BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033141
MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNT
KRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFSLIQYQPH
SSCVYV

High Scoring Gene Products

Symbol, full name Information P value
AT3G47650 protein from Arabidopsis thaliana 3.1e-19

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033141
        (126 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2079132 - symbol:AT3G47650 species:3702 "Arabi...   230  3.1e-19   1


>TAIR|locus:2079132 [details] [associations]
            symbol:AT3G47650 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0031072 "heat shock
            protein binding" evidence=IEA] [GO:0051082 "unfolded protein
            binding" evidence=IEA] [GO:0006098 "pentose-phosphate shunt"
            evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0009657 "plastid organization" evidence=RCA] [GO:0009773
            "photosynthetic electron transport in photosystem I" evidence=RCA]
            [GO:0010207 "photosystem II assembly" evidence=RCA] [GO:0019288
            "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] InterPro:IPR001305
            GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
            SUPFAM:SSF57938 EMBL:AL132955 EMBL:AF370246 EMBL:AY062972
            IPI:IPI00546027 PIR:T45725 RefSeq:NP_190349.1 UniGene:At.23492
            ProteinModelPortal:Q9SN73 SMR:Q9SN73 STRING:Q9SN73 PaxDb:Q9SN73
            PRIDE:Q9SN73 ProMEX:Q9SN73 EnsemblPlants:AT3G47650.1 GeneID:823919
            KEGG:ath:AT3G47650 TAIR:At3g47650 eggNOG:NOG323241
            HOGENOM:HOG000241823 InParanoid:Q9SN73 OMA:ANSLCFF PhylomeDB:Q9SN73
            ProtClustDB:CLSN2719659 ArrayExpress:Q9SN73 Genevestigator:Q9SN73
            Uniprot:Q9SN73
        Length = 136

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 46/89 (51%), Positives = 58/89 (65%)

Query:    18 KPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGN-TKRNSVVCADCDGNGAV 76
             KP +H  S++D+   L+    +  + +R  S  VKAA NN   TK NS+VCA+C+G G V
Sbjct:    24 KP-SHFFSTNDNTSSLVQKR-ELLQTSRSQSFEVKAANNNPQGTKPNSLVCANCEGEGCV 81

Query:    77 LCSQCKGSGVNAVDFFGGQFKAGDSCWLC 105
              CSQCKG GVN +D F GQFKAG  CWLC
Sbjct:    82 ACSQCKGGGVNLIDHFNGQFKAGALCWLC 110


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.128   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126       126   0.00091  102 3  11 22  0.38    31
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  141 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.25u 0.11s 13.36t   Elapsed:  00:00:00
  Total cpu time:  13.25u 0.11s 13.36t   Elapsed:  00:00:00
  Start:  Fri May 10 15:35:35 2013   End:  Fri May 10 15:35:35 2013

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