Query 033139
Match_columns 126
No_of_seqs 119 out of 1022
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:53:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_S 40S ribosomal protein S 100.0 1.1E-51 3.6E-56 305.2 9.8 123 1-123 1-125 (146)
2 3iz6_M 40S ribosomal protein S 100.0 1E-51 3.5E-56 307.0 8.9 123 1-123 1-123 (152)
3 2xzm_M RPS18E; ribosome, trans 100.0 1.7E-50 5.7E-55 301.3 5.8 123 1-123 1-125 (155)
4 3j20_O 30S ribosomal protein S 100.0 4.2E-50 1.4E-54 297.2 4.5 117 7-123 2-118 (148)
5 2vqe_M 30S ribosomal protein S 100.0 2.6E-33 8.8E-38 202.5 5.6 90 12-123 1-90 (126)
6 3r8n_M 30S ribosomal protein S 100.0 5.4E-32 1.9E-36 192.7 7.0 88 13-123 1-88 (114)
7 3bbn_M Ribosomal protein S13; 99.9 1.3E-28 4.3E-33 181.3 -3.4 85 5-123 33-123 (145)
8 1mu5_A Type II DNA topoisomera 96.7 0.00092 3.2E-08 56.4 3.7 50 24-73 254-303 (471)
9 3u6p_A Formamidopyrimidine-DNA 96.3 0.0037 1.3E-07 49.3 4.2 51 22-72 154-207 (273)
10 1k82_A Formamidopyrimidine-DNA 96.2 0.0043 1.5E-07 48.8 4.2 51 22-72 149-202 (268)
11 1ee8_A MUTM (FPG) protein; bet 96.2 0.0043 1.5E-07 48.8 4.0 51 22-72 142-195 (266)
12 3w0f_A Endonuclease 8-like 3; 96.1 0.0052 1.8E-07 49.2 4.2 51 23-73 174-227 (287)
13 3twl_A Formamidopyrimidine-DNA 96.1 0.0052 1.8E-07 49.4 4.2 51 22-72 167-220 (310)
14 1k3x_A Endonuclease VIII; hydr 95.9 0.0064 2.2E-07 47.6 4.1 50 23-72 150-202 (262)
15 2xzf_A Formamidopyrimidine-DNA 95.9 0.0069 2.3E-07 47.6 4.0 51 22-72 152-205 (271)
16 3vk8_A Probable formamidopyrim 95.7 0.0088 3E-07 47.7 4.0 51 22-72 153-207 (295)
17 2zbk_B Type 2 DNA topoisomeras 94.2 0.04 1.4E-06 47.2 4.3 47 27-73 256-302 (530)
18 3fut_A Dimethyladenosine trans 94.2 0.04 1.4E-06 43.0 3.9 63 8-73 207-269 (271)
19 1kft_A UVRC, excinuclease ABC 93.7 0.033 1.1E-06 35.4 2.1 34 16-49 12-45 (78)
20 1qyr_A KSGA, high level kasuga 91.9 0.14 4.7E-06 39.3 3.8 56 9-72 194-249 (252)
21 1x2i_A HEF helicase/nuclease; 91.7 0.13 4.4E-06 31.7 2.9 50 25-74 11-69 (75)
22 2a1j_A DNA repair endonuclease 91.7 0.064 2.2E-06 33.2 1.4 37 29-67 5-41 (63)
23 3arc_U Photosystem II 12 kDa e 91.4 0.21 7.3E-06 33.7 3.9 51 23-73 21-74 (97)
24 3uzu_A Ribosomal RNA small sub 89.6 0.12 3.9E-06 40.4 1.4 58 8-73 217-274 (279)
25 1z00_A DNA excision repair pro 89.5 0.12 4.2E-06 33.4 1.3 50 25-74 16-74 (89)
26 2a1j_B DNA excision repair pro 89.4 0.13 4.5E-06 33.5 1.4 25 25-49 29-53 (91)
27 3ftd_A Dimethyladenosine trans 89.1 0.34 1.2E-05 36.9 3.7 54 8-73 193-246 (249)
28 1s5l_U Photosystem II 12 kDa e 88.4 0.55 1.9E-05 33.7 4.2 60 23-85 58-122 (134)
29 3tqs_A Ribosomal RNA small sub 88.1 0.24 8.1E-06 38.1 2.3 56 8-71 199-254 (255)
30 2duy_A Competence protein come 87.9 0.25 8.4E-06 31.0 1.9 45 25-69 24-71 (75)
31 1tdh_A NEI endonuclease VIII-l 86.5 0.059 2E-06 44.3 -2.1 40 23-62 158-200 (364)
32 3gru_A Dimethyladenosine trans 84.3 0.42 1.4E-05 37.6 1.9 63 9-73 215-287 (295)
33 2edu_A Kinesin-like protein KI 83.4 1.4 4.8E-05 28.9 4.0 43 27-69 39-88 (98)
34 1ixr_A Holliday junction DNA h 81.9 0.18 6.1E-06 37.8 -1.1 59 15-73 59-129 (191)
35 3fhg_A Mjogg, N-glycosylase/DN 81.1 0.92 3.1E-05 33.8 2.7 44 25-72 114-157 (207)
36 1z00_B DNA repair endonuclease 80.8 0.66 2.2E-05 30.4 1.5 43 23-67 13-55 (84)
37 3q8k_A Flap endonuclease 1; he 80.2 0.67 2.3E-05 37.3 1.7 35 6-49 219-253 (341)
38 2ztd_A Holliday junction ATP-d 79.5 0.25 8.6E-06 37.7 -1.0 60 14-73 74-145 (212)
39 3n0u_A Probable N-glycosylase/ 79.4 0.96 3.3E-05 34.4 2.3 42 26-71 127-169 (219)
40 1cuk_A RUVA protein; DNA repai 78.8 0.26 8.9E-06 37.2 -1.1 59 15-73 60-130 (203)
41 2gqf_A Hypothetical protein HI 78.7 1.9 6.6E-05 34.6 4.0 49 22-73 279-327 (401)
42 3fhf_A Mjogg, N-glycosylase/DN 78.6 0.96 3.3E-05 34.3 2.0 43 26-72 122-165 (214)
43 3v76_A Flavoprotein; structura 78.2 2.2 7.5E-05 34.6 4.2 49 22-73 298-346 (417)
44 2nrt_A Uvrabc system protein C 77.5 0.77 2.6E-05 35.3 1.2 39 27-67 167-205 (220)
45 3ory_A Flap endonuclease 1; hy 77.0 0.88 3E-05 37.0 1.5 59 6-74 237-300 (363)
46 1vq8_Y 50S ribosomal protein L 76.7 0.51 1.7E-05 36.6 0.0 38 28-66 15-52 (241)
47 1qa6_A Ribosomal protein L11; 74.1 9.4 0.00032 23.8 5.5 57 38-117 3-65 (67)
48 1qam_A ERMC' methyltransferase 73.5 2.2 7.4E-05 31.9 2.8 31 43-73 211-241 (244)
49 2eo2_A Adult MALE hypothalamus 71.4 4.1 0.00014 26.1 3.3 25 45-70 37-61 (71)
50 2ztd_A Holliday junction ATP-d 71.3 1.4 5E-05 33.4 1.4 22 28-49 123-144 (212)
51 2bgw_A XPF endonuclease; hydro 71.3 1.5 5.1E-05 32.5 1.4 24 26-49 160-183 (219)
52 3b0x_A DNA polymerase beta fam 69.7 1.7 5.8E-05 37.0 1.6 28 24-51 89-116 (575)
53 1pu6_A 3-methyladenine DNA gly 68.7 3 0.0001 31.3 2.6 41 26-70 119-159 (218)
54 1hc8_A Ribosomal protein L11; 68.0 10 0.00035 24.2 4.8 60 38-120 8-73 (76)
55 2fmp_A DNA polymerase beta; nu 68.0 2 6.7E-05 34.5 1.5 44 26-70 96-143 (335)
56 2abk_A Endonuclease III; DNA-r 66.7 1.9 6.7E-05 31.9 1.2 23 26-48 107-129 (211)
57 2zkr_i 60S ribosomal protein L 66.5 13 0.00044 27.2 5.6 63 36-121 73-143 (165)
58 2bcq_A DNA polymerase lambda; 65.7 2.1 7.3E-05 34.3 1.3 28 24-52 92-119 (335)
59 3c65_A Uvrabc system protein C 65.5 1.3 4.4E-05 34.1 0.0 41 25-67 170-210 (226)
60 2ihm_A POL MU, DNA polymerase 65.4 2.4 8.1E-05 34.4 1.5 42 28-70 102-147 (360)
61 1kea_A Possible G-T mismatches 65.1 3.8 0.00013 30.6 2.6 41 27-71 114-154 (221)
62 2h56_A DNA-3-methyladenine gly 64.0 2.3 8E-05 32.2 1.2 33 25-57 135-168 (233)
63 1kg2_A A/G-specific adenine gl 63.8 2.8 9.5E-05 31.4 1.6 46 19-71 103-148 (225)
64 1cuk_A RUVA protein; DNA repai 63.7 2.8 9.6E-05 31.4 1.6 20 29-48 109-128 (203)
65 1ul1_X Flap endonuclease-1; pr 63.7 2.4 8E-05 34.4 1.2 34 7-49 220-253 (379)
66 1jms_A Terminal deoxynucleotid 63.7 2.6 9.1E-05 34.4 1.5 43 27-70 120-167 (381)
67 1ixr_A Holliday junction DNA h 63.4 2.9 9.9E-05 31.1 1.6 21 29-49 108-128 (191)
68 4ecq_A DNA polymerase ETA; tra 63.2 5.8 0.0002 32.6 3.5 38 28-65 253-290 (435)
69 1nd9_A Translation initiation 62.8 3.1 0.00011 23.2 1.3 41 30-71 8-48 (49)
70 1mms_A Protein (ribosomal prot 62.6 14 0.00048 26.3 5.0 62 37-121 71-138 (140)
71 2w9m_A Polymerase X; SAXS, DNA 62.3 3 0.0001 35.6 1.7 27 24-51 93-119 (578)
72 1orn_A Endonuclease III; DNA r 62.3 3.1 0.00011 31.3 1.6 25 26-50 111-136 (226)
73 3vdp_A Recombination protein R 62.0 3.6 0.00012 31.5 1.9 41 25-73 23-63 (212)
74 2dn0_A Zinc fingers and homeob 61.9 5.2 0.00018 24.8 2.4 24 50-73 6-29 (76)
75 4b21_A Probable DNA-3-methylad 61.5 2.7 9.4E-05 31.9 1.2 34 25-58 147-181 (232)
76 2yg9_A DNA-3-methyladenine gly 61.2 2.8 9.6E-05 31.6 1.2 34 25-58 143-177 (225)
77 1a76_A Flap endonuclease-1 pro 60.7 3.5 0.00012 32.5 1.7 34 7-49 212-245 (326)
78 3s6i_A DNA-3-methyladenine gly 60.5 2.9 0.0001 31.6 1.2 33 26-58 137-170 (228)
79 2dmp_A Zinc fingers and homeob 60.0 4.3 0.00015 26.2 1.8 20 54-73 15-34 (89)
80 1mpg_A ALKA, 3-methyladenine D 60.0 3 0.0001 32.3 1.2 27 26-52 205-231 (282)
81 1b43_A Protein (FEN-1); nuclea 60.0 2.9 9.8E-05 33.2 1.1 35 7-49 224-258 (340)
82 1rxw_A Flap structure-specific 59.7 3.2 0.00011 32.9 1.3 34 7-49 223-256 (336)
83 3i0w_A 8-oxoguanine-DNA-glycos 59.6 2.8 9.6E-05 32.8 1.0 43 25-71 208-251 (290)
84 4e9f_A Methyl-CPG-binding doma 59.0 3.7 0.00013 29.7 1.5 34 10-46 89-122 (161)
85 2a1j_B DNA excision repair pro 58.8 4.6 0.00016 25.9 1.8 21 29-49 65-85 (91)
86 2jhn_A ALKA, 3-methyladenine D 58.7 3.2 0.00011 32.4 1.2 32 26-58 208-240 (295)
87 2izo_A FEN1, flap structure-sp 58.7 3.6 0.00012 32.8 1.5 35 7-49 221-255 (346)
88 2i5h_A Hypothetical protein AF 56.3 4.6 0.00016 30.8 1.6 31 29-59 133-163 (205)
89 3iz5_J 60S ribosomal protein L 56.1 28 0.00096 25.4 5.8 61 37-120 75-143 (166)
90 3exc_X Uncharacterized protein 56.0 2.7 9.4E-05 27.6 0.3 53 9-73 1-56 (91)
91 1exn_A 5'-exonuclease, 5'-nucl 56.0 4 0.00014 32.2 1.3 18 32-49 207-224 (290)
92 1vdd_A Recombination protein R 55.1 5.4 0.00018 30.8 1.9 41 24-72 8-48 (228)
93 2ftc_G L11MT, MRP-L11, 39S rib 55.0 32 0.0011 24.5 5.9 64 37-121 72-143 (145)
94 3a03_A T-cell leukemia homeobo 55.0 4.6 0.00016 23.5 1.2 14 59-72 4-17 (56)
95 1zq9_A Probable dimethyladenos 54.9 12 0.00039 28.5 3.8 33 40-73 247-279 (285)
96 2i0z_A NAD(FAD)-utilizing dehy 54.8 12 0.0004 30.0 3.9 38 36-73 331-368 (447)
97 2djn_A Homeobox protein DLX-5; 54.3 6.4 0.00022 23.9 1.8 17 57-73 12-28 (70)
98 4gfj_A Topoisomerase V; helix- 54.3 5.1 0.00017 34.4 1.7 42 27-68 467-516 (685)
99 2da5_A Zinc fingers and homeob 54.0 7.2 0.00024 24.1 2.0 19 55-73 10-28 (75)
100 2xhi_A N-glycosylase/DNA lyase 53.3 4.1 0.00014 33.0 1.0 24 25-48 250-273 (360)
101 2hdd_A Protein (engrailed home 52.8 6.3 0.00022 23.2 1.6 17 57-73 8-24 (61)
102 3qe9_Y Exonuclease 1; exonucle 52.5 5.3 0.00018 32.2 1.5 35 6-49 212-246 (352)
103 2cue_A Paired box protein PAX6 52.3 7 0.00024 24.4 1.8 17 57-73 12-28 (80)
104 3fsp_A A/G-specific adenine gl 50.8 6.1 0.00021 31.6 1.6 29 17-48 110-138 (369)
105 2kp7_A Crossover junction endo 50.5 6.9 0.00024 25.5 1.6 19 30-48 60-78 (87)
106 1yz8_P Pituitary homeobox 2; D 50.3 8.3 0.00028 23.2 1.9 17 57-73 8-24 (68)
107 2ecb_A Zinc fingers and homeob 50.1 7.7 0.00026 25.4 1.8 19 55-73 14-32 (89)
108 3j21_H 50S ribosomal protein L 49.8 35 0.0012 24.8 5.5 61 38-121 71-137 (164)
109 2cra_A Homeobox protein HOX-B1 49.2 6.1 0.00021 24.0 1.1 17 57-73 12-28 (70)
110 3a02_A Homeobox protein arista 48.8 6.5 0.00022 23.1 1.2 14 59-72 6-19 (60)
111 2vi6_A Homeobox protein nanog; 48.8 6.5 0.00022 23.2 1.2 16 58-73 9-24 (62)
112 2ee7_A Sperm flagellar protein 48.7 7.3 0.00025 27.2 1.6 34 57-93 10-43 (127)
113 2da2_A Alpha-fetoprotein enhan 48.6 6.5 0.00022 23.8 1.2 16 58-73 13-28 (70)
114 2da1_A Alpha-fetoprotein enhan 48.5 6.6 0.00022 23.7 1.2 17 57-73 12-28 (70)
115 2dmq_A LIM/homeobox protein LH 48.4 6.5 0.00022 24.4 1.2 16 58-73 13-28 (80)
116 2e1o_A Homeobox protein PRH; D 48.3 6.6 0.00023 23.8 1.2 16 58-73 13-28 (70)
117 1wh7_A ZF-HD homeobox family p 48.0 11 0.00037 23.9 2.2 13 58-70 23-35 (80)
118 2hi3_A Homeodomain-only protei 47.8 9 0.00031 23.4 1.8 15 58-72 8-22 (73)
119 2dmt_A Homeobox protein BARH-l 47.7 6.8 0.00023 24.5 1.2 16 58-73 23-38 (80)
120 2dms_A Homeobox protein OTX2; 47.6 7 0.00024 24.3 1.2 16 58-73 13-28 (80)
121 1ahd_P Antennapedia protein mu 47.5 7 0.00024 23.7 1.2 16 58-73 8-23 (68)
122 1bgx_T TAQ DNA polymerase; DNA 46.6 5.3 0.00018 35.8 0.7 35 6-49 176-212 (832)
123 2bcq_A DNA polymerase lambda; 46.6 6 0.0002 31.6 0.9 42 29-72 58-99 (335)
124 1zq3_P PRD-4, homeotic bicoid 46.5 17 0.00058 21.8 2.9 16 58-73 8-23 (68)
125 1cyi_A Cytochrome C6, cytochro 46.5 4.8 0.00016 24.6 0.3 25 57-83 65-89 (90)
126 1bw5_A ISL-1HD, insulin gene e 46.4 12 0.00042 22.2 2.2 16 58-73 9-24 (66)
127 1uhs_A HOP, homeodomain only p 45.9 10 0.00035 23.1 1.8 15 58-72 7-21 (72)
128 3e1s_A Exodeoxyribonuclease V, 45.1 4.6 0.00016 34.3 0.1 26 28-53 44-69 (574)
129 1c6r_A Cytochrome C6; electron 44.7 7.2 0.00025 23.6 0.9 17 57-73 66-82 (89)
130 1im4_A DBH; DNA polymerase PAL 44.7 12 0.00041 27.9 2.3 29 29-61 185-213 (221)
131 2k40_A Homeobox expressed in E 44.4 12 0.0004 22.4 1.9 14 59-72 8-21 (67)
132 1jx4_A DNA polymerase IV (fami 44.1 16 0.00055 28.7 3.1 37 29-66 179-215 (352)
133 3n5n_X A/G-specific adenine DN 43.8 9.1 0.00031 30.1 1.6 49 17-72 120-169 (287)
134 1nk2_P Homeobox protein VND; h 43.2 8.8 0.0003 23.8 1.2 16 58-73 15-30 (77)
135 2da4_A Hypothetical protein DK 41.2 9.5 0.00032 23.7 1.1 16 58-73 14-29 (80)
136 1x2n_A Homeobox protein pknox1 40.9 19 0.00066 21.8 2.5 16 57-72 12-27 (73)
137 2kt0_A Nanog, homeobox protein 40.7 10 0.00035 23.7 1.2 16 58-73 28-43 (84)
138 1ci4_A Protein (barrier-TO-aut 40.6 16 0.00055 24.3 2.2 24 28-52 18-41 (89)
139 2hnh_A DNA polymerase III alph 40.4 23 0.00077 32.2 3.8 47 24-70 829-885 (910)
140 2r5y_A Homeotic protein sex co 40.2 14 0.00049 23.3 1.9 18 56-73 32-49 (88)
141 2da7_A Zinc finger homeobox pr 40.0 7.2 0.00025 24.9 0.4 30 58-88 29-58 (71)
142 1mnm_C Protein (MAT alpha-2 tr 39.8 15 0.00052 23.2 1.9 18 56-73 31-48 (87)
143 3bqs_A Uncharacterized protein 39.7 15 0.00052 24.2 2.0 23 29-52 5-27 (93)
144 1vq8_I 50S ribosomal protein L 38.5 45 0.0015 24.2 4.5 62 37-121 68-135 (162)
145 2l9r_A Homeobox protein NKX-3. 38.4 12 0.0004 23.2 1.2 16 58-73 10-25 (69)
146 3bbo_K Ribosomal protein L11; 38.4 42 0.0014 25.7 4.5 62 37-121 143-210 (224)
147 3im1_A Protein SNU246, PRE-mRN 38.2 10 0.00036 29.6 1.1 43 29-72 158-211 (328)
148 3mfi_A DNA polymerase ETA; DNA 38.2 9.8 0.00033 32.2 1.0 29 28-56 307-335 (520)
149 3r8s_Y 50S ribosomal protein L 38.1 16 0.00054 22.4 1.7 54 56-120 6-59 (63)
150 1b22_A DNA repair protein RAD5 37.9 16 0.00055 24.9 1.9 20 29-48 59-78 (114)
151 3bq0_A POL IV, DBH, DNA polyme 37.8 16 0.00053 28.8 2.1 35 30-65 181-215 (354)
152 1fjl_A Paired protein; DNA-bin 37.6 12 0.00041 23.3 1.2 17 57-73 23-39 (81)
153 1i4w_A Mitochondrial replicati 37.4 11 0.00037 30.4 1.1 61 9-73 271-332 (353)
154 1b72_A Protein (homeobox prote 37.4 17 0.00057 23.5 1.9 18 56-73 38-55 (97)
155 3a01_A Homeodomain-containing 37.3 12 0.00041 24.1 1.2 17 57-73 22-38 (93)
156 3doa_A Fibrinogen binding prot 37.0 14 0.00049 28.7 1.8 26 26-51 190-217 (288)
157 4dez_A POL IV 1, DNA polymeras 36.8 15 0.00051 28.9 1.8 36 29-65 179-214 (356)
158 2c8m_A Lipoate-protein ligase 36.7 23 0.0008 26.7 2.9 41 40-84 214-254 (262)
159 1gks_A Cytochrome C551; haloph 36.3 23 0.00079 21.2 2.3 17 57-73 60-76 (78)
160 1kx2_A Mono-heme C-type cytoch 36.2 26 0.00091 21.0 2.6 17 57-73 63-79 (81)
161 3sgi_A DNA ligase; HET: DNA AM 35.7 7.7 0.00026 33.9 0.0 18 32-49 533-550 (615)
162 1ls9_A Cytochrome C6; omega lo 35.7 12 0.00041 22.8 0.9 17 57-73 68-84 (91)
163 2d0s_A Cytochrome C, cytochrom 35.5 27 0.00092 20.6 2.5 17 57-73 61-77 (79)
164 2ihm_A POL MU, DNA polymerase 35.3 5.8 0.0002 32.0 -0.8 31 29-59 62-92 (360)
165 1puf_B PRE-B-cell leukemia tra 35.2 27 0.00092 21.1 2.5 14 58-71 7-20 (73)
166 2h1r_A Dimethyladenosine trans 34.6 36 0.0012 25.9 3.7 32 41-73 260-291 (299)
167 1cc5_A Cytochrome C5; electron 34.2 29 0.00098 21.3 2.6 16 58-73 67-82 (83)
168 1yub_A Ermam, rRNA methyltrans 34.0 22 0.00076 25.9 2.3 29 44-72 211-239 (245)
169 3f2b_A DNA-directed DNA polyme 33.9 16 0.00055 33.8 1.8 58 13-70 943-1015(1041)
170 4f4y_A POL IV, DNA polymerase 33.5 35 0.0012 27.1 3.6 37 28-65 179-215 (362)
171 2ly9_A Zinc fingers and homeob 32.8 27 0.00092 21.1 2.2 15 58-72 12-26 (74)
172 2ecc_A Homeobox and leucine zi 32.6 26 0.00088 22.2 2.1 17 57-73 8-24 (76)
173 2fmp_A DNA polymerase beta; nu 32.2 18 0.00061 28.8 1.6 21 29-49 58-78 (335)
174 3dr0_A Cytochrome C6; photosyn 31.9 14 0.00047 22.2 0.7 17 57-73 70-86 (93)
175 1vqz_A Lipoate-protein ligase, 31.8 38 0.0013 26.8 3.5 47 39-90 212-258 (341)
176 3nau_A Zinc fingers and homeob 31.7 12 0.00041 23.4 0.4 29 59-88 29-57 (66)
177 3osn_A DNA polymerase IOTA; ho 31.6 15 0.00052 30.0 1.1 35 30-65 236-270 (420)
178 2bgw_A XPF endonuclease; hydro 31.6 19 0.00066 26.3 1.6 21 29-49 195-215 (219)
179 2o3f_A Putative HTH-type trans 31.6 24 0.00081 23.4 1.9 24 29-52 44-67 (111)
180 1c75_A Cytochrome C-553; heme, 31.1 36 0.0012 19.7 2.5 20 54-73 50-69 (71)
181 1jms_A Terminal deoxynucleotid 31.1 9.4 0.00032 31.1 -0.2 33 29-61 81-113 (381)
182 1dgs_A DNA ligase; AMP complex 30.6 13 0.00044 32.8 0.5 34 32-65 445-478 (667)
183 1dd4_C 50S ribosomal protein L 30.3 23 0.00078 19.9 1.4 24 56-81 10-33 (40)
184 2zxy_A Cytochrome C552, cytoch 30.1 28 0.00096 20.5 2.0 17 57-73 69-85 (87)
185 2k9n_A MYB24; R2R3 domain, DNA 30.1 66 0.0022 20.8 4.0 42 37-82 32-75 (107)
186 1xmk_A Double-stranded RNA-spe 29.9 18 0.00062 23.1 1.0 37 29-69 16-52 (79)
187 1c53_A Cytochrome C553; electr 29.7 28 0.00097 20.6 1.9 17 57-73 62-78 (79)
188 2da3_A Alpha-fetoprotein enhan 29.4 14 0.00048 22.7 0.5 29 59-88 42-70 (80)
189 2exv_A Cytochrome C-551; alpha 29.2 39 0.0013 19.9 2.5 20 54-73 61-80 (82)
190 2llk_A Cyclin-D-binding MYB-li 28.2 38 0.0013 21.2 2.4 30 49-82 16-45 (73)
191 1yu8_X Villin; alpha helix, 3- 28.1 14 0.00047 23.2 0.2 37 48-85 22-58 (67)
192 1du6_A PBX1, homeobox protein 27.8 18 0.00062 21.3 0.7 30 58-88 30-59 (64)
193 3k2a_A Homeobox protein MEIS2; 27.6 42 0.0014 20.1 2.4 10 79-88 45-54 (67)
194 3ph2_B Cytochrome C6; photosyn 27.6 41 0.0014 19.7 2.4 17 57-73 64-80 (86)
195 3iwf_A Transcription regulator 27.4 30 0.001 22.9 1.8 22 30-51 41-62 (107)
196 2owo_A DNA ligase; protein-DNA 27.2 25 0.00084 31.0 1.7 36 31-66 449-484 (671)
197 1ayg_A Cytochrome C-552; elect 26.9 42 0.0014 19.8 2.4 20 54-73 59-78 (80)
198 3rkq_A Homeobox protein NKX-2. 26.6 18 0.00061 20.6 0.5 29 59-88 27-55 (58)
199 4hl7_A Naprtase, nicotinate ph 26.3 51 0.0018 27.5 3.4 35 39-73 303-341 (446)
200 2lmt_A Calmodulin-related prot 26.1 33 0.0011 22.5 1.9 17 56-72 1-17 (148)
201 3dmi_A Cytochrome C6; electron 26.1 45 0.0015 19.7 2.4 16 58-73 66-81 (88)
202 2d5v_A Hepatocyte nuclear fact 26.0 22 0.00074 25.1 1.0 20 54-73 99-118 (164)
203 1whz_A Hypothetical protein; a 25.8 21 0.00073 21.5 0.8 17 35-51 47-63 (70)
204 3ivp_A Putative transposon-rel 25.8 68 0.0023 20.7 3.4 19 35-53 51-69 (126)
205 2w9m_A Polymerase X; SAXS, DNA 25.8 17 0.00059 30.8 0.5 44 29-73 132-175 (578)
206 2ce0_A Cytochrome C6; chloropl 25.7 16 0.00054 22.8 0.2 17 57-73 77-93 (105)
207 2dmu_A Homeobox protein goosec 25.7 19 0.00064 21.6 0.5 16 58-73 13-28 (70)
208 3i5g_C Myosin catalytic light 25.6 44 0.0015 22.7 2.5 16 57-72 1-16 (159)
209 4a18_B RPL39, ribosomal protei 25.6 38 0.0013 20.2 1.9 38 64-103 10-49 (52)
210 2dmn_A Homeobox protein TGIF2L 25.6 67 0.0023 20.0 3.2 18 55-72 10-27 (83)
211 3u5e_l L46, YL40, 60S ribosoma 25.4 44 0.0015 19.9 2.1 38 64-103 10-49 (51)
212 2yfr_A Levansucrase, inulosucr 25.3 32 0.0011 29.8 2.0 54 39-112 38-91 (571)
213 1ig7_A Homeotic protein MSX-1; 25.0 18 0.0006 20.8 0.3 14 59-72 7-20 (58)
214 1akh_A Protein (mating-type pr 25.0 19 0.00066 20.9 0.5 14 59-72 12-25 (61)
215 3eyi_A Z-DNA-binding protein 1 25.0 27 0.00093 22.3 1.2 36 30-69 16-51 (72)
216 2e19_A Transcription factor 8; 24.9 20 0.00068 21.6 0.5 29 59-88 28-56 (64)
217 1cno_A Cytochrome C552; electr 24.9 50 0.0017 19.8 2.5 17 57-73 65-81 (87)
218 1a56_A C-551, ferricytochrome 24.6 35 0.0012 20.2 1.7 17 57-73 63-79 (81)
219 1jgg_A Segmentation protein EV 24.6 20 0.00067 20.8 0.5 14 59-72 8-21 (60)
220 1k61_A Mating-type protein alp 24.5 17 0.00059 21.1 0.2 10 79-88 45-54 (60)
221 1gdv_A Cytochrome C6; RED ALGA 24.3 52 0.0018 19.2 2.4 16 58-73 64-79 (85)
222 3cu4_A Cytochrome C family pro 24.2 51 0.0018 19.5 2.4 16 58-73 67-82 (85)
223 1wh5_A ZF-HD homeobox family p 24.0 22 0.00076 22.3 0.6 16 58-73 23-38 (80)
224 1ffk_Y Ribosomal protein L39E; 24.0 37 0.0013 20.1 1.6 37 65-103 9-47 (49)
225 1f1f_A Cytochrome C6; heme, pr 23.9 52 0.0018 19.4 2.4 17 57-73 67-83 (89)
226 1x41_A Transcriptional adaptor 23.9 77 0.0026 18.4 3.1 31 49-82 1-31 (60)
227 3b0x_A DNA polymerase beta fam 23.8 33 0.0011 29.0 1.9 43 30-73 130-172 (575)
228 1wve_C 4-cresol dehydrogenase 23.6 69 0.0024 19.0 2.9 17 57-73 56-72 (80)
229 2hue_C Histone H4; mini beta s 23.6 78 0.0027 20.0 3.3 33 31-66 6-38 (84)
230 1jr2_A Uroporphyrinogen-III sy 23.6 63 0.0021 24.2 3.3 32 31-64 115-146 (286)
231 3egv_B 50S ribosomal protein L 23.5 19 0.00066 25.8 0.3 36 37-72 70-111 (146)
232 2q0z_X Protein Pro2281; SEC63, 23.4 27 0.00091 27.4 1.1 43 29-72 162-215 (339)
233 3gqc_A DNA repair protein REV1 23.3 43 0.0015 28.2 2.4 38 28-66 315-352 (504)
234 3kkc_A TETR family transcripti 23.1 32 0.0011 22.6 1.3 28 32-59 26-53 (177)
235 2l7z_A Homeobox protein HOX-A1 23.0 29 0.001 21.0 1.1 16 58-73 13-28 (73)
236 3cp5_A Cytochrome C; electron 22.6 1.2E+02 0.0042 19.1 4.2 22 52-73 98-119 (124)
237 3bbo_Z Ribosomal protein L29; 22.6 26 0.00089 25.9 0.8 55 55-120 69-123 (173)
238 4dpp_A DHDPS 2, dihydrodipicol 22.5 1.2E+02 0.0042 24.4 4.9 57 37-96 295-354 (360)
239 1ujs_A Actin-binding LIM prote 22.4 15 0.00052 24.3 -0.4 35 48-83 37-71 (88)
240 2r6f_A Excinuclease ABC subuni 22.4 52 0.0018 30.2 3.0 31 40-70 338-368 (972)
241 1j03_A Putative steroid bindin 22.4 1E+02 0.0035 20.2 3.8 31 42-72 55-88 (102)
242 2h1k_A IPF-1, pancreatic and d 22.1 24 0.00083 20.7 0.5 16 58-73 9-24 (63)
243 3ppb_A Putative TETR family tr 21.9 35 0.0012 22.5 1.3 24 32-55 23-46 (195)
244 3sj5_A Methyl-accepting chemot 21.9 69 0.0024 23.1 3.1 42 37-80 18-62 (188)
245 3os4_A Naprtase, nicotinate ph 21.7 71 0.0024 26.3 3.4 35 39-73 293-331 (407)
246 2zzs_A Cytochrome C554; C-type 21.6 61 0.0021 19.9 2.5 17 57-73 85-101 (103)
247 3dp5_A OMCF, cytochrome C fami 21.6 58 0.002 20.4 2.4 16 58-73 81-96 (99)
248 2iu5_A DHAS, YCEG, HTH-type dh 21.4 42 0.0014 22.6 1.7 32 33-64 28-60 (195)
249 3qkx_A Uncharacterized HTH-typ 21.4 36 0.0012 22.4 1.4 23 32-54 22-44 (188)
250 1ftt_A TTF-1 HD, thyroid trans 21.2 25 0.00086 21.0 0.5 14 59-72 9-22 (68)
251 3mab_A Uncharacterized protein 21.1 51 0.0017 21.6 2.0 30 29-59 5-34 (93)
252 1w2l_A Cytochrome oxidase subu 21.1 51 0.0018 19.9 2.0 17 57-73 81-97 (99)
253 3j21_f 50S ribosomal protein L 21.0 33 0.0011 20.4 0.9 38 64-103 10-49 (51)
254 3m5v_A DHDPS, dihydrodipicolin 21.0 1.4E+02 0.0048 22.9 4.9 37 37-73 255-295 (301)
255 1cch_A Cytochrome C551; electr 20.9 63 0.0022 18.8 2.3 20 54-73 61-80 (82)
256 2zet_C Melanophilin; complex, 20.3 1.1E+02 0.0038 21.7 3.8 21 53-73 11-31 (153)
257 1vq8_V 50S ribosomal protein L 20.2 18 0.0006 22.7 -0.4 53 56-119 9-62 (71)
258 3nrg_A TETR family transcripti 20.1 52 0.0018 22.2 2.0 33 32-64 27-60 (217)
259 1uj2_A Uridine-cytidine kinase 20.1 56 0.0019 23.7 2.3 32 19-50 16-48 (252)
260 2m0c_A Homeobox protein arista 20.0 28 0.00097 20.9 0.5 11 79-89 53-63 (75)
No 1
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=100.00 E-value=1.1e-51 Score=305.21 Aligned_cols=123 Identities=60% Similarity=0.994 Sum_probs=119.3
Q ss_pred CCCCCcc--ccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCcc
Q 033139 1 MSLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFK 78 (126)
Q Consensus 1 ~~~~~~~--~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~ 78 (126)
|+++.++ +||||+||+|||||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|+++|++|.+|+
T Consensus 1 ~~~~~~~~~~~~~~~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ 80 (146)
T 3u5c_S 1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYK 80 (146)
T ss_dssp -CCCCCCCSCCCSSBCCTTSCBCSSSCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTT
T ss_pred CCccCCCHHHhhhhhhhcCccCCCCcchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccC
Confidence 7888776 89999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred CChhhhhccccccCCccceeehhhHHHHHHHHHHHHHhcccceee
Q 033139 79 IPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRYGLVV 123 (126)
Q Consensus 79 iP~w~~nr~~d~~tg~~~h~i~~dL~~~~~~dI~rl~~I~sy~~~ 123 (126)
+|+||+|||||++||+++|++|+||++++++||+||++|+||||+
T Consensus 81 iP~w~lNR~kD~~~G~~~~lie~dL~~~~~~dI~RL~~I~~yRG~ 125 (146)
T 3u5c_S 81 IPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGI 125 (146)
T ss_dssp CCSTTCTBCSCSSSCCCBCCCTHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ccHHHhhhhhcccccchheeehHHHHHHHHHhhHHHHhhceeeee
Confidence 999999999999999999999999999999999999999999985
No 2
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-51 Score=307.03 Aligned_cols=123 Identities=83% Similarity=1.244 Sum_probs=121.3
Q ss_pred CCCCCccccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCC
Q 033139 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIP 80 (126)
Q Consensus 1 ~~~~~~~~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~iP 80 (126)
|+++.+|+||||+||+|||||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|+++|++|.+|++|
T Consensus 1 ~~~~~~~~~~~m~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ip 80 (152)
T 3iz6_M 1 MSLIAGEEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVP 80 (152)
T ss_dssp CCCCTTCSCCCCCCTTTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCCC
T ss_pred CCcccHHHHHHHHHHcCCcCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred hhhhhccccccCCccceeehhhHHHHHHHHHHHHHhcccceee
Q 033139 81 DWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRYGLVV 123 (126)
Q Consensus 81 ~w~~nr~~d~~tg~~~h~i~~dL~~~~~~dI~rl~~I~sy~~~ 123 (126)
+||+|||+|++||++.|++++||++++++||+||++|+||||+
T Consensus 81 ~w~lNr~kD~~~G~~~~li~~dL~~~~~~dI~RL~~I~~yRG~ 123 (152)
T 3iz6_M 81 DWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGL 123 (152)
T ss_dssp CCSCSCCCSCCCCSCCTTCTHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hhhhhhhcccCCcceeeechhHHHHHHHHhHHHHhhhheeecc
Confidence 9999999999999999999999999999999999999999985
No 3
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=100.00 E-value=1.7e-50 Score=301.33 Aligned_cols=123 Identities=49% Similarity=0.799 Sum_probs=120.3
Q ss_pred CCCCCcc--ccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCcc
Q 033139 1 MSLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFK 78 (126)
Q Consensus 1 ~~~~~~~--~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~ 78 (126)
|+++++| +|+||+||+|||||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|+++|++|.+|+
T Consensus 1 m~~~~~~~~~f~~m~RI~g~~l~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p~~~~ 80 (155)
T 2xzm_M 1 MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADPEAHG 80 (155)
T ss_dssp CCCCSSTTTSSCSCCEETTTEECCSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSHHHHC
T ss_pred CCccccchHhhhhhHheeCccCCCCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCccccC
Confidence 7888777 99999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CChhhhhccccccCCccceeehhhHHHHHHHHHHHHHhcccceee
Q 033139 79 IPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRYGLVV 123 (126)
Q Consensus 79 iP~w~~nr~~d~~tg~~~h~i~~dL~~~~~~dI~rl~~I~sy~~~ 123 (126)
+|+||+|||+|++||++.|++|+||++++++||+||++|+||||+
T Consensus 81 iP~w~lNr~kD~~~G~~~~~ie~dLr~~~~~dI~Rl~~I~~yRG~ 125 (155)
T 2xzm_M 81 IPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIKSHRGL 125 (155)
T ss_dssp CCGGGCSEEEETTTEEEECCCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHhhcccccCCCceeEEecHHHHHHHHHhHHHHhhhceeeee
Confidence 999999999999999999999999999999999999999999985
No 4
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.2e-50 Score=297.24 Aligned_cols=117 Identities=38% Similarity=0.711 Sum_probs=114.6
Q ss_pred cccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCChhhhhc
Q 033139 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNR 86 (126)
Q Consensus 7 ~~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr 86 (126)
|+||||+||+|||||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|+++|++|.+|++|+||+||
T Consensus 2 ~~~~~m~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~~~~~~iP~w~lNr 81 (148)
T 3j20_O 2 ANFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNR 81 (148)
T ss_dssp CCBCSCEECSSSCEECSSCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHCHHHHCCCTTTSSE
T ss_pred hhhhHhHHHcCccCCCCCEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhcccccCCChhhhcc
Confidence 67999999999999999999999999999999999999999999999999999999999999999987668999999999
Q ss_pred cccccCCccceeehhhHHHHHHHHHHHHHhcccceee
Q 033139 87 QKDYKDGRYSQVVSNALDMKLRDDLERLKKIRYGLVV 123 (126)
Q Consensus 87 ~~d~~tg~~~h~i~~dL~~~~~~dI~rl~~I~sy~~~ 123 (126)
|+|++||++.|++|+||++++++||+||++|+||||+
T Consensus 82 ~kD~~~G~~~~~ve~dL~~~~~~dI~RL~~I~~yRG~ 118 (148)
T 3j20_O 82 PKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGI 118 (148)
T ss_dssp EEETTTEEEECCCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred cCCCCCCceeEEechHHHHHHHHHHHHHHHhCcEEee
Confidence 9999999999999999999999999999999999985
No 5
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=99.98 E-value=2.6e-33 Score=202.52 Aligned_cols=90 Identities=23% Similarity=0.341 Sum_probs=87.1
Q ss_pred chhhccccCCCCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCChhhhhcccccc
Q 033139 12 ILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYK 91 (126)
Q Consensus 12 mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~ 91 (126)
|+||+|||||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|+++|++ +|
T Consensus 1 m~rI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~--~~-------------- 64 (126)
T 2vqe_M 1 MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN--TW-------------- 64 (126)
T ss_dssp -CCCSTTCCCCSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHT--TS--------------
T ss_pred CceEeCccCCCCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHH--hC--------------
Confidence 89999999999999999999999999999999999999999999999999999999999997 57
Q ss_pred CCccceeehhhHHHHHHHHHHHHHhcccceee
Q 033139 92 DGRYSQVVSNALDMKLRDDLERLKKIRYGLVV 123 (126)
Q Consensus 92 tg~~~h~i~~dL~~~~~~dI~rl~~I~sy~~~ 123 (126)
++|+||++++++||+||++|+||||+
T Consensus 65 ------~ve~dLrr~~~~nIkRL~~I~~YRG~ 90 (126)
T 2vqe_M 65 ------KLEGELRAEVAANIKRLMDIGCYRGL 90 (126)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------cchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999999985
No 6
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=99.97 E-value=5.4e-32 Score=192.71 Aligned_cols=88 Identities=26% Similarity=0.383 Sum_probs=85.1
Q ss_pred hhhccccCCCCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccC
Q 033139 13 LRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKD 92 (126)
Q Consensus 13 vrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~t 92 (126)
+||+|||||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|+++|+ +|
T Consensus 1 ~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~---~~--------------- 62 (114)
T 3r8n_M 1 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVA---KF--------------- 62 (114)
T ss_dssp CCTTSSCCCCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHHS---SS---------------
T ss_pred CeeCCccCCCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHHH---Hh---------------
Confidence 589999999999999999999999999999999999999999999999999999999995 48
Q ss_pred CccceeehhhHHHHHHHHHHHHHhcccceee
Q 033139 93 GRYSQVVSNALDMKLRDDLERLKKIRYGLVV 123 (126)
Q Consensus 93 g~~~h~i~~dL~~~~~~dI~rl~~I~sy~~~ 123 (126)
.|++||++++++||+||++|+||||+
T Consensus 63 -----~ie~dLr~~~~~dI~RL~~I~~yRG~ 88 (114)
T 3r8n_M 63 -----VVEGDLRREISMSIKRLMDLGCYRGL 88 (114)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred -----cchHHHHHHHHHHHHHHHHhceeeee
Confidence 78999999999999999999999985
No 7
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.93 E-value=1.3e-28 Score=181.28 Aligned_cols=85 Identities=24% Similarity=0.294 Sum_probs=72.2
Q ss_pred Cccccc------cchhhccccCCCCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCcc
Q 033139 5 ANEDFQ------HILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFK 78 (126)
Q Consensus 5 ~~~~~~------~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~ 78 (126)
.+++|+ ||+||+|||||++|++.+||++|||||+++|.+||+++|| |++++++||++|+++|+++
T Consensus 33 ~~~~~~~~~~~~~m~RI~gvdlp~~K~v~~aLt~IyGIG~~~A~~I~~~~gI-~~~rv~~Lte~ei~~l~~~-------- 103 (145)
T 3bbn_M 33 KKGGIGHGGLQIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLNF-DNKVTKDLSEEEVIILRKE-------- 103 (145)
T ss_dssp --------------CCCSSSCCCCSSBTTTGGGGSTTCCSSTTTGGGTTTTC-CSCBTTSCCSSTTHHHHSS--------
T ss_pred CchhhhcccchhheeeEeCcccCCCCEEEEeeeeecCccHHHHHHHHHHcCC-CceEcCCCCHHHHHHHHHH--------
Confidence 447788 8999999999999999999999999999999999999999 7999999999999999865
Q ss_pred CChhhhhccccccCCccceeehhhHHHHHHHHHHHHHhcccceee
Q 033139 79 IPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRYGLVV 123 (126)
Q Consensus 79 iP~w~~nr~~d~~tg~~~h~i~~dL~~~~~~dI~rl~~I~sy~~~ 123 (126)
| +.+++||+||++|+||||+
T Consensus 104 -------R------------------r~v~~nIkRL~~I~~YRGl 123 (145)
T 3bbn_M 104 -------K------------------RFNRVAIERLKEIRCYRGI 123 (145)
T ss_dssp -------C------------------CCCSTTTHHHHCCCCSCCT
T ss_pred -------H------------------HHHHHHHHHHhhhceEeee
Confidence 2 2258999999999999996
No 8
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=96.74 E-value=0.00092 Score=56.44 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=45.5
Q ss_pred eehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 24 QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
+-..|.-..|.+||..+|.+||+.+|++|++++++|+++|+.+|.+++.+
T Consensus 254 ~~~~fl~~~f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (471)
T 1mu5_A 254 TIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKK 303 (471)
T ss_dssp BHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHH
T ss_pred chHHhhhccccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHh
Confidence 34456667899999999999999999999999999999999999999986
No 9
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=96.27 E-value=0.0037 Score=49.34 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=46.1
Q ss_pred CCeehheeh---hhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 22 ~~K~v~~aL---t~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
.+.+|.-+| +-|-|||.-.|.++|=.+||+|..++++||++|+++|-+.+.
T Consensus 154 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~ 207 (273)
T 3u6p_A 154 TKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMV 207 (273)
T ss_dssp CCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred CcchHHHHHhcCCccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHH
Confidence 467777777 578999999999999999999999999999999999888876
No 10
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=96.19 E-value=0.0043 Score=48.78 Aligned_cols=51 Identities=27% Similarity=0.238 Sum_probs=45.5
Q ss_pred CCeehheeh---hhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 22 ~~K~v~~aL---t~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
.+.+|.-+| +-|-|||.-.|.++|=.+||+|..+.++||++|+.+|.+.+.
T Consensus 149 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~ 202 (268)
T 1k82_A 149 KKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIK 202 (268)
T ss_dssp CCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 456777777 578999999999999999999999999999999998877765
No 11
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=96.15 E-value=0.0043 Score=48.78 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=45.3
Q ss_pred CCeehheeh---hhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 22 ~~K~v~~aL---t~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
.+.+|.-+| +-|-|||.-.|.++|=.+||+|..++++||++|+++|.+.+.
T Consensus 142 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~ 195 (266)
T 1ee8_A 142 SARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALR 195 (266)
T ss_dssp CCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHH
T ss_pred CCccHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 456777777 578999999999999999999999999999999998877765
No 12
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=96.07 E-value=0.0052 Score=49.23 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=46.3
Q ss_pred Ceehheeh---hhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 23 KQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 23 ~K~v~~aL---t~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
+.+|.-+| +-|-|||.-.|.++|=.+||+|..++++||++|+++|.+.+.+
T Consensus 174 ~~~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~~Ls~~~~~~L~~ai~~ 227 (287)
T 3w0f_A 174 DRMLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVCQLSDKQACHLVKMTRD 227 (287)
T ss_dssp SSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGGGSCHHHHHHHHHHHHH
T ss_pred cccHHHHHhcCCccccccHHHHHHHHHHccCCccCccccCCHHHHHHHHHHHHH
Confidence 45677777 5789999999999999999999999999999999999999875
No 13
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=96.07 E-value=0.0052 Score=49.42 Aligned_cols=51 Identities=27% Similarity=0.278 Sum_probs=44.5
Q ss_pred CCeehheeh---hhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 22 ~~K~v~~aL---t~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
.+.+|.-+| +-|-|||.-.|.++|=.+||+|..++++||++|+++|.+.+.
T Consensus 167 ~~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~ 220 (310)
T 3twl_A 167 KKITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIK 220 (310)
T ss_dssp CCSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred CcchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHH
Confidence 467777777 468999999999999999999999999999999998866654
No 14
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=95.93 E-value=0.0064 Score=47.60 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=44.6
Q ss_pred Ceehheeh---hhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 23 KQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 23 ~K~v~~aL---t~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
+++|.-+| +-|-|||.-.|.++|=.+||+|..+.++||++|+..|.+.+.
T Consensus 150 ~~~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~ 202 (262)
T 1k3x_A 150 NRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALL 202 (262)
T ss_dssp TSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHH
T ss_pred cccHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHH
Confidence 46777777 456999999999999999999999999999999999888775
No 15
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=95.85 E-value=0.0069 Score=47.64 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=45.2
Q ss_pred CCeehheeh---hhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 22 ~~K~v~~aL---t~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
.+.+|.-+| +-|-|||.-.|.++|=.+||+|..+.++||++|+.+|.+.+.
T Consensus 152 ~~~~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~ 205 (271)
T 2xzf_A 152 STKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSII 205 (271)
T ss_dssp CCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHH
T ss_pred CCccHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHH
Confidence 456777777 578999999999999999999999999999999998877665
No 16
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=95.68 E-value=0.0088 Score=47.74 Aligned_cols=51 Identities=25% Similarity=0.329 Sum_probs=45.3
Q ss_pred CCeehheeh---hh-hcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 22 GKQKIMFAL---TS-IKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 22 ~~K~v~~aL---t~-IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
.+.+|.-+| +- |-|||.-.|.+||=.+||+|..++++||++|+++|.+.+.
T Consensus 153 ~~~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~ 207 (295)
T 3vk8_A 153 YKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIK 207 (295)
T ss_dssp CCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHH
T ss_pred cCchHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHH
Confidence 566777777 34 8999999999999999999999999999999999888765
No 17
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=94.25 E-value=0.04 Score=47.19 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=43.4
Q ss_pred heehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 27 MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 27 ~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
.|.-..+.++|.++|..+|+.+|+++++++++|+.+|+..+..++.+
T Consensus 256 ~fl~~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~ 302 (530)
T 2zbk_B 256 EFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKK 302 (530)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHH
T ss_pred hhhcCccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHh
Confidence 56667799999999999999999999999999999999999999885
No 18
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=94.20 E-value=0.04 Score=43.02 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=50.6
Q ss_pred ccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 8 ~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
.|.++++. ..-...|++.-+|..+ |.+...+.++++.+||+|++++.+||-+|..+|.+.+++
T Consensus 207 ~~~~~v~~--~F~~rrKtL~n~L~~~-~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 269 (271)
T 3fut_A 207 GLFRLVEA--AFGKRRKTLLNALAAA-GYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLEG 269 (271)
T ss_dssp HHHHHHHH--HTSSTTSCHHHHHHHT-TCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC-
T ss_pred HHHHHHHH--HHhcCCcHHHHHHHhh-cCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHHh
Confidence 35556654 2345689999999775 456777889999999999999999999999999999874
No 19
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=93.67 E-value=0.033 Score=35.40 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=21.8
Q ss_pred ccccCCCCeehheehhhhcccccchHHHHHHHhC
Q 033139 16 LNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 16 ~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~g 49 (126)
.|.-+..++.....|..|.|||+.+|++|++.+|
T Consensus 12 ~~~~~~~~~~~~~~L~~I~gIG~~~A~~Ll~~fg 45 (78)
T 1kft_A 12 SGLVPRGSHMNTSSLETIEGVGPKRRQMLLKYMG 45 (78)
T ss_dssp -----------CCGGGGCTTCSSSHHHHHHHHHS
T ss_pred hhHHHhHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 3455666777888999999999999999999976
No 20
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=91.88 E-value=0.14 Score=39.33 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=44.5
Q ss_pred cccchhhccccCCCCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 9 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 9 ~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
|..+++.+ .-...|++.-+|..+++ .++++.+||+|+.|+.+||-+|..+|.+.++
T Consensus 194 ~~~~v~~~--F~~rrK~l~n~l~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~ 249 (252)
T 1qyr_A 194 LSRITTEA--FNQRRKTIRNSLGNLFS------VEVLTGMGIDPAMRAENISVAQYCQMANYLA 249 (252)
T ss_dssp HHHHHHHH--HHTTTSBHHHHTTTTCC------HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHhCCcHHHHHHhhhhh------HHHHHHcCCCCCCChHHCCHHHHHHHHHHHH
Confidence 44555432 23578888888887654 5678999999999999999999999999875
No 21
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=91.75 E-value=0.13 Score=31.67 Aligned_cols=50 Identities=10% Similarity=0.166 Sum_probs=36.9
Q ss_pred ehheehhhhcccccchHHHHHHHhCC-------CC--CCcCCCCCHHHHHHHHHHHhCC
Q 033139 25 KIMFALTSIKGIGRRLANIVCKKADV-------DM--NKRAGELSAAELDQLMVVVANP 74 (126)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~~gI-------~p--~~k~~~Ls~~qi~~L~~~i~~~ 74 (126)
.....|+.|.|||+.+|..|++.+|= ++ -..+..+.+.....|...+++|
T Consensus 11 ~~~~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~~ 69 (75)
T 1x2i_A 11 RQRLIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITAP 69 (75)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhCc
Confidence 45567899999999999999998761 11 1345556777778888888764
No 22
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=91.74 E-value=0.064 Score=33.22 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=30.4
Q ss_pred ehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQL 67 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L 67 (126)
.|..|.|||++.++.+++..| .-..+.+.|.+|+..+
T Consensus 5 ~L~~IpGIG~kr~~~LL~~Fg--s~~~i~~As~eeL~~v 41 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSI 41 (63)
T ss_dssp HHHTSTTCCHHHHHHHHHHCS--SHHHHHTCCHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHH
Confidence 578999999999999999877 3455677788888766
No 23
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=91.39 E-value=0.21 Score=33.70 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=38.4
Q ss_pred CeehheehhhhcccccchHHHHHHHhCC---CCCCcCCCCCHHHHHHHHHHHhC
Q 033139 23 KQKIMFALTSIKGIGRRLANIVCKKADV---DMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 23 ~K~v~~aLt~IyGIG~~~A~~Ic~~~gI---~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
|..=.-.|+.+.|||+.+|..|.+.=++ +.-.++.-+.+..+++|...+..
T Consensus 21 NtAs~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V~Gig~~~~e~l~~~l~~ 74 (97)
T 3arc_U 21 NNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH 74 (97)
T ss_dssp TTSCGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGCTTCCHHHHHHHHHTGGG
T ss_pred CcCCHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhccCCCHHHHHHHHHHhce
Confidence 3444457899999999999999994332 22245666899999999998874
No 24
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=89.58 E-value=0.12 Score=40.43 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=46.9
Q ss_pred ccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 8 ~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
.|.++++.+ .-...|++.-+|..+++ ..+++.+||+|++++.+||-+|..+|.+++++
T Consensus 217 ~~~~~v~~~--F~~rrK~l~n~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 274 (279)
T 3uzu_A 217 VLGEVVTAA--FSQRRKMLRNTLGGYRD------LVDFDALGFDLARRAEDIGVDEYVRVAQAVAS 274 (279)
T ss_dssp HHHHHHHHH--GGGTTSBHHHHTGGGTT------TCCTTTTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HhccChHHHHHHHhhcC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHHHH
Confidence 356666653 44568899999988754 35688999999999999999999999999874
No 25
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=89.51 E-value=0.12 Score=33.40 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=36.0
Q ss_pred ehheehhhhcccccchHHHHHHHhCC-------CC--CCcCCCCCHHHHHHHHHHHhCC
Q 033139 25 KIMFALTSIKGIGRRLANIVCKKADV-------DM--NKRAGELSAAELDQLMVVVANP 74 (126)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~~gI-------~p--~~k~~~Ls~~qi~~L~~~i~~~ 74 (126)
.+..+|+.|.|||+.+|..|++.+|= ++ -..+..+.+....+|...+++|
T Consensus 16 ~~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~~ 74 (89)
T 1z00_A 16 RVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEP 74 (89)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999998761 11 1234445666667777777763
No 26
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=89.43 E-value=0.13 Score=33.53 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=22.5
Q ss_pred ehheehhhhcccccchHHHHHHHhC
Q 033139 25 KIMFALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~~g 49 (126)
.+..+|+.|.|||+.+|..|++.+|
T Consensus 29 ~~~~~L~~IpgIG~~~A~~Ll~~fg 53 (91)
T 2a1j_B 29 RVTECLTTVKSVNKTDSQTLLTTFG 53 (91)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 4567899999999999999999887
No 27
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=89.06 E-value=0.34 Score=36.92 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=43.4
Q ss_pred ccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 8 ~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
.|.++++.+ .-...|++.-+|... .++.+||+|++|+.+||-+|..+|.+.+++
T Consensus 193 ~~~~~v~~~--F~~rrk~l~~~l~~~----------~l~~~~i~~~~r~e~l~~~~f~~l~~~~~~ 246 (249)
T 3ftd_A 193 NYKKFLTKI--FQNRRKVLRKKIPEE----------LLKEAGINPDARVEQLSLEDFFKLYRLIED 246 (249)
T ss_dssp HHHHHHHHH--HSSTTSCGGGTSCHH----------HHHHTTCCTTCCGGGCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHH--HhCcChhHHHHHHHH----------HHHHCCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 355555542 344678888888765 689999999999999999999999999875
No 28
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=88.43 E-value=0.55 Score=33.68 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=42.5
Q ss_pred CeehheehhhhcccccchHHHHHHHhC---CCCCCcCCCCCHHHHHHHHHHHhCCCCccC--Chhhhh
Q 033139 23 KQKIMFALTSIKGIGRRLANIVCKKAD---VDMNKRAGELSAAELDQLMVVVANPRQFKI--PDWFLN 85 (126)
Q Consensus 23 ~K~v~~aLt~IyGIG~~~A~~Ic~~~g---I~p~~k~~~Ls~~qi~~L~~~i~~~~~~~i--P~w~~n 85 (126)
|..=.-.|+.+.|||+++|.+|.+.-. ++.-+.+..+++.+.+.|.+..++ +.+ |+=.+|
T Consensus 58 NtA~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~V~GIg~k~~e~l~~~~~~---~tv~~p~~~~~ 122 (134)
T 1s5l_U 58 NNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH---FTVTEVETALV 122 (134)
T ss_dssp TTSCGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGCTTCCHHHHHHHHHHHTT---EECCCCCHHHH
T ss_pred cccCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhCCCCCHHHHHHHHHhhcc---eeecCchHHHh
Confidence 333445688999999999999996422 334456777799999999988875 443 444444
No 29
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=88.08 E-value=0.24 Score=38.08 Aligned_cols=56 Identities=11% Similarity=0.180 Sum_probs=43.4
Q ss_pred ccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 033139 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVV 71 (126)
Q Consensus 8 ~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i 71 (126)
.|.++++.+ .-...|++.-+|..+++ ...++.+||+|++++.+||-+|..+|.+++
T Consensus 199 ~~~~~v~~~--F~~rrK~l~~~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 199 QLSHVVKEA--FSYRRKTVGNALKKLIN------PSQWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp HHHHHHHHH--HHSTTSCHHHHTTTTCC------GGGTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHccChHHHHHHhhhCC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 355666542 34467888888887653 235789999999999999999999998876
No 30
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=87.94 E-value=0.25 Score=30.96 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=29.1
Q ss_pred ehheehhhhcccccchHHHHHHHhCCCC---CCcCCCCCHHHHHHHHH
Q 033139 25 KIMFALTSIKGIGRRLANIVCKKADVDM---NKRAGELSAAELDQLMV 69 (126)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~~gI~p---~~k~~~Ls~~qi~~L~~ 69 (126)
.-.-.|..+.|||+.+|.+|.+...+.. -.++..++...+++|..
T Consensus 24 a~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 24 ASLEELMALPGIGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp CCHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHcccCCHHHHHhCCCCCHHHHHHHHH
Confidence 3445688999999999999999763321 22334445555555544
No 31
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=86.47 E-value=0.059 Score=44.34 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=36.1
Q ss_pred Ceehheeh---hhhcccccchHHHHHHHhCCCCCCcCCCCCHH
Q 033139 23 KQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAA 62 (126)
Q Consensus 23 ~K~v~~aL---t~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~ 62 (126)
+.+|.-+| +-|-|||.-.|.++|=.+||+|..+.++|+++
T Consensus 158 ~~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~Ls~~ 200 (364)
T 1tdh_A 158 DRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200 (364)
T ss_dssp GSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGG
T ss_pred cccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhhcCHH
Confidence 56777777 57899999999999999999999999999987
No 32
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=84.29 E-value=0.42 Score=37.63 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=50.2
Q ss_pred cccchhhccccCCCCeehheehhhhc---ccccchHHHHHHHh-----CCCC--CCcCCCCCHHHHHHHHHHHhC
Q 033139 9 FQHILRVLNTNVDGKQKIMFALTSIK---GIGRRLANIVCKKA-----DVDM--NKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 9 ~~~mvrI~g~~l~~~K~v~~aLt~Iy---GIG~~~A~~Ic~~~-----gI~p--~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
|.++++.+ .-...|++.-+|.... |+.+..+.++++.+ |+++ ++|+.+||-+|..+|.+.+.+
T Consensus 215 ~~~~v~~~--F~~rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~ 287 (295)
T 3gru_A 215 FDDFLRAI--FQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYR 287 (295)
T ss_dssp HHHHHHHH--HTTTTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HccCchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHH
Confidence 55666542 3456899999998764 34466788899998 8999 999999999999999998864
No 33
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=83.38 E-value=1.4 Score=28.90 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=29.2
Q ss_pred heehhhhcccccchHHHHHHHhC-------CCCCCcCCCCCHHHHHHHHH
Q 033139 27 MFALTSIKGIGRRLANIVCKKAD-------VDMNKRAGELSAAELDQLMV 69 (126)
Q Consensus 27 ~~aLt~IyGIG~~~A~~Ic~~~g-------I~p~~k~~~Ls~~qi~~L~~ 69 (126)
.-.|+.++|||+.+|.+|++... +..-.++.-++...+++|.+
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v~Gig~k~~~~l~~ 88 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLK 88 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhCCCCCHHHHHHHHH
Confidence 34589999999999999998762 22223444456666666544
No 34
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=81.89 E-value=0.18 Score=37.80 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=44.8
Q ss_pred hccccCCCCeehheehhhhcccccchHHHHHHHhCCC----------C--CCcCCCCCHHHHHHHHHHHhC
Q 033139 15 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVD----------M--NKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 15 I~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~----------p--~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
+.|-.=...|.++..|.+|.|||+++|..|++.+|-+ + -.++.-+.+.-.++|...+++
T Consensus 59 l~gf~~~~ek~~f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~ 129 (191)
T 1ixr_A 59 LYGFPDEENLALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKG 129 (191)
T ss_dssp EEEESSHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTT
T ss_pred hhccCCHHHHHHHHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 5555555666777778999999999999999988862 1 256666788888888888865
No 35
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=81.12 E-value=0.92 Score=33.80 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=31.5
Q ss_pred ehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 25 KIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
...-.|..++|||+.+|..||.-+|.. +.- --|..+.++.+-+.
T Consensus 114 ~~~~~L~~lpGIG~kTA~~il~~~~~~-~~~---~vD~~v~Ri~~rlg 157 (207)
T 3fhg_A 114 LARERLLNIKGIGMQEASHFLRNVGYF-DLA---IIDRHIIDFMRRIG 157 (207)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHTTCC-SSC---CCCHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCCC-Ccc---eecHHHHHHHHHcC
Confidence 456678899999999999999876773 322 23457777666653
No 36
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=80.82 E-value=0.66 Score=30.36 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=31.8
Q ss_pred CeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 033139 23 KQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQL 67 (126)
Q Consensus 23 ~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L 67 (126)
|-...-.|..|+|||+.....+++.+| .-..+.+.|.+||..+
T Consensus 13 N~~~~s~L~~IpGIG~kr~~~LL~~Fg--Sl~~i~~AS~eEL~~v 55 (84)
T 1z00_B 13 NPGPQDFLLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSI 55 (84)
T ss_dssp CHHHHHHHHTCSSCCHHHHHHHHHHSS--CHHHHHHSCHHHHHHH
T ss_pred cccHHHHHHhCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHH
Confidence 344556789999999999999998776 2344566677777666
No 37
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=80.22 E-value=0.67 Score=37.30 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=27.8
Q ss_pred ccccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhC
Q 033139 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 6 ~~~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~g 49 (126)
.++|-.+.=+.|+|-.++ |.|||+++|.+++++.|
T Consensus 219 ~~q~id~~~L~G~D~~~g---------ipGiG~KtA~kll~~~g 253 (341)
T 3q8k_A 219 QEQFVDLCILLGSDYCES---------IRGIGPKRAVDLIQKHK 253 (341)
T ss_dssp HHHHHHHHHHHCCSSSCC---------CTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCCCC---------CCCccHHHHHHHHHHcC
Confidence 356777888888665443 68999999999999876
No 38
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=79.54 E-value=0.25 Score=37.68 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=46.1
Q ss_pred hhccccCCCCeehheehhhhcccccchHHHHHHHhCCCCC------------CcCCCCCHHHHHHHHHHHhC
Q 033139 14 RVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMN------------KRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 14 rI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~------------~k~~~Ls~~qi~~L~~~i~~ 73 (126)
.++|-.-...+.++.-|.+|.|||+++|..|+..+|.+.- .++.-+.+.-.++|...++.
T Consensus 74 ~LyGF~~~~Er~lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 74 TLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp EEEEESSHHHHHHHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred ceEecCcHHHHHHHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 3455444566667777889999999999999998886332 47777888888899888876
No 39
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=79.43 E-value=0.96 Score=34.38 Aligned_cols=42 Identities=21% Similarity=0.119 Sum_probs=29.6
Q ss_pred hheehh-hhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 033139 26 IMFALT-SIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVV 71 (126)
Q Consensus 26 v~~aLt-~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i 71 (126)
..-.|. .++|||+.+|..||..+|..|...+ |..+.++.+-+
T Consensus 127 ~r~~L~~~l~GVG~kTA~~vL~~~g~~~~~~V----Dthv~Ri~~rl 169 (219)
T 3n0u_A 127 SREFLVRNAKGIGWKEASHFLRNTGVEDLAIL----DKHVLRLMKRH 169 (219)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHTTTCCSCCCC----CHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCCeeee----cHHHHHHHHHc
Confidence 445577 9999999999999977787443332 34666666554
No 40
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=78.84 E-value=0.26 Score=37.18 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=42.3
Q ss_pred hccccCCCCeehheehhhhcccccchHHHHHHHhCCCCC------------CcCCCCCHHHHHHHHHHHhC
Q 033139 15 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMN------------KRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 15 I~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~------------~k~~~Ls~~qi~~L~~~i~~ 73 (126)
|.|-.=...|.++..|.+|.|||+++|..|++.+|-+.- .++.-+.+.-.++|...+++
T Consensus 60 l~gf~~~~ek~~f~~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk~ 130 (203)
T 1cuk_A 60 LYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKD 130 (203)
T ss_dssp EEEESSHHHHHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 555555566666677889999999999999998876221 45556677777777776654
No 41
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=78.66 E-value=1.9 Score=34.58 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=42.2
Q ss_pred CCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 22 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 22 ~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
+++.+.-.|... +..+.+..+|+..|++ ++++.++|+++..+|.+.+++
T Consensus 279 ~~~~~~~~l~~~--lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~ 327 (401)
T 2gqf_A 279 PKQMLKTILVRL--LPKKLVELWIEQGIVQ-DEVIANISKVRVKNLVDFIHH 327 (401)
T ss_dssp TTSBHHHHHTTT--SCHHHHHHHHHTTSSC-CCBGGGCCHHHHHHHHHHHHC
T ss_pred ccccHHHHhhhh--cCHHHHHHHHHHcCCC-CCchhhCCHHHHHHHHHHHhc
Confidence 466777777764 7789999999999998 688999999999999999985
No 42
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=78.57 E-value=0.96 Score=34.30 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=31.7
Q ss_pred hheehh-hhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 26 IMFALT-SIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 26 v~~aLt-~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
..-.|. +++|||+.+|..|+..+|. +...+ =|..+.++.+-+.
T Consensus 122 ~re~Ll~~LpGVG~KTA~~vL~~~g~-~~~~v---VDthv~Ri~~RlG 165 (214)
T 3fhf_A 122 AREFLVRNIKGIGYKEASHFLRNVGY-DDVAI---IDRHILRELYENN 165 (214)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHTTC-CSCCC---CCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCC-CCccc---CcHHHHHHHHHcC
Confidence 445577 9999999999999988876 44432 2467777777664
No 43
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=78.22 E-value=2.2 Score=34.60 Aligned_cols=49 Identities=27% Similarity=0.394 Sum_probs=41.1
Q ss_pred CCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 22 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 22 ~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
+++.+.-.|.. .+..+.+..+|+.+++ +++++.+++++++.+|.+.|++
T Consensus 298 ~~~~~~~~l~~--~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 346 (417)
T 3v76_A 298 GRQAVQTALAD--ILPRRLAQFFADEAKL-TGRMLADLSDKTIDALASSIQV 346 (417)
T ss_dssp CSSBHHHHHTT--TSCHHHHHHHHHHTTC-TTCBGGGCCHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHH--HhhHHHHHHHHHhcCC-CCCchhhCCHHHHHHHHHHhcC
Confidence 45555555554 3778899999999999 9999999999999999999986
No 44
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=77.54 E-value=0.77 Score=35.27 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=30.1
Q ss_pred heehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 033139 27 MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQL 67 (126)
Q Consensus 27 ~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L 67 (126)
...|..|.|||+.+|+.+++..| .-..+.+-|.+|+.++
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~V 205 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARV 205 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHH
Confidence 46788999999999999999988 1233556677777665
No 45
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=77.02 E-value=0.88 Score=37.00 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=37.4
Q ss_pred ccccccchhhcccc-CCCCeehheehhhhcccccchHHHHHHHhC-CC---CCCcCCCCCHHHHHHHHHHHhCC
Q 033139 6 NEDFQHILRVLNTN-VDGKQKIMFALTSIKGIGRRLANIVCKKAD-VD---MNKRAGELSAAELDQLMVVVANP 74 (126)
Q Consensus 6 ~~~~~~mvrI~g~~-l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~g-I~---p~~k~~~Ls~~qi~~L~~~i~~~ 74 (126)
.++|-.+.=+.|+| +|. .|.|||+++|.+++++.| ++ .+..-..+. .....+++++-+|
T Consensus 237 ~~q~id~~~L~GsDy~p~---------GVpGIG~KtA~kLl~~~gsle~il~~~~~~~~~-~~~~~~~~~f~~p 300 (363)
T 3ory_A 237 LENLIDIGILLGTDYNPD---------GFEGIGPKKALQLVKAYGGIEKIPKPILKSPIE-VDVIAIKKYFLQP 300 (363)
T ss_dssp HHHHHHHHHHHCBTTBTT---------CSTTCCHHHHHHHHHHHTSSTTSCGGGCCCSSC-CCHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCCCCC---------CCCCcCHHHHHHHHHHcCCHHHHHHhcccccCC-CCHHHHHHHhcCC
Confidence 35667777888866 431 688999999999999987 11 111101111 1345777777776
No 46
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=76.66 E-value=0.51 Score=36.57 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred eehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 033139 28 FALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQ 66 (126)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~ 66 (126)
..|..|.|||+.+|..|++. |+..-..+..-+.++|..
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~-gf~sve~L~~a~~~eL~~ 52 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREA-GFESVEDVRGADQSALAD 52 (241)
T ss_dssp ---------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHHc-CCCCHHHHHhCCHHHHHh
Confidence 36788999999999999988 776544444334444443
No 47
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=74.13 E-value=9.4 Score=23.84 Aligned_cols=57 Identities=7% Similarity=0.154 Sum_probs=40.3
Q ss_pred cchHHHHHHHhCCCCC------CcCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCCccceeehhhHHHHHHHHH
Q 033139 38 RRLANIVCKKADVDMN------KRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDL 111 (126)
Q Consensus 38 ~~~A~~Ic~~~gI~p~------~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg~~~h~i~~dL~~~~~~dI 111 (126)
+..|.-|.+.+|+.+. .+++.+|.+|+.+|.+.-.. . +...||...+++=+
T Consensus 3 Ppas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~--d---------------------l~a~~l~~a~k~I~ 59 (67)
T 1qa6_A 3 PPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMP--D---------------------LNAASIEAAMRMIE 59 (67)
T ss_dssp SCHHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHGG--G---------------------CCCSSHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCCCCCcccceecHHHHHHHHHHHHH--h---------------------hcccCHHHHHHHHH
Confidence 4567778888888653 46899999999999987543 1 45677777777655
Q ss_pred HHHHhc
Q 033139 112 ERLKKI 117 (126)
Q Consensus 112 ~rl~~I 117 (126)
---+.+
T Consensus 60 GTArSm 65 (67)
T 1qa6_A 60 GTARSM 65 (67)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 444433
No 48
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=73.52 E-value=2.2 Score=31.88 Aligned_cols=31 Identities=6% Similarity=-0.117 Sum_probs=28.0
Q ss_pred HHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 43 IVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 43 ~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
++++.+|++|+.++.+||-+|..+|.+.+++
T Consensus 211 ~~~~~~~~~~~~r~e~l~~~~~~~l~~~~~~ 241 (244)
T 1qam_A 211 QFNNSLKHAGIDDLNNISFEQFLSLFNSYKL 241 (244)
T ss_dssp HHHHHHHHHTCSCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCceeCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999998863
No 49
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=71.36 E-value=4.1 Score=26.11 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.3
Q ss_pred HHHhCCCCCCcCCCCCHHHHHHHHHH
Q 033139 45 CKKADVDMNKRAGELSAAELDQLMVV 70 (126)
Q Consensus 45 c~~~gI~p~~k~~~Ls~~qi~~L~~~ 70 (126)
++++||+. ..+.+||++|+.+....
T Consensus 37 L~kLGI~k-tdP~~LT~eEi~~FaRL 61 (71)
T 2eo2_A 37 LKKLGIHK-TDPSTLTEEEVRKFARL 61 (71)
T ss_dssp HHHHTCCC-CSTTTCCHHHHHHHHHT
T ss_pred HHHcCCCC-CCcccCCHHHHhhceec
Confidence 67999995 68999999999887654
No 50
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=71.30 E-value=1.4 Score=33.40 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=18.9
Q ss_pred eehhhhcccccchHHHHHHHhC
Q 033139 28 FALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~~g 49 (126)
-.|+.++|||+++|.+|+..+.
T Consensus 123 ~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 123 AALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHH
Confidence 3589999999999999996663
No 51
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=71.27 E-value=1.5 Score=32.51 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.2
Q ss_pred hheehhhhcccccchHHHHHHHhC
Q 033139 26 IMFALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~~g 49 (126)
....|+.|.|||+.+|..|++..|
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~fg 183 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILERFG 183 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcC
Confidence 345688999999999999999987
No 52
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=69.73 E-value=1.7 Score=37.02 Aligned_cols=28 Identities=14% Similarity=0.428 Sum_probs=23.7
Q ss_pred eehheehhhhcccccchHHHHHHHhCCC
Q 033139 24 QKIMFALTSIKGIGRRLANIVCKKADVD 51 (126)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~~gI~ 51 (126)
+.....|.+++|||+++|..|+..+|+.
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~lg~~ 116 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEGLGID 116 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHTSCCC
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHhcCCC
Confidence 4456678999999999999999987765
No 53
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=68.72 E-value=3 Score=31.27 Aligned_cols=41 Identities=17% Similarity=-0.029 Sum_probs=27.3
Q ss_pred hheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHH
Q 033139 26 IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVV 70 (126)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~ 70 (126)
..-.|..++|||+.+|..||-.+.=.|... -|..+.++..-
T Consensus 119 ~~~~L~~lpGIG~kTA~~il~~a~~~~~~~----vD~~v~Ri~~r 159 (218)
T 1pu6_A 119 TREWLLDQKGIGKESADAILCYACAKEVMV----VDKYSYLFLKK 159 (218)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHTTCCSCCC----CCHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHCCCCccc----cCHHHHHHHHH
Confidence 344689999999999999998654334222 24455555443
No 54
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=68.02 E-value=10 Score=24.21 Aligned_cols=60 Identities=7% Similarity=0.119 Sum_probs=44.8
Q ss_pred cchHHHHHHHhCCCCC------CcCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCCccceeehhhHHHHHHHHH
Q 033139 38 RRLANIVCKKADVDMN------KRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDL 111 (126)
Q Consensus 38 ~~~A~~Ic~~~gI~p~------~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg~~~h~i~~dL~~~~~~dI 111 (126)
+..|.-|.+.+|+.+. .+++.+|.+|+.+|.+.-.. . +...||...+++=+
T Consensus 8 Ppas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~--d---------------------l~a~~l~~a~k~I~ 64 (76)
T 1hc8_A 8 PPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMP--D---------------------LNAASIEAAMRMIE 64 (76)
T ss_dssp CCHHHHHHHHHTCSCCCSSTTTCCCEEECHHHHHHHHHHSGG--G---------------------CCCSSHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCCCCCcEeeeecHHHHHHHHHHHHH--h---------------------hCCCCHHHHHHHHH
Confidence 4567778888888753 46789999999999987542 1 46788888888777
Q ss_pred HHHHhcccc
Q 033139 112 ERLKKIRYG 120 (126)
Q Consensus 112 ~rl~~I~sy 120 (126)
---+.++|-
T Consensus 65 GTArSmGi~ 73 (76)
T 1hc8_A 65 GTARSMGIV 73 (76)
T ss_dssp HHHHHHTEE
T ss_pred HHHHcCeeE
Confidence 666666664
No 55
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=68.01 E-value=2 Score=34.47 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=30.3
Q ss_pred hheehhhhcccccchHHHHHHHhCCCCCCc----CCCCCHHHHHHHHHH
Q 033139 26 IMFALTSIKGIGRRLANIVCKKADVDMNKR----AGELSAAELDQLMVV 70 (126)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k----~~~Ls~~qi~~L~~~ 70 (126)
....|++|+|||+++|.++-++ ||..--- -+.|+..|..-|.-+
T Consensus 96 ~l~~l~~V~GiGpk~a~~l~~~-Gi~tledL~~a~~~l~~~~~~gl~~~ 143 (335)
T 2fmp_A 96 SINFLTRVSGIGPSAARKFVDE-GIKTLEDLRKNEDKLNHHQRIGLKYF 143 (335)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHT-TCCSHHHHHTCGGGSCHHHHHHHHTH
T ss_pred HHHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHHhhhhhHHHHHHHHHHH
Confidence 3456899999999999999888 9874211 245666555554443
No 56
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=66.67 E-value=1.9 Score=31.93 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=19.4
Q ss_pred hheehhhhcccccchHHHHHHHh
Q 033139 26 IMFALTSIKGIGRRLANIVCKKA 48 (126)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~~ 48 (126)
..-.|..++|||+.+|..|+-.+
T Consensus 107 ~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 107 DRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCChHHHHHHHHHH
Confidence 44568999999999999998764
No 57
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K
Probab=66.52 E-value=13 Score=27.22 Aligned_cols=63 Identities=8% Similarity=0.153 Sum_probs=50.3
Q ss_pred cccchHHHHHHHhCCCCCC--------cCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCCccceeehhhHHHHH
Q 033139 36 IGRRLANIVCKKADVDMNK--------RAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKL 107 (126)
Q Consensus 36 IG~~~A~~Ic~~~gI~p~~--------k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg~~~h~i~~dL~~~~ 107 (126)
+-+..|.-|.+.+|+.+.. +++.+|-+|+.+|.+.-.. - +...||...+
T Consensus 73 vtPpas~Ll~kaag~~~gs~k~~p~~~~vG~it~~qv~eIA~~K~~---d--------------------l~a~~l~~a~ 129 (165)
T 2zkr_i 73 VVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRH---R--------------------SLARELSGTI 129 (165)
T ss_dssp CCCCHHHHHHHHHTCSSCCSSTTTCSSCSEEECHHHHHHHHHHHTT---T--------------------CCCSSHHHHH
T ss_pred ECCCHHHHHHHHhCCCCCCcccccCceEEeeEeHHHHHHHHHHHHH---h--------------------hcCccHHHHH
Confidence 3688899999999998654 6789999999999998653 1 4678888888
Q ss_pred HHHHHHHHhcccce
Q 033139 108 RDDLERLKKIRYGL 121 (126)
Q Consensus 108 ~~dI~rl~~I~sy~ 121 (126)
++=+---+.++|.+
T Consensus 130 k~I~GTArSmGi~V 143 (165)
T 2zkr_i 130 KEILGTAQSVGCNV 143 (165)
T ss_dssp HHHHHHHHHHTEEE
T ss_pred HHHHHHHHhCeeEE
Confidence 88877777777754
No 58
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=65.68 E-value=2.1 Score=34.30 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=21.9
Q ss_pred eehheehhhhcccccchHHHHHHHhCCCC
Q 033139 24 QKIMFALTSIKGIGRRLANIVCKKADVDM 52 (126)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p 52 (126)
-++.-.|++|+|||+++|.++-+. ||..
T Consensus 92 ~p~l~ll~~v~GiG~k~a~~l~~~-Gi~t 119 (335)
T 2bcq_A 92 VPVLELFSNIWGAGTKTAQMWYQQ-GFRS 119 (335)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHT-TCCS
T ss_pred hHHHHHHhcCCCcCHHHHHHHHHc-CCCC
Confidence 334445579999999999999877 8864
No 59
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=65.49 E-value=1.3 Score=34.09 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred ehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 033139 25 KIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQL 67 (126)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L 67 (126)
.....|..|.|||+.+|+.+++..|= -..+.+-|.+++.++
T Consensus 170 ~~~s~L~~IpGIG~k~ak~Ll~~FGS--l~~i~~As~eeL~~V 210 (226)
T 3c65_A 170 MFHSVLDDIPGVGEKRKKALLNYFGS--VKKMKEATVEELQRA 210 (226)
T ss_dssp -------------------------------------------
T ss_pred cccccccccCCCCHHHHHHHHHHhCC--HHHHHhCCHHHHHHc
Confidence 34578999999999999999998762 122444455555544
No 60
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=65.36 E-value=2.4 Score=34.36 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=30.4
Q ss_pred eehhhhcccccchHHHHHHHhCCCCC----CcCCCCCHHHHHHHHHH
Q 033139 28 FALTSIKGIGRRLANIVCKKADVDMN----KRAGELSAAELDQLMVV 70 (126)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~~gI~p~----~k~~~Ls~~qi~~L~~~ 70 (126)
..|.+|+|||+++|.++-+. ||..- .+-+.|++.|..-|.-+
T Consensus 102 ~~l~~I~GvG~kta~~l~~~-Gi~tledL~~~~~~L~~~~~~Gl~~~ 147 (360)
T 2ihm_A 102 KLFTQVFGVGVKTANRWYQE-GLRTLDELREQPQRLTQQQKAGLQYY 147 (360)
T ss_dssp HHHHTSTTCCHHHHHHHHHT-TCCSHHHHHTCCTTCCHHHHHHHHTH
T ss_pred HHHhCCCCCCHHHHHHHHHc-CCCCHHHHHhcccchHHHHHHHHHHH
Confidence 46789999999999999887 88642 33456777666555433
No 61
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=65.09 E-value=3.8 Score=30.62 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=27.9
Q ss_pred heehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 033139 27 MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVV 71 (126)
Q Consensus 27 ~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i 71 (126)
.-.|..++|||+.+|..|+..+.=.|... -|..+.++..-+
T Consensus 114 ~~~L~~lpGIG~~TA~~il~~~~~~~~~~----vD~~v~Rv~~rl 154 (221)
T 1kea_A 114 RKAILDLPGVGKYTCAAVMCLAFGKKAAM----VDANFVRVINRY 154 (221)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCCCCCC----CCHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHhcCCCcce----ecHHHHHHHHHH
Confidence 45689999999999999997654334322 245566665544
No 62
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=63.97 E-value=2.3 Score=32.17 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=23.9
Q ss_pred ehheehhhhcccccchHHHHHHHh-CCCCCCcCC
Q 033139 25 KIMFALTSIKGIGRRLANIVCKKA-DVDMNKRAG 57 (126)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~~-gI~p~~k~~ 57 (126)
...-.|..++|||+.+|..|+-.+ |-.....++
T Consensus 135 ~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvd 168 (233)
T 2h56_A 135 TVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVG 168 (233)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTT
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCc
Confidence 455678899999999999999764 443234443
No 63
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=63.84 E-value=2.8 Score=31.43 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=30.7
Q ss_pred cCCCCeehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 033139 19 NVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVV 71 (126)
Q Consensus 19 ~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i 71 (126)
++|. ..-.|..++|||+.+|..|+..+.=.|.. .-|..+.++..-+
T Consensus 103 ~~p~---~~~~L~~lpGIG~~TA~~il~~a~~~~~~----~vD~~v~Rv~~rl 148 (225)
T 1kg2_A 103 KFPE---TFEEVAALPGVGRSTAGAILSLSLGKHFP----ILDGNVKRVLARC 148 (225)
T ss_dssp SCCC---SHHHHHTSTTCCHHHHHHHHHHHHCCSCC----CCCHHHHHHHHHH
T ss_pred CchH---HHHHHhcCCCCcHHHHHHHHHHhCCCCcc----eeCHHHHHHHHHH
Confidence 4554 34578999999999999999765323332 2455666665554
No 64
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=63.74 E-value=2.8 Score=31.41 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=17.7
Q ss_pred ehhhhcccccchHHHHHHHh
Q 033139 29 ALTSIKGIGRRLANIVCKKA 48 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~ 48 (126)
.|+.+.|||+++|.+|+..+
T Consensus 109 ~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 109 ALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHTSTTCCHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHH
Confidence 58999999999999998655
No 65
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=63.72 E-value=2.4 Score=34.40 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=26.6
Q ss_pred cccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhC
Q 033139 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 7 ~~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~g 49 (126)
++|-.+.=++|+|-.++ |.|||+.+|.+++++.|
T Consensus 220 ~q~id~~~L~G~D~~d~---------IpGIG~KtA~kLl~~~g 253 (379)
T 1ul1_X 220 EQFVDLCILLGSDYCES---------IRGIGPKRAVDLIQKHK 253 (379)
T ss_dssp HHHHHHHHHHHCSSSCC---------CTTCCHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCcCCC---------CCCcCHHHHHHHHHHcC
Confidence 55666777788776553 47999999999999876
No 66
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=63.66 E-value=2.6 Score=34.39 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=29.5
Q ss_pred heehhhhcccccchHHHHHHHhCCCCCCc-----CCCCCHHHHHHHHHH
Q 033139 27 MFALTSIKGIGRRLANIVCKKADVDMNKR-----AGELSAAELDQLMVV 70 (126)
Q Consensus 27 ~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k-----~~~Ls~~qi~~L~~~ 70 (126)
...|.+|+|||+++|.++-++ ||..--- -..|++.|..-|.-+
T Consensus 120 l~~l~~I~GvGpk~a~~ly~~-Gi~tledL~~~~g~kl~~~q~~Gl~~~ 167 (381)
T 1jms_A 120 FKLFTSVFGVGLKTAEKWFRM-GFRTLSKIQSDKSLRFTQMQKAGFLYY 167 (381)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT-TCCSHHHHHHCSSCCCCHHHHHHHHTH
T ss_pred HHHHHccCCCCHHHHHHHHHc-CCCcHHHHHhCcccchHHHHHHHHHHH
Confidence 346789999999999999887 9864221 225666655555443
No 67
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=63.42 E-value=2.9 Score=31.10 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=18.7
Q ss_pred ehhhhcccccchHHHHHHHhC
Q 033139 29 ALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~g 49 (126)
.|+.++|||+++|.+|...+.
T Consensus 108 ~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 108 LLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHH
Confidence 589999999999999997773
No 68
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=63.17 E-value=5.8 Score=32.58 Aligned_cols=38 Identities=13% Similarity=0.342 Sum_probs=29.7
Q ss_pred eehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033139 28 FALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (126)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~ 65 (126)
.-+..+.|||+.++.++++.+||..-.-+..++.+++.
T Consensus 253 lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~ 290 (435)
T 4ecq_A 253 MPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQ 290 (435)
T ss_dssp CBGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHH
T ss_pred CCHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHH
Confidence 34678999999999999999999865555555666664
No 69
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=62.77 E-value=3.1 Score=23.24 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=32.7
Q ss_pred hhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 033139 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVV 71 (126)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i 71 (126)
|..-.|++.....+.++.+|+ .......+++++...|.+.+
T Consensus 8 lAkel~~~~k~l~~~l~~~g~-~k~~~s~l~~~~~~~l~~~~ 48 (49)
T 1nd9_A 8 LAAERQTSVERLVQQFADAGI-RKSADDSVSAQEKQTLIDHL 48 (49)
T ss_dssp HHHHHSSSHHHHHHHHHHHTS-CCSSSSCEETTGGGHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHcCC-CCCCCCcCCHHHHHHHHHHh
Confidence 455569999999999999999 55556778998888887765
No 70
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L
Probab=62.59 E-value=14 Score=26.31 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=49.1
Q ss_pred ccchHHHHHHHhCCCCC------CcCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCCccceeehhhHHHHHHHH
Q 033139 37 GRRLANIVCKKADVDMN------KRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDD 110 (126)
Q Consensus 37 G~~~A~~Ic~~~gI~p~------~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg~~~h~i~~dL~~~~~~d 110 (126)
-+..|.-|.+.+|+.+. .+++.+|-+|+.+|.+.-.. . +...||...+++=
T Consensus 71 ~Ppas~Ll~ka~g~~~gs~~p~k~~vG~it~~qi~eIA~~K~~--d---------------------l~a~~l~~a~k~I 127 (140)
T 1mms_A 71 TPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMP--D---------------------LNANSLEAAMKII 127 (140)
T ss_dssp CCCHHHHHHHHHTCSSCCSSTTTSCCEEECHHHHHHHHHHHGG--G---------------------CCCSSHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCeEeeeEcHHHHHHHHHHHHH--h---------------------hccccHHHHHHHH
Confidence 37788888899998863 46899999999999998653 1 4678888888888
Q ss_pred HHHHHhcccce
Q 033139 111 LERLKKIRYGL 121 (126)
Q Consensus 111 I~rl~~I~sy~ 121 (126)
+---+.++|.+
T Consensus 128 ~GTArSmGi~V 138 (140)
T 1mms_A 128 EGTAKSMGIEV 138 (140)
T ss_dssp HHHHTTTTEEE
T ss_pred HHHHHcCeeEe
Confidence 77777777754
No 71
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=62.30 E-value=3 Score=35.59 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=21.9
Q ss_pred eehheehhhhcccccchHHHHHHHhCCC
Q 033139 24 QKIMFALTSIKGIGRRLANIVCKKADVD 51 (126)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~~gI~ 51 (126)
+.....|.+++|||+++|..|.+. ||.
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~-G~~ 119 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA-GID 119 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT-TCC
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc-CCC
Confidence 345566899999999999999986 554
No 72
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=62.28 E-value=3.1 Score=31.34 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=20.4
Q ss_pred hheehhhhcccccchHHHHHHH-hCC
Q 033139 26 IMFALTSIKGIGRRLANIVCKK-ADV 50 (126)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~-~gI 50 (126)
..-.|..++|||+.+|..|+.. +|.
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~a~g~ 136 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSVAFGV 136 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCccHHHHHHHHHHHCCC
Confidence 4567899999999999999975 454
No 73
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=61.98 E-value=3.6 Score=31.47 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=30.0
Q ss_pred ehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 25 KIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
.+.-+|+.++|||+++|.++.-.+ =+-.++++..|.++|.+
T Consensus 23 ~LI~~l~~LPGIG~KsA~RlA~hL--------L~~~~~~~~~La~al~~ 63 (212)
T 3vdp_A 23 KLIEELSKLPGIGPKTAQRLAFFI--------INMPLDEVRSLSQAIIE 63 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHH--------TTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHH--------HcCCHHHHHHHHHHHHH
Confidence 455688999999999999997544 23356677777777653
No 74
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.88 E-value=5.2 Score=24.77 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=17.6
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 50 VDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 50 I~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
.+|...-..+|.+|+..|+.++..
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~ 29 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCR 29 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhc
Confidence 445555566899999999888874
No 75
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=61.51 E-value=2.7 Score=31.92 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=24.9
Q ss_pred ehheehhhhcccccchHHHHHHHhCCCCC-CcCCC
Q 033139 25 KIMFALTSIKGIGRRLANIVCKKADVDMN-KRAGE 58 (126)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~-~k~~~ 58 (126)
.+.-.|+.++|||+.||..||-.+-=.|+ ..++|
T Consensus 147 ~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D 181 (232)
T 4b21_A 147 ELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADD 181 (232)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCcc
Confidence 35677999999999999999976543443 34444
No 76
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=61.24 E-value=2.8 Score=31.59 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=24.3
Q ss_pred ehheehhhhcccccchHHHHHHHhCCCCC-CcCCC
Q 033139 25 KIMFALTSIKGIGRRLANIVCKKADVDMN-KRAGE 58 (126)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~-~k~~~ 58 (126)
.+.-.|+.++|||+.+|..||-.+-=.|+ ..++|
T Consensus 143 e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fpv~D 177 (225)
T 2yg9_A 143 LVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGD 177 (225)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCCTTC
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCCCeeeCcc
Confidence 34567899999999999999976433343 34444
No 77
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=60.72 E-value=3.5 Score=32.50 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=25.5
Q ss_pred cccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhC
Q 033139 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 7 ~~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~g 49 (126)
++|-.+.=++|+|--. ..+.|||+++|.+++++ |
T Consensus 212 ~q~id~~~L~GsD~~p--------~GvpGiG~ktA~kli~~-g 245 (326)
T 1a76_A 212 DDLIDIAIFMGTDYNP--------GGVKGIGFKRAYELVRS-G 245 (326)
T ss_dssp HHHHHHHHHHCCTTST--------TTTTTCCHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCCC--------CCCCCcCHHHHHHHHHc-C
Confidence 5566677777755422 17899999999999998 5
No 78
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=60.52 E-value=2.9 Score=31.59 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=23.8
Q ss_pred hheehhhhcccccchHHHHHHHhCCCCC-CcCCC
Q 033139 26 IMFALTSIKGIGRRLANIVCKKADVDMN-KRAGE 58 (126)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~~gI~p~-~k~~~ 58 (126)
+.-.|+.++|||+.+|..||-.+-=.|+ ..+++
T Consensus 137 ~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD 170 (228)
T 3s6i_A 137 LIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADD 170 (228)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCCCEEeccc
Confidence 4667999999999999999965433333 44544
No 79
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.03 E-value=4.3 Score=26.20 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=15.4
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 033139 54 KRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 54 ~k~~~Ls~~qi~~L~~~i~~ 73 (126)
.+.+..|.+|+..|+..+..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~ 34 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLK 34 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHcc
Confidence 35666888888888888774
No 80
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=60.01 E-value=3 Score=32.27 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=21.8
Q ss_pred hheehhhhcccccchHHHHHHHhCCCC
Q 033139 26 IMFALTSIKGIGRRLANIVCKKADVDM 52 (126)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~~gI~p 52 (126)
..-.|..++|||+.+|..||-.+-=.|
T Consensus 205 ~~~~L~~lpGIG~~TA~~ill~~lg~~ 231 (282)
T 1mpg_A 205 AMKTLQTFPGIGRWTANYFALRGWQAK 231 (282)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHSCCS
T ss_pred HHHHHhcCCCcCHHHHHHHHHHhCCCC
Confidence 467799999999999999997653334
No 81
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=59.97 E-value=2.9 Score=33.19 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=26.6
Q ss_pred cccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhC
Q 033139 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 7 ~~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~g 49 (126)
++|-.+.=+.|+|--.. .+.|||+++|.+++++.|
T Consensus 224 ~q~id~~~L~G~Dy~p~--------gv~GiG~ktA~kli~~~g 258 (340)
T 1b43_A 224 EKLIELAILVGTDYNPG--------GIKGIGLKKALEIVRHSK 258 (340)
T ss_dssp HHHHHHHHHHCCTTSTT--------CSTTCCHHHHHHHHHTCS
T ss_pred HHHHHHHHhcCCCCCCC--------CCCCccHHHHHHHHHHcC
Confidence 55666677777655331 689999999999999876
No 82
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=59.69 E-value=3.2 Score=32.86 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=25.7
Q ss_pred cccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhC
Q 033139 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 7 ~~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~g 49 (126)
++|-.+.=+.|+|-- ..+.|||+++|.+++++.|
T Consensus 223 ~q~id~~~L~GsD~i---------pGv~GiG~KtA~kLl~~~g 256 (336)
T 1rxw_A 223 EQLIDIAILVGTDYN---------EGVKGVGVKKALNYIKTYG 256 (336)
T ss_dssp HHHHHHHHHHCBTTB---------CCCTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHhhcCCCCC---------CCCCCcCHHHHHHHHHHcC
Confidence 556666677775432 2589999999999999886
No 83
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=59.58 E-value=2.8 Score=32.79 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=29.7
Q ss_pred ehheehhhhcccccchHHHHHHH-hCCCCCCcCCCCCHHHHHHHHHHH
Q 033139 25 KIMFALTSIKGIGRRLANIVCKK-ADVDMNKRAGELSAAELDQLMVVV 71 (126)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~-~gI~p~~k~~~Ls~~qi~~L~~~i 71 (126)
...-.|..++|||+.+|..||-. +|-.....+ |-.+.++...+
T Consensus 208 ~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv----D~~v~r~~~rl 251 (290)
T 3i0w_A 208 ECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV----DTWVKKAMMSL 251 (290)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC----CHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCCCccee----cHHHHHHHHHh
Confidence 45567899999999999999976 454333333 45666665554
No 84
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=59.04 E-value=3.7 Score=29.67 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=25.3
Q ss_pred ccchhhccccCCCCeehheehhhhcccccchHHHHHH
Q 033139 10 QHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCK 46 (126)
Q Consensus 10 ~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~ 46 (126)
+++..+++-.+|.+. -.|..++|||+.+|..++-
T Consensus 89 k~i~~~a~~~vp~~~---~~L~~LpGVG~yTAdav~~ 122 (161)
T 4e9f_A 89 KTIVKFSDEYLTKQW---KYPIELHGIGKYGNDSYRI 122 (161)
T ss_dssp HHHHHHHHHHHHSCC---SSGGGSTTCCHHHHHHHHH
T ss_pred HHHHHHhCCcCCCCh---hhhhcCCCchHHHHHHHHH
Confidence 455566666677654 3688999999999998764
No 85
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=58.78 E-value=4.6 Score=25.89 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=17.7
Q ss_pred ehhhhcccccchHHHHHHHhC
Q 033139 29 ALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~g 49 (126)
.|..+.|||..+|..|++.+.
T Consensus 65 eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 65 DLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHh
Confidence 378899999999999988764
No 86
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=58.72 E-value=3.2 Score=32.37 Aligned_cols=32 Identities=34% Similarity=0.281 Sum_probs=24.0
Q ss_pred hheehhhhcccccchHHHHHHH-hCCCCCCcCCC
Q 033139 26 IMFALTSIKGIGRRLANIVCKK-ADVDMNKRAGE 58 (126)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~-~gI~p~~k~~~ 58 (126)
+.-.|..++|||+.+|..||-. +| .....+++
T Consensus 208 ~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD 240 (295)
T 2jhn_A 208 AYEYLTSFKGIGRWTAELVLSIALG-KNVFPADD 240 (295)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTC
T ss_pred HHHHHhcCCCcCHHHHHHHHHHccC-CCcccchH
Confidence 4667899999999999999976 45 32335554
No 87
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=58.70 E-value=3.6 Score=32.78 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=26.5
Q ss_pred cccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhC
Q 033139 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 7 ~~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~g 49 (126)
++|-.+.=+.|+|--.. .+.|||+++|.+++++.|
T Consensus 221 ~q~id~~~L~G~D~~p~--------Gv~GIG~KtA~kLi~~~g 255 (346)
T 2izo_A 221 EQLIDIGILIGTDYNPD--------GIRGIGPERALKIIKKYG 255 (346)
T ss_dssp HHHHHHHHHHCCSSSTT--------CSTTCCHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCCCCC--------CCCCcCHHHHHHHHHHcC
Confidence 55666777778654221 689999999999999987
No 88
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=56.31 E-value=4.6 Score=30.77 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=21.7
Q ss_pred ehhhhcccccchHHHHHHHhCCCCCCcCCCC
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGEL 59 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~L 59 (126)
.|..+.|||+++|.+|.+.=.-.|-..+.+|
T Consensus 133 eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL 163 (205)
T 2i5h_A 133 QLELLPGVGKKMMWAIIEERKKRPFESFEDI 163 (205)
T ss_dssp GGGGSTTCCHHHHHHHHHHHHHSCCCSHHHH
T ss_pred HHhcCCCcCHHHHHHHHHHHhcCCCCCHHHH
Confidence 4788999999999999864322444444444
No 89
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_J
Probab=56.06 E-value=28 Score=25.44 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=43.3
Q ss_pred ccchHHHHHHHhCCCCC--------CcCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCCccceeehhhHHHHHH
Q 033139 37 GRRLANIVCKKADVDMN--------KRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLR 108 (126)
Q Consensus 37 G~~~A~~Ic~~~gI~p~--------~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg~~~h~i~~dL~~~~~ 108 (126)
-+..|.-|.+.+|+.+. .+++.+|-+|+.+|.+.-.. . +...||...++
T Consensus 75 ~Ppas~Ll~Ka~g~~~gs~~~~k~i~~vG~it~~qi~eIA~~K~~--d---------------------l~a~~l~~avk 131 (166)
T 3iz5_J 75 VPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRN--R---------------------SMAKEMAGTVK 131 (166)
T ss_dssp TTTTHHHHHHHHTCCSCCSSTTTSCSSCCCCCHHHHHHHHHHHTT--T---------------------SCCSCHHHHHH
T ss_pred cCcHHHHHHHhcCCCCCCCCCCCccceeeEEeHHHHHHHHHHHHh--h---------------------hcccCHHHHHH
Confidence 57889999999998763 34889999999999988653 1 35677777777
Q ss_pred HHHHHHHhcccc
Q 033139 109 DDLERLKKIRYG 120 (126)
Q Consensus 109 ~dI~rl~~I~sy 120 (126)
+=+---+.++|.
T Consensus 132 ~IlGTArSmGi~ 143 (166)
T 3iz5_J 132 EILGTCVSVGCT 143 (166)
T ss_dssp HHHHHSCC----
T ss_pred HhHheeeeeeEE
Confidence 665555555554
No 90
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=56.03 E-value=2.7 Score=27.64 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=37.1
Q ss_pred cccchhhccccCCCCeehheehhhhcccccchHHHHHHHhCC---CCCCcCCCCCHHHHHHHHHHHhC
Q 033139 9 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADV---DMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 9 ~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~gI---~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
|+.|..|.-=||+.+|+ .....++|++.|+ -.+.=-++||+.|+.+|...+++
T Consensus 1 ~~~M~vlV~YDI~~~kr------------r~kv~k~l~~yGl~rvQ~SVFe~~lt~~~~~~L~~~L~~ 56 (91)
T 3exc_X 1 FQGMKLLVVYDVSDDSK------------RNKLANNLKKLGLERIQRSAFEGDMDSQRMKDLVRVVKL 56 (91)
T ss_dssp ---CEEEEEEECCSHHH------------HHHHHHHHHHTTCEEEETTEEEEECC--CHHHHHHHHHH
T ss_pred CCceEEEEEEeCCCchH------------HHHHHHHHHHhCCccceeeEEEEECCHHHHHHHHHHHHH
Confidence 56788888888887753 2677888999996 44555678999999999888874
No 91
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=56.00 E-value=4 Score=32.24 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=16.2
Q ss_pred hhcccccchHHHHHHHhC
Q 033139 32 SIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 32 ~IyGIG~~~A~~Ic~~~g 49 (126)
.+.|||+++|.+++++.|
T Consensus 207 GVpGIG~KTA~kLL~~~g 224 (290)
T 1exn_A 207 GVEGIGAKRGYNIIREFG 224 (290)
T ss_dssp CCTTCCHHHHHHHHHHHC
T ss_pred CCCcCCHhHHHHHHHHcC
Confidence 489999999999999876
No 92
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=55.10 E-value=5.4 Score=30.82 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=31.0
Q ss_pred eehheehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 24 QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
..+.-+|+.++|||+++|.++.-.+ =+-.++++..|.++|.
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA~hL--------L~~~~~~~~~La~al~ 48 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLAFHL--------FEQPREDIERLASALL 48 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHH--------SSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhHCCCCCHHHHHHHHHHH--------HcCCHHHHHHHHHHHH
Confidence 4566789999999999999997543 2335677777777765
No 93
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Probab=55.04 E-value=32 Score=24.55 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=47.5
Q ss_pred ccchHHHHHHHhCCCC------CCcCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCCccceeeh--hhHHHHHH
Q 033139 37 GRRLANIVCKKADVDM------NKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVS--NALDMKLR 108 (126)
Q Consensus 37 G~~~A~~Ic~~~gI~p------~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg~~~h~i~--~dL~~~~~ 108 (126)
-+..|.-|.+.+|+.+ ..+++.+|-+|+.+|.+.-.. +.- +.. .||...++
T Consensus 72 ~Ppas~Ll~kaag~~~gs~~p~~~~vG~it~~qv~eIA~~K~~-d~~--------------------l~a~~~~l~~a~k 130 (145)
T 2ftc_G 72 QPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQ-DEA--------------------FALQDVPLSSVVR 130 (145)
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCcCcceEcHHHHHHHHHHhCc-chh--------------------ccCccCCHHHHHH
Confidence 3678888889999865 346789999999999987653 111 355 78888888
Q ss_pred HHHHHHHhcccce
Q 033139 109 DDLERLKKIRYGL 121 (126)
Q Consensus 109 ~dI~rl~~I~sy~ 121 (126)
+=+---+.++|.+
T Consensus 131 ~I~GTArSmGi~V 143 (145)
T 2ftc_G 131 SIIGSARSLGIRV 143 (145)
T ss_pred HHHHHHhcCeEEE
Confidence 8777777777754
No 94
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=55.00 E-value=4.6 Score=23.54 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHh
Q 033139 59 LSAAELDQLMVVVA 72 (126)
Q Consensus 59 Ls~~qi~~L~~~i~ 72 (126)
+|.+|+..|....+
T Consensus 4 ft~~Ql~~Le~~F~ 17 (56)
T 3a03_A 4 FSRSQVLELERRFL 17 (56)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 45566666655555
No 95
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=54.93 E-value=12 Score=28.54 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=29.3
Q ss_pred hHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 40 LANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 40 ~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
.+.++++.+||+ ++|+.+||-+|..+|.+.+.+
T Consensus 247 ~~~~~l~~~~~~-~~R~e~l~~~~f~~l~~~~~~ 279 (285)
T 1zq9_A 247 KIQQILTSTGFS-DKRARSMDIDDFIRLLHGFNA 279 (285)
T ss_dssp HHHHHHHHHTCT-TCBGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCC-CCChhhCCHHHHHHHHHHHHH
Confidence 356788999998 789999999999999999975
No 96
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=54.82 E-value=12 Score=30.03 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=33.3
Q ss_pred cccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 36 IGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 36 IG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
+-..++..+++.+||+++++..++++++.+.|.+.+++
T Consensus 331 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 368 (447)
T 2i0z_A 331 VPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKE 368 (447)
T ss_dssp SCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhhC
Confidence 44567888999999999999999999999999988875
No 97
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.29 E-value=6.4 Score=23.90 Aligned_cols=17 Identities=18% Similarity=0.044 Sum_probs=11.3
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..+|.+|+..|+.+++.
T Consensus 12 t~ft~~Q~~~Le~~F~~ 28 (70)
T 2djn_A 12 TIYSSFQLAALQRRFQK 28 (70)
T ss_dssp CSSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 34577777777777664
No 98
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=54.28 E-value=5.1 Score=34.44 Aligned_cols=42 Identities=31% Similarity=0.325 Sum_probs=30.5
Q ss_pred heehhhhcccccchHHHHHHHhCCC--------CCCcCCCCCHHHHHHHH
Q 033139 27 MFALTSIKGIGRRLANIVCKKADVD--------MNKRAGELSAAELDQLM 68 (126)
Q Consensus 27 ~~aLt~IyGIG~~~A~~Ic~~~gI~--------p~~k~~~Ls~~qi~~L~ 68 (126)
...|+.|.|||+.+|..++++.|== ...+..-+++.|+.+|.
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELRedGIGekqarrI~ 516 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDGLTDAQIRELK 516 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHHHTTCCHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHHHccccHHHHHHHh
Confidence 4778999999999999999998821 12244556666666554
No 99
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.04 E-value=7.2 Score=24.15 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=14.0
Q ss_pred cCCCCCHHHHHHHHHHHhC
Q 033139 55 RAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 55 k~~~Ls~~qi~~L~~~i~~ 73 (126)
+-...|.+|+..|+..+..
T Consensus 10 kr~~~t~~Ql~~Le~~F~~ 28 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQ 28 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhc
Confidence 4455788888888888774
No 100
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=53.31 E-value=4.1 Score=32.99 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.4
Q ss_pred ehheehhhhcccccchHHHHHHHh
Q 033139 25 KIMFALTSIKGIGRRLANIVCKKA 48 (126)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~~ 48 (126)
...-.|..++|||+.+|..||-.+
T Consensus 250 ~~~~~L~~LpGIGp~TA~~ill~a 273 (360)
T 2xhi_A 250 EAHKALCILPGVGTCVADKICLMA 273 (360)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHh
Confidence 456678999999999999999653
No 101
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=52.83 E-value=6.3 Score=23.21 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=11.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..+|.+|+..|+..++.
T Consensus 8 t~ft~~Q~~~Le~~F~~ 24 (61)
T 2hdd_A 8 TAFSSEQLARLKREFNE 24 (61)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 34677777777777664
No 102
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=52.49 E-value=5.3 Score=32.17 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=26.1
Q ss_pred ccccccchhhccccCCCCeehheehhhhcccccchHHHHHHHhC
Q 033139 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 6 ~~~~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~g 49 (126)
.++|-.+.=+.|+|- +..|.|||+++|.+++++.|
T Consensus 212 ~~q~id~~~L~G~D~---------~pgv~GiG~ktA~kli~~~~ 246 (352)
T 3qe9_Y 212 EEKFRYMCILSGCDY---------LSSLRGIGLAKACKVLRLAN 246 (352)
T ss_dssp HHHHHHHHHHHCCSS---------SCCCTTCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCC---------CCCCCCeeHHHHHHHHHHhC
Confidence 355666666777543 23689999999999999985
No 103
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=52.32 E-value=7 Score=24.40 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..+|.+|+..|+.+++.
T Consensus 12 t~ft~~Q~~~Le~~F~~ 28 (80)
T 2cue_A 12 TSFTQEQIEALEKEFER 28 (80)
T ss_dssp CCSCHHHHHHHHHHHTT
T ss_pred CccCHHHHHHHHHHHhc
Confidence 34677777777777764
No 104
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=50.76 E-value=6.1 Score=31.55 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=22.6
Q ss_pred cccCCCCeehheehhhhcccccchHHHHHHHh
Q 033139 17 NTNVDGKQKIMFALTSIKGIGRRLANIVCKKA 48 (126)
Q Consensus 17 g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~ 48 (126)
|-++|. ..-.|..++|||+.+|..|+.-+
T Consensus 110 ~g~~p~---~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 110 GGKVPD---DPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp TTCCCC---SHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCChh---HHHHHhcCCCcCHHHHHHHHHHH
Confidence 334553 45678999999999999999775
No 105
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=50.46 E-value=6.9 Score=25.54 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=16.2
Q ss_pred hhhhcccccchHHHHHHHh
Q 033139 30 LTSIKGIGRRLANIVCKKA 48 (126)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~~ 48 (126)
+..+.|||++++..|-+++
T Consensus 60 ~~~L~giG~ki~~~L~e~L 78 (87)
T 2kp7_A 60 AKILQHFGDRLCRMLDEKL 78 (87)
T ss_dssp HHTCTTTCHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHHHHHHH
Confidence 4689999999999987765
No 106
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=50.32 E-value=8.3 Score=23.23 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..+|.+|+..|..+++.
T Consensus 8 t~ft~~Q~~~Le~~F~~ 24 (68)
T 1yz8_P 8 THFTSQQLQQLEATFQR 24 (68)
T ss_dssp CCCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 45788999999888875
No 107
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=50.13 E-value=7.7 Score=25.36 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=14.8
Q ss_pred cCCCCCHHHHHHHHHHHhC
Q 033139 55 RAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 55 k~~~Ls~~qi~~L~~~i~~ 73 (126)
+.+..|.+|+..|++.+..
T Consensus 14 k~k~~t~~Ql~~Le~~F~~ 32 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN 32 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHh
Confidence 4567888888888888774
No 108
>3j21_H 50S ribosomal protein L11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.76 E-value=35 Score=24.81 Aligned_cols=61 Identities=8% Similarity=0.181 Sum_probs=43.4
Q ss_pred cchHHHHHHHhCCCC------CCcCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCCccceeehhhHHHHHHHHH
Q 033139 38 RRLANIVCKKADVDM------NKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDL 111 (126)
Q Consensus 38 ~~~A~~Ic~~~gI~p------~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg~~~h~i~~dL~~~~~~dI 111 (126)
+..|.-|.+.+|+.. ..+++.+|-+|+..|.+.-.. . +...||...+++=+
T Consensus 71 Ppas~Ll~Ka~g~~kgs~~p~k~~vG~it~~qi~eIA~~K~~--d---------------------l~a~~l~~a~k~I~ 127 (164)
T 3j21_H 71 PPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKKD--Q---------------------MLALTLKAAAKEVI 127 (164)
T ss_dssp SSSTTHHHHHHCCCSCCSSTTTCCSCCCCHHHHHHHHHHHTT--T---------------------TTCCSHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCCCCCceeeeeeHHHHHHHHHHHHh--h---------------------hcccCHHHHHHHHH
Confidence 778888889999832 356899999999999998653 2 35667777777766
Q ss_pred HHHHhcccce
Q 033139 112 ERLKKIRYGL 121 (126)
Q Consensus 112 ~rl~~I~sy~ 121 (126)
---+.++|.+
T Consensus 128 GTArSmGi~V 137 (164)
T 3j21_H 128 GTALSMGVTV 137 (164)
T ss_dssp HHHHCCC---
T ss_pred HHhhcceEEE
Confidence 6666666653
No 109
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=49.19 E-value=6.1 Score=23.99 Aligned_cols=17 Identities=24% Similarity=0.071 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..+|.+|+..|+.+++.
T Consensus 12 t~ft~~Q~~~Le~~F~~ 28 (70)
T 2cra_A 12 IPYSKGQLRELEREYAA 28 (70)
T ss_dssp CCSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 34677777777777664
No 110
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=48.78 E-value=6.5 Score=23.06 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHh
Q 033139 59 LSAAELDQLMVVVA 72 (126)
Q Consensus 59 Ls~~qi~~L~~~i~ 72 (126)
+|.+|+..|...++
T Consensus 6 ft~~Q~~~Le~~F~ 19 (60)
T 3a02_A 6 FTSFQLEELEKAFS 19 (60)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 45566666665555
No 111
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=48.78 E-value=6.5 Score=23.23 Aligned_cols=16 Identities=25% Similarity=0.110 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|+.+++.
T Consensus 9 ~ft~~q~~~Le~~F~~ 24 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQK 24 (62)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3566666666666653
No 112
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.65 E-value=7.3 Score=27.25 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCC
Q 033139 57 GELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDG 93 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg 93 (126)
.+|+++|+..|-+++.. ..+..=-.|=|+|+-+|
T Consensus 10 ~~l~~ee~~el~~WL~~---l~Ls~~~rn~rRDFSdG 43 (127)
T 2ee7_A 10 SSVDEEALHQLYLWVDN---IPLSRPKRNLSRDFSDG 43 (127)
T ss_dssp SSCCHHHHHHHHHHHHH---SCCSCCSSCHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHc---CCCCCCCCchhhhccch
Confidence 47999999999999984 44433345677888877
No 113
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=48.64 E-value=6.5 Score=23.77 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|+.+++.
T Consensus 13 ~ft~~q~~~Le~~F~~ 28 (70)
T 2da2_A 13 RFTDYQLRVLQDFFDA 28 (70)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4677777777777664
No 114
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=48.45 E-value=6.6 Score=23.75 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..+|.+|+..|+.+++.
T Consensus 12 t~ft~~q~~~Le~~F~~ 28 (70)
T 2da1_A 12 TRITDDQLRVLRQYFDI 28 (70)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 45688888888888764
No 115
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.40 E-value=6.5 Score=24.41 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|+.+++.
T Consensus 13 ~ft~~Q~~~Le~~F~~ 28 (80)
T 2dmq_A 13 SFKHHQLRTMKSYFAI 28 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4567777777666653
No 116
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=48.29 E-value=6.6 Score=23.83 Aligned_cols=16 Identities=13% Similarity=0.034 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|+.+++.
T Consensus 13 ~ft~~q~~~Le~~F~~ 28 (70)
T 2e1o_A 13 RFSNDQTIELEKKFET 28 (70)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4677777777777664
No 117
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=48.03 E-value=11 Score=23.95 Aligned_cols=13 Identities=8% Similarity=0.429 Sum_probs=8.2
Q ss_pred CCCHHHHHHHHHH
Q 033139 58 ELSAAELDQLMVV 70 (126)
Q Consensus 58 ~Ls~~qi~~L~~~ 70 (126)
.+|.+|++.|+.+
T Consensus 23 ~ft~~Ql~~Le~F 35 (80)
T 1wh7_A 23 KFTAEQKEKMLAF 35 (80)
T ss_dssp CCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 3677777777643
No 118
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=47.80 E-value=9 Score=23.45 Aligned_cols=15 Identities=7% Similarity=0.023 Sum_probs=10.1
Q ss_pred CCCHHHHHHHHHHHh
Q 033139 58 ELSAAELDQLMVVVA 72 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~ 72 (126)
.+|.+|+..|+.++.
T Consensus 8 ~ft~~Q~~~Le~~F~ 22 (73)
T 2hi3_A 8 GPTEDQVEILEYNFN 22 (73)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 356777777777765
No 119
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.67 E-value=6.8 Score=24.48 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|+.+++.
T Consensus 23 ~ft~~Q~~~Le~~F~~ 38 (80)
T 2dmt_A 23 VFTELQLMGLEKRFEK 38 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4677777777777764
No 120
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.59 E-value=7 Score=24.34 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=10.5
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|+.+++.
T Consensus 13 ~ft~~Q~~~Le~~F~~ 28 (80)
T 2dms_A 13 TFTRAQLDVLEALFAK 28 (80)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4577777777666653
No 121
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=47.45 E-value=7 Score=23.69 Aligned_cols=16 Identities=6% Similarity=-0.178 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|...++.
T Consensus 8 ~ft~~Q~~~Le~~F~~ 23 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHF 23 (68)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcc
Confidence 4677788887777764
No 122
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=46.62 E-value=5.3 Score=35.83 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=25.3
Q ss_pred ccccccchhhcc--ccCCCCeehheehhhhcccccchHHHHHHHhC
Q 033139 6 NEDFQHILRVLN--TNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 6 ~~~~~~mvrI~g--~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~~g 49 (126)
+++|-++.=+.| +|- +..++|||+++|.+++++.|
T Consensus 176 p~q~id~~~L~GD~sDn---------ipGVpGIG~KtA~kLl~~~g 212 (832)
T 1bgx_T 176 PDQWADYRALTGDESDN---------LPGVKGIGEKTARKLLEEWG 212 (832)
T ss_dssp GGGTTTTTTSSCCSSSC---------CCCCCCSSSCTTTTTGGGTT
T ss_pred HHHHHHHHHhcCCcccc---------CCCCCCcCchHHHHHHHHCC
Confidence 355666666666 431 22489999999999999887
No 123
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=46.61 E-value=6 Score=31.64 Aligned_cols=42 Identities=19% Similarity=0.371 Sum_probs=31.0
Q ss_pred ehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
.|+.++|||+++|.+|.+.+.=..-.++.+|.+ ++. +.+.+.
T Consensus 58 ~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~-~~p-~l~ll~ 99 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEILESGHLRKLDHISE-SVP-VLELFS 99 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCT-THH-HHHHHH
T ss_pred HHhcCCCccHHHHHHHHHHHHcCCchHHHHHhh-hhH-HHHHHh
Confidence 489999999999999999877666666777743 333 555553
No 124
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=46.55 E-value=17 Score=21.83 Aligned_cols=16 Identities=6% Similarity=0.202 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|...++.
T Consensus 8 ~ft~~Q~~~Le~~F~~ 23 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQ 23 (68)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHhc
Confidence 4566677776666654
No 125
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=46.53 E-value=4.8 Score=24.64 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCccCChhh
Q 033139 57 GELSAAELDQLMVVVANPRQFKIPDWF 83 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~~~~~~iP~w~ 83 (126)
+.||++|+..|..+|.+ ...-|.|.
T Consensus 65 ~~ls~~ei~~l~~yl~~--~~~~~~W~ 89 (90)
T 1cyi_A 65 DRLSEEEIQAVAEYVFK--QATDAAWK 89 (90)
T ss_dssp TTSCHHHHHHHHHHHHH--HHHHTCCC
T ss_pred ccCCHHHHHHHHHHHHh--cccccCCC
Confidence 47999999999999985 23235563
No 126
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=46.42 E-value=12 Score=22.23 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|..+++.
T Consensus 9 ~ft~~q~~~Le~~F~~ 24 (66)
T 1bw5_A 9 VLNEKQLHTLRTCYAA 24 (66)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc
Confidence 4566666666666653
No 127
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=45.88 E-value=10 Score=23.08 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHHHHh
Q 033139 58 ELSAAELDQLMVVVA 72 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~ 72 (126)
-+|.+|+..|+..+.
T Consensus 7 ~ft~~Q~~~Le~~F~ 21 (72)
T 1uhs_A 7 TMTEDQVEILEYNFN 21 (72)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 356666666666665
No 128
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=45.06 E-value=4.6 Score=34.32 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=17.1
Q ss_pred eehhhhcccccchHHHHHHHhCCCCC
Q 033139 28 FALTSIKGIGRRLANIVCKKADVDMN 53 (126)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~~gI~p~ 53 (126)
|-|..|.|||..+|-+|..++|++++
T Consensus 44 y~l~~i~gigf~~aD~ia~~~g~~~~ 69 (574)
T 3e1s_A 44 FTLTEVEGIGFLTADKLWQARGGALD 69 (574)
T ss_dssp CGGGTSSSCCHHHHHTTC-------C
T ss_pred cccCCcCCCCHHHHHHHHHHcCCCCC
Confidence 66788999999999999999999865
No 129
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=44.71 E-value=7.2 Score=23.64 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
+.||++|+..|..+|.+
T Consensus 66 ~~ls~~ei~~l~~yl~~ 82 (89)
T 1c6r_A 66 GTLDDDEIAAVAAYVYD 82 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 47999999999999985
No 130
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=44.65 E-value=12 Score=27.89 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=21.1
Q ss_pred ehhhhcccccchHHHHHHHhCCCCCCcCCCCCH
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 61 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~ 61 (126)
-++.+.|||+.++.+ ++.+||.. +++|-.
T Consensus 185 pv~~l~giG~~~~~~-L~~~Gi~T---igdL~~ 213 (221)
T 1im4_A 185 DIDEIPGIGSVLARR-LNELGIQK---LRDILS 213 (221)
T ss_dssp BGGGSTTCCHHHHHH-HHHTTCCB---TTC---
T ss_pred CcccccCCCHHHHHH-HHHcCCCc---HHHHHC
Confidence 368899999998887 58999985 555543
No 131
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=44.43 E-value=12 Score=22.41 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHh
Q 033139 59 LSAAELDQLMVVVA 72 (126)
Q Consensus 59 Ls~~qi~~L~~~i~ 72 (126)
+|.+|+..|..+++
T Consensus 8 ft~~q~~~Le~~F~ 21 (67)
T 2k40_A 8 FTQNQIEVLENVFR 21 (67)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH
Confidence 45555555555554
No 132
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=44.06 E-value=16 Score=28.70 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=27.6
Q ss_pred ehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQ 66 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~ 66 (126)
-++.+.|||+.++.++ +.+||..-.-+..++.+++.+
T Consensus 179 pv~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~~ 215 (352)
T 1jx4_A 179 DIADVPGIGNITAEKL-KKLGINKLVDTLSIEFDKLKG 215 (352)
T ss_dssp BGGGSTTCCHHHHHHH-HTTTCCBGGGGGSSCHHHHHH
T ss_pred CCCcccccCHHHHHHH-HHcCCchHHHHHCCCHHHHHH
Confidence 3688999999988874 899998755555666665543
No 133
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=43.83 E-value=9.1 Score=30.13 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=30.6
Q ss_pred cccCCCCeehheehhh-hcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 17 NTNVDGKQKIMFALTS-IKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 17 g~~l~~~K~v~~aLt~-IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
|-++|.. .-.|.. ++|||+.+|..|+..+-=.|.. .-|..+.++.+-+.
T Consensus 120 ~g~~p~~---~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~----~VDt~V~Rv~~Rlg 169 (287)
T 3n5n_X 120 GGHMPRT---AETLQQLLPGVGRYTAGAIASIAFGQATG----VVDGNVARVLCRVR 169 (287)
T ss_dssp TTCCCSS---HHHHHHHSTTCCHHHHHHHHHHHSCCCCC----CCCHHHHHHHHHHT
T ss_pred CCCCcHH---HHHHHHHcCCCCHHHHHHHHHHhcCCCCc----cccHHHHHHHHHhC
Confidence 3445543 345555 9999999999998754222322 23557777766653
No 134
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=43.16 E-value=8.8 Score=23.75 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|..+++.
T Consensus 15 ~ft~~Q~~~Le~~F~~ 30 (77)
T 1nk2_P 15 LFTKAQTYELERRFRQ 30 (77)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhh
Confidence 4677888888777764
No 135
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.25 E-value=9.5 Score=23.72 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=11.9
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|+.+++.
T Consensus 14 ~ft~~Q~~~Le~~F~~ 29 (80)
T 2da4_A 14 QFSDRDLATLKKYWDN 29 (80)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4677888888777775
No 136
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=40.94 E-value=19 Score=21.76 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=11.0
Q ss_pred CCCCHHHHHHHHHHHh
Q 033139 57 GELSAAELDQLMVVVA 72 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~ 72 (126)
..++.+|+..|.+++.
T Consensus 12 ~~~~~~q~~~Le~~f~ 27 (73)
T 1x2n_A 12 GVLPKHATNVMRSWLF 27 (73)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH
Confidence 3567777777777764
No 137
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=40.71 E-value=10 Score=23.70 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|..++..
T Consensus 28 ~ft~~Q~~~Le~~F~~ 43 (84)
T 2kt0_A 28 VFSSTQLCVLNDRFQR 43 (84)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4677777777777664
No 138
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=40.58 E-value=16 Score=24.26 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.2
Q ss_pred eehhhhcccccchHHHHHHHhCCCC
Q 033139 28 FALTSIKGIGRRLANIVCKKADVDM 52 (126)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~~gI~p 52 (126)
-.++.+.|||+..+.++-+ .||+.
T Consensus 18 K~V~evpGIG~~~~~~L~~-~Gf~k 41 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE-RGFDK 41 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH-TTCCS
T ss_pred CCcccCCCcCHHHHHHHHH-cCccH
Confidence 3568999999999999876 78885
No 139
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=40.36 E-value=23 Score=32.20 Aligned_cols=47 Identities=19% Similarity=0.382 Sum_probs=37.5
Q ss_pred eehheehhhhcccccchHHHHHHHhCCCC--------CCcC--CCCCHHHHHHHHHH
Q 033139 24 QKIMFALTSIKGIGRRLANIVCKKADVDM--------NKRA--GELSAAELDQLMVV 70 (126)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~~gI~p--------~~k~--~~Ls~~qi~~L~~~ 70 (126)
..|.++|..|+|+|...|..|.+.=.=.| -.|+ +.++...++.|.++
T Consensus 829 ~~Ir~gl~~Ikgvg~~~~~~Iv~~R~~g~~f~s~~Df~~R~~~~~~~~~~le~Li~a 885 (910)
T 2hnh_A 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMS 885 (910)
T ss_dssp SCEECBGGGSTTCCHHHHHHHHHHHHTTCCCSSHHHHTTSSCSSSSCHHHHHHHHHT
T ss_pred CeeehhHHhcCCCCHHHHHHHHHHHhcCCCCCCHHHHHHhccccCCCHHHHHHHHHC
Confidence 47899999999999999999987664223 3455 36899999999874
No 140
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=40.15 E-value=14 Score=23.33 Aligned_cols=18 Identities=6% Similarity=-0.184 Sum_probs=13.4
Q ss_pred CCCCCHHHHHHHHHHHhC
Q 033139 56 AGELSAAELDQLMVVVAN 73 (126)
Q Consensus 56 ~~~Ls~~qi~~L~~~i~~ 73 (126)
=..+|.+|+..|+..++.
T Consensus 32 Rt~ft~~Ql~~Le~~F~~ 49 (88)
T 2r5y_A 32 RTSYTRYQTLELEKEFHF 49 (88)
T ss_dssp CCCCCHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHhc
Confidence 345688888888888775
No 141
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.97 E-value=7.2 Score=24.91 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHhCCCCccCChhhhhccc
Q 033139 58 ELSAAELDQLMVVVANPRQFKIPDWFLNRQK 88 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~ 88 (126)
.-+.+++.+|.+.+.=| .-.|-.||-|||-
T Consensus 29 ~Ps~eei~~LA~~lgL~-~~VVrVWFqNrRa 58 (71)
T 2da7_A 29 EPNSDELLKISIAVGLP-QEFVKEWFEQRKV 58 (71)
T ss_dssp SCCHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC-HHHHHHHHhhccc
Confidence 45778899999888743 2446889999985
No 142
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=39.84 E-value=15 Score=23.16 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=11.6
Q ss_pred CCCCCHHHHHHHHHHHhC
Q 033139 56 AGELSAAELDQLMVVVAN 73 (126)
Q Consensus 56 ~~~Ls~~qi~~L~~~i~~ 73 (126)
-..++.+|+..|..++..
T Consensus 31 r~~ft~~q~~~Le~~f~~ 48 (87)
T 1mnm_C 31 GHRFTKENVRILESWFAK 48 (87)
T ss_dssp TCCCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHH
Confidence 345677777777776654
No 143
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=39.71 E-value=15 Score=24.16 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=18.6
Q ss_pred ehhhhcccccchHHHHHHHhCCCC
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDM 52 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p 52 (126)
-|+.+++||+++++.+ .++||..
T Consensus 5 ~L~~LPNiG~~~e~~L-~~vGI~s 27 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDL-IKAGIKT 27 (93)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCS
T ss_pred HhhcCCCCCHHHHHHH-HHcCCCC
Confidence 3788999999988775 7888875
No 144
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ...
Probab=38.53 E-value=45 Score=24.22 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=45.2
Q ss_pred ccchHHHHHHHhCCCC------CCcCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCCccceeehhhHHHHHHHH
Q 033139 37 GRRLANIVCKKADVDM------NKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDD 110 (126)
Q Consensus 37 G~~~A~~Ic~~~gI~p------~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg~~~h~i~~dL~~~~~~d 110 (126)
-+..|.-|.+.+|+.. ..+++.+|-+|+..|.+.-.. . +...||...+++=
T Consensus 68 ~Ppas~Ll~kaagi~kgs~~p~k~~vG~it~~qv~eIA~~K~~--d---------------------l~a~~l~~a~k~I 124 (162)
T 1vq8_I 68 VPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHP--D---------------------LLSYDLTNAAKEV 124 (162)
T ss_dssp CCCHHHHHHHTTSCCSCCSSTTTSCCEEECHHHHHHHHHHTTT--T---------------------CCCSSHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCceeeeeeHHHHHHHHHHHHH--h---------------------hcccCHHHHHHHH
Confidence 4778888889999653 346899999999999987643 1 4567777777776
Q ss_pred HHHHHhcccce
Q 033139 111 LERLKKIRYGL 121 (126)
Q Consensus 111 I~rl~~I~sy~ 121 (126)
+---+.++|.+
T Consensus 125 ~GTArSmGi~V 135 (162)
T 1vq8_I 125 VGTCTSLGVTI 135 (162)
T ss_dssp HHHTTTTTEEE
T ss_pred HhhhHhCeEEE
Confidence 66666666643
No 145
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=38.43 E-value=12 Score=23.22 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=9.3
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
-+|.+|+..|+..++.
T Consensus 10 ~~t~~ql~~LE~~F~~ 25 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH 25 (69)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc
Confidence 3566666666666553
No 146
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=38.39 E-value=42 Score=25.73 Aligned_cols=62 Identities=6% Similarity=0.110 Sum_probs=47.9
Q ss_pred ccchHHHHHHHhCCCCC------CcCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCCccceeehhhHHHHHHHH
Q 033139 37 GRRLANIVCKKADVDMN------KRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDD 110 (126)
Q Consensus 37 G~~~A~~Ic~~~gI~p~------~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg~~~h~i~~dL~~~~~~d 110 (126)
-+..|.-|.+.+|+.+. .+++.+|-+|+.+|.+.-.. - +...||...+++=
T Consensus 143 tPpaS~LLkKAagi~kGs~kp~~~~vG~IT~~qV~eIAk~K~~---d--------------------l~a~~Le~avK~I 199 (224)
T 3bbo_K 143 TPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLP---D--------------------LNCTTIESAMRII 199 (224)
T ss_dssp CCCTTHHHHHHHTCSSCCSSTTTSCCEEECHHHHHHHHHHTCT---T--------------------SCCSSHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCceeeeecHHHHHHHHHHHHh---h--------------------hcCcCHHHHHHHH
Confidence 46778888899998763 46788999999999997653 1 4678888888887
Q ss_pred HHHHHhcccce
Q 033139 111 LERLKKIRYGL 121 (126)
Q Consensus 111 I~rl~~I~sy~ 121 (126)
+---+.++|-+
T Consensus 200 lGTArSMGi~V 210 (224)
T 3bbo_K 200 AGTAANMGIDI 210 (224)
T ss_dssp HHHHTTTTEEE
T ss_pred HHHHHhCeeEE
Confidence 77777777654
No 147
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=38.23 E-value=10 Score=29.59 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=28.1
Q ss_pred ehhhhcccccchHHHHHHHhCCCCCCcCCC-----------CCHHHHHHHHHHHh
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGE-----------LSAAELDQLMVVVA 72 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~-----------Ls~~qi~~L~~~i~ 72 (126)
.|..+.|||+..+++ |.+.|+..-..+.+ +++.+..++.+.++
T Consensus 158 pL~Qlp~i~~~~~~~-l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~ 211 (328)
T 3im1_A 158 PLRQIPHFNNKILEK-CKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVN 211 (328)
T ss_dssp GGGGSTTCCHHHHHH-HHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHHHH-HHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHH
Confidence 478999999999987 56778754333333 34555555555555
No 148
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=38.16 E-value=9.8 Score=32.20 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=23.1
Q ss_pred eehhhhcccccchHHHHHHHhCCCCCCcC
Q 033139 28 FALTSIKGIGRRLANIVCKKADVDMNKRA 56 (126)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~ 56 (126)
.-++.+.|||+.++.++.+.+||++-..+
T Consensus 307 lPV~~l~GIG~~t~~~L~~llGI~~~~ti 335 (520)
T 3mfi_A 307 FEITSFWTLGGVLGKELIDVLDLPHENSI 335 (520)
T ss_dssp CCGGGSTTCSSHHHHHHHHHTTCCSSSHH
T ss_pred CcHHHhcCCCHHHHHHHHHhcCCCcccch
Confidence 35678999999999999888899544444
No 149
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=38.09 E-value=16 Score=22.37 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCCccceeehhhHHHHHHHHHHHHHhcccc
Q 033139 56 AGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRYG 120 (126)
Q Consensus 56 ~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg~~~h~i~~dL~~~~~~dI~rl~~I~sy 120 (126)
+.++|.+|+..--..+.. .+ +|=|.--.||. +-..--.+.++-||.|++.+-.-
T Consensus 6 lr~~s~~EL~~~l~elk~--El------f~LR~q~atgq---l~n~~~ir~vRr~IARi~Tvl~e 59 (63)
T 3r8s_Y 6 LREKSVEELNTELLNLLR--EQ------FNLRMQAASGQ---LQQSHLLKQVRRDVARVKTLLNE 59 (63)
T ss_dssp TTSCHHHHHHHHHHHHTH--HH------HHHHHHHHTTC---CSCGGGTHHHHHHHHHHHHTTTS
T ss_pred HHhCCHHHHHHHHHHHHH--HH------HHHHHHHHhCC---CcCcHHHHHHHHHHHHHHHHHHH
Confidence 567788888765555543 22 45555555663 34455568999999999987654
No 150
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=37.88 E-value=16 Score=24.89 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=12.0
Q ss_pred ehhhhcccccchHHHHHHHh
Q 033139 29 ALTSIKGIGRRLANIVCKKA 48 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~ 48 (126)
-|..+.|||..+|.+|++.+
T Consensus 59 eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 59 ELINIKGISEAKADKILAEA 78 (114)
T ss_dssp HHHTTTTCSTTHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHH
Confidence 35556666666666666554
No 151
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=37.79 E-value=16 Score=28.80 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=25.8
Q ss_pred hhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033139 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (126)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~ 65 (126)
++.+.|||+.++.++ +.+||..-.-+..++.+++.
T Consensus 181 v~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~ 215 (354)
T 3bq0_A 181 IDEIPGIGSVLARRL-NELGIQKLRDILSKNYNELE 215 (354)
T ss_dssp STTSTTCCHHHHHHH-TTTTCCBGGGGGGSCHHHHH
T ss_pred cccccCcCHHHHHHH-HHcCCccHHHHhcCCHHHHH
Confidence 688899999988874 88999875555555555554
No 152
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=37.60 E-value=12 Score=23.27 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..+|.+|+..|..+++.
T Consensus 23 t~ft~~Q~~~Le~~F~~ 39 (81)
T 1fjl_A 23 TTFSASQLDELERAFER 39 (81)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34677888888777764
No 153
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=37.39 E-value=11 Score=30.38 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=40.3
Q ss_pred cccchhhccccCCCCeehheehhhhcccccchHHHHHH-HhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 9 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCK-KADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 9 ~~~mvrI~g~~l~~~K~v~~aLt~IyGIG~~~A~~Ic~-~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
|.++++.+ .....|++.-+|..+.+-......+.+. .+|+ ++|+.+||-+|..+|.+++.+
T Consensus 271 ~~~vvr~~--F~qRRKtL~n~L~~l~~~~~~~l~~~l~~~~~i--~~R~e~Ls~e~f~~L~~~~~~ 332 (353)
T 1i4w_A 271 WDYVTRHL--MILKRTPLNTVMDSLGHGGQQYFNSRITDKDLL--KKCPIDLTNDEFIYLTKLFME 332 (353)
T ss_dssp HHHHHHHH--HTTTTSCTTTGGGGSSTTHHHHHTTTCCCCTTT--SSCGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHHH--HhhchHHHHHHHHhhccccHHHHHHHhhhhcCc--ccChhhCCHHHHHHHHHHHHh
Confidence 55555542 3356789998987654211111122233 6677 599999999999999999975
No 154
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=37.38 E-value=17 Score=23.50 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=14.0
Q ss_pred CCCCCHHHHHHHHHHHhC
Q 033139 56 AGELSAAELDQLMVVVAN 73 (126)
Q Consensus 56 ~~~Ls~~qi~~L~~~i~~ 73 (126)
=..+|.+|+..|+..++.
T Consensus 38 Rt~ft~~Ql~~Le~~F~~ 55 (97)
T 1b72_A 38 RTNFTTRQLTELEKEFHF 55 (97)
T ss_dssp CCCCCHHHHHHHHHHHTT
T ss_pred CcCcCHHHHHHHHHHHhc
Confidence 345788899988888875
No 155
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=37.30 E-value=12 Score=24.13 Aligned_cols=17 Identities=6% Similarity=0.091 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..+|.+|+..|...++.
T Consensus 22 t~ft~~Ql~~Le~~F~~ 38 (93)
T 3a01_A 22 TSFTRIQVAELEKRFHK 38 (93)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHc
Confidence 34688888888777764
No 156
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=37.03 E-value=14 Score=28.67 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=20.8
Q ss_pred hheehh-hhcccccchHHHH-HHHhCCC
Q 033139 26 IMFALT-SIKGIGRRLANIV-CKKADVD 51 (126)
Q Consensus 26 v~~aLt-~IyGIG~~~A~~I-c~~~gI~ 51 (126)
+.-+|. .+.|+|+..|.++ |..+|.+
T Consensus 190 l~~~l~~~~~G~s~~la~El~~~ra~~~ 217 (288)
T 3doa_A 190 IAKQLLNQFEGFSPLITNEIVSRRQFMT 217 (288)
T ss_dssp HHHHHHHHBTTCCHHHHHHHHTTSSSCS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHcCCc
Confidence 555664 5559999999999 9999964
No 157
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=36.76 E-value=15 Score=28.95 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=26.3
Q ss_pred ehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~ 65 (126)
-+..+.|||+.++.++ +.+||..-.-+..++.+++.
T Consensus 179 pv~~l~GiG~~~~~~L-~~~GI~Ti~dL~~~~~~~L~ 214 (356)
T 4dez_A 179 PPDALWGVGPKTTKKL-AAMGITTVADLAVTDPSVLT 214 (356)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCSHHHHHTSCHHHHH
T ss_pred cHHHHcCCchhHHHHH-HHcCCCeecccccCCHHHHH
Confidence 3578999999999875 78999864444455665554
No 158
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=36.68 E-value=23 Score=26.66 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=31.6
Q ss_pred hHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCChhhh
Q 033139 40 LANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFL 84 (126)
Q Consensus 40 ~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~ 84 (126)
+...+++.+|++ ....+||+++++.+.+..++ +|.-++|.+
T Consensus 214 l~~~~~~~~~~~--~~~~~lt~~e~~~~~~l~~~--ky~~~~W~~ 254 (262)
T 2c8m_A 214 LIRGFSETLHID--FREDTITEKEESLARELFDK--KYSTEEWNM 254 (262)
T ss_dssp HHHHHHHHHTCE--EEECCCCHHHHHHHHHHHHH--TTTSHHHHH
T ss_pred HHHHHHHHhCCC--ceecCCCHHHHHHHHHHHHh--hcCCccccC
Confidence 445566666654 56689999999999999885 588899975
No 159
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=36.26 E-value=23 Score=21.17 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
+.||++|+..|..+|.+
T Consensus 60 ~~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 60 GRADREDLVKAIEYMLS 76 (78)
T ss_dssp TTBCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 47999999999999975
No 160
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=36.15 E-value=26 Score=21.05 Aligned_cols=17 Identities=0% Similarity=0.145 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..||++|+..|..+|.+
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 48999999999999975
No 161
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=35.72 E-value=7.7 Score=33.86 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=0.0
Q ss_pred hhcccccchHHHHHHHhC
Q 033139 32 SIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 32 ~IyGIG~~~A~~Ic~~~g 49 (126)
.|.|||+.+|+.+++..|
T Consensus 533 GIp~VG~~~ak~La~~Fg 550 (615)
T 3sgi_A 533 SIRHVGPTAARALATEFG 550 (615)
T ss_dssp ------------------
T ss_pred CCCCCCHHHHHHHHHHcC
Confidence 589999999999998876
No 162
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=35.72 E-value=12 Score=22.79 Aligned_cols=17 Identities=12% Similarity=0.261 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
+.||++|+..|..+|.+
T Consensus 68 ~~ls~~ei~~l~~yl~~ 84 (91)
T 1ls9_A 68 DRLDEDDIEAVSNYVYD 84 (91)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHH
Confidence 47999999999999975
No 163
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=35.47 E-value=27 Score=20.62 Aligned_cols=17 Identities=12% Similarity=0.347 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..||++|+..|..+|.+
T Consensus 61 ~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLT 77 (79)
T ss_dssp TTSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 48999999999999974
No 164
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=35.26 E-value=5.8 Score=32.04 Aligned_cols=31 Identities=6% Similarity=0.149 Sum_probs=22.9
Q ss_pred ehhhhcccccchHHHHHHHhCCCCCCcCCCC
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGEL 59 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~L 59 (126)
.|+.++|||+++|.+|-+.+.=..-.++.+|
T Consensus 62 ~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L 92 (360)
T 2ihm_A 62 QLHGLPYFGEHSTRVIQELLEHGTCEEVKQV 92 (360)
T ss_dssp GGTTCTTCCHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHcCChHHHHHH
Confidence 4899999999999999988763333333333
No 165
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=35.17 E-value=27 Score=21.09 Aligned_cols=14 Identities=7% Similarity=0.041 Sum_probs=7.9
Q ss_pred CCCHHHHHHHHHHH
Q 033139 58 ELSAAELDQLMVVV 71 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i 71 (126)
.+|.+|+..|..++
T Consensus 7 ~ft~~q~~~Le~~f 20 (73)
T 1puf_B 7 NFNKQATEILNEYF 20 (73)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 34555555555555
No 166
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=34.56 E-value=36 Score=25.94 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 41 ANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 41 A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
..++++.+|+++ .|+.+||-+|..+|.+++++
T Consensus 260 ~~~~l~~~~~~~-~R~e~l~~~~f~~l~~~~~~ 291 (299)
T 2h1r_A 260 CLDVLEHLDMCE-KRSINLDENDFLKLLLEFNK 291 (299)
T ss_dssp HHHHHHHTTCTT-CBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC-CChhhCCHHHHHHHHHHHHh
Confidence 466788999987 79999999999999999875
No 167
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=34.18 E-value=29 Score=21.26 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.||++|+..|..+|.+
T Consensus 67 ~Lsd~ei~~v~~yi~~ 82 (83)
T 1cc5_A 67 DCSDDELKAAIGKMSG 82 (83)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6999999999999864
No 168
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=33.95 E-value=22 Score=25.94 Aligned_cols=29 Identities=0% Similarity=-0.058 Sum_probs=26.0
Q ss_pred HHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033139 44 VCKKADVDMNKRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 44 Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~ 72 (126)
+++.+|+++..++.+|+.+|..+|-+++.
T Consensus 211 ~~~~~~~~~~~r~~~l~~~~f~~l~~~~~ 239 (245)
T 1yub_A 211 FHQAMKHAKVNNLSTITYEQVLSIFNSYL 239 (245)
T ss_dssp HHHHHHHTTCSCTTSCCSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCChhhCCHHHHHHHHHHHH
Confidence 46889999999999999999999998775
No 169
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=33.90 E-value=16 Score=33.82 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=38.7
Q ss_pred hhhccccCCCCe---------ehheehhhhcccccchHHHHHHHhCCCCCCcC------CCCCHHHHHHHHHH
Q 033139 13 LRVLNTNVDGKQ---------KIMFALTSIKGIGRRLANIVCKKADVDMNKRA------GELSAAELDQLMVV 70 (126)
Q Consensus 13 vrI~g~~l~~~K---------~v~~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~------~~Ls~~qi~~L~~~ 70 (126)
+.++..||+.+. .|.++|..|+|+|...|..|.+.=.=.|-..+ ..++...++.|.++
T Consensus 943 i~vlppDIn~S~~~~f~v~~~~Ir~gL~aIkGlG~~~a~~Iv~aR~~gpF~s~~Df~~R~~v~k~~lE~Li~a 1015 (1041)
T 3f2b_A 943 FSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRAREEGEFLSKEDLQQRGKLSKTLLEYLESR 1015 (1041)
T ss_dssp CEECCCCTTTCCSSCCEEETTEEECCGGGSTTCCHHHHHHHHHHHHTSCCCSHHHHHHHHTCCHHHHHHHHHT
T ss_pred CeeCcceEEecCCcceEEECCEEEEchHhhCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHC
Confidence 445555555443 69999999999999999999875431222211 13677777777664
No 170
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=33.50 E-value=35 Score=27.06 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=27.8
Q ss_pred eehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033139 28 FALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (126)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~ 65 (126)
.-+..+.|||+.++.++ +.+||..-.-+..++.+.+.
T Consensus 179 lpv~~l~GiG~~~~~~L-~~~GI~Ti~dL~~~~~~~L~ 215 (362)
T 4f4y_A 179 LDIDEIPGIGSVLARRL-NELGIQKLRDILSKNYNELE 215 (362)
T ss_dssp CBSTTSTTCCSTTHHHH-HHTTCCBGGGGTTSCHHHHH
T ss_pred CChhhccCCCHHHHHHH-HHcCCChHHHHhcCCHHHHH
Confidence 34578899999999885 58999876666666666654
No 171
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.78 E-value=27 Score=21.08 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=8.7
Q ss_pred CCCHHHHHHHHHHHh
Q 033139 58 ELSAAELDQLMVVVA 72 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~ 72 (126)
.+|.+|+..|+..+.
T Consensus 12 ~ft~~Ql~~Le~~F~ 26 (74)
T 2ly9_A 12 KKTKEQLAELKVSYL 26 (74)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 455666666665555
No 172
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.64 E-value=26 Score=22.24 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
+.+|.+|+..|.+++..
T Consensus 8 ~kfT~~Ql~~Le~~F~~ 24 (76)
T 2ecc_A 8 KRKTKEQLAILKSFFLQ 24 (76)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 45788888888888874
No 173
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=32.21 E-value=18 Score=28.79 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=19.0
Q ss_pred ehhhhcccccchHHHHHHHhC
Q 033139 29 ALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~g 49 (126)
.|+.++|||+++|.+|-+.+.
T Consensus 58 ~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 58 EAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH
Confidence 489999999999999998875
No 174
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=31.87 E-value=14 Score=22.22 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
+.||++|+..|..+|.+
T Consensus 70 ~~ls~~ei~~l~~yl~~ 86 (93)
T 3dr0_A 70 GRLSDADIANVAAYIAD 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999999974
No 175
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=31.81 E-value=38 Score=26.85 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=34.0
Q ss_pred chHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccc
Q 033139 39 RLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDY 90 (126)
Q Consensus 39 ~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~ 90 (126)
.....+++.+|.. .. ..||++++..+.+..++ +|.-+.|.+.+.-++
T Consensus 212 ~l~~~f~~~~~~~--~~-~~lt~~e~~~i~~l~~~--ky~s~eW~~g~~P~f 258 (341)
T 1vqz_A 212 LLLEYMKKEYPEM--TE-YVFSEEELAEINRIKDT--KFGTWDWNYGKSPEF 258 (341)
T ss_dssp HHHHHHHHHCTTC--EE-CCCCHHHHHHHHHHHHH--TTTCHHHHTCCCCCC
T ss_pred HHHHHHHHhcCCC--CC-CCCCHHHHHHHHHHHHH--hcCCcccccCCCCCc
Confidence 3455667777765 12 78999999999998874 588899987554443
No 176
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=31.67 E-value=12 Score=23.40 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHhCCCCccCChhhhhccc
Q 033139 59 LSAAELDQLMVVVANPRQFKIPDWFLNRQK 88 (126)
Q Consensus 59 Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~ 88 (126)
+|.++.++|...+.=+ .-.|-.||-|||.
T Consensus 29 Ps~~er~eLA~~tgLt-~~qVkvWFqNRR~ 57 (66)
T 3nau_A 29 PDDAEVYRLIEVTGLA-RSEIKKWFSDHRY 57 (66)
T ss_dssp CCHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcC-HHHhhHhcccchh
Confidence 4455555555554311 2235678888873
No 177
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=31.59 E-value=15 Score=29.97 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=25.4
Q ss_pred hhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033139 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (126)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~ 65 (126)
++.+.|||+.++.++ +.+||..-.-+..++.+++.
T Consensus 236 v~~l~GIG~~t~~~L-~~lGI~TigdLa~~~~~~L~ 270 (420)
T 3osn_A 236 IKEIPGIGYKTAKCL-EALGINSVRDLQTFSPKILE 270 (420)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCSHHHHHHSCHHHHH
T ss_pred HHHccCCCHHHHHHH-HHhCCCcHHHHhhCCHHHHH
Confidence 778999999999887 77999753334444555554
No 178
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=31.59 E-value=19 Score=26.30 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.5
Q ss_pred ehhhhcccccchHHHHHHHhC
Q 033139 29 ALTSIKGIGRRLANIVCKKAD 49 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~g 49 (126)
.|..+.|||+.+|..|.+.+.
T Consensus 195 ~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 195 EISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHHHSTTCCHHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHHh
Confidence 478899999999999987653
No 179
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=31.58 E-value=24 Score=23.38 Aligned_cols=24 Identities=4% Similarity=0.141 Sum_probs=19.7
Q ss_pred ehhhhcccccchHHHHHHHhCCCC
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDM 52 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p 52 (126)
.|..--|+.+++..++|+++|++-
T Consensus 44 elA~~~~vS~aTv~Rf~kklG~~g 67 (111)
T 2o3f_A 44 EISALANSSDAAVIRLCXSLGLKG 67 (111)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTCSS
T ss_pred HHHHHHCCCHHHHHHHHHHcCCCC
Confidence 355667899999999999999883
No 180
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=31.13 E-value=36 Score=19.70 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=17.0
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 033139 54 KRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 54 ~k~~~Ls~~qi~~L~~~i~~ 73 (126)
+....||++|+..|..+|.+
T Consensus 50 Mp~~~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 50 MPGGIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp BCSCSSCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 44478999999999999874
No 181
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=31.11 E-value=9.4 Score=31.09 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=23.8
Q ss_pred ehhhhcccccchHHHHHHHhCCCCCCcCCCCCH
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 61 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~ 61 (126)
.|+.+.|||.++|.+|-+.+.=..-.++.+|..
T Consensus 81 ~l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~ 113 (381)
T 1jms_A 81 DTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLN 113 (381)
T ss_dssp GGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhc
Confidence 489999999999999998876443333334433
No 182
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=30.65 E-value=13 Score=32.76 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=29.4
Q ss_pred hhcccccchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033139 32 SIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (126)
Q Consensus 32 ~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~ 65 (126)
.|.|+|++++.++.+..+|..-.-+-.|+.+++.
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~ 478 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLL 478 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHH
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHh
Confidence 6999999999999999998887788888877654
No 183
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=30.32 E-value=23 Score=19.95 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccCCh
Q 033139 56 AGELSAAELDQLMVVVANPRQFKIPD 81 (126)
Q Consensus 56 ~~~Ls~~qi~~L~~~i~~~~~~~iP~ 81 (126)
+.+||=-|+..|.+.++. .+++|+
T Consensus 10 i~~lTvlE~~eLvk~lee--kfGVsa 33 (40)
T 1dd4_C 10 IEKLTVSELAELVKKLED--KFGVTA 33 (40)
T ss_dssp HTTSCHHHHHHHHHHHHH--HTCCCS
T ss_pred HHhCcHHHHHHHHHHHHH--HHCCCc
Confidence 578899999999999998 787754
No 184
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=30.11 E-value=28 Score=20.51 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..||++|+..|..+|.+
T Consensus 69 ~~ls~~ei~~l~~yl~s 85 (87)
T 2zxy_A 69 KGLSDAELKALADFILS 85 (87)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 47999999999999874
No 185
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=30.08 E-value=66 Score=20.85 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=32.5
Q ss_pred ccchHHHHHHHhC--CCCCCcCCCCCHHHHHHHHHHHhCCCCccCChh
Q 033139 37 GRRLANIVCKKAD--VDMNKRAGELSAAELDQLMVVVANPRQFKIPDW 82 (126)
Q Consensus 37 G~~~A~~Ic~~~g--I~p~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w 82 (126)
+.+++.++.+..- ++|+.+-+..|++|-..|.+++.. |+ |.|
T Consensus 32 ~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~---~G-~~W 75 (107)
T 2k9n_A 32 ITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAE---YG-PKW 75 (107)
T ss_dssp TTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHH---TC-SCH
T ss_pred CCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHH---hC-cCH
Confidence 3456666665543 899999999999999999999985 65 467
No 186
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=29.87 E-value=18 Score=23.07 Aligned_cols=37 Identities=8% Similarity=-0.007 Sum_probs=27.4
Q ss_pred ehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHH
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMV 69 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~ 69 (126)
.|..++--|+.+|..|++.+||++.+-+.. ++..|.+
T Consensus 16 IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~----hL~~Le~ 52 (79)
T 1xmk_A 16 ICDYLFNVSDSSALNLAKNIGLTKARDINA----VLIDMER 52 (79)
T ss_dssp HHHHHHHTCCEEHHHHHHHHCGGGHHHHHH----HHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHcCCCcHHHHHH----HHHHHHH
Confidence 356677789999999999999997534433 6666665
No 187
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=29.70 E-value=28 Score=20.62 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
+.||++|+..|..+|.+
T Consensus 62 ~~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 62 KRYSDEEMKAMADYMSK 78 (79)
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 47999999999999863
No 188
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=29.45 E-value=14 Score=22.68 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHhCCCCccCChhhhhccc
Q 033139 59 LSAAELDQLMVVVANPRQFKIPDWFLNRQK 88 (126)
Q Consensus 59 Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~ 88 (126)
.+.++...|...+.=+ .-.|-.||-|||.
T Consensus 42 p~~~~r~~La~~l~l~-~~qV~~WFqNrR~ 70 (80)
T 2da3_A 42 PTRKMLDHIAHEVGLK-KRVVQVWFQNTRA 70 (80)
T ss_dssp CCHHHHHHHHHHHTSC-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCcC-HHHhHHHhHHHHH
Confidence 3444444454444311 1224568888773
No 189
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=29.15 E-value=39 Score=19.85 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=16.5
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 033139 54 KRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 54 ~k~~~Ls~~qi~~L~~~i~~ 73 (126)
+....||++|+..|..+|.+
T Consensus 61 Mp~~~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 61 MPPNAVSDDEAQTLAKWVLS 80 (82)
T ss_dssp BCCCCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 44448999999999999974
No 190
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=28.18 E-value=38 Score=21.19 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=23.4
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHhCCCCccCChh
Q 033139 49 DVDMNKRAGELSAAELDQLMVVVANPRQFKIPDW 82 (126)
Q Consensus 49 gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w 82 (126)
-+||+.+-+..|++|-+.|.++++. ++ +.|
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~---~G-~kW 45 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIK---HG-NDW 45 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHH---HS-SCH
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHH---HC-CCH
Confidence 3689999999999999999999985 65 456
No 191
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=28.14 E-value=14 Score=23.21 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=27.2
Q ss_pred hCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCChhhhh
Q 033139 48 ADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLN 85 (126)
Q Consensus 48 ~gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~n 85 (126)
.|||+.++=..||+++..++=..=.. .-+.+|.|=-|
T Consensus 22 ~gVD~~~lE~yLsdedF~~vFgms~~-eF~~LP~WKq~ 58 (67)
T 1yu8_X 22 RGVDPSAKENHLSDEDFKAVFGMTRS-AFANLPLWKQQ 58 (67)
T ss_dssp TTCCTTCGGGGSCHHHHHHHHSSCHH-HHHTSCHHHHH
T ss_pred cccChHHHHhcCCHHHHHHHHCcCHH-HHHHChHHHHH
Confidence 58999999999999999988543211 13568999543
No 192
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=27.83 E-value=18 Score=21.27 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHhCCCCccCChhhhhccc
Q 033139 58 ELSAAELDQLMVVVANPRQFKIPDWFLNRQK 88 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~ 88 (126)
..+.++...|...+.=+ .-.|-.||-|||.
T Consensus 30 yp~~~~r~~La~~~~L~-~~qV~~WFqNrR~ 59 (64)
T 1du6_A 30 YPSEEAKEELAKKCGIT-VSQVSNWFGNKRI 59 (64)
T ss_dssp CCCHHHHHHHHHHHTSC-HHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 34555555555555421 1235678888875
No 193
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=27.56 E-value=42 Score=20.12 Aligned_cols=10 Identities=30% Similarity=1.192 Sum_probs=6.6
Q ss_pred CChhhhhccc
Q 033139 79 IPDWFLNRQK 88 (126)
Q Consensus 79 iP~w~~nr~~ 88 (126)
|-.||-|||.
T Consensus 45 V~~WFqNrR~ 54 (67)
T 3k2a_A 45 VNNWFINARR 54 (67)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhHHHHH
Confidence 4467777765
No 194
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=27.56 E-value=41 Score=19.74 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
+.||++|+..|..+|.+
T Consensus 64 ~~ls~~ei~~l~~yl~~ 80 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLD 80 (86)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 57999999999999874
No 195
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=27.41 E-value=30 Score=22.91 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=18.1
Q ss_pred hhhhcccccchHHHHHHHhCCC
Q 033139 30 LTSIKGIGRRLANIVCKKADVD 51 (126)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~~gI~ 51 (126)
|..--|+.+++..++|+++|++
T Consensus 41 lA~~~~vS~aTv~Rf~kkLGf~ 62 (107)
T 3iwf_A 41 IANQLETSSTSIIRLSKKVTPG 62 (107)
T ss_dssp HHHHHTSCHHHHHHHHHHHSTT
T ss_pred HHHHHCCCHHHHHHHHHHhCCC
Confidence 4566788888999999999987
No 196
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=27.22 E-value=25 Score=30.96 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=30.6
Q ss_pred hhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 033139 31 TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQ 66 (126)
Q Consensus 31 t~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~ 66 (126)
-.|.|+|++++.++.+..+|..-.-+-.|+.+++..
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~ 484 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTG 484 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHT
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhc
Confidence 589999999999999999988777788888777544
No 197
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=26.86 E-value=42 Score=19.80 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=16.4
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 033139 54 KRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 54 ~k~~~Ls~~qi~~L~~~i~~ 73 (126)
+....||++|+..|..+|.+
T Consensus 59 Mp~~~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 59 MPPQNVTDAEAKQLAQWILS 78 (80)
T ss_dssp BCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 44448999999999999864
No 198
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=26.64 E-value=18 Score=20.60 Aligned_cols=29 Identities=41% Similarity=0.548 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHHhCCCCccCChhhhhccc
Q 033139 59 LSAAELDQLMVVVANPRQFKIPDWFLNRQK 88 (126)
Q Consensus 59 Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~ 88 (126)
++..+...|...+.=+ .-.|-.||-|||.
T Consensus 27 p~~~~r~~La~~l~l~-~~qV~~WFqNrR~ 55 (58)
T 3rkq_A 27 LSAPERDQLASVLKLT-STQVKIWFQNRRY 55 (58)
T ss_dssp CCHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcC-HHHHHHhhHHhhc
Confidence 4444555555544321 1224557777764
No 199
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=26.25 E-value=51 Score=27.54 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=28.1
Q ss_pred chHHHHHHHhCCCCCCc-C---CCCCHHHHHHHHHHHhC
Q 033139 39 RLANIVCKKADVDMNKR-A---GELSAAELDQLMVVVAN 73 (126)
Q Consensus 39 ~~A~~Ic~~~gI~p~~k-~---~~Ls~~qi~~L~~~i~~ 73 (126)
..+++.++++|++|+.| + +.|+++.+.+|.+.++.
T Consensus 303 ~k~r~~ld~~G~~~~~K~Iv~SdgLde~~i~~L~~~~~~ 341 (446)
T 4hl7_A 303 DKMIAHYQQLGIDPTTKLFIFSDGLDFDQALELCEYFAG 341 (446)
T ss_dssp HHHHHHHHHTTCCGGGSEEEECSSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCcEEEEcCCCCHHHHHHHHHHhcC
Confidence 35777889999998776 2 77999999999876654
No 200
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=26.12 E-value=33 Score=22.53 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=14.1
Q ss_pred CCCCCHHHHHHHHHHHh
Q 033139 56 AGELSAAELDQLMVVVA 72 (126)
Q Consensus 56 ~~~Ls~~qi~~L~~~i~ 72 (126)
+.+||++|+..|++++.
T Consensus 1 Ms~lt~eqi~el~~~F~ 17 (148)
T 2lmt_A 1 MSELTEEQIAEFKDAFV 17 (148)
T ss_dssp CCSCCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 45799999999998875
No 201
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=26.09 E-value=45 Score=19.71 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.||++|+..|..+|.+
T Consensus 66 ~ls~~ei~~l~~yl~~ 81 (88)
T 3dmi_A 66 RLSDEEIANVAAYVLA 81 (88)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999999999974
No 202
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=25.99 E-value=22 Score=25.05 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=14.9
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 033139 54 KRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 54 ~k~~~Ls~~qi~~L~~~i~~ 73 (126)
.+=..+|.+|+..|..+++.
T Consensus 99 r~Rt~ft~~q~~~Le~~F~~ 118 (164)
T 2d5v_A 99 KPRLVFTDVQRRTLHAIFKE 118 (164)
T ss_dssp -CCCCCCHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHhc
Confidence 33445899999999888875
No 203
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=25.80 E-value=21 Score=21.53 Aligned_cols=17 Identities=6% Similarity=0.120 Sum_probs=15.3
Q ss_pred ccccchHHHHHHHhCCC
Q 033139 35 GIGRRLANIVCKKADVD 51 (126)
Q Consensus 35 GIG~~~A~~Ic~~~gI~ 51 (126)
=|+..+.++|++.+|+.
T Consensus 47 ei~~g~lk~Ilkqagl~ 63 (70)
T 1whz_A 47 ELPKGTFKRILRDAGLT 63 (70)
T ss_dssp SCCHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHcCCC
Confidence 38999999999999975
No 204
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=25.79 E-value=68 Score=20.74 Aligned_cols=19 Identities=5% Similarity=-0.004 Sum_probs=13.4
Q ss_pred ccccchHHHHHHHhCCCCC
Q 033139 35 GIGRRLANIVCKKADVDMN 53 (126)
Q Consensus 35 GIG~~~A~~Ic~~~gI~p~ 53 (126)
.+...+..+||+.+|++++
T Consensus 51 ~p~~~~l~~ia~~l~v~~~ 69 (126)
T 3ivp_A 51 HPSLQVLYDLVSLLNVSVD 69 (126)
T ss_dssp CCCHHHHHHHHHHHTCCSH
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 3555677788888887765
No 205
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=25.77 E-value=17 Score=30.84 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=32.6
Q ss_pred ehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
.|+.+.|||.++|.+|..-+..-.+. -.-+.-+|...+.+.|.+
T Consensus 132 ~L~~~~GiG~Ktaq~I~~~l~~~~~~-~~r~~~~e~~~~~~~i~~ 175 (578)
T 2w9m_A 132 ELAGLKGFGAKSAATILENVVFLFEA-RQRQSLRAGLAVAEELAG 175 (578)
T ss_dssp TTTTSTTCCHHHHHHHHHHHHHHHHH-CSSEEHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHhh-cCCeeHHHHHHHHHHHHH
Confidence 57889999999999996665554322 355677888888888764
No 206
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=25.74 E-value=16 Score=22.77 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..||++|+..|..+|.+
T Consensus 77 ~~ls~~ei~~l~~yl~~ 93 (105)
T 2ce0_A 77 PRLQDEEIKLLAEFVKF 93 (105)
T ss_dssp CCBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 58999999999999985
No 207
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.68 E-value=19 Score=21.65 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|+.+++.
T Consensus 13 ~ft~~q~~~Le~~F~~ 28 (70)
T 2dmu_A 13 IFTDEQLEALENLFQE 28 (70)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4677777777776664
No 208
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=25.65 E-value=44 Score=22.68 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=14.1
Q ss_pred CCCCHHHHHHHHHHHh
Q 033139 57 GELSAAELDQLMVVVA 72 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~ 72 (126)
.+||++|+..|++++.
T Consensus 1 sqLt~eqi~elre~F~ 16 (159)
T 3i5g_C 1 SQLTKDEIEEVREVFD 16 (159)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4799999999999876
No 209
>4a18_B RPL39, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_B 4a1b_B 4a1d_B
Probab=25.59 E-value=38 Score=20.24 Aligned_cols=38 Identities=8% Similarity=0.193 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCCccCChhh--hhccccccCCccceeehhhH
Q 033139 64 LDQLMVVVANPRQFKIPDWF--LNRQKDYKDGRYSQVVSNAL 103 (126)
Q Consensus 64 i~~L~~~i~~~~~~~iP~w~--~nr~~d~~tg~~~h~i~~dL 103 (126)
=..|.++..+ +-.+|.|. ...++-.+..+..|.=-++|
T Consensus 10 K~rLaK~~kq--Nr~iP~Wv~~KT~~kir~n~KRRhWRRtkL 49 (52)
T 4a18_B 10 KKRFGRKIKQ--NRPLPNWYRYKSDTNIRYNSKRRNWRRTKL 49 (52)
T ss_dssp HHHHHHHHHT--TSCCCTTGGGCSSCCCSSCTTCCCTTTSCC
T ss_pred HHHHHHHHhc--cCCCCceEEEeCCCccccCCcccccccccc
Confidence 3468888887 78999996 45666666667777655444
No 210
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=25.57 E-value=67 Score=19.96 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=11.2
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 033139 55 RAGELSAAELDQLMVVVA 72 (126)
Q Consensus 55 k~~~Ls~~qi~~L~~~i~ 72 (126)
+=..++.+|+..|.+++.
T Consensus 10 ~R~~~s~~q~~~L~~~f~ 27 (83)
T 2dmn_A 10 RKGNLPAESVKILRDWMY 27 (83)
T ss_dssp CCSSCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHH
Confidence 334467777777776654
No 211
>3u5e_l L46, YL40, 60S ribosomal protein L39; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_O 2ww9_O 3izc_o 3izs_o 2wwb_O 3o5h_e 3o58_e 3u5i_l 4b6a_l 3jyw_1
Probab=25.36 E-value=44 Score=19.86 Aligned_cols=38 Identities=5% Similarity=0.149 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCCccCChhh--hhccccccCCccceeehhhH
Q 033139 64 LDQLMVVVANPRQFKIPDWF--LNRQKDYKDGRYSQVVSNAL 103 (126)
Q Consensus 64 i~~L~~~i~~~~~~~iP~w~--~nr~~d~~tg~~~h~i~~dL 103 (126)
=..|.++..+ +-.+|.|. ...++-.+..+..|.=-++|
T Consensus 10 K~rLaK~~kq--Nr~iP~Wv~~KT~~kir~n~KRRhWRRtkL 49 (51)
T 3u5e_l 10 KQKMAKAKKQ--NRPLPQWIRLRTNNTIRYNAKRRNWRRTKM 49 (51)
T ss_dssp HHHHHHHHHT--CSCCCGGGGGSTTCCCCSCTTCCCTTTCCC
T ss_pred HHHHHHHHhc--cCCCCceEEEeCCCccccCCcccccccccc
Confidence 3468888887 78999996 45666666666666544433
No 212
>2yfr_A Levansucrase, inulosucrase; fructosyltransferase, glycoside hydrolase family GH68, trans sugar utilization; 1.75A {Lactobacillus johnsonii} PDB: 2yft_A* 2yfs_A*
Probab=25.33 E-value=32 Score=29.79 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=37.6
Q ss_pred chHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCCccceeehhhHHHHHHHHHH
Q 033139 39 RLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLE 112 (126)
Q Consensus 39 ~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg~~~h~i~~dL~~~~~~dI~ 112 (126)
..+.+|.+.+||| +..||++|+..|.+.- + -+.-.+| .|+.-.|+...-+..++
T Consensus 38 ~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~-----~---------~~~~~~~--~~~t~~~~~~i~~~~~~ 91 (571)
T 2yfr_A 38 GQVKDIVEESGVD----TSKLTNDQINELNKIN-----F---------SKEAKSG--TQLTYNDFKKIAKTLIE 91 (571)
T ss_dssp HHHHHHHHHTTCC----GGGCCHHHHHHHTTCB-----C---------CCCCSSS--EECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC----hhhcCHHHHHhhhhhh-----c---------ccCCCcc--CcccHHHHHHHHhhhhc
Confidence 3678899999998 7899999988876531 1 0122344 68888888766655443
No 213
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=25.02 E-value=18 Score=20.82 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHh
Q 033139 59 LSAAELDQLMVVVA 72 (126)
Q Consensus 59 Ls~~qi~~L~~~i~ 72 (126)
+|.+|+..|...++
T Consensus 7 ft~~Q~~~Le~~F~ 20 (58)
T 1ig7_A 7 FTTAQLLALERKFR 20 (58)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 45555555555554
No 214
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=25.01 E-value=19 Score=20.88 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHh
Q 033139 59 LSAAELDQLMVVVA 72 (126)
Q Consensus 59 Ls~~qi~~L~~~i~ 72 (126)
+|.+|+..|..++.
T Consensus 12 ft~~q~~~Le~~f~ 25 (61)
T 1akh_A 12 ISPQARAFLEEVFR 25 (61)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 45555555555554
No 215
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=24.95 E-value=27 Score=22.27 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=25.5
Q ss_pred hhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHH
Q 033139 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMV 69 (126)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~ 69 (126)
+....-=|+.+|..|.+.+|+...+-|+- .+..+++
T Consensus 16 ~~fL~~~Gp~~AL~IAK~LGlktAK~VNp----~LY~m~~ 51 (72)
T 3eyi_A 16 YRFLKDNGPQRALVIAQALGMRTAKDVNR----DLYRMKS 51 (72)
T ss_dssp HHHHHHHCSEEHHHHHHHTTCCSGGGTHH----HHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHhCcchhhhcCH----HHHHHHH
Confidence 34455669999999999999987554432 4555554
No 216
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.88 E-value=20 Score=21.58 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHHhCCCCccCChhhhhccc
Q 033139 59 LSAAELDQLMVVVANPRQFKIPDWFLNRQK 88 (126)
Q Consensus 59 Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~ 88 (126)
++.++...|...+.=+ .-.|-.||-|||.
T Consensus 28 p~~~~r~~LA~~l~L~-e~qVqvWFqNRRa 56 (64)
T 2e19_A 28 PSAEELSKIADSVNLP-LDVVKKWFEKMQA 56 (64)
T ss_dssp CCHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCcC-hhhcCcchhcccC
Confidence 3444444444444311 1224568888874
No 217
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=24.87 E-value=50 Score=19.80 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
+.||++|+..|..+|.+
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (87)
T 1cno_A 65 TALSDADIANLAAYYAS 81 (87)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 57999999999999974
No 218
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=24.64 E-value=35 Score=20.19 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..||++|+..|..+|.+
T Consensus 63 ~~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 63 VNVSDADAKALADWILT 79 (81)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 48999999999999863
No 219
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=24.62 E-value=20 Score=20.85 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHh
Q 033139 59 LSAAELDQLMVVVA 72 (126)
Q Consensus 59 Ls~~qi~~L~~~i~ 72 (126)
+|.+|+..|..+++
T Consensus 8 ft~~Q~~~Le~~F~ 21 (60)
T 1jgg_A 8 FTRDQLGRLEKEFY 21 (60)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 45555555555554
No 220
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=24.52 E-value=17 Score=21.05 Aligned_cols=10 Identities=40% Similarity=1.016 Sum_probs=6.4
Q ss_pred CChhhhhccc
Q 033139 79 IPDWFLNRQK 88 (126)
Q Consensus 79 iP~w~~nr~~ 88 (126)
|-.||-|||.
T Consensus 45 V~~WFqNrR~ 54 (60)
T 1k61_A 45 IKNWVSNRRR 54 (60)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 4567777763
No 221
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=24.25 E-value=52 Score=19.22 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.||++|+..|..+|.+
T Consensus 64 ~ls~~ei~~l~~yl~~ 79 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLS 79 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999874
No 222
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=24.17 E-value=51 Score=19.53 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.||++|+..|..+|.+
T Consensus 67 ~ls~~ei~~l~~yi~~ 82 (85)
T 3cu4_A 67 MIPPADALKIGEYVVA 82 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999999999864
No 223
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=24.01 E-value=22 Score=22.29 Aligned_cols=16 Identities=6% Similarity=0.393 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|...++.
T Consensus 23 ~ft~~Ql~~Le~~f~~ 38 (80)
T 1wh5_A 23 KFTAEQKERMLALAER 38 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 3677777777777653
No 224
>1ffk_Y Ribosomal protein L39E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: a.137.1.1
Probab=23.98 E-value=37 Score=20.06 Aligned_cols=37 Identities=5% Similarity=0.101 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCCccCChhh--hhccccccCCccceeehhhH
Q 033139 65 DQLMVVVANPRQFKIPDWF--LNRQKDYKDGRYSQVVSNAL 103 (126)
Q Consensus 65 ~~L~~~i~~~~~~~iP~w~--~nr~~d~~tg~~~h~i~~dL 103 (126)
..|.++..+ |-.+|.|. ...++-.+..+..|.=-++|
T Consensus 9 ~rLaK~~kQ--NrpiP~Wv~~KT~~kiryn~KRRhWRRtkL 47 (49)
T 1ffk_Y 9 KRKAKLDNQ--NSRVPAYVMLKTDREVQRNHKRRHWRRNDT 47 (49)
T ss_pred HHHHHHHhc--cCCCCcEEEEecCCceecCCcccccccccc
Confidence 367777877 78999995 46666666667777655544
No 225
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=23.94 E-value=52 Score=19.45 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
+.||++|+..|..+|.+
T Consensus 67 ~~ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 67 GRLSPLQIEDVAAYVVD 83 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 35999999999999874
No 226
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.94 E-value=77 Score=18.42 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=25.3
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHhCCCCccCChh
Q 033139 49 DVDMNKRAGELSAAELDQLMVVVANPRQFKIPDW 82 (126)
Q Consensus 49 gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w 82 (126)
|-+++..-+..|++|=..|.++++. |+...|
T Consensus 1 gss~~~~~~~WT~eED~~L~~~v~~---~G~~~W 31 (60)
T 1x41_A 1 GSSGSSGDPSWTAQEEMALLEAVMD---CGFGNW 31 (60)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHH---TCTTCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH---HCcCcH
Confidence 4467777888999999999999985 766667
No 227
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=23.79 E-value=33 Score=28.98 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=29.8
Q ss_pred hhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033139 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
|+.++|||+++|.+|+..+.--.+. -.-+.-++...+.+.|.+
T Consensus 130 l~~~~GiG~k~a~~i~~~l~~~~~~-~~r~~~~e~~~~~~~i~~ 172 (575)
T 3b0x_A 130 LTRLKGFGPKRAERIREGLALAQAA-GKRRPLGAVLSLARSLLE 172 (575)
T ss_dssp GGGSTTCCHHHHHHHHHHHHHHHHH-TCCEEHHHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHHHHHHHHHHHh-ccceeHHHHHHHHHHHHH
Confidence 6899999999999997655533222 244566777777766654
No 228
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=23.64 E-value=69 Score=19.00 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
..||++|+..|..+|.+
T Consensus 56 ~~ls~~ei~~l~~yl~~ 72 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSS 72 (80)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 47999999999999975
No 229
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=23.63 E-value=78 Score=19.98 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=24.8
Q ss_pred hhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 033139 31 TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQ 66 (126)
Q Consensus 31 t~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~ 66 (126)
.++.||.......|++..|+ .++.+.--+++..
T Consensus 6 ~~~~~ip~~~I~Riar~~Gv---~rIs~da~~~l~~ 38 (84)
T 2hue_C 6 DNIQGITKPAIRRLARRGGV---KRISGLIYEETRG 38 (84)
T ss_dssp GGCCSSCHHHHHHHHHHTTC---CEECTTHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHcCc---hhccHHHHHHHHH
Confidence 47889999999999999997 4566555444443
No 230
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=23.58 E-value=63 Score=24.18 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=22.9
Q ss_pred hhhcccccchHHHHHHHhCCCCCCcCCCCCHHHH
Q 033139 31 TSIKGIGRRLANIVCKKADVDMNKRAGELSAAEL 64 (126)
Q Consensus 31 t~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi 64 (126)
..++-||+.||..+ +++|+.+ .-...-+-+.+
T Consensus 115 ~~i~aVG~~Ta~aL-~~~G~~~-~~p~~~~ae~L 146 (286)
T 1jr2_A 115 KSVYVVGNATASLV-SKIGLDT-EGETCGNAEKL 146 (286)
T ss_dssp SEEEECSHHHHHHH-HHTTCCC-SCCSCSSHHHH
T ss_pred CcEEEECHHHHHHH-HHcCCCc-CCCCccCHHHH
Confidence 46999999999987 7899987 33333344433
No 231
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase; HET: SAH 4MM; 1.75A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A 2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K 2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K 2xtg_K ...
Probab=23.49 E-value=19 Score=25.77 Aligned_cols=36 Identities=8% Similarity=0.164 Sum_probs=6.0
Q ss_pred ccchHHHHHHHhCCCCC------CcCCCCCHHHHHHHHHHHh
Q 033139 37 GRRLANIVCKKADVDMN------KRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 37 G~~~A~~Ic~~~gI~p~------~k~~~Ls~~qi~~L~~~i~ 72 (126)
-+..|.-|.+.+|+.+. .+++.+|-+|+.+|.+.-.
T Consensus 70 ~Ppas~Ll~Ka~g~~~gs~~p~~~~vG~it~~qi~eIA~~K~ 111 (146)
T 3egv_B 70 TPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKM 111 (146)
T ss_dssp CCCHHHHC----------------------------------
T ss_pred CCCHHHHHHHhhCCCCCCCCCCCeeeeeecHHHHHHHHHHHh
Confidence 46778888888998864 3488999999999888754
No 232
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=23.40 E-value=27 Score=27.39 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=27.7
Q ss_pred ehhhhcccccchHHHHHHHhCCCCCCcCCC-----------CCHHHHHHHHHHHh
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGE-----------LSAAELDQLMVVVA 72 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~-----------Ls~~qi~~L~~~i~ 72 (126)
.|..+.|||+..++++ ++.|+..-..+.+ +++.|...+.+.++
T Consensus 162 pL~Qlp~i~~~~~~~l-~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~ 215 (339)
T 2q0z_X 162 YLKQLPHFTSEHIKRC-TDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCN 215 (339)
T ss_dssp GGGGSTTCCHHHHHHH-HHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHT
T ss_pred ceecCCCCCHHHHHHH-HhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4889999999988875 5667654444433 44555555555554
No 233
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=23.32 E-value=43 Score=28.22 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=28.6
Q ss_pred eehhhhcccccchHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 033139 28 FALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQ 66 (126)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~Ls~~qi~~ 66 (126)
.-+..+.|||+.++.++ +.+||..-.-+..++.+++.+
T Consensus 315 LPV~~l~GIG~~t~~kL-~~lGI~TigDLa~~~~~~L~~ 352 (504)
T 3gqc_A 315 QLVTNLPGVGHSMESKL-ASLGIKTCGDLQYMTMAKLQK 352 (504)
T ss_dssp SBGGGSTTCCHHHHHHH-HHTTCCBHHHHTTSCHHHHHH
T ss_pred CChhHhhCcCHHHHHHH-HHcCCCcHHHHHhccHHHHHH
Confidence 34678999999999874 689998755666667666643
No 234
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=23.08 E-value=32 Score=22.61 Aligned_cols=28 Identities=11% Similarity=-0.045 Sum_probs=22.3
Q ss_pred hhcccccchHHHHHHHhCCCCCCcCCCC
Q 033139 32 SIKGIGRRLANIVCKKADVDMNKRAGEL 59 (126)
Q Consensus 32 ~IyGIG~~~A~~Ic~~~gI~p~~k~~~L 59 (126)
.-+|....+...||+.+|+++..=-...
T Consensus 26 ~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 53 (177)
T 3kkc_A 26 QENDYSKITVQDVIGLANVGRSTFYSHY 53 (177)
T ss_dssp TTSCTTTCCHHHHHHHHCCCHHHHTTTC
T ss_pred HhCChhHhhHHHHHHHhCCcHhhHHHHc
Confidence 3468889999999999999976654444
No 235
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=23.03 E-value=29 Score=21.04 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=9.7
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
-+|.+|+..|+.++..
T Consensus 13 ~ft~~Q~~~Le~~F~~ 28 (73)
T 2l7z_A 13 PYTKVQLKELEREYAT 28 (73)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhh
Confidence 3566666666666653
No 236
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=22.64 E-value=1.2e+02 Score=19.11 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=17.7
Q ss_pred CCCcCCCCCHHHHHHHHHHHhC
Q 033139 52 MNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 52 p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
..+....||++|+..|..+|..
T Consensus 98 ~~Mp~~~Ls~~ei~~l~~Yl~~ 119 (124)
T 3cp5_A 98 TMMTDMALSEEQARAILEYLRQ 119 (124)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH
Confidence 3455578999999999999863
No 237
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.58 E-value=26 Score=25.92 Aligned_cols=55 Identities=5% Similarity=0.105 Sum_probs=36.9
Q ss_pred cCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCCccceeehhhHHHHHHHHHHHHHhcccc
Q 033139 55 RAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRYG 120 (126)
Q Consensus 55 k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg~~~h~i~~dL~~~~~~dI~rl~~I~sy 120 (126)
-+.++|++|+..-...+++ .+ +|=|.--.||. +-..--.+.++-||.|++.+-.-
T Consensus 69 ELR~lS~eEL~ekL~eLKk--EL------FnLRfQkATGQ---LeNpsrIR~VRRdIARIkTVLrE 123 (173)
T 3bbo_Z 69 EIRSKTTEQLQEEVVDLKG--EL------FMLRLQKSARN---EFKSSDFRRMKKQVARMLTVKRE 123 (173)
T ss_dssp HHHHSCHHHHHHHHHHHTT--HH------HHHHHHHHHCC---CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH--HH------HHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHHH
Confidence 3466788888766666654 33 55565556665 33444568999999999987543
No 238
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=22.55 E-value=1.2e+02 Score=24.36 Aligned_cols=57 Identities=9% Similarity=-0.051 Sum_probs=39.6
Q ss_pred ccchHHHHHHHhCCCC---CCcCCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCCccc
Q 033139 37 GRRLANIVCKKADVDM---NKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYS 96 (126)
Q Consensus 37 G~~~A~~Ic~~~gI~p---~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg~~~ 96 (126)
++.-.+..++..|+.. ...+..|++++.++|++++++ +++..|.=.|--...+-.|.
T Consensus 295 ~p~~vK~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~---~gl~~~~~~~~~~~~~~~~~ 354 (360)
T 4dpp_A 295 NPIGINTALAQLGVSRPVFRLPYVPLPLSKRLEFVKLVKE---IGREHFVGEKDVQALDDDDF 354 (360)
T ss_dssp TTHHHHHHHHHHTSSCSEEETTCCCCCHHHHHHHHHHHHH---HCGGGSSSSSCCCCCCGGGC
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---cCCcccCCcccceeecccce
Confidence 4456788889999863 256788999999999999985 66666664433333333333
No 239
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=22.45 E-value=15 Score=24.27 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=26.6
Q ss_pred hCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCChhh
Q 033139 48 ADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWF 83 (126)
Q Consensus 48 ~gI~p~~k~~~Ls~~qi~~L~~~i~~~~~~~iP~w~ 83 (126)
.||||.++=..||+++..++=..=.. .-+.+|.|=
T Consensus 37 ~gVD~tklE~YLSdedF~~vFgMsr~-eF~~LP~WK 71 (88)
T 1ujs_A 37 KDVDRTRLERHLSQEEFYQVFGMTIS-EFDRLALWK 71 (88)
T ss_dssp SSCCTTTGGGGSCTTHHHHHHSSCHH-HHTTSCHHH
T ss_pred cccCHHHHHhcCCHHHHHHHHCcCHH-HHHHChHHH
Confidence 48999999999999999988653221 136789995
No 240
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=22.40 E-value=52 Score=30.19 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=26.5
Q ss_pred hHHHHHHHhCCCCCCcCCCCCHHHHHHHHHH
Q 033139 40 LANIVCKKADVDMNKRAGELSAAELDQLMVV 70 (126)
Q Consensus 40 ~A~~Ic~~~gI~p~~k~~~Ls~~qi~~L~~~ 70 (126)
.-..+|+..||+.+++.++|+++|.+.|-.=
T Consensus 338 ~~~~~~~~~~~~~~~p~~~l~~~~~~~~l~g 368 (972)
T 2r6f_A 338 LLEAVCRHYGIPMDVPVKDLPKEQLDKILYG 368 (972)
T ss_dssp HHHHHHHHHCCCSSCBGGGSCHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCchHHCCHHHHHHHccC
Confidence 3467899999999999999999998877653
No 241
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=22.40 E-value=1e+02 Score=20.25 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=23.0
Q ss_pred HHHHHHhCCCCC---CcCCCCCHHHHHHHHHHHh
Q 033139 42 NIVCKKADVDMN---KRAGELSAAELDQLMVVVA 72 (126)
Q Consensus 42 ~~Ic~~~gI~p~---~k~~~Ls~~qi~~L~~~i~ 72 (126)
.......+++++ -.+.+|+++|++.|.++.+
T Consensus 55 T~~f~~~~~~~~~l~~dl~~L~~~e~~~l~~W~~ 88 (102)
T 1j03_A 55 SRALGKMSKNEEDVSPSLEGLTEKEINTLNDWET 88 (102)
T ss_dssp HHHHHHTCCCSSSCCSSCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhhccCcccCCCHHHHHHHHHHHH
Confidence 344466777665 3467899999999998876
No 242
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=22.14 E-value=24 Score=20.71 Aligned_cols=16 Identities=19% Similarity=0.021 Sum_probs=9.7
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.+|.+|+..|...+..
T Consensus 9 ~ft~~Q~~~Le~~F~~ 24 (63)
T 2h1k_A 9 AYTRAQLLELEKEFLF 24 (63)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhc
Confidence 3566666666666653
No 243
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=21.88 E-value=35 Score=22.54 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=19.9
Q ss_pred hhcccccchHHHHHHHhCCCCCCc
Q 033139 32 SIKGIGRRLANIVCKKADVDMNKR 55 (126)
Q Consensus 32 ~IyGIG~~~A~~Ic~~~gI~p~~k 55 (126)
.-.|+...+...||+.+|+++..=
T Consensus 23 ~~~G~~~~tv~~Ia~~agvs~~t~ 46 (195)
T 3ppb_A 23 VSQGFHGTSTATIAREAGVATGTL 46 (195)
T ss_dssp HHTCSTTSCHHHHHHHHTCCHHHH
T ss_pred HhcCcccCCHHHHHHHhCCChhHH
Confidence 347999999999999999987543
No 244
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=21.86 E-value=69 Score=23.10 Aligned_cols=42 Identities=10% Similarity=0.133 Sum_probs=34.5
Q ss_pred ccchHHHHHHHhCCCC---CCcCCCCCHHHHHHHHHHHhCCCCccCC
Q 033139 37 GRRLANIVCKKADVDM---NKRAGELSAAELDQLMVVVANPRQFKIP 80 (126)
Q Consensus 37 G~~~A~~Ic~~~gI~p---~~k~~~Ls~~qi~~L~~~i~~~~~~~iP 80 (126)
|..+-.+|++++|+++ -...+.-+|+++.+|.+++.+ ..++|
T Consensus 18 G~e~w~~i~~~a~~~~~~~f~~~~~Y~D~~~~~lv~a~s~--~~g~~ 62 (188)
T 3sj5_A 18 GNDVVDESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSE--KTGKN 62 (188)
T ss_dssp CHHHHHHHHHTTTCCTTCCCCSSCBCCHHHHHHHHHHHHH--HHCCC
T ss_pred CHHHHHHHHHHcCCCCCCceeecceeChHHHHHHHHHHHH--HHCcC
Confidence 7888999999999986 456788899999999999886 44443
No 245
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=21.65 E-value=71 Score=26.27 Aligned_cols=35 Identities=17% Similarity=-0.024 Sum_probs=27.9
Q ss_pred chHHHHHHHhCCCCC-CcC---CCCCHHHHHHHHHHHhC
Q 033139 39 RLANIVCKKADVDMN-KRA---GELSAAELDQLMVVVAN 73 (126)
Q Consensus 39 ~~A~~Ic~~~gI~p~-~k~---~~Ls~~qi~~L~~~i~~ 73 (126)
..+++.++++|++|+ +++ ++|+++.+.+|.+.++.
T Consensus 293 ~k~r~~ld~~G~~p~~~~Ii~SdgLde~~i~~l~~~~~~ 331 (407)
T 3os4_A 293 EKAIAHYEKLGIDPMKKVLVFSDNLDLEKALFLYRHFYQ 331 (407)
T ss_dssp HHHHHHHHHTTCCGGGSEEEECSSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCcCcCceEEEECCCCCHHHHHHHHHHhcC
Confidence 457788899999974 444 88999999999887664
No 246
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=21.65 E-value=61 Score=19.94 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
+.||++|+..|..+|.+
T Consensus 85 ~~ls~~ei~~l~~yl~~ 101 (103)
T 2zzs_A 85 SLLSDDDIANLAAYYSS 101 (103)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 57999999999999863
No 247
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=21.60 E-value=58 Score=20.37 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhC
Q 033139 58 ELSAAELDQLMVVVAN 73 (126)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (126)
.||++|+..|..+|.+
T Consensus 81 ~Lsd~ei~~l~~Yi~~ 96 (99)
T 3dp5_A 81 MIPPADALKIGEYVVA 96 (99)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5999999999999875
No 248
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=21.44 E-value=42 Score=22.64 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=24.5
Q ss_pred hcccccchHHHHHHHhCCCCCCcCCCC-CHHHH
Q 033139 33 IKGIGRRLANIVCKKADVDMNKRAGEL-SAAEL 64 (126)
Q Consensus 33 IyGIG~~~A~~Ic~~~gI~p~~k~~~L-s~~qi 64 (126)
-+|....+...||+.+|+++..=-... |++++
T Consensus 28 ~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L 60 (195)
T 2iu5_A 28 SNAYHQISVSDIMQTAKIRRQTFYNYFQNQEEL 60 (195)
T ss_dssp HSCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHH
T ss_pred hCCCCeeCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 378888999999999999987655555 44444
No 249
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=21.42 E-value=36 Score=22.36 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=19.5
Q ss_pred hhcccccchHHHHHHHhCCCCCC
Q 033139 32 SIKGIGRRLANIVCKKADVDMNK 54 (126)
Q Consensus 32 ~IyGIG~~~A~~Ic~~~gI~p~~ 54 (126)
.-+|....+...||+.+|+++..
T Consensus 22 ~~~G~~~~ti~~Ia~~agvs~~t 44 (188)
T 3qkx_A 22 AREGLNQLSMLKLAKEANVAAGT 44 (188)
T ss_dssp HHSCSTTCCHHHHHHHHTCCHHH
T ss_pred HhcCcccCCHHHHHHHhCCCcch
Confidence 34788899999999999998654
No 250
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=21.17 E-value=25 Score=21.00 Aligned_cols=14 Identities=21% Similarity=0.157 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHh
Q 033139 59 LSAAELDQLMVVVA 72 (126)
Q Consensus 59 Ls~~qi~~L~~~i~ 72 (126)
+|.+|+..|...++
T Consensus 9 ft~~Q~~~Le~~F~ 22 (68)
T 1ftt_A 9 FSQAQVYELERRFK 22 (68)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 45555555555554
No 251
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=21.09 E-value=51 Score=21.60 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=19.8
Q ss_pred ehhhhcccccchHHHHHHHhCCCCCCcCCCC
Q 033139 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGEL 59 (126)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~~gI~p~~k~~~L 59 (126)
.|+.++.||+.+++. +.++||+.-..+.++
T Consensus 5 ~L~dLPNig~~~e~~-L~~~GI~t~~~Lr~~ 34 (93)
T 3mab_A 5 NLSELPNIGKVLEQD-LIKAGIKTPVELKDV 34 (93)
T ss_dssp CGGGSTTCCHHHHHH-HHHTTCCSHHHHHHH
T ss_pred HHhhCCCCCHHHHHH-HHHcCCCCHHHHHhC
Confidence 477888888887765 567787754444333
No 252
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=21.08 E-value=51 Score=19.92 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033139 57 GELSAAELDQLMVVVAN 73 (126)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (126)
+.||++|+..|..+|.+
T Consensus 81 ~~ls~~ei~~l~~yl~s 97 (99)
T 1w2l_A 81 ASLSEREVAALIEFIKQ 97 (99)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 46999999999999974
No 253
>3j21_f 50S ribosomal protein L39E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.99 E-value=33 Score=20.43 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCccCChhh--hhccccccCCccceeehhhH
Q 033139 64 LDQLMVVVANPRQFKIPDWF--LNRQKDYKDGRYSQVVSNAL 103 (126)
Q Consensus 64 i~~L~~~i~~~~~~~iP~w~--~nr~~d~~tg~~~h~i~~dL 103 (126)
=..|.++..+ +-.+|.|. ...++-.+..+..|.=-++|
T Consensus 10 K~rLaK~~kq--Nr~iP~Wv~~KT~~kir~n~KRRhWRRtkL 49 (51)
T 3j21_f 10 KLRLAKALKQ--NRRVPVWVIVKTNRRVLTHPKRRYWRRTKL 49 (51)
T ss_dssp HHHHHHHHHH--TSCCCHHHHHHHTSCCCSCTTCCCTTTCCC
T ss_pred HHHHHHHHhc--cCCCCceEEEeCCCccccCCcccccccccc
Confidence 3467888887 78999995 46666666677777654444
No 254
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=20.97 E-value=1.4e+02 Score=22.85 Aligned_cols=37 Identities=8% Similarity=-0.056 Sum_probs=30.9
Q ss_pred ccchHHHHHHHhCCC----CCCcCCCCCHHHHHHHHHHHhC
Q 033139 37 GRRLANIVCKKADVD----MNKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 37 G~~~A~~Ic~~~gI~----p~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
++.-.+..++..|+. +......|++++.++|.+.+++
T Consensus 255 ~~~~~K~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~ 295 (301)
T 3m5v_A 255 NPIPIKTAMYLAGLIESLEFRLPLCSPSKENFAKIEEVMKK 295 (301)
T ss_dssp TTHHHHHHHHHTTSSSCCCCCTTCCCCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCCCCCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 455678888999997 5567889999999999999986
No 255
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=20.87 E-value=63 Score=18.77 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=16.0
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 033139 54 KRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 54 ~k~~~Ls~~qi~~L~~~i~~ 73 (126)
+....||++|+..|..+|.+
T Consensus 61 Mp~~~ls~~ei~~l~~yl~~ 80 (82)
T 1cch_A 61 MPPNPVTEEEAKILAEWVLS 80 (82)
T ss_dssp CCCCSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 33338999999999999864
No 256
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.31 E-value=1.1e+02 Score=21.66 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.8
Q ss_pred CCcCCCCCHHHHHHHHHHHhC
Q 033139 53 NKRAGELSAAELDQLMVVVAN 73 (126)
Q Consensus 53 ~~k~~~Ls~~qi~~L~~~i~~ 73 (126)
...++.||++|-+.|.+.|..
T Consensus 11 ~~dLs~LteeEr~~Il~VL~R 31 (153)
T 2zet_C 11 RLDLSTLTDEEAEHVWAVVQR 31 (153)
T ss_dssp CCCCTTSCHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHh
Confidence 345789999999999999975
No 257
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=20.24 E-value=18 Score=22.72 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccCChhhhhccccccCC-ccceeehhhHHHHHHHHHHHHHhccc
Q 033139 56 AGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDG-RYSQVVSNALDMKLRDDLERLKKIRY 119 (126)
Q Consensus 56 ~~~Ls~~qi~~L~~~i~~~~~~~iP~w~~nr~~d~~tg-~~~h~i~~dL~~~~~~dI~rl~~I~s 119 (126)
+.++|++|+..--..+.. .+ +|=|.--.|| . +-..--.+.++-||.|++.+-.
T Consensus 9 lr~~s~~EL~~~l~elk~--EL------f~LR~q~atggq---l~n~~~ir~vRr~IARi~Tvl~ 62 (71)
T 1vq8_V 9 IRDMTPAEREAELDDLKT--EL------LNARAVQAAGGA---PENPGRIKELRKAIARIKTIQG 62 (71)
T ss_dssp HHHSCHHHHHHHHHHHHH--HH------HHHHHHHHTTCC---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH--HH------HHHHHHHHhcCC---ccChHHHHHHHHHHHHHHHHHH
Confidence 456788887765555543 22 4555555563 2 1122335889999999988754
No 258
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=20.12 E-value=52 Score=22.17 Aligned_cols=33 Identities=6% Similarity=0.008 Sum_probs=25.2
Q ss_pred hhcccccchHHHHHHHhCCCCCCcCCCC-CHHHH
Q 033139 32 SIKGIGRRLANIVCKKADVDMNKRAGEL-SAAEL 64 (126)
Q Consensus 32 ~IyGIG~~~A~~Ic~~~gI~p~~k~~~L-s~~qi 64 (126)
.-+|+...+...||+.+|+++..=-... |++++
T Consensus 27 ~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L 60 (217)
T 3nrg_A 27 AQNDYDSVSINRITERAGIAKGSFYQYFADKKDC 60 (217)
T ss_dssp HHSCGGGCCHHHHHHHHTCCTTGGGGTCSSHHHH
T ss_pred HhcCcccCCHHHHHHHhCCcHHHHHHHcCCHHHH
Confidence 3478889999999999999987665555 44443
No 259
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=20.08 E-value=56 Score=23.74 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=23.1
Q ss_pred cCCCCeehheehhhhcccccchHHHHHHH-hCC
Q 033139 19 NVDGKQKIMFALTSIKGIGRRLANIVCKK-ADV 50 (126)
Q Consensus 19 ~l~~~K~v~~aLt~IyGIG~~~A~~Ic~~-~gI 50 (126)
+.+.+++..++++.-.|-|++|..+.+++ +|+
T Consensus 16 ~~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 16 QPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred hccCCCcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34567778899999999999988887766 784
No 260
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.02 E-value=28 Score=20.90 Aligned_cols=11 Identities=36% Similarity=0.900 Sum_probs=7.2
Q ss_pred CChhhhhcccc
Q 033139 79 IPDWFLNRQKD 89 (126)
Q Consensus 79 iP~w~~nr~~d 89 (126)
|-.||-|||.-
T Consensus 53 V~~WFqNrR~k 63 (75)
T 2m0c_A 53 VQVWFQNRRAK 63 (75)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhHHHHHH
Confidence 45688887753
Done!