Query 033140
Match_columns 126
No_of_seqs 187 out of 1091
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 10:18:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0053 MMT1 Predicted Co/Zn/C 99.5 2.5E-14 5.3E-19 116.7 9.6 70 2-71 227-296 (304)
2 TIGR01297 CDF cation diffusion 99.5 2.4E-13 5.2E-18 106.6 8.9 64 2-65 204-268 (268)
3 PRK09509 fieF ferrous iron eff 99.4 6.8E-13 1.5E-17 107.0 9.5 65 2-67 225-289 (299)
4 PF01545 Cation_efflux: Cation 99.3 2.5E-11 5.4E-16 95.6 10.2 66 2-67 217-283 (284)
5 PRK03557 zinc transporter ZitB 99.2 1.3E-10 2.8E-15 94.7 9.2 61 2-66 233-293 (312)
6 KOG1485 Mitochondrial Fe2+ tra 98.1 1.2E-05 2.5E-10 68.7 6.8 64 3-67 339-402 (412)
7 COG1230 CzcD Co/Zn/Cd efflux s 97.3 0.00084 1.8E-08 55.3 7.1 61 2-66 234-295 (296)
8 KOG1482 Zn2+ transporter [Inor 97.2 0.0016 3.4E-08 55.2 7.6 64 2-69 306-370 (379)
9 KOG1483 Zn2+ transporter ZNT1 95.9 0.029 6.3E-07 47.9 7.0 60 2-66 311-371 (404)
10 PF14535 AMP-binding_C_2: AMP- 94.0 1.2 2.7E-05 30.0 9.7 63 2-66 16-80 (96)
11 PRK10597 DNA damage-inducible 87.5 5.2 0.00011 27.1 7.3 70 22-106 3-73 (81)
12 PF09580 Spore_YhcN_YlaJ: Spor 85.0 3.2 6.9E-05 30.7 5.8 59 4-66 86-144 (177)
13 PF03780 Asp23: Asp23 family; 84.8 9.7 0.00021 25.6 8.5 53 11-63 50-105 (108)
14 PF06183 DinI: DinI-like famil 80.4 2.1 4.7E-05 27.6 2.9 56 35-106 4-59 (65)
15 TIGR02898 spore_YhcN_YlaJ spor 79.5 15 0.00032 27.7 7.5 61 4-66 65-125 (158)
16 PF00873 ACR_tran: AcrB/AcrD/A 66.0 25 0.00054 33.1 7.2 43 20-63 559-601 (1021)
17 PF01883 DUF59: Domain of unkn 63.5 18 0.0004 22.7 4.3 39 17-60 33-72 (72)
18 COG3965 Predicted Co/Zn/Cd cat 57.7 12 0.00026 31.0 3.2 38 12-49 254-294 (314)
19 TIGR02610 PHA_gran_rgn putativ 55.2 30 0.00065 23.7 4.4 32 22-53 2-33 (91)
20 PRK00745 4-oxalocrotonate taut 51.2 52 0.0011 19.8 5.9 44 24-67 4-48 (62)
21 PF00408 PGM_PMM_IV: Phosphogl 51.2 60 0.0013 20.5 5.5 35 12-49 39-73 (73)
22 PF09650 PHA_gran_rgn: Putativ 49.0 38 0.00082 22.8 4.1 30 24-53 1-30 (87)
23 TIGR00915 2A0602 The (Largely 48.6 1.4E+02 0.003 28.6 9.0 44 19-62 569-613 (1044)
24 PF01076 Mob_Pre: Plasmid reco 48.3 76 0.0017 24.1 6.2 50 16-65 75-130 (196)
25 cd02413 40S_S3_KH K homology R 48.0 48 0.001 22.0 4.4 58 7-66 19-78 (81)
26 PRK14637 hypothetical protein; 46.5 96 0.0021 23.0 6.3 44 7-50 24-67 (151)
27 PRK02289 4-oxalocrotonate taut 46.0 68 0.0015 19.5 5.9 43 24-66 4-47 (60)
28 PF03389 MobA_MobL: MobA/MobL 46.0 92 0.002 24.2 6.4 46 17-62 64-109 (216)
29 PF12984 DUF3868: Domain of un 45.4 60 0.0013 22.8 4.8 28 3-30 27-54 (115)
30 TIGR03221 muco_delta muconolac 45.2 43 0.00094 23.1 3.9 24 20-43 2-25 (90)
31 TIGR00668 apaH bis(5'-nucleosy 44.8 30 0.00065 28.4 3.6 31 21-51 116-146 (279)
32 PRK14647 hypothetical protein; 44.6 1.2E+02 0.0026 22.5 6.6 45 7-51 24-68 (159)
33 PRK14641 hypothetical protein; 43.7 1E+02 0.0022 23.5 6.1 44 7-50 25-68 (173)
34 PF13356 DUF4102: Domain of un 43.7 91 0.002 20.4 5.7 29 22-50 48-76 (89)
35 PRK14639 hypothetical protein; 42.5 1.3E+02 0.0028 21.9 6.4 47 7-53 13-59 (140)
36 cd02412 30S_S3_KH K homology R 41.8 1.1E+02 0.0024 21.1 5.7 58 7-66 50-107 (109)
37 TIGR00013 taut 4-oxalocrotonat 40.9 80 0.0017 18.9 6.5 45 22-67 3-48 (63)
38 PRK14640 hypothetical protein; 40.4 1.3E+02 0.0029 22.1 6.3 45 7-51 22-66 (152)
39 KOG1484 Putative Zn2+ transpor 40.3 1.2E+02 0.0026 26.0 6.5 59 2-65 288-347 (354)
40 COG2098 Uncharacterized protei 40.2 35 0.00075 24.6 2.9 36 32-68 34-69 (116)
41 PRK14634 hypothetical protein; 39.7 1.4E+02 0.0029 22.2 6.2 45 7-51 23-69 (155)
42 PRK00092 ribosome maturation p 39.6 1.4E+02 0.0031 21.8 6.3 45 7-51 23-67 (154)
43 PF02576 DUF150: Uncharacteris 39.5 1E+02 0.0022 22.1 5.4 45 6-50 11-55 (141)
44 PF04456 DUF503: Protein of un 39.4 1E+02 0.0022 20.9 5.0 43 21-66 4-46 (90)
45 PF12327 FtsZ_C: FtsZ family, 38.0 51 0.0011 22.3 3.4 28 22-49 39-66 (95)
46 PRK01964 4-oxalocrotonate taut 37.3 97 0.0021 18.8 5.7 44 24-67 4-48 (64)
47 PF02426 MIase: Muconolactone 36.9 1.2E+02 0.0026 20.8 5.1 27 20-46 3-29 (91)
48 PF00438 S-AdoMet_synt_N: S-ad 36.7 75 0.0016 22.2 4.1 60 33-106 15-74 (100)
49 cd02411 archeal_30S_S3_KH K ho 36.6 1E+02 0.0022 20.3 4.6 56 7-64 27-82 (85)
50 PF00368 HMG-CoA_red: Hydroxym 36.3 2.7E+02 0.0059 23.7 8.6 55 6-60 139-193 (373)
51 COG4669 EscJ Type III secretor 36.2 1.1E+02 0.0023 24.9 5.4 73 38-114 108-185 (246)
52 KOG0968 DNA polymerase zeta, c 36.1 1.6E+02 0.0035 29.4 7.3 81 24-107 1139-1235(1488)
53 PRK14638 hypothetical protein; 33.6 2E+02 0.0042 21.2 6.2 45 7-51 24-69 (150)
54 cd00491 4Oxalocrotonate_Tautom 33.2 1E+02 0.0023 18.0 6.2 44 24-67 3-47 (58)
55 cd07422 MPP_ApaH Escherichia c 32.7 84 0.0018 25.2 4.4 31 20-50 113-143 (257)
56 cd04870 ACT_PSP_1 CT domains f 31.6 1.3E+02 0.0029 18.7 5.7 30 6-35 25-54 (75)
57 COG3696 Putative silver efflux 31.5 2.2E+02 0.0047 27.7 7.3 38 24-62 562-599 (1027)
58 cd04900 ACT_UUR-like_1 ACT dom 30.3 1.4E+02 0.003 18.5 5.5 45 6-50 27-71 (73)
59 PRK15127 multidrug efflux syst 30.2 1.8E+02 0.0039 27.9 6.7 44 19-62 569-613 (1049)
60 PRK10555 aminoglycoside/multid 30.1 1.8E+02 0.0039 27.8 6.7 45 19-63 568-613 (1037)
61 smart00796 AHS1 Allophanate hy 30.0 75 0.0016 24.5 3.6 53 12-68 2-62 (201)
62 cd00580 CHMI 5-carboxymethyl-2 29.7 1.9E+02 0.004 19.8 7.5 38 18-55 57-94 (113)
63 PRK02220 4-oxalocrotonate taut 29.7 1.3E+02 0.0028 17.9 5.8 43 24-66 4-47 (61)
64 PRK04191 rps3p 30S ribosomal p 29.5 1.5E+02 0.0032 23.1 5.2 62 7-70 29-90 (207)
65 PRK09577 multidrug efflux prot 29.5 1.4E+02 0.0031 28.4 6.0 41 19-60 566-606 (1032)
66 COG0483 SuhB Archaeal fructose 29.0 1.5E+02 0.0032 23.5 5.2 58 34-110 5-62 (260)
67 PF01514 YscJ_FliF: Secretory 28.4 1.6E+02 0.0035 22.7 5.2 79 36-119 112-191 (206)
68 PRK10503 multidrug efflux syst 28.0 2.1E+02 0.0046 27.4 6.7 43 19-62 567-609 (1040)
69 PF10646 Germane: Sporulation 27.7 1.5E+02 0.0032 19.8 4.4 47 17-63 63-109 (117)
70 PF11272 DUF3072: Protein of u 27.6 79 0.0017 20.1 2.7 22 27-48 34-55 (57)
71 PRK10931 adenosine-3'(2'),5'-b 26.6 1.5E+02 0.0033 22.9 4.8 57 34-110 2-58 (246)
72 TIGR03406 FeS_long_SufT probab 26.6 2.9E+02 0.0062 21.0 7.4 52 8-63 100-154 (174)
73 cd01790 Herp_N Homocysteine-re 26.6 2E+02 0.0043 19.1 4.7 27 11-38 4-30 (79)
74 PRK05783 hypothetical protein; 25.1 2.2E+02 0.0048 19.2 5.3 38 26-64 46-83 (84)
75 KOG2802 Membrane protein HUEL 24.2 75 0.0016 27.9 2.8 57 6-62 408-502 (503)
76 TIGR01008 rpsC_E_A ribosomal p 24.2 2.2E+02 0.0047 22.1 5.2 62 7-70 27-88 (195)
77 PRK12337 2-phosphoglycerate ki 23.5 78 0.0017 28.0 2.9 23 29-51 105-127 (475)
78 PRK14645 hypothetical protein; 23.3 3.2E+02 0.0068 20.3 6.5 45 7-51 25-71 (154)
79 TIGR02768 TraA_Ti Ti-type conj 23.2 3.7E+02 0.0081 24.8 7.3 48 15-62 79-126 (744)
80 PRK14633 hypothetical protein; 23.0 3.1E+02 0.0068 20.1 6.3 44 7-51 20-63 (150)
81 PRK11589 gcvR glycine cleavage 22.6 2.9E+02 0.0064 21.1 5.6 39 6-44 121-165 (190)
82 cd02637 R3H_PARN R3H domain of 22.6 46 0.001 21.3 1.0 24 96-119 28-51 (65)
83 COG3052 CitD Citrate lyase, ga 22.6 64 0.0014 22.6 1.7 36 56-106 15-55 (98)
84 PRK05934 type III secretion sy 22.1 3.1E+02 0.0066 23.4 5.9 81 33-119 65-145 (341)
85 PRK10757 inositol monophosphat 22.0 2.2E+02 0.0048 22.3 5.0 57 34-110 5-61 (267)
86 PF06385 Baculo_LEF-11: Baculo 21.0 85 0.0018 21.8 2.1 34 90-124 1-34 (94)
87 PRK14632 hypothetical protein; 20.4 3.8E+02 0.0083 20.2 6.1 44 7-51 24-67 (172)
No 1
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.55 E-value=2.5e-14 Score=116.71 Aligned_cols=70 Identities=37% Similarity=0.643 Sum_probs=66.2
Q ss_pred CCCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCC
Q 033140 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSP 71 (126)
Q Consensus 2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~~~ 71 (126)
+|||.++|++|+|+.|+.+++|+|++|+|+||+.+||+|++++|++|++.+|.+.+++||+||.......
T Consensus 227 ~~~V~~v~~lr~R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~~ 296 (304)
T COG0053 227 VPGVKGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEEE 296 (304)
T ss_pred CCcceeeecceeeeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccccc
Confidence 5899999999999999999999999999999999999999999999999999889999999999876543
No 2
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=99.47 E-value=2.4e-13 Score=106.62 Aligned_cols=64 Identities=36% Similarity=0.648 Sum_probs=61.8
Q ss_pred CCCcceeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecC
Q 033140 2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65 (126)
Q Consensus 2 vpgV~~Vh~LR~R~~G~-~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~ 65 (126)
.|||.++|++|+|+.|+ .+++++|+.+++++|+.++|++++++|+++++++|++.+|+||+||+
T Consensus 204 ~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 204 IPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred CCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 58999999999999999 99999999999999999999999999999999999999999999994
No 3
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=99.43 E-value=6.8e-13 Score=107.04 Aligned_cols=65 Identities=26% Similarity=0.528 Sum_probs=61.7
Q ss_pred CCCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 033140 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (126)
Q Consensus 2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~ 67 (126)
+|||.++|++|+|++|+..++++||.+++++++.|+|+|++++|++|++++|. .+++||+||+..
T Consensus 225 ~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~-~~v~ihveP~~~ 289 (299)
T PRK09509 225 WPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPG-SDVIIHQDPCSV 289 (299)
T ss_pred CCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEEeCCCCC
Confidence 58999999999999999999999999999999999999999999999999996 579999999763
No 4
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=99.29 E-value=2.5e-11 Score=95.59 Aligned_cols=66 Identities=29% Similarity=0.489 Sum_probs=62.6
Q ss_pred CCCcceeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 033140 2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (126)
Q Consensus 2 vpgV~~Vh~LR~R~~G~-~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~ 67 (126)
.|||.+++++|+|+.|+ .+++++++.++++++++++|++.+++++.+++++|++.+++||++|+..
T Consensus 217 ~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 217 VPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE 283 (284)
T ss_dssp TSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred CCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 48999999999999999 9999999999999999999999999999999999999999999999864
No 5
>PRK03557 zinc transporter ZitB; Provisional
Probab=99.18 E-value=1.3e-10 Score=94.70 Aligned_cols=61 Identities=10% Similarity=0.165 Sum_probs=57.1
Q ss_pred CCCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (126)
Q Consensus 2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~ 66 (126)
+|||.++|++|+|++|+.+++++|+.+++++ ++|+|++++|++|+++++ +.+++||+||..
T Consensus 233 ~~gV~~vh~l~~~~~G~~~~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~-i~~vtIh~e~~~ 293 (312)
T PRK03557 233 IPEVRNVHHVHVWMVGEKPVMTLHVQVIPPH---DHDALLDRIQDYLMHHYQ-IEHATIQMEYQP 293 (312)
T ss_pred CCCceeEEEEEEEEeCCeEEEEEEEEECCCC---CHHHHHHHHHHHHHHhCC-CCEEEEEeccCc
Confidence 6999999999999999999999999999986 679999999999999987 799999999975
No 6
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=98.06 E-value=1.2e-05 Score=68.65 Aligned_cols=64 Identities=34% Similarity=0.591 Sum_probs=59.3
Q ss_pred CCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 033140 3 LSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (126)
Q Consensus 3 pgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~ 67 (126)
+.+..++.+|++..|..++|++||++++++++..||+|.+.+++.|.. +|.+.+++||+|-...
T Consensus 339 ~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~-l~ever~fvh~d~e~~ 402 (412)
T KOG1485|consen 339 KLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIEL-LPEVERAFVHIDYEFL 402 (412)
T ss_pred CccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHHHHHHHHhh-cchheeeeeecCcccc
Confidence 468899999999999999999999999999999999999999999975 9999999999986654
No 7
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00084 Score=55.26 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=51.8
Q ss_pred CCCcceeeeEEEEee-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140 2 SLSLQGCHRLRGRRA-GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (126)
Q Consensus 2 vpgV~~Vh~LR~R~~-G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~ 66 (126)
.|||.++|++++|.. |....+.+|+.+++..+-++ +.+++++.+.+++. +.++||++|+..
T Consensus 234 ~~~v~~vhdlHvWsi~~~~~~~t~Hv~v~~~~~~~~---~~~~~~~~l~~~~~-I~hvTiQ~e~~~ 295 (296)
T COG1230 234 IPGVASVHDLHVWSITGGEHALTLHVVVDEVADADA---ALDQIVRRLLEKYG-IEHVTIQLETEG 295 (296)
T ss_pred CCCccceeecccCCCCCCceeEEEEEEecCccchHH---HHHHHHHHHhhhcC-cceEEEEecCCC
Confidence 699999999999999 55799999999995544433 88899999988887 899999998753
No 8
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.0016 Score=55.22 Aligned_cols=64 Identities=23% Similarity=0.288 Sum_probs=57.1
Q ss_pred CCCcceeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCC
Q 033140 2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF 69 (126)
Q Consensus 2 vpgV~~Vh~LR~R~~G~-~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~ 69 (126)
++||..||+|++|...- +..+.+||.++++ +++.+|-+++.+.|+++|. +.+++|++||.....
T Consensus 306 iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~---ad~~~vL~~~~~~i~~~~~-~~~vTiQie~~~~~~ 370 (379)
T KOG1482|consen 306 IEGVKAVHDLHIWSITVGKVALSVHLAIDSE---ADAEEVLDEARSLIKRRYG-ISHVTIQIEPYTEEM 370 (379)
T ss_pred hcceeEEEEEEEEEEecCceEEEEEEeecCC---CCHHHHHHHHHHHHHhhcc-eEEEEEEecCCccch
Confidence 58999999999999865 7899999999966 6788899999999999998 799999999998654
No 9
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.029 Score=47.94 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=48.8
Q ss_pred CCCcceeeeEEEEee-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140 2 SLSLQGCHRLRGRRA-GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (126)
Q Consensus 2 vpgV~~Vh~LR~R~~-G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~ 66 (126)
+|||..||++.+|+. |.++.+.+||.++-- .+--++++.|++-+. .++ |..+||+.|=..
T Consensus 311 ~~gv~~vh~lhvWqL~~~r~IAt~Hi~~~~p---~~~~~~a~~ir~~fh-~~G-Ihs~TiqPeF~~ 371 (404)
T KOG1483|consen 311 VPGVISVHDLHVWQLAGSRIIATIHIQIQNP---KEYMKIAEKIRSYFH-DQG-IHSTTIQPEFAP 371 (404)
T ss_pred CcceeeeeeeeeeeeccceEEEEEEEEecCc---HHHHHHHHHHHHHHH-hcC-Ccceeeccchhh
Confidence 699999999999998 889999999999754 223389999988886 466 788998766554
No 10
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=94.01 E-value=1.2 Score=30.04 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=52.2
Q ss_pred CCCcceeeeEEEEeeCCEEEEEEEEEECCCCC--HHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSS--VSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (126)
Q Consensus 2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~ls--v~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~ 66 (126)
+|++.+-..|.+.+.|..=.+.+.+++.+..+ ..+..+++++|+++|+..++ + .+.|++-|..
T Consensus 16 ~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lg-v-~~~V~lv~~g 80 (96)
T PF14535_consen 16 FPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLG-V-RPEVELVPPG 80 (96)
T ss_dssp STTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHS-S--EEEEEE-TT
T ss_pred CcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcC-c-eEEEEEECCC
Confidence 57888888999999999889999999999874 57899999999999999988 4 4677776664
No 11
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=87.49 E-value=5.2 Score=27.11 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=44.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCee-EEEEEEecCCCCCCCCcccccCccccccCCCCcccCchhhHHHH
Q 033140 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVS-EVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVV 100 (126)
Q Consensus 22 VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~-~V~IHieP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v 100 (126)
|++.+.=...++-....+|..++.++|...||... +|.| -|.... ++.+.|... -+...|+.++
T Consensus 3 VEi~~dK~~~lp~ga~~AL~~EL~kRl~~~fPd~~~~v~V--r~~s~n-------~lsv~g~~k------~dK~~i~eiL 67 (81)
T PRK10597 3 IEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSV--RYAAAN-------NLSVIGATK------EDKDRISEIL 67 (81)
T ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCccEEE--eecCCC-------ceEecCCCc------chHHHHHHHH
Confidence 44444444677777888999999999999999742 3555 444333 334433320 1345588888
Q ss_pred HHHhhh
Q 033140 101 YNTLST 106 (126)
Q Consensus 101 ~~~~~~ 106 (126)
.++..+
T Consensus 68 qE~we~ 73 (81)
T PRK10597 68 QETWES 73 (81)
T ss_pred HHHHhC
Confidence 877766
No 12
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=85.03 E-value=3.2 Score=30.72 Aligned_cols=59 Identities=14% Similarity=0.321 Sum_probs=48.2
Q ss_pred CcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140 4 SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (126)
Q Consensus 4 gV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~ 66 (126)
.+.+|.+..+--+|...+|-+.+.-. -.....|..+|+++++..+|.+..|.|--+|.-
T Consensus 86 ~~~~V~~A~vvv~~~~a~Vav~~~~~----~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~~ 144 (177)
T PF09580_consen 86 KVPGVEDATVVVTDDNAYVAVDLDFN----RFNTKKIKKKVEKAVKSADPRIYNVYVSTDPDI 144 (177)
T ss_pred cCCCceEEEEEEECCEEEEEEEeccc----ccchhHHHHHHHHHHHHhCCCccEEEEEcCHHH
Confidence 46677778888889999998888832 345668999999999999999889999877764
No 13
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=84.77 E-value=9.7 Score=25.65 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=36.3
Q ss_pred EEEEee-CCEEEEEEEEEECCCCCHHH-HHHHHHHHHHHHHhhCC-CeeEEEEEEe
Q 033140 11 LRGRRA-GSSLYLDVHIVVDPFSSVSA-AHGVGENVRHQIHKSHP-EVSEVFIHID 63 (126)
Q Consensus 11 LR~R~~-G~~~~VdlhI~Vd~~lsv~e-AH~I~~~IE~~I~~~~p-~v~~V~IHie 63 (126)
++++.- +..+.+++++.+..+.++.+ +.++-++|++.|....+ .+.+|.|++.
T Consensus 50 v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 50 VKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred eEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 566655 78899999999999988765 45556666666655433 1346666654
No 14
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=80.38 E-value=2.1 Score=27.64 Aligned_cols=56 Identities=20% Similarity=0.385 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCCCcccccCccccccCCCCcccCchhhHHHHHHHhhh
Q 033140 35 SAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLST 106 (126)
Q Consensus 35 ~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~ 106 (126)
....+|..++.++|...||+ ..|.|. +... .++.+.|... -+...|+.++.+++.+
T Consensus 4 ga~~AL~~EL~kRl~~~yPd-~~v~Vr--~~s~-------~~l~v~g~~~------~~k~~i~~iLqe~we~ 59 (65)
T PF06183_consen 4 GALEALESELTKRLHRQYPD-AEVRVR--PGSA-------NGLSVSGGKK------DDKERIEEILQEMWED 59 (65)
T ss_dssp THHHHHHHHHHHHHHHH-SS--EEEEE--EESS--------EEEEES--H------HHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHCCC-ceEeee--eccc-------CccccCCcCc------hHHHHHHHHHHHHHhc
Confidence 34567889999999999997 566664 3332 2444444430 1144577777777655
No 15
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=79.50 E-value=15 Score=27.73 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=49.9
Q ss_pred CcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140 4 SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (126)
Q Consensus 4 gV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~ 66 (126)
.+.+|.+-.+--+|...+|=+ .++.+..-..+.+|..+|++++++..|.+.+|.|--+|.-
T Consensus 65 ~v~~V~dA~vvVtg~~A~Vgv--~~~~~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd~ 125 (158)
T TIGR02898 65 KVKGVKDATVVITGNYAYVGV--DLTNGLEGSVTDELKEKVAETVKSTDNRIANVYVSADPDT 125 (158)
T ss_pred cCCCCceEEEEEECCEEEEEE--EcCCCcchhhHHHHHHHHHHHHHhhCCCcceEEEEcCHHH
Confidence 456777788888999888765 4555666677899999999999998999999999888874
No 16
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=65.98 E-value=25 Score=33.05 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=36.6
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 033140 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (126)
Q Consensus 20 ~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHie 63 (126)
-.+.+.+.+|++.++++..++++++|+.|+ +.|++.+++..+-
T Consensus 559 ~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~-~~p~V~~v~s~vG 601 (1021)
T PF00873_consen 559 GEFYVSVELPPGTSLEETDAIVKQVEDILK-EDPEVKSVSSRVG 601 (1021)
T ss_dssp SEEEEEEEESTTC-HHHHHHHHHHHHHHHH-TTTTEEEEEEEES
T ss_pred CceEEEEeeccCchHHHHHHHHHHHHHHHH-hhhhhhccceEec
Confidence 357889999999999999999999999997 6899988876653
No 17
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=63.51 E-value=18 Score=22.67 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=25.7
Q ss_pred CCEEEEEEEEEEC-CCCCHHHHHHHHHHHHHHHHhhCCCeeEEEE
Q 033140 17 GSSLYLDVHIVVD-PFSSVSAAHGVGENVRHQIHKSHPEVSEVFI 60 (126)
Q Consensus 17 G~~~~VdlhI~Vd-~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~I 60 (126)
|..+.++ +.++ +..+ ....+...++++|+ .+|++..|.|
T Consensus 33 ~~~V~v~--l~l~~~~~~--~~~~l~~~i~~~l~-~l~gv~~V~V 72 (72)
T PF01883_consen 33 GGKVSVS--LELPTPACP--AAEPLREEIREALK-ALPGVKSVKV 72 (72)
T ss_dssp TCEEEEE--E--SSTTHT--THHHHHHHHHHHHH-TSTT-SEEEE
T ss_pred CCEEEEE--EEECCCCch--HHHHHHHHHHHHHH-hCCCCceEeC
Confidence 4555555 4444 3333 67889999999998 7888887765
No 18
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=57.65 E-value=12 Score=31.03 Aligned_cols=38 Identities=13% Similarity=0.394 Sum_probs=27.2
Q ss_pred EEEeeCCEEEEEEEEEECCCCCHHHHHH---HHHHHHHHHH
Q 033140 12 RGRRAGSSLYLDVHIVVDPFSSVSAAHG---VGENVRHQIH 49 (126)
Q Consensus 12 R~R~~G~~~~VdlhI~Vd~~lsv~eAH~---I~~~IE~~I~ 49 (126)
++-+.|..+++|+|..+|++++-...++ |-+++...|.
T Consensus 254 yvArVGr~l~IEi~fiip~~~~ar~Ved~d~Irdei~~slg 294 (314)
T COG3965 254 YVARVGRGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLG 294 (314)
T ss_pred HHHHhccceEEEEEEEeCCccCCccchhHHHHHHHHHHHhh
Confidence 3557799999999999998877555554 4555555554
No 19
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=55.21 E-value=30 Score=23.67 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=29.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCC
Q 033140 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHP 53 (126)
Q Consensus 22 VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p 53 (126)
.+++|..|-.+..++|.+.++.+.+.+.++|.
T Consensus 2 ~~I~I~r~H~Lg~~eAr~~~e~~a~~l~~~~~ 33 (91)
T TIGR02610 2 SSISVERDHSLGPAAARAKAEDLARKLTDRYG 33 (91)
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 36899999999999999999999999999886
No 20
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=51.24 E-value=52 Score=19.76 Aligned_cols=44 Identities=16% Similarity=0.018 Sum_probs=34.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCC-CeeEEEEEEecCCC
Q 033140 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHP-EVSEVFIHIDPAYF 67 (126)
Q Consensus 24 lhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p-~v~~V~IHieP~~~ 67 (126)
++|.+.+..|.++-.+++..|-+.+.+.++ .-.+++|-+.....
T Consensus 4 i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~ 48 (62)
T PRK00745 4 FHIELFEGRTVEQKRKLVEEITRVTVETLGCPPESVDIIITDVKR 48 (62)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCChhHEEEEEEEcCh
Confidence 466767778999999999999999998877 33577777766543
No 21
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=51.19 E-value=60 Score=20.45 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=28.1
Q ss_pred EEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q 033140 12 RGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIH 49 (126)
Q Consensus 12 R~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~ 49 (126)
.+|.+|..-.+-+-++.+ +..+++++.+++...|+
T Consensus 39 ~vR~SgTEP~iRv~~Ea~---~~~~~~~~~~~i~~~ik 73 (73)
T PF00408_consen 39 LVRPSGTEPKIRVYVEAP---DEEELEEIAEEIAEAIK 73 (73)
T ss_dssp EEEEESSSSEEEEEEEES---SHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCceEEEEEEeC---CHHHHHHHHHHHHHhhC
Confidence 378899877766666666 88999999999988874
No 22
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=49.04 E-value=38 Score=22.80 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=28.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCC
Q 033140 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHP 53 (126)
Q Consensus 24 lhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p 53 (126)
++|..+-.++.++|.+.+++.-.++.++|+
T Consensus 1 I~I~r~H~Lg~~eAr~~~~~~~~~l~~~~~ 30 (87)
T PF09650_consen 1 IHIERPHSLGREEARRRAEELAEKLAEEYG 30 (87)
T ss_pred CeEEecCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999998
No 23
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=48.56 E-value=1.4e+02 Score=28.57 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=35.7
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhC-CCeeEEEEEE
Q 033140 19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSH-PEVSEVFIHI 62 (126)
Q Consensus 19 ~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~-p~v~~V~IHi 62 (126)
.-.+.+.+++|++.++++..+++.++|+.|++.- |++..+...+
T Consensus 569 ~~~~~v~v~~p~gtsl~~t~~~~~~ve~~l~~~~~~~v~~~~~~~ 613 (1044)
T TIGR00915 569 QGVFMTIVQLPAGATAERTQKVLAQVEKYLLAKEKANVESVFTVN 613 (1044)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCeeEEEEEe
Confidence 3456778889999999999999999999997643 5777776554
No 24
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=48.34 E-value=76 Score=24.09 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=41.0
Q ss_pred eCCEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHHhhCC--CeeEEEEEEecC
Q 033140 16 AGSSLYLDVHIVVDP----FSSVSAAHGVGENVRHQIHKSHP--EVSEVFIHIDPA 65 (126)
Q Consensus 16 ~G~~~~VdlhI~Vd~----~lsv~eAH~I~~~IE~~I~~~~p--~v~~V~IHieP~ 65 (126)
....+.+++-|..++ +++-+++.+..+..-+-+.+.+| +|..+.||.|-.
T Consensus 75 kdav~~~e~iit~~~e~~~~~~~e~~~~~~~~~~~~~~~r~g~~ni~~a~vH~DE~ 130 (196)
T PF01076_consen 75 KDAVLAIEFIITASPEFFNDLDPEQQKRWFEDSLEWLQERYGNENIVSAVVHLDET 130 (196)
T ss_pred ccceeEEEEEEeCChHHhcchhhHHHHHHHHHHHHHHHHHCCchhEEEEEEECCCC
Confidence 345678888898887 57888888999999999999999 667788998766
No 25
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=47.99 E-value=48 Score=21.99 Aligned_cols=58 Identities=7% Similarity=0.047 Sum_probs=38.3
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE--ecCC
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI--DPAY 66 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHi--eP~~ 66 (126)
++..+.+.+....+.|.++..-|+-+--..+..| +++++.|++.++ +....|.+ ++..
T Consensus 19 gis~IeI~Rt~~~i~I~I~tarPg~vIG~~G~~i-~~L~~~L~k~~~-~~~~~i~v~~~~v~ 78 (81)
T cd02413 19 GYSGVEVRVTPTRTEIIIRATRTQNVLGEKGRRI-RELTSLVQKRFN-FPEGSVELYAEKVA 78 (81)
T ss_pred CeeeEEEEEcCCeEEEEEEeCCCceEECCCchhH-HHHHHHHHHHhC-CCCCeEEEEEEEcc
Confidence 6778889998889999999998887644444443 456666665554 34444444 6554
No 26
>PRK14637 hypothetical protein; Provisional
Probab=46.45 E-value=96 Score=22.98 Aligned_cols=44 Identities=9% Similarity=-0.061 Sum_probs=37.8
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~ 50 (126)
.+-++...+.|....+.+.|.-+..+|+.+..+++..|...|-.
T Consensus 24 eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 24 KLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEA 67 (151)
T ss_pred EEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 46778888888888888888888899999999999999888854
No 27
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=46.05 E-value=68 Score=19.53 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=35.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEecCC
Q 033140 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAY 66 (126)
Q Consensus 24 lhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~-v~~V~IHieP~~ 66 (126)
++|.+.++.|-++-.++++.|-+.+.+.++. ...|+|-+....
T Consensus 4 i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~ 47 (60)
T PRK02289 4 VRIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMP 47 (60)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeC
Confidence 5788888999999999999999999998874 356677666554
No 28
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=45.99 E-value=92 Score=24.20 Aligned_cols=46 Identities=11% Similarity=0.045 Sum_probs=34.3
Q ss_pred CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE
Q 033140 17 GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62 (126)
Q Consensus 17 G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHi 62 (126)
...++=++.|.+|.++|.++--+++...-+......+.+.++-||-
T Consensus 64 na~~are~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~ 109 (216)
T PF03389_consen 64 NARLAREFEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHD 109 (216)
T ss_dssp TS--EEEEEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEE
T ss_pred CCeEeeeeeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEec
Confidence 4467888999999999999999999999888766777778999996
No 29
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=45.36 E-value=60 Score=22.84 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=24.5
Q ss_pred CCcceeeeEEEEeeCCEEEEEEEEEECC
Q 033140 3 LSLQGCHRLRGRRAGSSLYLDVHIVVDP 30 (126)
Q Consensus 3 pgV~~Vh~LR~R~~G~~~~VdlhI~Vd~ 30 (126)
.|-..|.+.++.+.|..++|++.+.+++
T Consensus 27 ~g~i~v~~~~~~~~gd~L~V~m~idl~~ 54 (115)
T PF12984_consen 27 TGQIKVTNVSVEKQGDSLHVDMDIDLSG 54 (115)
T ss_pred CCcEEEEeeEEEEECCEEEEEEEEEecc
Confidence 4567888999999999999999999965
No 30
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=45.23 E-value=43 Score=23.12 Aligned_cols=24 Identities=4% Similarity=0.034 Sum_probs=21.7
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHH
Q 033140 20 LYLDVHIVVDPFSSVSAAHGVGEN 43 (126)
Q Consensus 20 ~~VdlhI~Vd~~lsv~eAH~I~~~ 43 (126)
+.|.+++.+|++|+.+++.+|..+
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~a~ 25 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIKAR 25 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHHHH
Confidence 578999999999999999999765
No 31
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=44.81 E-value=30 Score=28.38 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=27.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 033140 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKS 51 (126)
Q Consensus 21 ~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~ 51 (126)
++=+|-.++|.+++.+|...+.+||..|+..
T Consensus 116 ~~lVHAGi~P~w~l~~a~~~a~eve~~L~~~ 146 (279)
T TIGR00668 116 LVMAHAGITPQWDLQTAKECARDVEAVLSSD 146 (279)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 3456999999999999999999999999743
No 32
>PRK14647 hypothetical protein; Provisional
Probab=44.62 E-value=1.2e+02 Score=22.48 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=37.8
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS 51 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~ 51 (126)
.+-++...+.|....+.+.|.-+...|+.++-.++..|...|-..
T Consensus 24 ~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~~ 68 (159)
T PRK14647 24 ELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVE 68 (159)
T ss_pred EEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHccc
Confidence 456778888888888888888888999999999999999988644
No 33
>PRK14641 hypothetical protein; Provisional
Probab=43.72 E-value=1e+02 Score=23.49 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=37.4
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~ 50 (126)
.+-++.....|....+.+.|.-++.+++.++-.++..|...|-.
T Consensus 25 eLvdve~~~~~~~~~lrV~ID~~~gv~lDdC~~vSr~Is~~LD~ 68 (173)
T PRK14641 25 YLVSMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLEE 68 (173)
T ss_pred EEEEEEEEeCCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhCc
Confidence 46778888888888888888878889999999999999888854
No 34
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=43.71 E-value=91 Score=20.36 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=23.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 033140 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (126)
Q Consensus 22 VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~ 50 (126)
..+.|.--|.+|+.+|-..+.++...|.+
T Consensus 48 ~~~~lG~~p~~sl~~AR~~a~~~~~~~~~ 76 (89)
T PF13356_consen 48 RRITLGRYPELSLAEAREKARELRALVRQ 76 (89)
T ss_dssp EEEEEEECTTS-HHHHHHHHHHHHHHHCT
T ss_pred EEeccCCCccCCHHHHHHHHHHHHHHHHc
Confidence 34677888999999999999999998864
No 35
>PRK14639 hypothetical protein; Provisional
Probab=42.54 E-value=1.3e+02 Score=21.94 Aligned_cols=47 Identities=9% Similarity=-0.044 Sum_probs=38.6
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCC
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHP 53 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p 53 (126)
.+-++...+.|....+.+.|.=+..+|+.+...++..|...|-..-|
T Consensus 13 eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~d~ 59 (140)
T PRK14639 13 SFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEPP 59 (140)
T ss_pred EEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccc
Confidence 45677777788888888888888889999999999999998865433
No 36
>cd02412 30S_S3_KH K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=41.85 E-value=1.1e+02 Score=21.08 Aligned_cols=58 Identities=17% Similarity=0.195 Sum_probs=40.5
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~ 66 (126)
++.++.+.+....+.|.++..-|+-+ +...-.-.++++..|++.++. ..+.|.+.+..
T Consensus 50 gis~I~I~R~~~~i~I~I~t~rPg~v-IG~~G~~i~~L~~~l~~~~~~-~~~~I~V~ev~ 107 (109)
T cd02412 50 GISRIEIERKADRVEVTIHTARPGII-IGKKGAGIEKLRKELQKLLGN-KKVRINIVEVK 107 (109)
T ss_pred CccEEEEEEcCCCEEEEEEeCCCCcc-cCCchHHHHHHHHHHHHHhCC-CceEEEEEEec
Confidence 56678888888889999999987655 344445557888888776652 35666665543
No 37
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=40.89 E-value=80 Score=18.92 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=32.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEecCCC
Q 033140 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAYF 67 (126)
Q Consensus 22 VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~-v~~V~IHieP~~~ 67 (126)
+.+++. .+..|.++-.+++..|-+.+.+.++. -.+++|.++....
T Consensus 3 i~i~i~-~~grt~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~e~~~ 48 (63)
T TIGR00013 3 VNIYIL-KEGRTDEQKRQLIEGVTEAMAETLGANLESIVVIIDEMPK 48 (63)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCH
Confidence 444444 36789999999999999999888732 2567777766643
No 38
>PRK14640 hypothetical protein; Provisional
Probab=40.44 E-value=1.3e+02 Score=22.09 Aligned_cols=45 Identities=22% Similarity=0.075 Sum_probs=37.5
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS 51 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~ 51 (126)
.+-++...+.|....+.+.|.=+..+|+.++-.++..|...|-..
T Consensus 22 el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~ 66 (152)
T PRK14640 22 ELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVE 66 (152)
T ss_pred EEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 466788888888778888887778899999999999998888643
No 39
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=40.29 E-value=1.2e+02 Score=25.95 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=45.3
Q ss_pred CCCcceeeeEEEEeeCCE-EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecC
Q 033140 2 SLSLQGCHRLRGRRAGSS-LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65 (126)
Q Consensus 2 vpgV~~Vh~LR~R~~G~~-~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~ 65 (126)
.+||.++.+-|-|..++. +...+|+.|..+.+ .+.+...+.+.+.. .+ |.+++|+++-.
T Consensus 288 ~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~dad---e~~vl~~V~~~~~~-~g-V~~ltvQv~~~ 347 (354)
T KOG1484|consen 288 LDGVTSVQNPHFWTLESGSVVGTLHLQVSSDAD---EQSVLAHVTRKLED-AG-VKDLTVQVEKE 347 (354)
T ss_pred cccceeeccCceeeccCCceEEEEEEEEecCcc---hhHHHHHHHHHHHh-cc-eeEEEEEEecc
Confidence 579999999999999885 88999999999844 45566666666643 34 78899986643
No 40
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.16 E-value=35 Score=24.62 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCC
Q 033140 32 SSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQ 68 (126)
Q Consensus 32 lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~ 68 (126)
.|...|..+...|++.|+- .|-+.++-|+++|....
T Consensus 34 vs~~~a~~le~aI~esi~~-QP~v~daeV~Id~~~~K 69 (116)
T COG2098 34 VSPGTAESLEKAIEESIKV-QPFVEDAEVKIDRDKEK 69 (116)
T ss_pred CCccchHHHHHHHHHHHhc-CCceeeEEEEecccccc
Confidence 3556678888889999975 68899999999998544
No 41
>PRK14634 hypothetical protein; Provisional
Probab=39.67 E-value=1.4e+02 Score=22.21 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=37.9
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCC--CCHHHHHHHHHHHHHHHHhh
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPF--SSVSAAHGVGENVRHQIHKS 51 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~--lsv~eAH~I~~~IE~~I~~~ 51 (126)
.+-++...+.|....+.+.|.-+.+ +|+.++-.++..|...|-..
T Consensus 23 elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~ 69 (155)
T PRK14634 23 ELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEAS 69 (155)
T ss_pred EEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhccc
Confidence 4677888888888888888887777 99999999999998888543
No 42
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=39.63 E-value=1.4e+02 Score=21.77 Aligned_cols=45 Identities=9% Similarity=0.040 Sum_probs=38.1
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS 51 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~ 51 (126)
.+-++.....|+...+.+.|.-+...|+.+.-.++..|...|-..
T Consensus 23 ~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~ 67 (154)
T PRK00092 23 ELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVE 67 (154)
T ss_pred EEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 467888888888888888888888899999999999999988543
No 43
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=39.51 E-value=1e+02 Score=22.11 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=35.6
Q ss_pred ceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 033140 6 QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (126)
Q Consensus 6 ~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~ 50 (126)
..+-++.....|....+.+-|.=+..+|+.+.-.++..|...|..
T Consensus 11 ~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 11 LELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp SEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTT
T ss_pred CEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHcc
Confidence 356788999999998888888889999999999999999888865
No 44
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=39.44 E-value=1e+02 Score=20.88 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=30.1
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (126)
Q Consensus 21 ~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~ 66 (126)
.+.+++.+|..-|+++=-.+...+.++++++|+ +. ...+++.+
T Consensus 4 ~l~l~l~lp~~~SLKeKR~vvksl~~klr~rfn-vS--vaEv~~~D 46 (90)
T PF04456_consen 4 VLRLELRLPGAHSLKEKRQVVKSLIDKLRNRFN-VS--VAEVGHQD 46 (90)
T ss_dssp EEEEEEE----SSHHHHHHHHHHHHHHHHHHSS--E--EEEEE-TT
T ss_pred EEEEEEEeccccchhHhHHHHHHHHHHHHhhCC-eE--EEEecCCC
Confidence 467889999999999999999999999999997 54 23444443
No 45
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=38.00 E-value=51 Score=22.29 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=22.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHH
Q 033140 22 LDVHIVVDPFSSVSAAHGVGENVRHQIH 49 (126)
Q Consensus 22 VdlhI~Vd~~lsv~eAH~I~~~IE~~I~ 49 (126)
+=++|...+++++.|..++.+.|.+.+.
T Consensus 39 vLvni~~~~d~~l~ev~~~~~~i~~~~~ 66 (95)
T PF12327_consen 39 VLVNITGGPDLSLSEVNEAMEIIREKAD 66 (95)
T ss_dssp EEEEEEE-TTS-HHHHHHHHHHHHHHSS
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHhh
Confidence 3466788899999999999999988885
No 46
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=37.33 E-value=97 Score=18.84 Aligned_cols=44 Identities=11% Similarity=-0.007 Sum_probs=33.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCCe-eEEEEEEecCCC
Q 033140 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV-SEVFIHIDPAYF 67 (126)
Q Consensus 24 lhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v-~~V~IHieP~~~ 67 (126)
++|.+.+..|.++-.++..+|-+.+.+.++-- .++.|-+.....
T Consensus 4 v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p~~~v~V~i~e~~~ 48 (64)
T PRK01964 4 VQIQLLEGRPEEKIKNLIREVTEAISATLDVPKERVRVIVNEVPS 48 (64)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEcCh
Confidence 45666667899999999999999998876521 477777766643
No 47
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=36.90 E-value=1.2e+02 Score=20.80 Aligned_cols=27 Identities=7% Similarity=0.118 Sum_probs=22.7
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHH
Q 033140 20 LYLDVHIVVDPFSSVSAAHGVGENVRH 46 (126)
Q Consensus 20 ~~VdlhI~Vd~~lsv~eAH~I~~~IE~ 46 (126)
+.|.+++.+|++++..++.++..+=+.
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~a~E~~ 29 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLKAREKA 29 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998765333
No 48
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the N-terminal domain of S-adenosylmethionine synthetase and is found in association with PF02772 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3RV2_A 3TDE_B 3S82_B 3IML_B 2P02_A 2OBV_A 1QM4_B 1O9T_B 1O93_A 1O92_B ....
Probab=36.70 E-value=75 Score=22.24 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCCCcccccCccccccCCCCcccCchhhHHHHHHHhhh
Q 033140 33 SVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLST 106 (126)
Q Consensus 33 sv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~ 106 (126)
+=+=|.+|++.|=+.+.+.-|+ ++|-+.+--... ..-+-|+. .....-|++.+||++|..
T Consensus 15 PDKicDqISDailD~~l~~dp~-arVA~E~~~~~~--------~v~i~GEi-----~~~~~vd~~~ivR~~i~~ 74 (100)
T PF00438_consen 15 PDKICDQISDAILDACLKQDPN-ARVACETLVSTG--------MVIIAGEI-----TSRAYVDIEKIVREVIKD 74 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT--EEEEEEEEETT--------EEEEEEEE-----ESSHHHTHHHHHHHHHHH
T ss_pred chhhhceeeeccchHHHhcCCC-CeEEEEEEeecc--------EEEEEEEe-----ccchhhhHHHHHHHHHHH
Confidence 3345778888888888888886 677665444332 12344444 333567899999999876
No 49
>cd02411 archeal_30S_S3_KH K homology RNA-binding domain (KH) of the archaeal 30S small ribosomal subunit S3 protein. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=36.59 E-value=1e+02 Score=20.27 Aligned_cols=56 Identities=5% Similarity=0.004 Sum_probs=37.6
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEec
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP 64 (126)
++..+.+.+.+..+.+.++..-|+- =+...-.-.++++..|++.++ ..++.|.+.+
T Consensus 27 gIs~IeI~r~~~~i~V~I~t~~pg~-iIGk~G~~I~~l~~~l~k~~~-~~~v~I~v~e 82 (85)
T cd02411 27 GYGGMEILRTPLGTQITIYAERPGM-VIGRGGKNIRELTEILETKFG-LENPQIDVQE 82 (85)
T ss_pred cccEEEEEEcCCcEEEEEEECCCCc-eECCCchhHHHHHHHHHHHhC-CCCceEEEEE
Confidence 5677888888888999999965554 444444444678888877665 3456666544
No 50
>PF00368 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A reductase; InterPro: IPR002202 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) [, ]. Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds []. The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids []. Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA []. Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I).; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050662 coenzyme binding, 0015936 coenzyme A metabolic process, 0055114 oxidation-reduction process; PDB: 2Q6B_C 2Q6C_D 1HWI_C 1HWJ_C 3CD5_B 2R4F_C 1HWL_B 1HWK_C 1DQA_B 3CCT_D ....
Probab=36.33 E-value=2.7e+02 Score=23.72 Aligned_cols=55 Identities=16% Similarity=0.101 Sum_probs=45.3
Q ss_pred ceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEE
Q 033140 6 QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFI 60 (126)
Q Consensus 6 ~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~I 60 (126)
-++.+|..+-.|+.+++.+++....-|-.--.-..++.+-..|.+.+|......|
T Consensus 139 ggl~~i~~~~~g~~v~l~~~~dtgDAMGaNmvn~~~e~v~~~i~~~~~~~~~~~I 193 (373)
T PF00368_consen 139 GGLRDIEVRIVGRFVHLRFHYDTGDAMGANMVNTATEAVCPWIEEQFGGMVLMSI 193 (373)
T ss_dssp EEEEEEEEEECSTEEEEEEEEEETTC--HHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred eeeeEEEEEecCCEEEEEEEEEccccchhhHHHHHHHHHHHHHHHhcccceEEee
Confidence 3577888888899999999999999999999999999999999998986444444
No 51
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=36.21 E-value=1.1e+02 Score=24.92 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhCCCeeEEEEEEe-----cCCCCCCCCcccccCccccccCCCCcccCchhhHHHHHHHhhhcCCccc
Q 033140 38 HGVGENVRHQIHKSHPEVSEVFIHID-----PAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVA 112 (126)
Q Consensus 38 H~I~~~IE~~I~~~~p~v~~V~IHie-----P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~ 112 (126)
..+.+++++.|.+ .++|.++.||+- +...+..|.+.--|..- .+..+...-.++|...|.+-+...-+|+.
T Consensus 108 ~~~eQ~le~tLs~-mDGVi~ArV~I~lp~~~~~g~~~~P~saSVfIky---~~~~nl~~~v~~IK~LV~nSv~gL~YenI 183 (246)
T COG4669 108 YAKEQQLEQTLSK-MDGVISARVHISLPEDDDEGKNALPSSASVFIKY---SPDVNLSIYVSQIKRLVANSVPGLQYENI 183 (246)
T ss_pred HHHHHHHHHHHHh-cCceEEEEEEEEcCCCCccCCCCCCceeEEEEEe---cCCCChhHhHHHHHHHHHhccCCCchhce
Confidence 3567788888864 677888888875 33334444443322211 13445556666777777666655544544
Q ss_pred ch
Q 033140 113 NR 114 (126)
Q Consensus 113 ~~ 114 (126)
||
T Consensus 184 SV 185 (246)
T COG4669 184 SV 185 (246)
T ss_pred EE
Confidence 44
No 52
>KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair]
Probab=36.05 E-value=1.6e+02 Score=29.38 Aligned_cols=81 Identities=14% Similarity=0.287 Sum_probs=54.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCC---------------CCCcccccCccccccCCCC
Q 033140 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF---------------SPSTMDQLGLEGCKAHSSN 88 (126)
Q Consensus 24 lhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~---------------~~~~~~~~~~~~~~~~~~~ 88 (126)
+-+.+++. |++||-.|+.+|.+++.+..|. =|++-+|-...|. ++|..--|+-.|.|+--++
T Consensus 1139 mFVlL~Ga-T~eeAF~IGq~iAe~VT~~NP~--PV~LKfEKVY~PCvL~tKKRYVG~~YEs~~Qk~PiFDAKGIETVRRD 1215 (1488)
T KOG0968|consen 1139 MFVLLPGA-TVEEAFEIGQEIAEAVTNSNPK--PVVLKFEKVYHPCVLLTKKRYVGFMYESPNQKEPIFDAKGIETVRRD 1215 (1488)
T ss_pred eEEEecCc-cHHHHHHHHHHHHHHHHhcCCC--CeEEEeeeecccceeeeccceeeeeeccCcccCCccccccceeeecc
Confidence 45666666 9999999999999999999994 5778777544321 2244456777888876666
Q ss_pred cccCc-hhhHHHHHHHhhhc
Q 033140 89 ICVDD-LDIDAVVYNTLSTK 107 (126)
Q Consensus 89 ~~~~~-~~~e~~v~~~~~~~ 107 (126)
.||-+ +-+|.-++=.++++
T Consensus 1216 tcPavakilEksL~LlFetk 1235 (1488)
T KOG0968|consen 1216 TCPAVAKILEKSLRLLFETK 1235 (1488)
T ss_pred CcHHHHHHHHHHHHHHhhcc
Confidence 55544 33455555555543
No 53
>PRK14638 hypothetical protein; Provisional
Probab=33.59 E-value=2e+02 Score=21.24 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=36.5
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCC-CCHHHHHHHHHHHHHHHHhh
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPF-SSVSAAHGVGENVRHQIHKS 51 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~-lsv~eAH~I~~~IE~~I~~~ 51 (126)
.+-++...+.|....+.+.|.=+.. +|+.++..++..|...|-..
T Consensus 24 elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~ 69 (150)
T PRK14638 24 EIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDRE 69 (150)
T ss_pred EEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccc
Confidence 4567777888888888888877655 99999999999998888643
No 54
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=33.21 E-value=1e+02 Score=17.96 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=33.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEecCCC
Q 033140 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAYF 67 (126)
Q Consensus 24 lhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~-v~~V~IHieP~~~ 67 (126)
++|.+.+..|.++-.++++.|-+.+.+.++- -.+++|.++....
T Consensus 3 i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~ 47 (58)
T cd00491 3 VQIYILEGRTDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPK 47 (58)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCc
Confidence 4566666779999999999999999887621 2577777766543
No 55
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=32.68 E-value=84 Score=25.17 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=27.5
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 033140 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (126)
Q Consensus 20 ~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~ 50 (126)
-++=+|-.++|.+++.+|...+.+||..|+.
T Consensus 113 ~~l~vHAGi~p~w~~~~~~~~a~eve~~l~~ 143 (257)
T cd07422 113 GILMVHAGIPPQWSIEQALKLAREVEAALRG 143 (257)
T ss_pred cEEEEccCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 3456799999999999999999999999974
No 56
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.65 E-value=1.3e+02 Score=18.73 Aligned_cols=30 Identities=7% Similarity=-0.018 Sum_probs=23.9
Q ss_pred ceeeeEEEEeeCCEEEEEEEEEECCCCCHH
Q 033140 6 QGCHRLRGRRAGSSLYLDVHIVVDPFSSVS 35 (126)
Q Consensus 6 ~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~ 35 (126)
.++.+++.+..+..+.+.+.+.+|++.++.
T Consensus 25 ~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~ 54 (75)
T cd04870 25 VRILDVGQAVIHGRLSLGILVQIPDSADSE 54 (75)
T ss_pred CCEEecccEEEcCeeEEEEEEEcCCCCCHH
Confidence 367788888888888888999999886653
No 57
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=31.47 E-value=2.2e+02 Score=27.72 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=33.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE
Q 033140 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62 (126)
Q Consensus 24 lhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHi 62 (126)
......|+.|++++-+....+++.++ ++|.+.+|.-..
T Consensus 562 ~~~~~~Pg~Sl~~~~~m~~~~e~~ik-~~PeV~~V~~k~ 599 (1027)
T COG3696 562 YMPLTIPGVSLDEALRMLQAIERAIK-KFPEVERVFGKT 599 (1027)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHHHh-cCcchheeeecc
Confidence 45677899999999999999999998 799998887654
No 58
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.26 E-value=1.4e+02 Score=18.53 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=25.7
Q ss_pred ceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 033140 6 QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (126)
Q Consensus 6 ~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~ 50 (126)
.+|+.-++...|....+|.-...+++-+.....+..+++++.|.+
T Consensus 27 l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 27 LNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred CCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 367777887776666667555556553322222334556666654
No 59
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=30.19 E-value=1.8e+02 Score=27.91 Aligned_cols=44 Identities=11% Similarity=0.003 Sum_probs=35.7
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh-CCCeeEEEEEE
Q 033140 19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS-HPEVSEVFIHI 62 (126)
Q Consensus 19 ~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~-~p~v~~V~IHi 62 (126)
.-.+.+++++|++.++++..++..++|+.++++ .|.+..+...+
T Consensus 569 ~~~~~v~v~~p~gt~l~~t~~~~~~ve~~l~~~~~~~v~~~~~~~ 613 (1049)
T PRK15127 569 QGVFLTMVQLPAGATQERTQKVLNEVTDYYLTKEKNNVESVFAVN 613 (1049)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCeeEEEEEe
Confidence 346678999999999999999999999999753 57777665443
No 60
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=30.12 E-value=1.8e+02 Score=27.82 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=36.9
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh-CCCeeEEEEEEe
Q 033140 19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS-HPEVSEVFIHID 63 (126)
Q Consensus 19 ~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~-~p~v~~V~IHie 63 (126)
.-.+.+++++|++.++++..+.+.++|+.|++. .|.+..+...+-
T Consensus 568 ~~~~~v~~~~p~gt~l~~t~~~~~~~e~~l~~~~~~~v~~~~~~~G 613 (1037)
T PRK10555 568 RGMFTTSVQLPSGSTQQQTLKVVEKVEKYYFTHEKDNVMSVFATVG 613 (1037)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEec
Confidence 345678999999999999999999999999763 588877766553
No 61
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=29.97 E-value=75 Score=24.48 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=31.7
Q ss_pred EEEeeCCE-EEEEEEEEECCCCC---HHHHHHHHHHHHHH----HHhhCCCeeEEEEEEecCCCC
Q 033140 12 RGRRAGSS-LYLDVHIVVDPFSS---VSAAHGVGENVRHQ----IHKSHPEVSEVFIHIDPAYFQ 68 (126)
Q Consensus 12 R~R~~G~~-~~VdlhI~Vd~~ls---v~eAH~I~~~IE~~----I~~~~p~v~~V~IHieP~~~~ 68 (126)
+++..|.. +.++ +...++ ..+++++.+.+++. |.+-.|....++|+++|....
T Consensus 2 ~i~~~Gd~allv~----~~~~~~~~~~~~v~~l~~~l~~~~~~gi~e~vp~~~sllv~fdp~~~~ 62 (201)
T smart00796 2 RIRPAGDRALLVE----FGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDPLVID 62 (201)
T ss_pred EEEEcCCcEEEEE----ECCcCCHHHHHHHHHHHHHHHhcCCCCeEEccccceEEEEEEcCCCCC
Confidence 56677774 4444 455554 34555666666543 444556556788999987543
No 62
>cd00580 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.
Probab=29.73 E-value=1.9e+02 Score=19.81 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=33.5
Q ss_pred CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCe
Q 033140 18 SSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV 55 (126)
Q Consensus 18 ~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v 55 (126)
+.-||-++|.+-++-|.++-..+.+.|-+.|.+.++..
T Consensus 57 ~~~fi~i~i~l~~GRs~eqK~~l~~~i~~~l~~~~~~~ 94 (113)
T cd00580 57 DDAFIHVTLRILAGRSEEQKQELSEALLAALRAHLAPV 94 (113)
T ss_pred CCcEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 35788888888888999999999999999999998865
No 63
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=29.67 E-value=1.3e+02 Score=17.90 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=33.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEecCC
Q 033140 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAY 66 (126)
Q Consensus 24 lhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~-v~~V~IHieP~~ 66 (126)
++|.+-++.|.++-.++...|-+.+.+.++- ..+++|-+....
T Consensus 4 i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~ 47 (61)
T PRK02220 4 VHIKLIEGRTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINEMS 47 (61)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEeC
Confidence 4667777789999999999999999888763 257777666554
No 64
>PRK04191 rps3p 30S ribosomal protein S3P; Reviewed
Probab=29.54 E-value=1.5e+02 Score=23.08 Aligned_cols=62 Identities=5% Similarity=-0.066 Sum_probs=42.5
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCC
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFS 70 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~~ 70 (126)
++..+.+++.+..+.+.++..-| .+=+.....-.++++..|++.+. +.++.|.+.+...|..
T Consensus 29 gIs~IeI~Rt~~~i~I~I~ta~P-GivIGk~G~~I~klk~~Lkk~~~-~~~v~I~v~ev~~p~~ 90 (207)
T PRK04191 29 GYGGMEIKKTPLGTRITIYAERP-GMVIGRGGKNIRELTEILEKKFG-LENPQIDVKEVENPEL 90 (207)
T ss_pred ceeEEEEEEcCCcEEEEEEECCC-CeEECCCchhHHHHHHHHHHHhC-CCceeEEEEEEeCCCc
Confidence 56777888887788888888554 44444444445777777776664 4567788877776654
No 65
>PRK09577 multidrug efflux protein; Reviewed
Probab=29.52 E-value=1.4e+02 Score=28.41 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=34.5
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEE
Q 033140 19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFI 60 (126)
Q Consensus 19 ~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~I 60 (126)
.-.+-+.+++|++.++++..++..++|+.|++ .|.+..+..
T Consensus 566 ~~~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~-~~~v~~~~~ 606 (1032)
T PRK09577 566 QGNFMVMVIRPQGTPLAETMQSVREVESYLRR-HEPVAYTFA 606 (1032)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHHHHHhh-CCCceEEEE
Confidence 34567889999999999999999999999975 688876654
No 66
>COG0483 SuhB Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]
Probab=29.01 E-value=1.5e+02 Score=23.53 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCCCcccccCccccccCCCCcccCchhhHHHHHHHhhhcCCc
Q 033140 34 VSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110 (126)
Q Consensus 34 v~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~ 110 (126)
+..+.+++.++.+.+...|.....+.+ +.... ..+-++.-+..+|..+++.|.++||+
T Consensus 5 ~~~~~~~a~~a~~~i~~~f~~~~~~~~--~~k~~-----------------~~d~VT~aD~~aE~~i~~~l~~~~P~ 62 (260)
T COG0483 5 LNIALRAARKAGALILPLFRELDAVEV--EVKKS-----------------DGDPVTEADKAAERIIRARLRAAFPD 62 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccee--eecCC-----------------CCCcccHHHHHHHHHHHHHHHHHCCC
Confidence 345666888888888888876433222 11110 12225566778999999999999998
No 67
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=28.35 E-value=1.6e+02 Score=22.66 Aligned_cols=79 Identities=8% Similarity=0.049 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC-CCCCCcccccCccccccCCCCcccCchhhHHHHHHHhhhcCCcccch
Q 033140 36 AAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF-QFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVANR 114 (126)
Q Consensus 36 eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~ 114 (126)
.-..+..++++.|. .+++|..+.||+-.-.. .+....+.+ .-+=.-......... .++++|.+ .+.+..|. ++-
T Consensus 112 ~~~ale~eL~~tI~-~i~gV~~A~V~l~~Pe~~~f~~~~~~~-sASV~l~~~~g~~l~-~qv~~I~~-LVa~sV~g-L~~ 186 (206)
T PF01514_consen 112 YQRALEGELERTIE-SIDGVESARVHLVLPERSVFGENQQPP-SASVVLKLKPGSELS-EQVQGIQN-LVASSVPG-LKP 186 (206)
T ss_dssp HHHHHHHHHHHHHT-TSTTEEEEEEEEEE----BTTB----E-EEEEEEEE-TTS--G-GGHHHHHH-HHHHHSTT---G
T ss_pred HHHHHHHHHHHHHH-cCCCeeEEEEEEecCCccccccCCCCC-eEEEEEEECCCCChH-HHHHHHHH-HHHHhcCC-CCc
Confidence 34567788888885 58889999999854433 221111110 000001122234444 77887654 44444654 666
Q ss_pred hhhhh
Q 033140 115 DLWAT 119 (126)
Q Consensus 115 ~~~~~ 119 (126)
|.|++
T Consensus 187 enVtV 191 (206)
T PF01514_consen 187 ENVTV 191 (206)
T ss_dssp GGEEE
T ss_pred ccEEE
Confidence 77665
No 68
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=28.00 E-value=2.1e+02 Score=27.41 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=36.1
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE
Q 033140 19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62 (126)
Q Consensus 19 ~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHi 62 (126)
.-.+.+.++.+++.++++..++..++|+.|++ .|++..+..-+
T Consensus 567 ~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~-~~~v~~~~~~~ 609 (1040)
T PRK10503 567 NGIIQGTLQAPQSSSFANMAQRQRQVADVILQ-DPAVQSLTSFV 609 (1040)
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHHHHHHHhh-CCCeEEEEEEe
Confidence 44567899999999999999999999999975 68887776554
No 69
>PF10646 Germane: Sporulation and spore germination; InterPro: IPR019606 The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. It is also found in lipoprotein LpqB. The domain is present in a number of different bacterial species both alone and in association with other domains such as Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.
Probab=27.75 E-value=1.5e+02 Score=19.82 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=35.2
Q ss_pred CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 033140 17 GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (126)
Q Consensus 17 G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHie 63 (126)
|+.++|++.=.+-..+.......+...|...+.+.++++..|.|-++
T Consensus 63 ~~~~~Vd~s~~~~~~~~~~~~~~~~~~i~~Tl~~~~~~v~~V~i~vd 109 (117)
T PF10646_consen 63 GNTLTVDFSSEFLNFLGSSQEALLLAQIVNTLTEQFPGVKKVQILVD 109 (117)
T ss_pred CCEEEEECCHHHhhcCChHHHHHHHHHHHHHHHHhcCCccEEEEEEC
Confidence 44666666655554456777778888999999888998988888665
No 70
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=27.57 E-value=79 Score=20.13 Aligned_cols=22 Identities=9% Similarity=-0.083 Sum_probs=19.1
Q ss_pred EECCCCCHHHHHHHHHHHHHHH
Q 033140 27 VVDPFSSVSAAHGVGENVRHQI 48 (126)
Q Consensus 27 ~Vd~~lsv~eAH~I~~~IE~~I 48 (126)
.+++++|-.+|...+++++++.
T Consensus 34 ~~~~~LtkaeAs~rId~L~~~~ 55 (57)
T PF11272_consen 34 PFPDDLTKAEASERIDELQAQT 55 (57)
T ss_pred CCCCcccHHHHHHHHHHHHHHh
Confidence 4789999999999999988764
No 71
>PRK10931 adenosine-3'(2'),5'-bisphosphate nucleotidase; Provisional
Probab=26.64 E-value=1.5e+02 Score=22.91 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCCCcccccCccccccCCCCcccCchhhHHHHHHHhhhcCCc
Q 033140 34 VSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110 (126)
Q Consensus 34 v~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~ 110 (126)
+..|.+++.+.-+.+++.+.....+.+..... .+-+..-+..+|..+++.|++.||+
T Consensus 2 l~~a~~~a~~ag~~i~~~~~~~~~~~~~~k~~--------------------~d~vT~aD~~~e~~i~~~L~~~~P~ 58 (246)
T PRK10931 2 LEQICQLARNAGDAIMQVYDGTKPLDVASKAD--------------------DSPVTAADIAAHTVIKDGLRTLTPD 58 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcceEEcCC--------------------CCcccHHHHHHHHHHHHHHHHHCCC
Confidence 45677788888887777665321222211110 1225555677999999999999998
No 72
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=26.63 E-value=2.9e+02 Score=20.97 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=32.6
Q ss_pred eeeEEEEee---CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 033140 8 CHRLRGRRA---GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (126)
Q Consensus 8 Vh~LR~R~~---G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHie 63 (126)
|+++.+... |..+.+++.+..+.- .....+.+.++++|.. +|++.+|.|.+.
T Consensus 100 V~~I~Id~~~~~~~~V~I~mtLt~p~c---~~~~~L~~dV~~aL~~-l~gV~~V~V~l~ 154 (174)
T TIGR03406 100 VYGCRVEKLGEGQFRVDIEMTLTAPGC---GMGPVLVEDVEDKVLA-VPNVDEVEVELV 154 (174)
T ss_pred eEEEEEecccCCCCEEEEEEEeCCCCC---cHHHHHHHHHHHHHHh-CCCceeEEEEEE
Confidence 455555541 225666666655543 4577788899999964 677777666553
No 73
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=26.62 E-value=2e+02 Score=19.10 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=18.0
Q ss_pred EEEEeeCCEEEEEEEEEECCCCCHHHHH
Q 033140 11 LRGRRAGSSLYLDVHIVVDPFSSVSAAH 38 (126)
Q Consensus 11 LR~R~~G~~~~VdlhI~Vd~~lsv~eAH 38 (126)
|.++.... ...++.+++++++|+.+..
T Consensus 4 l~IK~~~~-~~~~~~ve~~~~~TV~~lK 30 (79)
T cd01790 4 LLIKSPNQ-KYEDQTVSCFLNWTVGELK 30 (79)
T ss_pred EEEECCCC-CeEEEEEecCCcChHHHHH
Confidence 44555433 2567778899999987655
No 74
>PRK05783 hypothetical protein; Provisional
Probab=25.06 E-value=2.2e+02 Score=19.17 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=27.5
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEec
Q 033140 26 IVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64 (126)
Q Consensus 26 I~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP 64 (126)
+.++++ +-++|.+.++++-++|+-.-|.|.+..|.+++
T Consensus 46 l~l~~~-~~e~a~~~v~~mc~~LrLaNpVIe~y~i~~~~ 83 (84)
T PRK05783 46 FKIEAN-SPEEAKELALKIAREGRLYNPIVHKIVVRVRR 83 (84)
T ss_pred EEEcCC-CHHHHHHHHHHHHHhcCcCCceeEEEEEEEEe
Confidence 444555 77889999999988884457877777776554
No 75
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=24.24 E-value=75 Score=27.86 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=39.9
Q ss_pred ceeeeEEEEeeCC-EEEEEEEEEECCCCCHH----------------------HH--------H-------HHHHHHHHH
Q 033140 6 QGCHRLRGRRAGS-SLYLDVHIVVDPFSSVS----------------------AA--------H-------GVGENVRHQ 47 (126)
Q Consensus 6 ~~Vh~LR~R~~G~-~~~VdlhI~Vd~~lsv~----------------------eA--------H-------~I~~~IE~~ 47 (126)
.+++|++.-..|+ .+-....|.+++.+-.. +. . .-.+++|+.
T Consensus 408 ~diyDvK~~diG~g~vRfKAE~DFdGr~vtrsYL~kqd~akml~e~~~~~~~e~le~fml~~GEnivd~lG~EvDRlEke 487 (503)
T KOG2802|consen 408 NDIYDVKATDIGLGKVRFKAEVDFDGRVVTRSYLEKQDFAKMLQEIQEVKTPEELETFMLKHGENIVDTLGAEVDRLEKE 487 (503)
T ss_pred HhhhhccceeeccceeEEEEEeccCchhhHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHcchHHHHHhhhHHHHHHHH
Confidence 3578888888887 56667777777654321 11 1 126899999
Q ss_pred HHhhCCCeeEEEEEE
Q 033140 48 IHKSHPEVSEVFIHI 62 (126)
Q Consensus 48 I~~~~p~v~~V~IHi 62 (126)
|++.+|+|.+|.+.+
T Consensus 488 l~~~~PeirHVDlEi 502 (503)
T KOG2802|consen 488 LKKRNPEIRHVDLEI 502 (503)
T ss_pred HHHhCCCceeeeeec
Confidence 999999999887653
No 76
>TIGR01008 rpsC_E_A ribosomal protein S3, eukaryotic/archaeal type. This model describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea. TIGRFAMs model TIGR01009 describes the bacterial/organellar type, although the organellar types have a different architecture with long insertions and may score poorly.
Probab=24.17 E-value=2.2e+02 Score=22.12 Aligned_cols=62 Identities=6% Similarity=-0.070 Sum_probs=42.1
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCC
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFS 70 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~~ 70 (126)
++.++.+++....+.|.+|..-|+-+- ...-.-.+++...|.+.++. ..+.|.+.+...|..
T Consensus 27 gis~ieI~r~~~~~~I~I~~~rPg~vI-G~~g~~i~~l~~~l~k~~~~-~~~~I~v~ev~~p~l 88 (195)
T TIGR01008 27 GYSGVDVRVTPLGTKVIIFAERPGLVI-GRGGRRIRELTEKLQKKFGL-ENPQIDVEEVENPEL 88 (195)
T ss_pred CeeEEEEEEcCCcEEEEEEECCCceEE-CCCchHHHHHHHHHHHHhCC-CceEEEEEEEeCCCc
Confidence 677888999888899999988877543 33333335667777666552 356777777766543
No 77
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=23.54 E-value=78 Score=28.00 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhh
Q 033140 29 DPFSSVSAAHGVGENVRHQIHKS 51 (126)
Q Consensus 29 d~~lsv~eAH~I~~~IE~~I~~~ 51 (126)
+.+++..+|+.||.+||+.|+++
T Consensus 105 ~aG~~~~~Ay~iA~~Ve~~Lr~~ 127 (475)
T PRK12337 105 DAGFSPREAYELASAVELRLRQE 127 (475)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHc
Confidence 56789999999999999999874
No 78
>PRK14645 hypothetical protein; Provisional
Probab=23.34 E-value=3.2e+02 Score=20.30 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=35.4
Q ss_pred eeeeEEEEeeCCEEEEEEEEEEC--CCCCHHHHHHHHHHHHHHHHhh
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVD--PFSSVSAAHGVGENVRHQIHKS 51 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd--~~lsv~eAH~I~~~IE~~I~~~ 51 (126)
.+.++...+.|+...+.+.|.=+ ..+++.+.-+++..|...|-..
T Consensus 25 elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~ 71 (154)
T PRK14645 25 EVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRL 71 (154)
T ss_pred EEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccc
Confidence 46778888888877777777653 3499999999999998888643
No 79
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=23.16 E-value=3.7e+02 Score=24.80 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=41.6
Q ss_pred eeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE
Q 033140 15 RAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62 (126)
Q Consensus 15 ~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHi 62 (126)
+....++=++.|.+|.++|.++--+++.+.-+......+.+.++-||-
T Consensus 79 r~na~~are~~iaLP~El~~~~~~~L~~~f~~~~~~~~g~~~d~aiH~ 126 (744)
T TIGR02768 79 RKDAQLAREFEIALPRELNLEQNIELARRFVRDHFVEKGMVADWAIHD 126 (744)
T ss_pred CCCCeeEEeEeEeCchhcCHHHHHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 345688889999999999999999999998777777788789999996
No 80
>PRK14633 hypothetical protein; Provisional
Probab=23.00 E-value=3.1e+02 Score=20.11 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=34.2
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS 51 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~ 51 (126)
.+-++.....|. ..+.+.|.-+.++|+.++-.++..|...|-..
T Consensus 20 eL~dve~~~~~~-~~lrV~ID~~~Gv~lddC~~vSr~i~~~LD~~ 63 (150)
T PRK14633 20 ILWGIEVVGSGK-LTIRIFIDHENGVSVDDCQIVSKEISAVFDVE 63 (150)
T ss_pred EEEEEEEEeCCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHhccC
Confidence 345666666666 57777777788999999999999999988644
No 81
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=22.61 E-value=2.9e+02 Score=21.10 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=27.7
Q ss_pred ceeeeEEEEeeCC------EEEEEEEEEECCCCCHHHHHHHHHHH
Q 033140 6 QGCHRLRGRRAGS------SLYLDVHIVVDPFSSVSAAHGVGENV 44 (126)
Q Consensus 6 ~~Vh~LR~R~~G~------~~~VdlhI~Vd~~lsv~eAH~I~~~I 44 (126)
.++.+|+++.+|. .+.+.+.+.+|++..+.+..+--+.+
T Consensus 121 iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l 165 (190)
T PRK11589 121 MNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKAL 165 (190)
T ss_pred CChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567788886652 68899999999998876554443333
No 82
>cd02637 R3H_PARN R3H domain of Poly(A)-specific ribonuclease (PARN). PARN is a poly(A)-specific 3' exonuclease from the RNase D family that, in Xenopus, deadenylates a specific class of maternal mRNAs which results in their translational repression. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=22.58 E-value=46 Score=21.35 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.7
Q ss_pred hHHHHHHHhhhcCCcccchhhhhh
Q 033140 96 IDAVVYNTLSTKFPEVANRDLWAT 119 (126)
Q Consensus 96 ~e~~v~~~~~~~~~~~~~~~~~~~ 119 (126)
....+.+.|.++||++..|+.++.
T Consensus 28 ~RkLiyq~l~~~~~~~I~ve~~~~ 51 (65)
T cd02637 28 QRKLIYQTLEQKYPKGIHVETLET 51 (65)
T ss_pred HHHHHHHHHHHHccccceeeeeec
Confidence 567899999999999999988754
No 83
>COG3052 CitD Citrate lyase, gamma subunit [Energy production and conversion]
Probab=22.56 E-value=64 Score=22.58 Aligned_cols=36 Identities=31% Similarity=0.286 Sum_probs=24.4
Q ss_pred eEEEEEEecCCCCCCCC-----cccccCccccccCCCCcccCchhhHHHHHHHhhh
Q 033140 56 SEVFIHIDPAYFQFSPS-----TMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLST 106 (126)
Q Consensus 56 ~~V~IHieP~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~ 106 (126)
.|+.|.+.|.+.+.-.. -+..|+ ..||++|+++|-.
T Consensus 15 SDvmIri~P~~~~gI~i~i~SsV~kQFG---------------~~I~~tV~~~La~ 55 (98)
T COG3052 15 SDVMIRIAPLDTQGIDLQINSSVEKQFG---------------DAIRQTVLEVLAR 55 (98)
T ss_pred cceEEEEccCCCCCeEEEeehHHHHHHH---------------HHHHHHHHHHHHH
Confidence 58999999998754321 111222 4699999999865
No 84
>PRK05934 type III secretion system protein; Validated
Probab=22.11 E-value=3.1e+02 Score=23.38 Aligned_cols=81 Identities=6% Similarity=0.023 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCCCcccccCccccccCCCCcccCchhhHHHHHHHhhhcCCccc
Q 033140 33 SVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEVA 112 (126)
Q Consensus 33 sv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~ 112 (126)
-.-|+-++-.++++.|. .++.|..+.||+-.-..........+ ++ .-+-........++|++|+.=+=+| -|. +
T Consensus 65 r~~E~~ALEGELaRTIe-sld~VesARVHLAlPe~s~~~~~pTA-SV--vLtL~~G~tLs~~QV~gIvnLVAsS-VpG-L 138 (341)
T PRK05934 65 KLIESLAKKEQLEKDLT-MFHPVAQATVALSLETEDDPMSPAEI-SV--ILSLPKAETLSPSLLHSITDYLTSS-VPG-L 138 (341)
T ss_pred HHHHHHHHHHHHHHHHH-cccCcceeEEEEeCCCCCccCCCCce-EE--EEecCCCCcCCHHHHHHHHHHHHhc-CCC-C
Confidence 45678889999999995 57889999999864443211011111 11 1111222445678899877554444 544 6
Q ss_pred chhhhhh
Q 033140 113 NRDLWAT 119 (126)
Q Consensus 113 ~~~~~~~ 119 (126)
+.|.||+
T Consensus 139 tpEnVTV 145 (341)
T PRK05934 139 TKEHITL 145 (341)
T ss_pred CccCeEE
Confidence 6666654
No 85
>PRK10757 inositol monophosphatase; Provisional
Probab=21.95 E-value=2.2e+02 Score=22.32 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCCCcccccCccccccCCCCcccCchhhHHHHHHHhhhcCCc
Q 033140 34 VSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPE 110 (126)
Q Consensus 34 v~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~~ 110 (126)
+.-|.+++.+..+.+++.+.....+.+ +... .++-+..-+..+|..+++.|..+||+
T Consensus 5 l~~a~~~a~~ag~~i~~~~~~~~~~~~--~~k~------------------~~d~VT~aD~~~e~~i~~~L~~~~P~ 61 (267)
T PRK10757 5 LNIAVRAARKAGNLIAKNYETPDAVEA--SQKG------------------SNDFVTNVDKAAEAVIIDTIRKSYPQ 61 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhccccceee--eecC------------------CCCchhHHHHHHHHHHHHHHHHHCCC
Confidence 345778888888888887764222222 1110 01124555667999999999999998
No 86
>PF06385 Baculo_LEF-11: Baculovirus LEF-11 protein; InterPro: IPR009429 This family consists of several Baculovirus LEF-11 proteins. The exact function of this family is unknown although it has been shown that LEF-11 is required for viral DNA replication during the infection cycle [] and plays a role in late/very late gene activation.; GO: 0006355 regulation of transcription, DNA-dependent, 0019058 viral infectious cycle
Probab=21.03 E-value=85 Score=21.84 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=26.1
Q ss_pred ccCchhhHHHHHHHhhhcCCcccchhhhhhhhccc
Q 033140 90 CVDDLDIDAVVYNTLSTKFPEVANRDLWATHSLAF 124 (126)
Q Consensus 90 ~~~~~~~e~~v~~~~~~~~~~~~~~~~~~~h~~~~ 124 (126)
|...++|=++||++|+.+=. -.-++.|+-|....
T Consensus 1 cLTRSevYAlvrE~IN~~K~-~~d~~nV~aHv~~~ 34 (94)
T PF06385_consen 1 CLTRSEVYALVREVINKRKH-TNDTENVCAHVEDP 34 (94)
T ss_pred CCcHHHHHHHHHHHHHHhhc-cCcchhHHHHhccc
Confidence 34567899999999998622 57788899998764
No 87
>PRK14632 hypothetical protein; Provisional
Probab=20.37 E-value=3.8e+02 Score=20.16 Aligned_cols=44 Identities=7% Similarity=0.010 Sum_probs=33.9
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS 51 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~ 51 (126)
.+-++.... |....+.+.|.=+.++|+.++-.++..|...|-..
T Consensus 24 eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD~~ 67 (172)
T PRK14632 24 ELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVE 67 (172)
T ss_pred EEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 345566554 66677888887778899999999999998888643
Done!