RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 033140
         (126 letters)



>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus
          thermophilus [TaxId: 274]}
          Length = 82

 Score = 69.4 bits (170), Expect = 2e-17
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 7  GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
            H L+ RRAG   +L+ H+VV   + V  AH + + +   + ++ P + +  IH++P 
Sbjct: 24 EVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPE 81


>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
          {Escherichia coli [TaxId: 562]}
          Length = 82

 Score = 64.7 bits (158), Expect = 1e-15
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 6  QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
           G H LR R++G + ++ +H+ ++    +  AH V + V   I +  P  S+V IH DP 
Sbjct: 21 SGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP-GSDVIIHQDPC 79


>d1llaa3 b.1.18.3 (A:380-628) Arthropod hemocyanin, C-terminal
           domain {Horseshoe crab (Limulus polyphemus) [TaxId:
           6850]}
          Length = 249

 Score = 26.0 bits (57), Expect = 1.4
 Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 7/38 (18%)

Query: 71  PSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKF 108
           P   D L     +       V D+ + A V N + T  
Sbjct: 1   PYDHDVLNFPDIQ-------VQDVTLHARVDNVVHTFM 31


>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 363

 Score = 24.3 bits (52), Expect = 5.7
 Identities = 9/58 (15%), Positives = 22/58 (37%)

Query: 32  SSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNI 89
           ++V  +  +   + + + K++P+V    ++ID A  Q          L         +
Sbjct: 196 ANVLQSSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDIL 253


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 467,584
Number of extensions: 18837
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 7
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)