RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 033140
(126 letters)
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
(CDF), transporter, zinc, membrane protein, cytosolic
domain; 2.84A {Thermotoga maritima}
Length = 107
Score = 77.5 bits (191), Expect = 6e-20
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 6 QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
HR+R RR G+ ++++ I VD SV AH + +R ++ K ++ +V IH++P
Sbjct: 26 HNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPL 85
Query: 66 Y 66
Sbjct: 86 G 86
>3byp_A CZRB protein; membrane protein, zinc transporter, transport
protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1
PDB: 3byr_A
Length = 94
Score = 71.2 bits (175), Expect = 1e-17
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
H L+ RRAG +L+ H+VV + V AH + + + + ++ P + + IH++P
Sbjct: 29 EVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPE 86
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 68.7 bits (169), Expect = 3e-15
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
G H LR R++G + ++ +H+ ++ + AH V + V I + P +V IH DP
Sbjct: 223 GAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGS-DVIIHQDPC 280
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 2e-04
Identities = 32/148 (21%), Positives = 46/148 (31%), Gaps = 53/148 (35%)
Query: 4 SLQG-CHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62
SL G LR +A S L D + PFS + + S F+ +
Sbjct: 385 SLYGLNLTLRKAKAPSGL--DQSRI--PFS-----------------ERKLKFSNRFLPV 423
Query: 63 D-PAYFQFSP---STMDQLGLEGCKAHSSNICVDDLDIDAVVYNT--------LSTKFPE 110
P F S D + + ++ + D+ I VY+T LS E
Sbjct: 424 ASP--F-HSHLLVPASDLI-NKDLVKNNVSFNAKDIQIP--VYDTFDGSDLRVLSGSISE 477
Query: 111 VANRDL------W-------ATHSLAFD 125
+ W ATH L F
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFG 505
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 29.1 bits (66), Expect = 0.41
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 68 QFSPSTMDQLGLE-GCKAHSSNICVDDLDIDAVVYNTLSTKF 108
QF L LE G + + D+DA VY + + F
Sbjct: 236 QFGGQPQKILALEMGGNN--PLVVEEVADLDAAVYTIIQSAF 275
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein
structure initiative, PSI, joint center for structural
genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1
PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Length = 350
Score = 28.9 bits (64), Expect = 0.43
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 38 HGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF----SPSTMDQLGLEGCKAHSSNICVDD 93
G+ + ++ + V++H P+Y+ + + G +AH +++
Sbjct: 256 LREGQEAILKRYQVTGDRLRVYLHYLPSYYHLHVHFTALGFEAPGSGVERAHLLAQVIEN 315
Query: 94 LDIDAVVYNTLSTKFPEVANRDLW 117
L+ D Y + F + L
Sbjct: 316 LECDPKHYQQRTLTFALRTDDPLL 339
>2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural GENO PSI,
protein structure initiative, midwest center for struc
genomics, MCSG; HET: NAD 1PE; 2.15A {Escherichia coli}
Length = 385
Score = 28.5 bits (64), Expect = 0.61
Identities = 5/42 (11%), Positives = 9/42 (21%)
Query: 26 IVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67
+ + + Q I I+P F
Sbjct: 263 AMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELF 304
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC
transporter, periplasmic SO binding protein,
bicarbonate-binding protein; 1.35A {Synechocystis SP}
PDB: 2i48_A 2i4b_A 2i4c_A
Length = 429
Score = 28.1 bits (62), Expect = 0.76
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 15 RAGSSLYLDVHIVVDPFSSVSAAHGVGENVR--HQIHKSHPE----VSEVFIHIDPAYFQ 68
R G+ +D DP+ +G QI HPE + ++ +P +
Sbjct: 209 RNGT---MDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATK 265
>1rfm_A L-sulfolactate dehydrogenase; methanogens, coenzyme M,
hyperthermostable, Pro-S hydrogen transfer; HET: NAD;
2.50A {Methanocaldococcus jannaschii} SCOP: c.122.1.1
PDB: 2x06_A*
Length = 344
Score = 28.1 bits (63), Expect = 0.86
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 26 IVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67
+ ++ S++ A + + ++FI I+P +F
Sbjct: 231 LAIEMLSAIGGAEVGTKVKGTANPEERCTKGDLFIAINPEFF 272
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta
protein; 1.50A {Synechocystis SP}
Length = 417
Score = 27.4 bits (60), Expect = 1.6
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 22 LDVHIVVDPFSSVSAAHGVGENVR--HQIHKSHPE----VSEVFIHIDPAYFQ 68
++ V +P+ + GVG Q+ K HPE + ++ +P +
Sbjct: 205 MESFCVGEPWPLQTVNQGVGYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAK 257
>3uoe_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.31A {Sinorhizobium meliloti}
Length = 357
Score = 26.9 bits (60), Expect = 1.7
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 26 IVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAYFQFSPSTMDQL 77
+ ++ + A + +V + HP ++ I IDP+ S +
Sbjct: 254 LAIELLVAALAGSNLAPDVNGTLDDIHPANKGDLLILIDPSAGAGSIPALAAY 306
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function,
protein structure INI PSI-2; 2.51A {Corynebacterium
diphtheriae nctc 13129ORGANISM_TAXID}
Length = 507
Score = 26.6 bits (59), Expect = 2.7
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 74 MDQLG-LEGCKAHSSNI 89
+DQL L GC H++ I
Sbjct: 452 LDQLKNLRGCDVHTTTI 468
>3tmg_A Glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein...; ssgcid,
structural genomics; 1.90A {Borrelia burgdorferi}
Length = 280
Score = 25.9 bits (57), Expect = 3.9
Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 19/98 (19%)
Query: 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEG 81
D+ + DP + V VR + + VF +F +S + L +
Sbjct: 191 YDIKFLDDPDLIMGGIESVHTLVRLGLENDDFDAYYVF-----DHFYWSDDLILPLMDK- 244
Query: 82 CKAHSSNICVDDLDIDAVVYNTLSTKFPEVANRDLWAT 119
+ + N+++ T
Sbjct: 245 -------NDKEPGKEYRNAVEFVE------KNKEIVKT 269
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 25.6 bits (57), Expect = 5.4
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 72 STMDQLGLE--GCKAHSSNICVDDLDIDAVVYNTLSTKF 108
+ M + LE G I +DD D+ +S F
Sbjct: 251 AKMIPVVLELGG---KDPAIVLDDADLKLTASQIVSGAF 286
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C
transferase; 1.60A {Pyrobaculum aerophilum}
Length = 409
Score = 25.2 bits (56), Expect = 7.3
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 7/24 (29%)
Query: 14 RRAGSSLYLDVHIVVDPFSSVSAA 37
S+L D +SSV+AA
Sbjct: 224 HVVASTL-------SDLYSSVAAA 240
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the
center for structural genomics of I diseases, csgid,
oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Length = 223
Score = 25.0 bits (54), Expect = 7.7
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 11/58 (18%)
Query: 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEV---------FIHIDPAYFQ 68
L ++ H VD SSVS V ++ + + ID
Sbjct: 8 LIINAHPKVDDTSSVSIK--VFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLS 63
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus
solfataricus} SCOP: a.103.1.1
Length = 377
Score = 24.8 bits (55), Expect = 9.5
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 7/24 (29%)
Query: 14 RRAGSSLYLDVHIVVDPFSSVSAA 37
A S+L D +SS++AA
Sbjct: 193 LVAASTL-------SDMYSSLTAA 209
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.413
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,940,487
Number of extensions: 102084
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 30
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)