAAFFVTRPEEFD 233 (352)
T ss_pred HHHHHHHHHHhhCCCceeeehhHHHHHHHHhhChhhCc
Confidence 44556677888999998877777788899999999987
No 56
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=36.46 E-value=64 Score=25.67 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
..++...++.+++|++.+-..=+-++...++.+|..|.
T Consensus 200 lf~~~~~eva~eyp~i~~~~~~vDa~~~~lv~~P~~fD 237 (358)
T PRK00772 200 LWREVVTEVAKEYPDVELSHMYVDNAAMQLVRNPKQFD 237 (358)
T ss_pred HHHHHHHHHHhHCCCceEEEEeHHHHHHHHhhCcccCe
Confidence 34566777888999998888888889999999999985
No 57
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=35.65 E-value=85 Score=23.90 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=23.0
Q ss_pred CceecCCCChhHHHHHHHHHHHhcC
Q 033138 86 KSISWDGVHYTQAANQWVANHTLYG 110 (126)
Q Consensus 86 ~y~fwD~~HPT~~~h~~iA~~~~~~ 110 (126)
+++-+|.+||+++||.+||+.+|..
T Consensus 258 ~~~~~D~~Hps~~G~~~ia~~lwn~ 282 (288)
T cd01824 258 SFFSPDCFHFSQRGHAIAANALWNN 282 (288)
T ss_pred hhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 6788999999999999999999865
No 58
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=35.45 E-value=57 Score=25.63 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 7 RQLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 7 ~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
...++.++++.++||++.+-..=+-++...++.+|..|.
T Consensus 180 glf~~~~~eva~~yp~v~~~~~~vDa~~~~lv~~P~~fd 218 (333)
T TIGR00175 180 GLFLNVCREVAKEYPDITFESMIVDNTCMQLVSRPSQFD 218 (333)
T ss_pred HHHHHHHHHHHHHCCCCeeeeeeHHHHHHHHhcCccccc
Confidence 345666777888899998888888889999999999875
No 59
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=35.24 E-value=70 Score=25.22 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
..++..++..++||++.+-..=+-++...++.+|.+|.
T Consensus 183 lf~~~~~eva~~yP~V~~~~~~vDa~~~~lv~~P~~fd 220 (334)
T PRK08997 183 LFLKVAREVALRYPDIEFEEMIVDATCMQLVMNPEQFD 220 (334)
T ss_pred HHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhhCcccCc
Confidence 45566777788899988766666677789999999986
No 60
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=32.89 E-value=78 Score=25.09 Aligned_cols=38 Identities=11% Similarity=0.248 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
..++..++..++||++++-..=+-++...++.+|..|.
T Consensus 197 lf~~~~~eva~~yP~I~~~~~~vDa~~~~Lv~~P~~fD 234 (349)
T TIGR00169 197 LWRKTVEEIAKEYPDVELEHQYIDNAAMQLVKSPTQFD 234 (349)
T ss_pred HHHHHHHHHHhhCCCceEEeeeHHHHHHHHHhCccCce
Confidence 34556667778899998877777788899999999875
No 61
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=32.32 E-value=1.7e+02 Score=22.20 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEeccH----HHHHHHHhhhhhC
Q 033138 4 EFNRQLKERVIKLRTELPEAAITYVDVYA----TKYELISNAKTLG 45 (126)
Q Consensus 4 ~~N~~L~~~l~~l~~~~~~~~i~~~D~~~----~~~~i~~nP~~yG 45 (126)
.||+...+.+.+++++++++++.+.+.-. -+...++.-..-|
T Consensus 16 g~n~~~~~G~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~g 61 (306)
T PF02608_consen 16 GFNQSAYEGLKRAEKELDGIEIIYVENVPETDADYEEAIRQLADQG 61 (306)
T ss_dssp SHHHHHHHHHHHHHHHCTTEEEEEEES-S-TCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHcCCceEEEEecCCccHHHHHHHHHHHHHcC
Confidence 48999999999999999899998887754 5666666554444
No 62
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=31.88 E-value=71 Score=25.61 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 7 RQLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 7 ~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
...++.++++.++||++.+-..=+-++...++.+|..|.
T Consensus 219 glf~e~~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~fD 257 (372)
T PLN00118 219 GLFLKCCREVAEKYPEIVYEEVIIDNCCMMLVKNPALFD 257 (372)
T ss_pred HHHHHHHHHHHhhCCCceEEeeeHHHHHHHhccCcccCc
Confidence 345667778888999988777777788899999999875
No 63
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=31.52 E-value=50 Score=19.18 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhCCC--cEEEEEeccHHHHHHH--HhhhhhCccCC
Q 033138 9 LKERVIKLRTELPE--AAITYVDVYATKYELI--SNAKTLGYADP 49 (126)
Q Consensus 9 L~~~l~~l~~~~~~--~~i~~~D~~~~~~~i~--~nP~~yGf~~~ 49 (126)
+.++|.++-.+.++ ..+.+.++...+.... =+|..|||...
T Consensus 6 ~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l 50 (74)
T PF12872_consen 6 LKKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSSL 50 (74)
T ss_dssp HHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSSSH
T ss_pred HHHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCCcH
Confidence 34444444323333 3677788888888887 35789999865
No 64
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=30.08 E-value=1.4e+02 Score=21.64 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhh
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISNA 41 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP 41 (126)
.|+....++.+..|+.+++|++...+..++++.-
T Consensus 50 LL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~ 83 (219)
T PF00308_consen 50 LLQAIANEAQKQHPGKRVVYLSAEEFIREFADAL 83 (219)
T ss_dssp HHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccceeecHHHHHHHHHHHH
Confidence 5677777788888999999999988888876654
No 65
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=29.71 E-value=84 Score=24.72 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 7 RQLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 7 ~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
...++.+++..+++|++.+-..=+-++...++.+|+.|.
T Consensus 179 glf~e~~~eva~~yp~i~~~~~~vDa~~~~lv~~P~~fD 217 (330)
T PRK14025 179 GLFKKTFYEVAKEYPDIKAEDYYVDAMNMYIITRPQTFD 217 (330)
T ss_pred HHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhcCcccCc
Confidence 345667777888899988777777778889999999886
No 66
>PRK13555 azoreductase; Provisional
Probab=29.32 E-value=96 Score=22.44 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=23.3
Q ss_pred HHHHHH-HHHHHHHHhhCCCcEEEEEeccHH
Q 033138 4 EFNRQL-KERVIKLRTELPEAAITYVDVYAT 33 (126)
Q Consensus 4 ~~N~~L-~~~l~~l~~~~~~~~i~~~D~~~~ 33 (126)
.++.+| +..++.+++..|+..+.+.|+|..
T Consensus 17 S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~ 47 (208)
T PRK13555 17 AVSSKMYETFVSTYKEANPNTEITELDLFAL 47 (208)
T ss_pred cHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 356666 455677888889999999999885
No 67
>PTZ00195 60S ribosomal protein L18; Provisional
Probab=28.98 E-value=51 Score=24.03 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCchhccc
Q 033138 98 AANQWVANHTLYGSLTDPPIPITQAC 123 (126)
Q Consensus 98 ~~h~~iA~~~~~~~~~~pp~~~~~~~ 123 (126)
..|+.|++.+.......||+||.++.
T Consensus 43 ~fnk~VakRL~~sr~nRppVsLSrI~ 68 (198)
T PTZ00195 43 GFNKVVYQRLIKSRSNRAPISLSRIA 68 (198)
T ss_pred HHHHHHHHHHhcccccCCceeHHHHH
Confidence 57899999999999999999998764
No 68
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=27.61 E-value=1.2e+02 Score=16.87 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccH
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYA 32 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~ 32 (126)
++...++++....+++.+..+|...
T Consensus 16 ~~~~~l~~l~~~~~~i~~~~id~~~ 40 (67)
T cd02973 16 DAVQAANRIAALNPNISAEMIDAAE 40 (67)
T ss_pred HHHHHHHHHHHhCCceEEEEEEccc
Confidence 4566778887777888999998754
No 69
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=27.45 E-value=1.2e+02 Score=20.14 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhCCC-cEEEEEeccHH
Q 033138 8 QLKERVIKLRTELPE-AAITYVDVYAT 33 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~-~~i~~~D~~~~ 33 (126)
.+...+.+|..++++ +.|+.+|+-..
T Consensus 31 ~mdp~l~ela~~~~~~~~f~kVDVDev 57 (114)
T cd02986 31 QLDDILSKTSHDLSKMASIYLVDVDKV 57 (114)
T ss_pred HHHHHHHHHHHHccCceEEEEEecccc
Confidence 455678889888998 99999998743
No 70
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=26.61 E-value=62 Score=20.67 Aligned_cols=31 Identities=19% Similarity=0.026 Sum_probs=22.2
Q ss_pred CCceecCCCChhHH-HHHHHHHHHhcCCCCCC
Q 033138 85 SKSISWDGVHYTQA-ANQWVANHTLYGSLTDP 115 (126)
Q Consensus 85 ~~y~fwD~~HPT~~-~h~~iA~~~~~~~~~~p 115 (126)
=++-+-|-.||++. -.+.+|+++.+..+++|
T Consensus 38 f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYP 69 (93)
T PF07315_consen 38 FEFTYIDIENPPENDHDQQFAERILEDELFYP 69 (93)
T ss_dssp EEEEEEETTT----HHHHHHHHHHHTTSS-SS
T ss_pred eEEEEEecCCCCccHHHHHHHHHHHhcccccc
Confidence 35667799999986 67899999999999998
No 71
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=26.56 E-value=18 Score=27.35 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=18.0
Q ss_pred CcEEEEEeccHHHHHHHHhhhhhCccCCCccccCcccc
Q 033138 22 EAAITYVDVYATKYELISNAKTLGYADPFKVCCGYHEN 59 (126)
Q Consensus 22 ~~~i~~~D~~~~~~~i~~nP~~yGf~~~~~~Ccg~~~~ 59 (126)
|.-+.-..+-.++..++ +|.. -..+.+||||+|.+
T Consensus 26 G~~~TP~~i~~l~~~~~-~~~~--~~~VlDPacGsG~f 60 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLL-NPKK--GDSVLDPACGSGGF 60 (311)
T ss_dssp GGC---HHHHHHHHHHH-TT-T--TEEEEETT-TTSHH
T ss_pred ceeehHHHHHHHHHhhh-hccc--cceeechhhhHHHH
Confidence 44555556666666666 2221 12367899998653
No 72
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=26.48 E-value=94 Score=20.57 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 033138 2 AVEFNRQLKERVIKLRTEL 20 (126)
Q Consensus 2 s~~~N~~L~~~l~~l~~~~ 20 (126)
+..||+.|+..|+++++++
T Consensus 64 ~~rF~~~L~~~L~~yq~~H 82 (112)
T TIGR02744 64 LGRFNALLEAELQAWQAQH 82 (112)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 5789999999999998865
No 73
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=26.33 E-value=70 Score=17.90 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=12.9
Q ss_pred cCCCChhHHHHHHHHHHHhc
Q 033138 90 WDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 90 wD~~HPT~~~h~~iA~~~~~ 109 (126)
||.+| .||..++++..+
T Consensus 8 Fdp~H---~GH~~~l~~a~~ 24 (66)
T TIGR00125 8 FDPFH---LGHLDLLERAKE 24 (66)
T ss_pred cCCCC---HHHHHHHHHHHH
Confidence 68888 588888876543
No 74
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=26.23 E-value=2e+02 Score=21.29 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhhCC-CcEEEEEeccHHHHHHHHhhhhhCccC
Q 033138 3 VEFNRQLKERVIKLRTELP-EAAITYVDVYATKYELISNAKTLGYAD 48 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~-~~~i~~~D~~~~~~~i~~nP~~yGf~~ 48 (126)
..+...++.+|+++++..+ .+++-++|...--...-+--..||++.
T Consensus 42 ~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 42 SPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 4567889999999998888 799999998443344433345688765
No 75
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=26.02 E-value=1.2e+02 Score=21.24 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeccHH
Q 033138 7 RQLKERVIKLRTELPEAAITYVDVYAT 33 (126)
Q Consensus 7 ~~L~~~l~~l~~~~~~~~i~~~D~~~~ 33 (126)
+.|...|..|.+++|+++|+-+|.-..
T Consensus 99 k~m~~~l~~LA~~~~~vkF~kVd~d~~ 125 (175)
T cd02987 99 AALNSSLLCLAAEYPAVKFCKIRASAT 125 (175)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEeccch
Confidence 356677888888999999999999864
No 76
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=25.84 E-value=63 Score=21.29 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=13.8
Q ss_pred ecCCCChhHHHHHHHHHHHhc
Q 033138 89 SWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 89 fwD~~HPT~~~h~~iA~~~~~ 109 (126)
.||++| .||..+.+.+.+
T Consensus 9 ~FD~~H---~GH~~ll~~a~~ 26 (136)
T cd02170 9 TFDIIH---PGHIRFLEEAKK 26 (136)
T ss_pred ccCCCC---HHHHHHHHHHHH
Confidence 479999 588888876654
No 77
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=25.63 E-value=64 Score=21.03 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=13.8
Q ss_pred ecCCCChhHHHHHHHHHHHhc
Q 033138 89 SWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 89 fwD~~HPT~~~h~~iA~~~~~ 109 (126)
.||++| .||+.+.+.+.+
T Consensus 9 ~FDgvH---~GH~~ll~~a~~ 26 (129)
T cd02171 9 TFDLLH---IGHLNLLERAKA 26 (129)
T ss_pred eeccCC---HHHHHHHHHHHH
Confidence 589999 588888776553
No 78
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=25.33 E-value=79 Score=22.50 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhh
Q 033138 3 VEFNRQLKERVIKLRTELPEAAITYVDVYATKYELISNAK 42 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~ 42 (126)
.+||.-+++.|++++++.|+.. --..|...-.|-+
T Consensus 127 saYn~f~k~ei~rik~~~p~is-----hkeaFs~aAknW~ 161 (170)
T PF04690_consen 127 SAYNRFMKEEIQRIKAENPDIS-----HKEAFSAAAKNWA 161 (170)
T ss_pred hhHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHhhh
Confidence 4799999999999999998853 3445555544433
No 79
>PLN02329 3-isopropylmalate dehydrogenase
Probab=25.24 E-value=59 Score=26.41 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 9 LKERVIKLRTELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 9 L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
.++..++..++||++++-..=+-++...++.+|++|.
T Consensus 246 f~~~~~evA~eyPdV~~~~~~VDa~a~~LV~~P~~FD 282 (409)
T PLN02329 246 WRKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQFD 282 (409)
T ss_pred HHHHHHHHHhhCCCcccchhHHHHHHHHHhcCchhCC
Confidence 3455667788899987777667778899999999987
No 80
>cd08445 PBP2_BenM_CatM_CatR The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold. This CD includes the C-terminal of LysR-type transcription regulators, BenM, CatM, and CatR, which are involved in the benzoate catabolism. The BenM and CatM are paralogs with overlapping functions. BenM responds synergistically to two effectors, benzoate and cis,cis-muconate, to activate expression of the benABCDE operon which is involved in benzoate catabolism, while CatM responses only to muconate. BenM and CatM share high protein sequence identity and bind to the operator-promoter regions that have similar DNA sequences. In Pseudomonas species, phenolic compounds are converted by different enzymes to central intermediates, such as protocatechuate and catechols. Generally, unsubstituted compounds, such as benzoate, are metabolized by an ortho-cleavage pathway. The catBCA operon encodes three enzymes
Probab=25.10 E-value=1.2e+02 Score=20.09 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEe--ccHHHHHHHHhhhhhCc
Q 033138 6 NRQLKERVIKLRTELPEAAITYVD--VYATKYELISNAKTLGY 46 (126)
Q Consensus 6 N~~L~~~l~~l~~~~~~~~i~~~D--~~~~~~~i~~nP~~yGf 46 (126)
...|...+.++.+++|++++-+.. .......+.++-...|+
T Consensus 13 ~~~l~~~l~~~~~~~P~i~l~i~~~~~~~~~~~l~~~~~Dl~i 55 (203)
T cd08445 13 YGLLPELIRRFRQAAPDVEIELIEMTTVQQIEALKEGRIDVGF 55 (203)
T ss_pred HhHHHHHHHHHHHHCCCeEEEEEeCChHHHHHHHHcCCCcEEE
Confidence 456788899999999999888775 34555666555555555
No 81
>cd08448 PBP2_LTTR_aromatics_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type regulator similar to CbnR which is involved in the regulation of chlorocatechol breakdown. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Ve
Probab=25.01 E-value=1.3e+02 Score=19.55 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEe--ccHHHHHHHHhhhhhCcc
Q 033138 6 NRQLKERVIKLRTELPEAAITYVD--VYATKYELISNAKTLGYA 47 (126)
Q Consensus 6 N~~L~~~l~~l~~~~~~~~i~~~D--~~~~~~~i~~nP~~yGf~ 47 (126)
+..|...+.++.+++|++++.+.. .......+.+.--..|+.
T Consensus 12 ~~~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~~l~~~~~Di~i~ 55 (197)
T cd08448 12 YRGLPRILRAFRAEYPGIEVALHEMSSAEQIEALLRGELDLGFV 55 (197)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHcCCcceEEE
Confidence 456778899999999999887764 455566665544445553
No 82
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=24.56 E-value=1.4e+02 Score=21.05 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhh-CCCcEEEEEeccHH
Q 033138 3 VEFNRQLKERVIKLRTE-LPEAAITYVDVYAT 33 (126)
Q Consensus 3 ~~~N~~L~~~l~~l~~~-~~~~~i~~~D~~~~ 33 (126)
..||..|......|+++ .|+..+.++..-.+
T Consensus 10 ~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el 41 (164)
T PF11965_consen 10 EHYNSALYRAAARLNRDHCPGLELSVFAAAEL 41 (164)
T ss_pred hhhhHHHHHHHHHHhhccCCCeEEEEEeHHHh
Confidence 46899999999999888 89999888876654
No 83
>PTZ00469 60S ribosomal subunit protein L18; Provisional
Probab=24.22 E-value=69 Score=23.19 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCchhccc
Q 033138 98 AANQWVANHTLYGSLTDPPIPITQAC 123 (126)
Q Consensus 98 ~~h~~iA~~~~~~~~~~pp~~~~~~~ 123 (126)
..|+.||+++.......||+||.++.
T Consensus 43 ~fwk~Va~RL~~srrnr~pVnLSkI~ 68 (187)
T PTZ00469 43 NFNKIIAKRLIMPKRFRPPLSLSKLH 68 (187)
T ss_pred hHHHHHHHHHhcccccCCceeHHHHH
Confidence 57899999999999999999998764
No 84
>TIGR03363 VI_chp_8 type VI secretion-associated protein, ImpA family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=24.00 E-value=28 Score=27.41 Aligned_cols=9 Identities=44% Similarity=0.730 Sum_probs=7.9
Q ss_pred eecCCCChh
Q 033138 88 ISWDGVHYT 96 (126)
Q Consensus 88 ~fwD~~HPT 96 (126)
=|||.+||.
T Consensus 104 ~~Wd~l~P~ 112 (353)
T TIGR03363 104 RYWDDVHPL 112 (353)
T ss_pred HcchhcCCC
Confidence 489999995
No 85
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=23.83 E-value=44 Score=18.82 Aligned_cols=16 Identities=6% Similarity=0.098 Sum_probs=12.7
Q ss_pred ccHHHHHHHHhhhhhC
Q 033138 30 VYATKYELISNAKTLG 45 (126)
Q Consensus 30 ~~~~~~~i~~nP~~yG 45 (126)
..+.+...++||..||
T Consensus 33 Sr~~Ir~yl~dP~~yg 48 (50)
T PF11427_consen 33 SRTCIRRYLKDPVNYG 48 (50)
T ss_dssp -HHHHHHHHHSCCCTT
T ss_pred cHHHHHHHhcChhhcc
Confidence 3567888899999998
No 86
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=23.69 E-value=1.6e+02 Score=18.06 Aligned_cols=37 Identities=8% Similarity=0.037 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhCccC
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLGYAD 48 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yGf~~ 48 (126)
.+...+.++.+++|++++..+|....-. -...||...
T Consensus 29 ~~~~~~~~l~~~~~~i~~~~vd~~~~~e----~a~~~~V~~ 65 (89)
T cd03026 29 DVVQALNLMAVLNPNIEHEMIDGALFQD----EVEERGIMS 65 (89)
T ss_pred HHHHHHHHHHHHCCCceEEEEEhHhCHH----HHHHcCCcc
Confidence 4667788888888999999999765422 224677653
No 87
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=23.45 E-value=25 Score=22.87 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEec-cHHHHHH
Q 033138 5 FNRQLKERVIKLRTELPEAAITYVDV-YATKYEL 37 (126)
Q Consensus 5 ~N~~L~~~l~~l~~~~~~~~i~~~D~-~~~~~~i 37 (126)
||..+...+.++.++ .++++...|+ |.+++++
T Consensus 74 FNv~~~~~~~~~a~~-~~V~I~~~~VIY~L~ddi 106 (108)
T PF11987_consen 74 FNVKVSPDAKDLAKK-SGVKIRSHNVIYDLIDDI 106 (108)
T ss_dssp SSS-B-HHHHHCHHS-STSEEEESTTCCHHHHHH
T ss_pred eeCCCCHHHHHHHHH-cCCEEEEeCHHHHHHHHh
Confidence 666666667666554 5888988887 8888776
No 88
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=23.02 E-value=1.3e+02 Score=23.53 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
..++..+++.+++| +.+-..=+-++...++.+|..|.
T Consensus 176 lf~~~~~eva~~yp-v~~~~~~vDa~~~~lv~~P~~fd 212 (322)
T TIGR02088 176 LFREVCREIAKRYG-VEYRDMYVDSAAMNLVKDPWRFD 212 (322)
T ss_pred HHHHHHHHHHHhCC-eeeeeeeHHHHHHHHhhCCcCce
Confidence 45667778888999 87777777788889999999885
No 89
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=22.88 E-value=1.4e+02 Score=21.24 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhCccCC
Q 033138 7 RQLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLGYADP 49 (126)
Q Consensus 7 ~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yGf~~~ 49 (126)
+.|...+.+|.++++.++|+-+|+-.. ..+|+...+
T Consensus 118 ~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~i~~l 153 (192)
T cd02988 118 RLLNQHLSELARKFPDTKFVKIISTQC-------IPNYPDKNL 153 (192)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCCCCCC
Confidence 356778888999999999999998642 356765543
No 90
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=22.74 E-value=2.2e+02 Score=19.38 Aligned_cols=38 Identities=32% Similarity=0.347 Sum_probs=27.8
Q ss_pred HHHHHHHHhhCCC-cEEEEEeccHHHHHHH-HhhhhhCcc
Q 033138 10 KERVIKLRTELPE-AAITYVDVYATKYELI-SNAKTLGYA 47 (126)
Q Consensus 10 ~~~l~~l~~~~~~-~~i~~~D~~~~~~~i~-~nP~~yGf~ 47 (126)
++.+++|++++|+ ..++-+-++++-...| +.-++.|.+
T Consensus 14 ~~iv~~lr~~~~~~~eI~AlGTNa~AT~~MlKaGA~~gAT 53 (131)
T PF12953_consen 14 KQIVEKLRKELPEEVEIIALGTNAIATSAMLKAGANEGAT 53 (131)
T ss_pred HHHHHHHHHhCCCCcEEEEEehhHHHHHHHHHcCCCCccc
Confidence 4678899999998 8999999988776654 344445543
No 91
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=22.72 E-value=1.6e+02 Score=19.28 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 033138 2 AVEFNRQLKERVIKLRTEL 20 (126)
Q Consensus 2 s~~~N~~L~~~l~~l~~~~ 20 (126)
+..||+.|...|.++.+++
T Consensus 63 t~~F~~aL~~~L~~~~~~h 81 (111)
T PF09677_consen 63 TQRFMQALEASLAEYQAEH 81 (111)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 5789999999999998753
No 92
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=22.38 E-value=1.7e+02 Score=20.74 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHh
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISN 40 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~n 40 (126)
.|..+++..+.++|+.++.+++.-.-+-.-+.+
T Consensus 32 ~lp~lv~~~N~r~P~LnL~~~~~~~~~~~~i~~ 64 (177)
T PF03421_consen 32 MLPALVAAENARYPGLNLHFFDSPEDFVQAIKE 64 (177)
T ss_pred HHHHHHHHHhhcCCCCceEEcCCcHHHHHHHHh
Confidence 467788889999999999999987777666644
No 93
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=22.16 E-value=1.7e+02 Score=21.96 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=22.3
Q ss_pred HHHHHHHHhhCCCcEEEEEeccHHHHHHHHh
Q 033138 10 KERVIKLRTELPEAAITYVDVYATKYELISN 40 (126)
Q Consensus 10 ~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~n 40 (126)
.-.++.|++.+|+++|.++ +...+.+++++
T Consensus 17 ~p~l~~Lr~~~P~a~I~~l-~~~~~~~~~~~ 46 (319)
T TIGR02193 17 LPALTDIKRALPDVEIDWV-VEEGFADIVRL 46 (319)
T ss_pred HHHHHHHHHhCCCCEEEEE-EChhHhhhhhc
Confidence 3467889999999988887 55666666653
No 94
>PRK13556 azoreductase; Provisional
Probab=21.95 E-value=1.6e+02 Score=20.95 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=19.9
Q ss_pred HHHH-HHHHHHHHhhCCCcEEEEEeccH
Q 033138 6 NRQL-KERVIKLRTELPEAAITYVDVYA 32 (126)
Q Consensus 6 N~~L-~~~l~~l~~~~~~~~i~~~D~~~ 32 (126)
+.+| +..++.+++.+|+.++.+.|++.
T Consensus 19 s~~l~~~~~~~~~~~~~~~~V~~~DL~~ 46 (208)
T PRK13556 19 SVKLYEAFLASYKEAHPNDTVVELDLYK 46 (208)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3334 44666777778899999999983
No 95
>cd08467 PBP2_SyrM The C-terminal substrate binding of LysR-type symbiotic regulator SyrM, which activates expression of nodulation gene NodD3, contains the type 2 periplasmic binding fold. Rhizobium is a nitrogen fixing bacteria present in the roots of leguminous plants, which fixes atmospheric nitrogen to the soil. Most Rhizobium species possess multiple nodulation (nod) genes for the development of nodules. For example, Rhizobium meliloti possesses three copies of nodD genes. NodD1 and NodD2 activate nod operons when Rhizobium is exposed to inducers synthesized by the host plant, while NodD3 acts independent of plant inducers and requires the symbiotic regulator SyrM for nod gene expression. SyrM activates the expression of the regulatory nodulation gene nodD3. In turn, NodD3 activates expression of syrM. In addition, SyrM is involved in exopolysaccharide synthesis. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are
Probab=21.91 E-value=1.5e+02 Score=19.66 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEec--cHHHHHHHHhhhhhCcc
Q 033138 6 NRQLKERVIKLRTELPEAAITYVDV--YATKYELISNAKTLGYA 47 (126)
Q Consensus 6 N~~L~~~l~~l~~~~~~~~i~~~D~--~~~~~~i~~nP~~yGf~ 47 (126)
...|...+.++++++|++++.+... ......+.+.-...|+.
T Consensus 12 ~~~l~~~l~~~~~~~P~i~l~~~~~~~~~~~~~l~~g~~D~~i~ 55 (200)
T cd08467 12 VALLPRLAPRLRERAPGLDLRLCPIGDDLAERGLEQGTIDLAVG 55 (200)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEecCCcccHHHHhhCCCcCEEEe
Confidence 3457788899999999999888854 44666666655556663
No 96
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=21.84 E-value=1.8e+02 Score=19.09 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhCCC-cEEEEEeccHHHHHHHHhhhhhCccC
Q 033138 7 RQLKERVIKLRTELPE-AAITYVDVYATKYELISNAKTLGYAD 48 (126)
Q Consensus 7 ~~L~~~l~~l~~~~~~-~~i~~~D~~~~~~~i~~nP~~yGf~~ 48 (126)
+.+...+.+|..++++ ++++.+|+-..- ++ .+.||...
T Consensus 30 k~m~P~le~la~~~~~~v~f~kVDvD~~~-~l---a~~~~V~~ 68 (114)
T cd02954 30 MQMDEVLAKIAEDVSNFAVIYLVDIDEVP-DF---NKMYELYD 68 (114)
T ss_pred HHHHHHHHHHHHHccCceEEEEEECCCCH-HH---HHHcCCCC
Confidence 3567778889888987 589999997632 22 24667554
No 97
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=21.52 E-value=77 Score=21.88 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=10.1
Q ss_pred ecCCCChhHHHHHHHHHHHh
Q 033138 89 SWDGVHYTQAANQWVANHTL 108 (126)
Q Consensus 89 fwD~~HPT~~~h~~iA~~~~ 108 (126)
+||++| .||+.+-+.+.
T Consensus 13 ~FDGvH---~GHq~Li~~~~ 29 (157)
T PF06574_consen 13 NFDGVH---LGHQKLIKKAV 29 (157)
T ss_dssp --TT-----HHHHHHHHHHH
T ss_pred CCCCcc---HHHHHHHHHHh
Confidence 479999 58998877654
No 98
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=21.51 E-value=72 Score=25.76 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHHHhhCCC-cEEEEEe
Q 033138 1 MAVEFNRQLKERVIKLRTELPE-AAITYVD 29 (126)
Q Consensus 1 ~s~~~N~~L~~~l~~l~~~~~~-~~i~~~D 29 (126)
|+..||...+..+.+|++++|+ ..++..+
T Consensus 242 LS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~ 271 (390)
T KOG0700|consen 242 LSTDHNASNEDEVRRIRSEHPDDPHIVVNK 271 (390)
T ss_pred cChhhccccHHHHHHHHHhCCCCcceEeec
Confidence 5788999999999999999995 4565555
No 99
>PF03466 LysR_substrate: LysR substrate binding domain; InterPro: IPR005119 The structure of this domain is known and is similar to the periplasmic binding proteins []. This domain is found in members of the LysR family of prokaryotic transcriptional regulatory proteins IPR000847 from INTERPRO which share sequence similarities over approximately 280 residues including a putative helix-turn-helix DNA-binding motif at their N terminus.; PDB: 3ONM_B 3FZJ_J 3FXR_B 3N6T_A 3FXQ_A 3FXU_A 3N6U_A 2QSX_B 3HO7_B 1IZ1_B ....
Probab=20.97 E-value=1.6e+02 Score=19.43 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEecc--HHHHHHHHhhhhhCcc
Q 033138 6 NRQLKERVIKLRTELPEAAITYVDVY--ATKYELISNAKTLGYA 47 (126)
Q Consensus 6 N~~L~~~l~~l~~~~~~~~i~~~D~~--~~~~~i~~nP~~yGf~ 47 (126)
...|...+.++++++|++++.+.... .+...+.+.--..||.
T Consensus 18 ~~~l~~~l~~~~~~~P~i~i~~~~~~~~~~~~~l~~g~~Dl~i~ 61 (209)
T PF03466_consen 18 SSLLPPLLAEFRERHPNIRIEIREGDSDELIEALRSGELDLAIT 61 (209)
T ss_dssp HHTHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeccchhhhHHHhcccccEEEE
Confidence 44577889999999999887776554 6666666554555554
No 100
>cd08436 PBP2_LTTR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functi
Probab=20.95 E-value=2e+02 Score=18.50 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEec--cHHHHHHHHhhhhhCc
Q 033138 6 NRQLKERVIKLRTELPEAAITYVDV--YATKYELISNAKTLGY 46 (126)
Q Consensus 6 N~~L~~~l~~l~~~~~~~~i~~~D~--~~~~~~i~~nP~~yGf 46 (126)
+..|...+.++.+++|++++.+... ..+...+.+.--..|+
T Consensus 12 ~~~l~~~l~~~~~~~P~v~i~i~~~~~~~~~~~l~~~~~Dl~i 54 (194)
T cd08436 12 AVDLPELLARFHRRHPGVDIRLRQAGSDDLLAAVREGRLDLAF 54 (194)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEecCCHHHHHHHHHcCCccEEE
Confidence 4567889999999999998888754 4445555555444554
No 101
>PRK09222 isocitrate dehydrogenase; Validated
Probab=20.88 E-value=1.5e+02 Score=24.72 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeccHHHHHHHHhhhhhC
Q 033138 8 QLKERVIKLRTELPEAAITYVDVYATKYELISNAKTLG 45 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~~~~~~i~~nP~~yG 45 (126)
..++..++..++||++++-..=+-.....++.+|+.|.
T Consensus 185 lf~~v~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~FD 222 (482)
T PRK09222 185 LFHKVFDEIAKEYPDIEAEHYIVDIGAARLATNPENFD 222 (482)
T ss_pred HHHHHHHHHHhhCCCceEeeeeHHHHHHHHhcCcccce
Confidence 45566777888999988777767778889999999885
No 102
>cd08440 PBP2_LTTR_like_4 TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse funct
Probab=20.60 E-value=2.5e+02 Score=18.03 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEec--cHHHHHHHHhhhhhCc
Q 033138 6 NRQLKERVIKLRTELPEAAITYVDV--YATKYELISNAKTLGY 46 (126)
Q Consensus 6 N~~L~~~l~~l~~~~~~~~i~~~D~--~~~~~~i~~nP~~yGf 46 (126)
+..|...+..+.+++|++++.+... ..+...+.+.--..|+
T Consensus 12 ~~~l~~~l~~~~~~~p~v~i~i~~~~~~~~~~~l~~g~~D~~i 54 (197)
T cd08440 12 ATLLPPVLAAFRRRHPGIRVRLRDVSAEQVIEAVRSGEVDFGI 54 (197)
T ss_pred hhHHHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHcCCccEEE
Confidence 4567888999999999999888753 4444444443333444
No 103
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.59 E-value=74 Score=25.21 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.3
Q ss_pred CceecCCCChhHHHHHHHHHHHhc
Q 033138 86 KSISWDGVHYTQAANQWVANHTLY 109 (126)
Q Consensus 86 ~y~fwD~~HPT~~~h~~iA~~~~~ 109 (126)
++.--|++|-|.+|-+.+|.++.+
T Consensus 292 rlR~~DGIh~T~~Gkrkla~~~~k 315 (354)
T COG2845 292 RLRAKDGIHFTKEGKRKLAFYLEK 315 (354)
T ss_pred EEeccCCceechhhHHHHHHHHHH
Confidence 455569999999999999998754
No 104
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]
Probab=20.56 E-value=80 Score=21.25 Aligned_cols=25 Identities=8% Similarity=-0.040 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCchhcc
Q 033138 98 AANQWVANHTLYGSLTDPPIPITQA 122 (126)
Q Consensus 98 ~~h~~iA~~~~~~~~~~pp~~~~~~ 122 (126)
..|+-||+++....-.++|+|+.++
T Consensus 30 ~iwk~vaerL~~prr~ra~VnlsKI 54 (122)
T COG1727 30 PIWKDVAERLEKPRRNRAEVNVSKI 54 (122)
T ss_pred HHHHHHHHHHhcccccCCceeHHHH
Confidence 6789999999999988999998765
No 105
>PTZ00062 glutaredoxin; Provisional
Probab=20.56 E-value=1.6e+02 Score=21.43 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecc
Q 033138 8 QLKERVIKLRTELPEAAITYVDVY 31 (126)
Q Consensus 8 ~L~~~l~~l~~~~~~~~i~~~D~~ 31 (126)
++...+.+|.+++|+++|+.+|.-
T Consensus 34 ~m~~vl~~l~~~~~~~~F~~V~~d 57 (204)
T PTZ00062 34 QLMDVCNALVEDFPSLEFYVVNLA 57 (204)
T ss_pred HHHHHHHHHHHHCCCcEEEEEccc
Confidence 567778889889999999999865
No 106
>cd08485 PBP2_ClcR The C-terminal substrate binding domain of LysR-type transcriptional regulator ClcR involved in the chlorocatechol catabolism, contains type 2 periplasmic binding fold. In soil bacterium Pseudomonas putida, the ortho-pathways of catechol and 3-chlorocatechol are central catabolic pathways that convert aromatic and chloroaromaric compounds to tricarboxylic acid (TCA) cycle intermediates. The 3-chlorocatechol-degradative pathway is encoded by clcABD operon, which requires the divergently transcribed clcR and an intermediate of the pathway, 2-chloromuconate, as an inducer for activation. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding th
Probab=20.43 E-value=1.8e+02 Score=19.34 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEe--ccHHHHHHHHhhhhhCcc
Q 033138 6 NRQLKERVIKLRTELPEAAITYVD--VYATKYELISNAKTLGYA 47 (126)
Q Consensus 6 N~~L~~~l~~l~~~~~~~~i~~~D--~~~~~~~i~~nP~~yGf~ 47 (126)
+..|...+.++++++|++++-+.. .......+.+.--..||.
T Consensus 13 ~~~l~~~l~~~~~~~P~i~l~~~~~~~~~~~~~l~~~~~D~~i~ 56 (198)
T cd08485 13 LHTLPLLLRQLLSVAPSATVSLTQMSKNRQIEALDAGTIDIGFG 56 (198)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHcCCccEEEe
Confidence 345778899999999999988875 345555555544444543
No 107
>cd08431 PBP2_HupR The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, p
Probab=20.40 E-value=1.6e+02 Score=19.23 Aligned_cols=40 Identities=15% Similarity=-0.007 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEec--cHHHHHHHHhhhhhCc
Q 033138 7 RQLKERVIKLRTELPEAAITYVDV--YATKYELISNAKTLGY 46 (126)
Q Consensus 7 ~~L~~~l~~l~~~~~~~~i~~~D~--~~~~~~i~~nP~~yGf 46 (126)
..|...+.++++++|++++.+.+. ......+.+.--..|+
T Consensus 13 ~~l~~~l~~~~~~~P~v~i~i~~~~~~~~~~~l~~g~~D~~i 54 (195)
T cd08431 13 QPLYPLIAEFYQLNKATRIRLSEEVLGGTWDALASGRADLVI 54 (195)
T ss_pred HHHHHHHHHHHHHCCCCceEEEEeccchHHHHHhCCCCCEEE
Confidence 457788999999999998887754 4556666555444554
Done!