BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033140
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip
Revealed By Cryo-electron Microscopy
pdb|3J1Z|Q Chain Q, Inward-facing Conformation Of The Zinc Transporter Yiip
Revealed By Cryo-electron Microscopy
Length = 306
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66
G H LR R+AG ++++ H+ +D S++ AH + + ++ K+ E +EV IH DP
Sbjct: 232 GLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRV-KAAFEDAEVIIHQDPV- 289
Query: 67 FQFSPST 73
Q P+T
Sbjct: 290 -QVEPTT 295
>pdb|2ZZT|A Chain A, Crystal Structure Of The Cytosolic Domain Of The Cation
Diffusion Facilitator Family Protein
Length = 107
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
HR+R RR G+ +++ I VD SV AH + +R + K ++ +V IH++P
Sbjct: 29 HRVRIRRVGTKYFIEXDIEVDGKXSVKDAHELTVKIRKEXLKRRDDIEDVTIHVEP 84
>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|B Chain B, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|C Chain C, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|D Chain D, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
Length = 283
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
G H LR R++G + ++ +H+ ++ + AH V + V I + P S+V IH DP
Sbjct: 223 GAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDP 279
>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip
pdb|2QFI|B Chain B, Structure Of The Zinc Transporter Yiip
Length = 300
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
G H LR R++G + ++ +H+ ++ + AH V + V I + P S+V IH DP
Sbjct: 230 GAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDP 286
>pdb|3BYP|A Chain A, Mode Of Action Of A Putative Zinc Transporter Czrb
pdb|3BYP|B Chain B, Mode Of Action Of A Putative Zinc Transporter Czrb
pdb|3BYR|A Chain A, Mode Of Action Of A Putative Zinc Transporter Czrb (Zn
Form)
Length = 94
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
H L+ RRAG +L+ H+VV + V AH + + + + ++ P + + IH++P
Sbjct: 31 HDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEP 85
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 94 LDIDAVVYNTLSTKFPEVANRDLW 117
LDI TL K+P+++ DLW
Sbjct: 68 LDIPRKALETLKKKYPQISYADLW 91
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 94 LDIDAVVYNTLSTKFPEVANRDLW 117
LDI TL K+P+++ DLW
Sbjct: 69 LDIPRKALETLKKKYPQISYADLW 92
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 94 LDIDAVVYNTLSTKFPEVANRDLW 117
LDI TL K+P+++ DLW
Sbjct: 69 LDIPRKALETLKKKYPQISYADLW 92
>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2)
pdb|4GZA|H Chain H, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 577
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 31 FSSVSAAHGVGENVRHQIHKSHPEVSEVF 59
F S HG G ++R++I K PE S+ +
Sbjct: 105 FVSDYETHGAGFSIRYEIFKRGPECSQNY 133
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 65 AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDI 96
++ Q P ++D LG+ GC ++N+ V + D+
Sbjct: 283 SFDQEDPKSLDMLGMHGCA--TANLAVQNADL 312
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 65 AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDI 96
++ Q P ++D LG+ GC ++N+ V + D+
Sbjct: 330 SFDQEDPKSLDMLGMHGCA--TANLAVQNADL 359
>pdb|3C6K|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6M|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
Length = 381
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 74 MDQLGLEGCKAHSSNICVDDLD-IDAVVYNTLSTKFPEVANRDLWATHSLAFDY 126
+DQ+ ++GCK + C D LD + Y L V R +A FDY
Sbjct: 236 IDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKR--YAKEGREFDY 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,705,281
Number of Sequences: 62578
Number of extensions: 134569
Number of successful extensions: 319
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 15
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)