Query 033140
Match_columns 126
No_of_seqs 187 out of 1091
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:55:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zzt_A Putative uncharacterize 99.7 1.1E-16 3.9E-21 110.9 9.9 66 2-67 22-87 (107)
2 3byp_A CZRB protein; membrane 99.7 4.5E-16 1.5E-20 104.5 10.6 63 3-66 25-87 (94)
3 3j1z_P YIIP, cation efflux fam 99.6 2.1E-15 7.1E-20 120.8 7.0 70 2-72 227-296 (306)
4 3h90_A Ferrous-iron efflux pum 99.5 9.2E-14 3.2E-18 109.5 10.7 65 2-67 218-282 (283)
5 1ghh_A DINI, DNA-damage-induci 82.1 2.6 8.9E-05 27.6 4.8 71 21-106 2-73 (81)
6 3ju0_A Phage integrase; four s 55.7 29 0.001 23.2 5.5 29 22-50 49-77 (108)
7 3lno_A Putative uncharacterize 55.1 22 0.00076 23.4 4.8 43 18-63 44-86 (108)
8 2ns6_A Mobilization protein A; 53.0 38 0.0013 24.8 6.2 47 17-63 67-113 (185)
9 1ib8_A Conserved protein SP14. 39.9 67 0.0023 22.9 5.7 43 7-49 27-69 (164)
10 3cq1_A Putative uncharacterize 38.9 41 0.0014 21.7 4.1 43 17-63 40-82 (103)
11 3jtz_A Integrase; four strande 38.5 76 0.0026 20.2 5.9 29 22-50 49-77 (88)
12 1mli_A Muconolactone isomerase 36.2 75 0.0026 21.2 5.0 48 20-69 3-50 (96)
13 4dx5_A Acriflavine resistance 35.7 2.4E+02 0.0083 25.2 9.9 43 20-62 570-613 (1057)
14 2x4k_A 4-oxalocrotonate tautom 33.4 64 0.0022 17.9 4.2 43 24-66 6-49 (63)
15 2lfp_A Bacteriophage SPP1 comp 29.8 93 0.0032 20.9 4.9 32 17-50 64-95 (139)
16 2kwa_A Kinase A inhibitor; bac 29.8 1.1E+02 0.0038 19.5 5.4 52 11-66 7-66 (101)
17 1j27_A Hypothetical protein TT 29.0 1.2E+02 0.0043 20.0 5.2 34 21-56 7-40 (102)
18 1uwd_A Hypothetical protein TM 28.3 80 0.0027 20.2 4.1 42 18-63 42-83 (103)
19 2r4f_A 3-hydroxy-3-methylgluta 28.1 2.1E+02 0.0073 23.9 7.5 50 6-55 195-244 (441)
20 3ne5_A Cation efflux system pr 26.6 3.2E+02 0.011 24.5 8.9 41 22-63 577-617 (1054)
21 1otf_A 4-oxalocrotonate tautom 26.1 91 0.0031 17.3 4.2 43 24-66 3-46 (62)
22 1th5_A NIFU1; iron-sulfur clus 24.4 67 0.0023 20.1 3.0 21 39-59 51-71 (74)
23 3e6q_A Putative 5-carboxymethy 22.6 2E+02 0.0068 20.0 7.6 47 19-65 80-130 (146)
24 3abf_A 4-oxalocrotonate tautom 22.3 1.1E+02 0.0039 17.1 5.4 44 24-67 4-48 (64)
25 2cg8_A Dihydroneopterin aldola 21.6 84 0.0029 24.2 3.7 50 16-65 24-100 (270)
26 1wh9_A 40S ribosomal protein S 21.6 70 0.0024 20.7 2.8 62 7-70 24-87 (92)
27 1dhn_A DHNA, 7,8-dihydroneopte 21.2 1.4E+02 0.0048 19.8 4.4 60 6-65 5-101 (121)
28 3mb2_A 4-oxalocrotonate tautom 21.1 1.4E+02 0.0047 17.6 4.7 42 25-66 5-47 (72)
29 3m21_A Probable tautomerase HP 20.9 1.3E+02 0.0045 17.3 5.2 43 24-66 3-49 (67)
30 2v50_A Multidrug resistance pr 20.3 2.7E+02 0.0091 25.1 7.1 40 21-61 571-612 (1052)
31 2i1s_A Hypothetical protein; m 20.1 1.4E+02 0.0048 21.3 4.5 38 5-42 5-42 (188)
No 1
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.70 E-value=1.1e-16 Score=110.93 Aligned_cols=66 Identities=29% Similarity=0.477 Sum_probs=62.4
Q ss_pred CCCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 033140 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (126)
Q Consensus 2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~ 67 (126)
+|||.+||+||+|++|+.+++++||.|++++|+.+||+|+++|++.|+++||.+.+++||+||...
T Consensus 22 ~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtIhvEp~~~ 87 (107)
T 2zzt_A 22 FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPLGN 87 (107)
T ss_dssp CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTC
T ss_pred CCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEEecCCC
Confidence 699999999999999999999999999999999999999999999999999988899999999764
No 2
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.67 E-value=4.5e-16 Score=104.45 Aligned_cols=63 Identities=27% Similarity=0.486 Sum_probs=60.5
Q ss_pred CCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 033140 3 LSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (126)
Q Consensus 3 pgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~ 66 (126)
|||.+||+||+|++|+.+++++||.|++++|+.++|+|+++|++.|+++||.+ +++||+||..
T Consensus 25 ~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~-~vtIh~ep~~ 87 (94)
T 3byp_A 25 GRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPEG 87 (94)
T ss_dssp TTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-EEEEEEEECC
T ss_pred CCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC-EEEEEeCCCC
Confidence 89999999999999999999999999999999999999999999999999975 9999999954
No 3
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=99.58 E-value=2.1e-15 Score=120.83 Aligned_cols=70 Identities=26% Similarity=0.488 Sum_probs=65.8
Q ss_pred CCCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCCC
Q 033140 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPS 72 (126)
Q Consensus 2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~~~~ 72 (126)
.|||.+||++|+|++|+.+++++||+||+++|+.++|+|++++|++|++++|. .+++||+||+..++.+|
T Consensus 227 ~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~-~~v~IhveP~~~ePt~~ 296 (306)
T 3j1z_P 227 DPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFED-AEVIIHQDPVQVEPTTQ 296 (306)
T ss_dssp STTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTT-CEEEECCEETTSCCCCC
T ss_pred CCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-CeEEEEeCCCCCCCCcc
Confidence 58999999999999999999999999999999999999999999999999994 79999999998776554
No 4
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=99.51 E-value=9.2e-14 Score=109.51 Aligned_cols=65 Identities=29% Similarity=0.544 Sum_probs=62.3
Q ss_pred CCCcceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 033140 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (126)
Q Consensus 2 vpgV~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~ 67 (126)
+|||.++|++|+|++|+.+++++||.+++++|+.++|+|++++|+.|++++|. .+++||+||+..
T Consensus 218 ~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v~ih~ep~~~ 282 (283)
T 3h90_A 218 WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCSV 282 (283)
T ss_dssp SSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEEEEEEECSCC
T ss_pred CCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeEEEEeccCCC
Confidence 58999999999999999999999999999999999999999999999999997 799999999864
No 5
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=82.13 E-value=2.6 Score=27.57 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=44.8
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCe-eEEEEEEecCCCCCCCCcccccCccccccCCCCcccCchhhHHH
Q 033140 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV-SEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAV 99 (126)
Q Consensus 21 ~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v-~~V~IHieP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 99 (126)
.|++.+.=...++-....+|..++.++|...||+. .+|.| -|... .++.+.|.. -.+.+.|+.+
T Consensus 2 rVEi~~dK~~~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~V--r~~s~-------n~lsV~g~~------k~dKe~i~ei 66 (81)
T 1ghh_A 2 RIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSV--RYAAA-------NNLSVIGAT------KEDKQRISEI 66 (81)
T ss_dssp EEEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEE--EEESS-------CEEEEESCC------HHHHHHHHHH
T ss_pred eEEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCceEEE--eecCC-------CceeecCCC------hhHHHHHHHH
Confidence 34555544456777888999999999999999974 25655 34432 233443332 1145567777
Q ss_pred HHHHhhh
Q 033140 100 VYNTLST 106 (126)
Q Consensus 100 v~~~~~~ 106 (126)
+.++..+
T Consensus 67 LqE~we~ 73 (81)
T 1ghh_A 67 LQETWES 73 (81)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 7777665
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=55.74 E-value=29 Score=23.20 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=24.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 033140 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (126)
Q Consensus 22 VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~ 50 (126)
-.+.|.--|.+|+++|-+.+.++...|.+
T Consensus 49 ~~~~LG~yp~~SLa~AR~~a~~~r~~l~~ 77 (108)
T 3ju0_A 49 RLLALGVYPAVSLADARQRRDEAKKLLAA 77 (108)
T ss_dssp EEEEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 34667778999999999999999998864
No 7
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=55.07 E-value=22 Score=23.43 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=31.6
Q ss_pred CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 033140 18 SSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (126)
Q Consensus 18 ~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHie 63 (126)
..+.|++.+..+.- ++ +..|...++++|+..+|++..|.|.+.
T Consensus 44 ~~V~V~ltlt~p~c-p~--~~~i~~~i~~al~~~l~Gv~~V~V~l~ 86 (108)
T 3lno_A 44 NNAVITMTMTSIGC-PM--AGQIVSDVKKVLSTNVPEVNEIEVNVV 86 (108)
T ss_dssp CCEEEEECCSCTTC-TT--HHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred CeEEEEEEECCCCC-cH--HHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 56777777766553 44 568999999999556888887777664
No 8
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=52.97 E-value=38 Score=24.80 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=41.5
Q ss_pred CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 033140 17 GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (126)
Q Consensus 17 G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHie 63 (126)
..++.=++.|.+|.++|.++-.+++...-+......+.+.++-||-+
T Consensus 67 na~lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~ 113 (185)
T 2ns6_A 67 NGRLFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAG 113 (185)
T ss_dssp TSCCEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEE
T ss_pred CCeEEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcC
Confidence 56788899999999999999999999998888777787789999973
No 9
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=39.89 E-value=67 Score=22.88 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=37.6
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIH 49 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~ 49 (126)
.+-++...+.|...++.+-|.=+..+++.++.+++..|...|-
T Consensus 27 eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD 69 (164)
T 1ib8_A 27 ELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLD 69 (164)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTT
T ss_pred EEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 4567778888999888888888899999999999999988886
No 10
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=38.92 E-value=41 Score=21.72 Aligned_cols=43 Identities=21% Similarity=0.399 Sum_probs=29.5
Q ss_pred CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 033140 17 GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (126)
Q Consensus 17 G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHie 63 (126)
|..+.+.+.+..+.- ++ +..|...++++|+ .+|++..|.|.+.
T Consensus 40 ~~~V~v~l~lt~~~c-p~--~~~l~~~i~~al~-~l~gv~~V~V~l~ 82 (103)
T 3cq1_A 40 PPRAYVRMTLTTPGC-PL--HDSLGEAVRQALS-RLPGVEEVEVEVT 82 (103)
T ss_dssp TTEEEEEECCSSSSC-CS--SCHHHHHHHHHHH-TSTTCCEEEEEEC
T ss_pred CCEEEEEEEECCCCC-cH--HHHHHHHHHHHHH-hCCCceeEEEEEe
Confidence 556666666654333 44 7789999999996 5788887777653
No 11
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=38.54 E-value=76 Score=20.23 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=25.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 033140 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (126)
Q Consensus 22 VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~ 50 (126)
-.+.|.--|.+|+++|-+.+.+++..|.+
T Consensus 49 ~~~~LG~yp~~sL~~AR~~a~~~r~~l~~ 77 (88)
T 3jtz_A 49 SRIALGAYPAISLSDARQQREGIRKMLAL 77 (88)
T ss_dssp EEEEEEETTTSCHHHHHHHHHHHHHHHTC
T ss_pred EEEEeECCCCCCHHHHHHHHHHHHHHHHc
Confidence 35678888999999999999999998864
No 12
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=36.18 E-value=75 Score=21.15 Aligned_cols=48 Identities=4% Similarity=0.012 Sum_probs=31.5
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCC
Q 033140 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF 69 (126)
Q Consensus 20 ~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHieP~~~~~ 69 (126)
+.|.+++.+|++++.+++.+|..+=+..- +++-. .-...|+--....+
T Consensus 3 FlV~m~V~~P~~~~~~~~~~~~a~Eka~a-~eLq~-~G~~~~lWRv~G~y 50 (96)
T 1mli_A 3 FHVKMTVKLPVDMDPAKATQLKADEKELA-QRLQR-EGTWRHLWRIAGHY 50 (96)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHHHH-HHHHh-CCeeEEEEEecCCc
Confidence 67899999999999999999976633333 23322 23455655554443
No 13
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=35.71 E-value=2.4e+02 Score=25.25 Aligned_cols=43 Identities=14% Similarity=0.053 Sum_probs=35.5
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHh-hCCCeeEEEEEE
Q 033140 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHK-SHPEVSEVFIHI 62 (126)
Q Consensus 20 ~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~-~~p~v~~V~IHi 62 (126)
-.+.+.+..|++.++++..++.+++|+.+++ +.|+|..+...+
T Consensus 570 ~~i~v~v~~p~gtsle~t~~~~~~ie~~l~~~~~p~V~~v~s~~ 613 (1057)
T 4dx5_A 570 GVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVN 613 (1057)
T ss_dssp SEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEe
Confidence 3567788999999999999999999999971 468888776544
No 14
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=33.42 E-value=64 Score=17.87 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=31.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEecCC
Q 033140 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAY 66 (126)
Q Consensus 24 lhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~-v~~V~IHieP~~ 66 (126)
++|.+.+..|-++-.++++.|-+.+.+.++- -.++.|.+.+..
T Consensus 6 i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~ 49 (63)
T 2x4k_A 6 VNVKLLEGRSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMK 49 (63)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEEC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcC
Confidence 3455566779999999999999999876331 257777777664
No 15
>2lfp_A Bacteriophage SPP1 complete nucleotide sequence; viral protein; NMR {Bacillus phage SPP1}
Probab=29.81 E-value=93 Score=20.87 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=27.5
Q ss_pred CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 033140 17 GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (126)
Q Consensus 17 G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~ 50 (126)
|....+.+||.- .. +..++.+|+.+|++.|..
T Consensus 64 ~~~~~~~idvws-~~-~~~~a~~ia~ai~~aL~~ 95 (139)
T 2lfp_A 64 GENITMDFHVWG-GT-TRAEAQDISSRVLEALTY 95 (139)
T ss_dssp SSCEEEEEEEEC-CS-CHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEEEEe-cC-CHHHHHHHHHHHHHHHhc
Confidence 567889999998 44 889999999999999963
No 16
>2kwa_A Kinase A inhibitor; bacterial signal transduction, KIPI, histidine kinase inhibi bacillus subtilis, transferase inhibitor; NMR {Bacillus subtilis}
Probab=29.76 E-value=1.1e+02 Score=19.52 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=29.6
Q ss_pred EEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh-CCC-------eeEEEEEEecCC
Q 033140 11 LRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS-HPE-------VSEVFIHIDPAY 66 (126)
Q Consensus 11 LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~-~p~-------v~~V~IHieP~~ 66 (126)
++++..|... +-|++.+.++..-...+ ..+.+.|++. +|+ ...++|+++|..
T Consensus 7 ~~i~~~GD~a---llVefg~~id~~~~~~v-~al~~~L~~~~~~Gv~EiVPa~~SllV~ydp~~ 66 (101)
T 2kwa_A 7 YQIEQLGDSA---MMIRFGEEINEQVNGIV-HAAAAYIEEQPFPGFIECIPAFTSLTVFYDMYE 66 (101)
T ss_dssp CEEEECSSSE---EEEECCCSSCHHHHHHH-HHHHHHHHHSCCTTEEEEEECSSEEEEEECHHH
T ss_pred eEEEEcCCcE---EEEEECCcCCHHHHHHH-HHHHHHHHccCCCCeEEeccCceEEEEEEcchH
Confidence 5788888853 22556777777653332 2344444332 343 345678888764
No 17
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=28.96 E-value=1.2e+02 Score=19.99 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=30.1
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCee
Q 033140 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVS 56 (126)
Q Consensus 21 ~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~ 56 (126)
.+.+++.++ .-|+++=-.+...|..+++++|+ ++
T Consensus 7 ~l~~~l~l~-~~SLKeKR~vvksl~~rlr~rFn-VS 40 (102)
T 1j27_A 7 LYTARLETP-ARSLKEKRALIKPALERLKARFP-VS 40 (102)
T ss_dssp EEEEEEECC-CSSHHHHHHHHHHHHHHHHHHSS-CE
T ss_pred EEEEEEEEe-CCChHHhHHHHHHHHHHHhhcCC-eE
Confidence 466788888 88999999999999999999997 54
No 18
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=28.28 E-value=80 Score=20.24 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=29.4
Q ss_pred CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 033140 18 SSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (126)
Q Consensus 18 ~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHie 63 (126)
..+.+.+.+..+.- ++ +..|...++++|+ ++|++..|.|.+.
T Consensus 42 ~~V~v~l~lt~~~c-p~--~~~l~~~i~~al~-~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 42 NNVKVLMTMTTPMC-PL--AGMILSDAEEAIK-KIEGVNNVEVELT 83 (103)
T ss_dssp CEEEEEECCSSSCC-SS--HHHHHHHHHHHHH-TSSSCCEEEEEEC
T ss_pred CEEEEEEEECCCCC-cH--HHHHHHHHHHHHH-hCCCcceEEEEEe
Confidence 46666666654433 43 7889999999996 5788887777653
No 19
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ...
Probab=28.14 E-value=2.1e+02 Score=23.89 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=45.0
Q ss_pred ceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCe
Q 033140 6 QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV 55 (126)
Q Consensus 6 ~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v 55 (126)
-++.+|..+..|..+++.+.+..-.-|-.--.-..++.+-..|.+.+|..
T Consensus 195 g~l~~i~~~~~g~~l~lrf~~~TgDAMG~NMvn~~~E~v~~~l~~~~~~~ 244 (441)
T 2r4f_A 195 ARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEM 244 (441)
T ss_dssp CEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccceEEEEeeCCEEEEEEEEecchhhcchhHHHHHHHHHHHHHhhCCCC
Confidence 35678889999999999999999999999999999999999999989864
No 20
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=26.65 E-value=3.2e+02 Score=24.46 Aligned_cols=41 Identities=27% Similarity=0.160 Sum_probs=34.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 033140 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (126)
Q Consensus 22 VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v~~V~IHie 63 (126)
+-+.+..+++.|+++..++.+++|+.|+ +.|++..+.-.+-
T Consensus 577 ~~v~~~~p~Gtsle~t~~~~~~ie~~l~-~~p~V~~v~s~~G 617 (1054)
T 3ne5_A 577 LLYMPSTLPGISAAEAASMLQKTDKLIM-SVPEVARVFGKTG 617 (1054)
T ss_dssp EEECCBCCTTCCHHHHHHHHHHHHHHHH-TSTTEEEEEEEEE
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEEEec
Confidence 3456778999999999999999999996 5799988876554
No 21
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=26.13 E-value=91 Score=17.32 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=30.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEecCC
Q 033140 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAY 66 (126)
Q Consensus 24 lhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~-v~~V~IHieP~~ 66 (126)
++|.+-+..|.++-.++++.|-+.+.+.++- -.++.|.+....
T Consensus 3 i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~ 46 (62)
T 1otf_A 3 AQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMP 46 (62)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeC
Confidence 3455556779999999999999999876431 156777665554
No 22
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=24.42 E-value=67 Score=20.14 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhCCCeeEEE
Q 033140 39 GVGENVRHQIHKSHPEVSEVF 59 (126)
Q Consensus 39 ~I~~~IE~~I~~~~p~v~~V~ 59 (126)
.+...||+.|++.+|.+..|.
T Consensus 51 Tlk~gIe~~L~~~vpei~~V~ 71 (74)
T 1th5_A 51 TVRIAVSKKLREKIPSIQIVQ 71 (74)
T ss_dssp SHHHHHHHHHHHHCTTCSEEE
T ss_pred HHHHHHHHHHHHHCCCCcEEE
Confidence 566789999999999987664
No 23
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=22.60 E-value=2e+02 Score=20.02 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=36.7
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCe----eEEEEEEecC
Q 033140 19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV----SEVFIHIDPA 65 (126)
Q Consensus 19 ~~~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~v----~~V~IHieP~ 65 (126)
.-||-+.|.+-++-|.++=.+++++|-+.|.+.++.. ..++|.+.-.
T Consensus 80 ~~FVhV~i~ll~GRt~EqK~~L~e~v~~al~~~l~~~~~~~~~lsVeI~E~ 130 (146)
T 3e6q_A 80 RAYLHACLSILDGRDAATRQALGESLCEVLAGAVAGGGEEGVQVSVEVREM 130 (146)
T ss_dssp CCEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHEEECSSSCEEEEEEEEEE
T ss_pred ccEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCccCCceEEEEEEEEC
Confidence 3577888888899999999999999999999988753 2455555443
No 24
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=22.26 E-value=1.1e+02 Score=17.06 Aligned_cols=44 Identities=7% Similarity=-0.047 Sum_probs=31.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEecCCC
Q 033140 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAYF 67 (126)
Q Consensus 24 lhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~-v~~V~IHieP~~~ 67 (126)
++|.+.+..|.++-.+++.+|-+.+.+.++- -.++.|.+.....
T Consensus 4 i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~ 48 (64)
T 3abf_A 4 LKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRR 48 (64)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECG
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCH
Confidence 3444555679998899999999999876542 1578888776653
No 25
>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase; lyase/transferase, folate biosynthesis, pyrophosphokinase, lyase; 2.9A {Streptococcus pneumoniae}
Probab=21.59 E-value=84 Score=24.19 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=34.1
Q ss_pred eCCEEEEEEEEEECCC-----------CCHHH----------------HHHHHHHHHHHHHhhCCCeeEEEEEEecC
Q 033140 16 AGSSLYLDVHIVVDPF-----------SSVSA----------------AHGVGENVRHQIHKSHPEVSEVFIHIDPA 65 (126)
Q Consensus 16 ~G~~~~VdlhI~Vd~~-----------lsv~e----------------AH~I~~~IE~~I~~~~p~v~~V~IHieP~ 65 (126)
.|..+.+|+.+.++.. ++-.+ ...++++|-+.|.+.+|.+..|.|.+.=-
T Consensus 24 ~~Q~~~vdv~l~~d~~~a~~sDdl~~tvdY~~v~~~I~~~~~~~~f~LiE~lA~~Ia~~ll~~~~~v~~V~V~v~Kp 100 (270)
T 2cg8_A 24 LGQKFIVSAILSYDMTKAATDLDLTASVHYGELCQQWTTWFQETSEDLIETVAYKLVERTFESYPLVQEMKLELKKP 100 (270)
T ss_dssp HCEEEEEEEEEEECCHHHHC-------CCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHCTTCCEEEEEEEET
T ss_pred cCcEEEEEEEEEEchhhccccCCccccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHhcCCceEEEEEEeec
Confidence 4678999999988731 11111 23456777778888899888888877533
No 26
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=21.56 E-value=70 Score=20.74 Aligned_cols=62 Identities=8% Similarity=-0.066 Sum_probs=43.4
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCH-HHHHHHHHHHHHHHHhhCCCe-eEEEEEEecCCCCCC
Q 033140 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSV-SAAHGVGENVRHQIHKSHPEV-SEVFIHIDPAYFQFS 70 (126)
Q Consensus 7 ~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv-~eAH~I~~~IE~~I~~~~p~v-~~V~IHieP~~~~~~ 70 (126)
++..+.+++....+.|.+|..-|+-+ + ... .-.++++..|++.++.. ..|.|.+.....|..
T Consensus 24 Gis~IeIeR~~~~i~I~I~tarPg~v-IGkkG-~~Ie~L~~~l~k~~~~~~~~v~I~I~eV~~P~l 87 (92)
T 1wh9_A 24 GYSGVEVRVTPTRTEIIILATRTQNV-LGEKG-RRIRELTAVVQKRFGFPEGSVELYAEKVATRGS 87 (92)
T ss_dssp TEEEEEEEECSSCEEEEEEESCHHHH-HCGGG-HHHHHHHHHHHHHHCCCTTSEEEEEEECCCSCC
T ss_pred ceeeEEEEECCCeEEEEEEeCCCceE-EcCCc-HHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCc
Confidence 67888999999999999998887554 3 233 22467777777766410 367888887777654
No 27
>1dhn_A DHNA, 7,8-dihydroneopterin aldolase; pterin binding, folate biosynthesis, antibiotic target, beta; 1.65A {Staphylococcus aureus} SCOP: d.96.1.3 PDB: 1rri_A* 1rrw_A* 1rry_A* 1rs2_A* 1rs4_A* 1rsd_A* 1rsi_A* 1u68_A* 2dhn_A* 2nm2_A* 2nm3_A*
Probab=21.20 E-value=1.4e+02 Score=19.76 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=40.6
Q ss_pred ceeeeEEEEe----------eCCEEEEEEEEEECCC-----------CCHHHH----------------HHHHHHHHHHH
Q 033140 6 QGCHRLRGRR----------AGSSLYLDVHIVVDPF-----------SSVSAA----------------HGVGENVRHQI 48 (126)
Q Consensus 6 ~~Vh~LR~R~----------~G~~~~VdlhI~Vd~~-----------lsv~eA----------------H~I~~~IE~~I 48 (126)
+-+.+|+..- .|..+.+|+.+.++.. ++-.+. ..++++|-+.+
T Consensus 5 I~i~~l~~~~~iGv~~~Er~~~Q~~~vdl~l~~d~~~a~~sDdl~~tvdY~~v~~~i~~~v~~~~~~LiE~lA~~Ia~~~ 84 (121)
T 1dhn_A 5 IFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRI 84 (121)
T ss_dssp EEEEEEEEEECCSSSHHHHHHCEEEEEEEEEEECCHHHHHHCCGGGSCCHHHHHHHHHHHHTSSCCSCHHHHHHHHHHHH
T ss_pred EEECCeEEEEEECCCHHHHccCCEEEEEEEEEEcchhccccCCccceeCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 4456666654 4678999999998842 222222 24578888889
Q ss_pred HhhCCCeeEEEEEEecC
Q 033140 49 HKSHPEVSEVFIHIDPA 65 (126)
Q Consensus 49 ~~~~p~v~~V~IHieP~ 65 (126)
.+.||.+..|.|.+.=-
T Consensus 85 l~~~~~v~~v~V~v~Kp 101 (121)
T 1dhn_A 85 NSQYNRVMETKVRITKE 101 (121)
T ss_dssp HHHCTTEEEEEEEEEES
T ss_pred HHHCCCceEEEEEEEcC
Confidence 99999888788776533
No 28
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=21.09 E-value=1.4e+02 Score=17.57 Aligned_cols=42 Identities=12% Similarity=0.039 Sum_probs=30.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEecCC
Q 033140 25 HIVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAY 66 (126)
Q Consensus 25 hI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~-v~~V~IHieP~~ 66 (126)
+|.+.+..|.++-.+++..|-+.+.+.++- -.++.|.+....
T Consensus 5 ~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~ 47 (72)
T 3mb2_A 5 RITMLEGRSTEQKAELARALSAAAAAAFDVPLAEVRLIIQEVP 47 (72)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcC
Confidence 344446789999999999999999876431 157777777664
No 29
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=20.93 E-value=1.3e+02 Score=17.32 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=32.0
Q ss_pred EEEEECC---CCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEecCC
Q 033140 24 VHIVVDP---FSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAY 66 (126)
Q Consensus 24 lhI~Vd~---~lsv~eAH~I~~~IE~~I~~~~p~-v~~V~IHieP~~ 66 (126)
++|.+-+ ..|.++-.++++.|-+.+.+.++- -.++.|.+....
T Consensus 3 i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~ 49 (67)
T 3m21_A 3 INIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVD 49 (67)
T ss_dssp EEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeC
Confidence 4566666 789999999999999999876542 146777776654
No 30
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=20.35 E-value=2.7e+02 Score=25.05 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=33.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC--eeEEEEE
Q 033140 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPE--VSEVFIH 61 (126)
Q Consensus 21 ~VdlhI~Vd~~lsv~eAH~I~~~IE~~I~~~~p~--v~~V~IH 61 (126)
.+.+.+.+|++.++.+..+..+++|+.|++ .|+ +..+...
T Consensus 571 ~~~v~~~~p~g~s~~~t~~~~~~ie~~l~~-~p~~~V~~v~s~ 612 (1052)
T 2v50_A 571 VLFAQVQTPPGSSAERTQVVVDSMREYLLE-KESSSVSSVFTV 612 (1052)
T ss_dssp EEEEEEECSTTCCHHHHHHHHHHHHHHHHH-HTTTTEEEEEEE
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHHHHh-CCCceEEEEEEE
Confidence 457788899999999999999999999976 588 7766543
No 31
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=20.08 E-value=1.4e+02 Score=21.31 Aligned_cols=38 Identities=13% Similarity=-0.009 Sum_probs=28.2
Q ss_pred cceeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHH
Q 033140 5 LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGE 42 (126)
Q Consensus 5 V~~Vh~LR~R~~G~~~~VdlhI~Vd~~lsv~eAH~I~~ 42 (126)
...+..||+.-.|..--|==.|.|++++|+.+-|.+..
T Consensus 5 ~~~iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq 42 (188)
T 2i1s_A 5 FEKVYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQ 42 (188)
T ss_dssp CCEEEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHH
T ss_pred CCcEEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHH
Confidence 34577788887765333457789999999999997653
Done!