Query 033141
Match_columns 126
No_of_seqs 31 out of 33
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 10:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.1 0.0002 4.3E-09 46.7 1.3 46 67-112 1-54 (66)
2 PLN03165 chaperone protein dna 96.3 0.0015 3.3E-08 48.1 1.1 49 61-110 38-86 (111)
3 PRK10767 chaperone protein Dna 96.1 0.002 4.4E-08 53.1 1.0 47 63-111 141-193 (371)
4 PRK14286 chaperone protein Dna 95.6 0.0045 9.7E-08 51.6 0.9 47 63-111 149-201 (372)
5 PRK14290 chaperone protein Dna 95.6 0.0051 1.1E-07 50.9 1.2 48 64-111 149-203 (365)
6 PRK14279 chaperone protein Dna 95.5 0.0046 9.9E-08 52.0 0.5 48 63-112 172-225 (392)
7 PRK14300 chaperone protein Dna 95.4 0.0065 1.4E-07 50.5 1.1 47 63-111 144-196 (372)
8 PRK14294 chaperone protein Dna 95.3 0.0066 1.4E-07 50.3 1.0 47 63-111 143-195 (366)
9 PRK14289 chaperone protein Dna 95.3 0.0076 1.7E-07 50.1 1.2 49 63-111 153-209 (386)
10 PRK14284 chaperone protein Dna 95.2 0.0085 1.9E-07 50.1 1.4 48 63-112 157-210 (391)
11 PRK14278 chaperone protein Dna 95.1 0.01 2.2E-07 49.6 1.4 49 63-111 138-194 (378)
12 PRK14283 chaperone protein Dna 95.0 0.0083 1.8E-07 49.9 0.8 49 63-111 145-201 (378)
13 PRK14301 chaperone protein Dna 95.0 0.0091 2E-07 49.8 0.9 48 63-112 143-196 (373)
14 PRK14288 chaperone protein Dna 95.0 0.01 2.3E-07 49.4 1.2 46 64-111 140-190 (369)
15 PRK14282 chaperone protein Dna 94.9 0.011 2.3E-07 49.1 1.1 49 63-111 151-207 (369)
16 PRK14276 chaperone protein Dna 94.9 0.01 2.2E-07 49.5 0.9 50 63-112 145-202 (380)
17 PRK14298 chaperone protein Dna 94.8 0.012 2.7E-07 49.2 1.2 49 63-111 140-196 (377)
18 PRK14295 chaperone protein Dna 94.8 0.0096 2.1E-07 50.0 0.5 47 63-111 165-217 (389)
19 PRK14285 chaperone protein Dna 94.7 0.015 3.2E-07 48.4 1.5 47 63-111 145-197 (365)
20 PRK14280 chaperone protein Dna 94.7 0.012 2.7E-07 49.0 0.9 49 63-111 142-198 (376)
21 PRK14296 chaperone protein Dna 94.6 0.014 3E-07 48.8 1.1 49 63-111 148-204 (372)
22 PRK14277 chaperone protein Dna 94.6 0.013 2.8E-07 49.0 0.8 49 63-111 154-210 (386)
23 PRK14287 chaperone protein Dna 94.6 0.016 3.4E-07 48.4 1.2 49 63-111 137-193 (371)
24 PRK14297 chaperone protein Dna 94.6 0.014 3.1E-07 48.6 0.9 49 63-111 147-203 (380)
25 PF00684 DnaJ_CXXCXGXG: DnaJ c 94.5 0.026 5.7E-07 36.7 1.9 10 65-74 16-25 (66)
26 PLN03165 chaperone protein dna 94.3 0.032 6.9E-07 41.2 2.3 29 62-90 73-101 (111)
27 PRK14281 chaperone protein Dna 94.2 0.021 4.6E-07 48.0 1.2 49 63-111 162-217 (397)
28 TIGR02349 DnaJ_bact chaperone 94.1 0.022 4.7E-07 46.6 1.1 49 63-111 142-198 (354)
29 PRK14292 chaperone protein Dna 93.9 0.029 6.3E-07 46.4 1.5 50 63-112 138-196 (371)
30 COG0484 DnaJ DnaJ-class molecu 93.5 0.034 7.3E-07 48.2 1.2 51 61-112 139-196 (371)
31 PRK14291 chaperone protein Dna 92.8 0.042 9.2E-07 45.9 0.9 45 63-109 155-205 (382)
32 PRK14293 chaperone protein Dna 92.8 0.043 9.2E-07 45.7 0.9 48 63-110 142-197 (374)
33 TIGR02642 phage_xxxx uncharact 92.8 0.055 1.2E-06 42.8 1.4 23 64-86 99-126 (186)
34 PTZ00037 DnaJ_C chaperone prot 91.4 0.099 2.1E-06 45.0 1.5 24 63-86 149-177 (421)
35 PRK10767 chaperone protein Dna 90.8 0.12 2.7E-06 42.7 1.4 39 64-112 159-208 (371)
36 PRK14298 chaperone protein Dna 87.7 0.34 7.3E-06 40.7 1.9 38 65-112 159-211 (377)
37 PRK14283 chaperone protein Dna 87.5 0.44 9.5E-06 39.8 2.4 40 64-113 163-217 (378)
38 PRK14291 chaperone protein Dna 87.0 0.32 6.8E-06 40.8 1.3 37 64-111 173-220 (382)
39 PRK14286 chaperone protein Dna 86.8 0.31 6.7E-06 40.8 1.1 23 65-87 168-201 (372)
40 PRK14287 chaperone protein Dna 86.5 0.35 7.5E-06 40.5 1.3 37 65-111 156-207 (371)
41 PRK14284 chaperone protein Dna 85.8 0.52 1.1E-05 39.6 2.0 38 64-111 175-223 (391)
42 COG0484 DnaJ DnaJ-class molecu 85.7 0.41 9E-06 41.6 1.4 26 63-88 182-210 (371)
43 PRK14288 chaperone protein Dna 84.6 0.61 1.3E-05 39.0 1.9 36 64-109 156-202 (369)
44 PRK14277 chaperone protein Dna 84.2 0.5 1.1E-05 39.7 1.2 38 64-111 172-224 (386)
45 PRK14282 chaperone protein Dna 83.6 0.66 1.4E-05 38.6 1.7 35 65-109 170-219 (369)
46 PRK14285 chaperone protein Dna 83.0 0.72 1.6E-05 38.5 1.7 37 65-111 164-211 (365)
47 PRK14296 chaperone protein Dna 82.9 0.72 1.6E-05 38.7 1.7 12 65-76 167-178 (372)
48 PRK14300 chaperone protein Dna 82.4 0.81 1.8E-05 38.2 1.7 39 64-112 162-211 (372)
49 PRK14292 chaperone protein Dna 82.4 0.76 1.6E-05 38.1 1.5 40 64-113 157-211 (371)
50 PRK14293 chaperone protein Dna 82.1 1.2 2.5E-05 37.3 2.6 38 64-111 160-212 (374)
51 TIGR02349 DnaJ_bact chaperone 82.1 0.85 1.8E-05 37.4 1.7 11 65-75 161-171 (354)
52 PRK14279 chaperone protein Dna 82.1 0.6 1.3E-05 39.4 0.9 38 64-111 190-238 (392)
53 PRK14289 chaperone protein Dna 81.3 0.85 1.8E-05 38.1 1.5 38 64-111 171-223 (386)
54 PTZ00037 DnaJ_C chaperone prot 81.2 0.93 2E-05 39.2 1.7 10 65-74 167-176 (421)
55 PRK14290 chaperone protein Dna 80.8 1.6 3.6E-05 36.3 3.0 39 63-111 164-217 (365)
56 PRK14278 chaperone protein Dna 80.8 1 2.2E-05 37.9 1.7 36 65-110 157-207 (378)
57 PRK14280 chaperone protein Dna 80.4 1.1 2.4E-05 37.5 1.9 11 65-75 161-171 (376)
58 PRK14297 chaperone protein Dna 80.3 0.87 1.9E-05 38.1 1.2 36 64-109 165-215 (380)
59 PRK14294 chaperone protein Dna 79.7 1.1 2.3E-05 37.3 1.6 22 65-86 162-194 (366)
60 PRK14281 chaperone protein Dna 78.5 1.7 3.6E-05 36.8 2.3 38 64-111 179-231 (397)
61 KOG0712 Molecular chaperone (D 77.9 1.6 3.4E-05 37.8 2.1 30 63-92 126-160 (337)
62 PRK14301 chaperone protein Dna 77.4 1.3 2.9E-05 37.1 1.5 22 65-86 162-194 (373)
63 PRK14276 chaperone protein Dna 76.2 1.5 3.4E-05 36.7 1.6 11 65-75 164-174 (380)
64 KOG2813 Predicted molecular ch 75.4 1.4 3E-05 39.3 1.1 41 63-116 233-273 (406)
65 PRK14295 chaperone protein Dna 74.1 1.8 3.9E-05 36.6 1.4 21 65-85 184-215 (389)
66 COG1107 Archaea-specific RecJ- 73.8 2 4.4E-05 40.6 1.8 45 65-111 3-65 (715)
67 KOG2813 Predicted molecular ch 71.2 2.6 5.7E-05 37.6 1.8 82 25-108 146-243 (406)
68 KOG0712 Molecular chaperone (D 62.5 4.2 9.1E-05 35.2 1.3 28 63-90 169-201 (337)
69 cd03031 GRX_GRX_like Glutaredo 59.4 6 0.00013 29.8 1.6 24 64-87 99-122 (147)
70 COG1107 Archaea-specific RecJ- 57.4 6.2 0.00013 37.5 1.6 59 62-124 51-116 (715)
71 TIGR00630 uvra excinuclease AB 41.2 11 0.00023 36.2 0.5 12 65-76 737-748 (924)
72 KOG2824 Glutaredoxin-related p 39.3 18 0.0004 31.0 1.6 22 63-84 228-249 (281)
73 PF03589 Antiterm: Antitermina 37.8 16 0.00034 26.0 0.8 28 64-91 5-48 (95)
74 PRK00488 pheS phenylalanyl-tRN 36.6 21 0.00046 30.7 1.6 18 65-85 261-278 (339)
75 TIGR00630 uvra excinuclease AB 36.5 19 0.0004 34.5 1.3 32 76-109 737-769 (924)
76 KOG1006 Mitogen-activated prot 35.6 13 0.00028 33.0 0.1 23 84-107 121-143 (361)
77 PF07092 DUF1356: Protein of u 34.5 26 0.00055 29.3 1.7 48 63-126 26-78 (238)
78 PRK00349 uvrA excinuclease ABC 34.4 17 0.00037 34.9 0.7 14 64-77 738-751 (943)
79 PF07167 PhaC_N: Poly-beta-hyd 33.7 20 0.00044 28.4 0.9 18 108-125 126-143 (172)
80 PF07092 DUF1356: Protein of u 33.6 18 0.00038 30.2 0.6 17 63-79 37-53 (238)
81 PF14843 GF_recep_IV: Growth f 32.1 40 0.00087 24.5 2.2 41 66-106 5-55 (132)
82 smart00261 FU Furin-like repea 28.9 30 0.00066 20.1 0.9 20 64-83 8-27 (46)
83 PF08273 Prim_Zn_Ribbon: Zinc- 28.4 27 0.00059 21.7 0.7 12 71-82 22-33 (40)
84 PRK00349 uvrA excinuclease ABC 26.9 36 0.00078 32.8 1.5 34 75-110 738-772 (943)
85 PF05310 Tenui_NS3: Tenuivirus 26.3 22 0.00048 29.1 0.0 18 98-115 97-118 (186)
86 cd00064 FU Furin-like repeats. 26.2 34 0.00073 20.3 0.8 20 66-85 5-24 (49)
87 COG4643 Uncharacterized protei 24.4 55 0.0012 29.2 2.1 37 59-95 27-75 (366)
88 KOG2824 Glutaredoxin-related p 23.9 48 0.001 28.6 1.5 19 64-82 262-280 (281)
89 PRK00635 excinuclease ABC subu 23.1 36 0.00078 35.3 0.8 30 78-109 1610-1640(1809)
90 PRK00635 excinuclease ABC subu 22.7 41 0.0009 34.9 1.1 28 63-90 1606-1645(1809)
91 PF08271 TF_Zn_Ribbon: TFIIB z 22.1 58 0.0013 19.4 1.3 9 73-81 17-25 (43)
92 smart00778 Prim_Zn_Ribbon Zinc 22.0 57 0.0012 20.0 1.2 12 71-82 21-32 (37)
93 TIGR02098 MJ0042_CXXC MJ0042 f 21.7 81 0.0018 17.9 1.8 6 65-70 26-31 (38)
94 PF13719 zinc_ribbon_5: zinc-r 20.8 84 0.0018 18.5 1.8 9 74-82 24-32 (37)
No 1
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.13 E-value=0.0002 Score=46.68 Aligned_cols=46 Identities=37% Similarity=0.827 Sum_probs=35.9
Q ss_pred eccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeecccccccc
Q 033141 67 CADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 67 C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~il 112 (126)
|+.|+|+|+ ..|..|+|+|+-..-+ +.|.|+.-..|-.|.|+-++.
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 789999998 7899999999876654 677788888999999998875
No 2
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.34 E-value=0.0015 Score=48.14 Aligned_cols=49 Identities=33% Similarity=0.655 Sum_probs=35.3
Q ss_pred ccCceeeccCCCCCcEecccccCCccCcccccCceeccCCeEeecccccc
Q 033141 61 KRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQ 110 (126)
Q Consensus 61 kp~s~~C~dCdGnGai~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~ 110 (126)
......|..|+|.|+..|..|.|+|+-..... +.++.=..|.-|.|.-+
T Consensus 38 ~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~-g~~q~~~~C~~C~G~Gk 86 (111)
T PLN03165 38 RENTQPCFPCSGTGAQVCRFCVGSGNVTVELG-GGEKEVSKCINCDGAGS 86 (111)
T ss_pred hccCCCCCCCCCCCCcCCCCCcCcCeEEEEeC-CcEEEEEECCCCCCcce
Confidence 34568899999999999999999998766552 32333446666666654
No 3
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.15 E-value=0.002 Score=53.12 Aligned_cols=47 Identities=30% Similarity=0.700 Sum_probs=33.4
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
....|+.|+|+|+ ..|.+|.|+|+-.... |.|..-..|+-|.|+-.+
T Consensus 141 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~ 193 (371)
T PRK10767 141 TLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ--GFFTVQQTCPTCHGRGKI 193 (371)
T ss_pred ecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee--ceEEEEEeCCCCCCceeE
Confidence 4578999999995 4799999999765543 555444566666666544
No 4
>PRK14286 chaperone protein DnaJ; Provisional
Probab=95.62 E-value=0.0045 Score=51.59 Aligned_cols=47 Identities=32% Similarity=0.681 Sum_probs=35.4
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
....|+.|+|.|+ ..|.+|.|+|+-.... |.|.--..|.-|.|+-.+
T Consensus 149 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~~~~~C~~C~G~G~~ 201 (372)
T PRK14286 149 RLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ--GFFSVATTCPTCRGKGTV 201 (372)
T ss_pred ccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe--ceEEEEEeCCCCCceeeE
Confidence 4578999999996 6799999999765553 555555578888777544
No 5
>PRK14290 chaperone protein DnaJ; Provisional
Probab=95.60 E-value=0.0051 Score=50.90 Aligned_cols=48 Identities=31% Similarity=0.767 Sum_probs=32.9
Q ss_pred ceeeccCCCCCc-----EecccccCCccCcccccCcee--ccCCeEeeccccccc
Q 033141 64 SVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQF--KAGDSCWLCGQSSQH 111 (126)
Q Consensus 64 s~~C~dCdGnGa-----i~C~QCkG~GvN~~D~FnG~f--KaG~~CWLCrGkk~i 111 (126)
-..|+.|+|+|+ ..|.+|.|+|+-..-...|.| ..-..|+-|.|+..+
T Consensus 149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~ 203 (365)
T PRK14290 149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI 203 (365)
T ss_pred cccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE
Confidence 478999999996 579999999976554444443 233456666666544
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=95.47 E-value=0.0046 Score=51.99 Aligned_cols=48 Identities=31% Similarity=0.743 Sum_probs=36.5
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il 112 (126)
..+.|+.|.|.|+ ..|.+|.|+|+-.... |.|..-..|.-|.|+-++.
T Consensus 172 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~i 225 (392)
T PRK14279 172 SPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--GAFGFSEPCTDCRGTGSII 225 (392)
T ss_pred ccccCCCCccccccCCCCCCCCCCCcceEEEEEEe--cceEEEEecCCCCceeEEe
Confidence 4578999999997 5699999999865554 4444447888888877653
No 7
>PRK14300 chaperone protein DnaJ; Provisional
Probab=95.37 E-value=0.0065 Score=50.55 Aligned_cols=47 Identities=30% Similarity=0.743 Sum_probs=35.4
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
....|+.|+|+|. ..|.+|.|+|.... ..|.|..-..|+-|.|.-.+
T Consensus 144 r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~--~~g~~~~~~~C~~C~G~G~~ 196 (372)
T PRK14300 144 SEVKCDTCHGSGSEKGETVTTCDACSGVGATRM--QQGFFTIEQACHKCQGNGQI 196 (372)
T ss_pred eccccCCCCCcccCCCCCCccCCCccCeEEEEE--eeceEEEEEeCCCCCccceE
Confidence 3478999999995 67999999997654 33666555578888777655
No 8
>PRK14294 chaperone protein DnaJ; Provisional
Probab=95.34 E-value=0.0066 Score=50.27 Aligned_cols=47 Identities=30% Similarity=0.660 Sum_probs=35.8
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
....|+.|+|+|+ ..|.+|.|+|+-.... |.|+--..|.-|.|+..+
T Consensus 143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--G~~~~~~~C~~C~G~G~~ 195 (366)
T PRK14294 143 KLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ--GFFSIRTTCPRCRGMGKV 195 (366)
T ss_pred ecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe--eeEEEEeeCCCCCCcCee
Confidence 4578999999996 4799999999765543 555555678888887765
No 9
>PRK14289 chaperone protein DnaJ; Provisional
Probab=95.28 E-value=0.0076 Score=50.14 Aligned_cols=49 Identities=31% Similarity=0.641 Sum_probs=36.9
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i 111 (126)
..+.|+.|+|+|+ ..|.+|.|+|.-...+ +.|.+..-..|+.|.|.-.+
T Consensus 153 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 209 (386)
T PRK14289 153 KYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKI 209 (386)
T ss_pred eecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccc
Confidence 4578999999995 6799999999877654 23555556778888777654
No 10
>PRK14284 chaperone protein DnaJ; Provisional
Probab=95.24 E-value=0.0085 Score=50.15 Aligned_cols=48 Identities=33% Similarity=0.735 Sum_probs=35.3
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il 112 (126)
....|+.|.|.|+ ..|.+|.|+|+-..-. |.|.--..|.-|.|+-.+.
T Consensus 157 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~~~~~C~~C~G~G~~~ 210 (391)
T PRK14284 157 GYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR--GFFSMASTCPECGGEGRVI 210 (391)
T ss_pred eeccCCCCcccccCCCCCCeecCccCCeeEEEEEe--ceEEEEEECCCCCCCCccc
Confidence 4578999999986 5699999999755443 5666666788887776553
No 11
>PRK14278 chaperone protein DnaJ; Provisional
Probab=95.09 E-value=0.01 Score=49.62 Aligned_cols=49 Identities=31% Similarity=0.662 Sum_probs=34.8
Q ss_pred CceeeccCCCCCc------EecccccCCccCccc--ccCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVD--FFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D--~FnG~fKaG~~CWLCrGkk~i 111 (126)
....|+.|+|.|+ ..|++|.|+|+-... .+.|+|.--..|.-|.|.-++
T Consensus 138 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 194 (378)
T PRK14278 138 TAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEV 194 (378)
T ss_pred eeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCcccee
Confidence 4578999999996 579999999974433 344555544567777766654
No 12
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.04 E-value=0.0083 Score=49.90 Aligned_cols=49 Identities=24% Similarity=0.443 Sum_probs=35.8
Q ss_pred CceeeccCCCCCc------EecccccCCccCccccc--CceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFF--GGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~F--nG~fKaG~~CWLCrGkk~i 111 (126)
....|++|.|.|+ ..|.+|.|+|+-...+. .|+|..-..|+-|.|.-.+
T Consensus 145 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 201 (378)
T PRK14283 145 HTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKI 201 (378)
T ss_pred eeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCcccee
Confidence 4678999999885 56999999999876643 3556555677777666543
No 13
>PRK14301 chaperone protein DnaJ; Provisional
Probab=95.03 E-value=0.0091 Score=49.81 Aligned_cols=48 Identities=33% Similarity=0.729 Sum_probs=36.1
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il 112 (126)
....|+.|+|.|+ ..|.+|.|+|+-.... |.|+--..|..|.|...+.
T Consensus 143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~~~~~C~~C~G~G~~~ 196 (373)
T PRK14301 143 KNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ--GFFQIAVPCPVCRGEGRVI 196 (373)
T ss_pred ecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe--eeEEEEEeCCCCCceeeec
Confidence 4578999999996 5699999999755443 5666667788887776653
No 14
>PRK14288 chaperone protein DnaJ; Provisional
Probab=94.99 E-value=0.01 Score=49.39 Aligned_cols=46 Identities=33% Similarity=0.712 Sum_probs=32.9
Q ss_pred ceeeccCCCCCc-----EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 64 SVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 64 s~~C~dCdGnGa-----i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
-..|..|+|+|+ ..|.+|.|+|+-.... |.|.--..|.-|.|+..+
T Consensus 140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~ 190 (369)
T PRK14288 140 QSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ--GFMSFAQTCGACQGKGKI 190 (369)
T ss_pred eccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe--ceEEEEEecCCCCCCceE
Confidence 358999999996 4699999999765544 444333478887777654
No 15
>PRK14282 chaperone protein DnaJ; Provisional
Probab=94.94 E-value=0.011 Score=49.15 Aligned_cols=49 Identities=31% Similarity=0.718 Sum_probs=35.0
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i 111 (126)
..+.|..|+|.|+ +.|.+|.|+|+-...+ +-|.|.-=..|.-|.|+-.+
T Consensus 151 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 207 (369)
T PRK14282 151 RYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKI 207 (369)
T ss_pred ecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCccee
Confidence 4578999999996 4799999999765543 33555445577777776654
No 16
>PRK14276 chaperone protein DnaJ; Provisional
Probab=94.90 E-value=0.01 Score=49.50 Aligned_cols=50 Identities=34% Similarity=0.749 Sum_probs=37.1
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeecccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~il 112 (126)
....|..|+|.|+ ..|.+|.|+|+=.+.. .-|.|.--..|..|.|+-.+.
T Consensus 145 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 202 (380)
T PRK14276 145 REATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI 202 (380)
T ss_pred ccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc
Confidence 4578999999996 5799999999755443 235555566888888876653
No 17
>PRK14298 chaperone protein DnaJ; Provisional
Probab=94.82 E-value=0.012 Score=49.19 Aligned_cols=49 Identities=31% Similarity=0.608 Sum_probs=34.0
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i 111 (126)
..+.|..|+|.|+ ..|.+|.|+|+-.... -.|.|+--..|.-|.|.-.+
T Consensus 140 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 196 (377)
T PRK14298 140 RAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQV 196 (377)
T ss_pred eeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcc
Confidence 4578999999997 6799999999765443 23445555566666666544
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=94.79 E-value=0.0096 Score=50.04 Aligned_cols=47 Identities=28% Similarity=0.675 Sum_probs=34.8
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
..+.|..|+|.|+ ..|.+|.|+|+-..-. |.|.-=..|.-|.|+-.+
T Consensus 165 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~ 217 (389)
T PRK14295 165 SQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--GGFSLSEPCPDCKGRGLI 217 (389)
T ss_pred ccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--cceEEEEecCCCcceeEE
Confidence 4578999999995 6799999999877665 333333478888777655
No 19
>PRK14285 chaperone protein DnaJ; Provisional
Probab=94.73 E-value=0.015 Score=48.42 Aligned_cols=47 Identities=28% Similarity=0.661 Sum_probs=35.1
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
....|..|.|.|+ ..|.+|.|+|+-.. -.|.|+-=..|.-|.|.-.+
T Consensus 145 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~--~~G~~~~~~~C~~C~G~G~~ 197 (365)
T PRK14285 145 RNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQ--GGGFFRVTTTCPKCYGNGKI 197 (365)
T ss_pred ecccCCCCCCcccCCCCCCccCCCccCceeEEe--cCceeEEeeecCCCCCcccc
Confidence 3578999999995 57999999997664 23555555677777777665
No 20
>PRK14280 chaperone protein DnaJ; Provisional
Probab=94.70 E-value=0.012 Score=48.95 Aligned_cols=49 Identities=33% Similarity=0.655 Sum_probs=35.6
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i 111 (126)
.-+.|++|.|+|+ ..|.+|.|+|+=.... .-|.|.--..|+.|.|+-.+
T Consensus 142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 198 (376)
T PRK14280 142 KEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQE 198 (376)
T ss_pred eeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCce
Confidence 4578999999995 5799999999754443 22445445588888887665
No 21
>PRK14296 chaperone protein DnaJ; Provisional
Probab=94.62 E-value=0.014 Score=48.80 Aligned_cols=49 Identities=31% Similarity=0.669 Sum_probs=33.9
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccccCc--eeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGG--QFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG--~fKaG~~CWLCrGkk~i 111 (126)
....|..|+|+|+ ..|..|.|+|+-....-.| .|+.=..|..|.|+.++
T Consensus 148 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~ 204 (372)
T PRK14296 148 LLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKI 204 (372)
T ss_pred eeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCccee
Confidence 4578999999996 4699999999876664223 23333457777666554
No 22
>PRK14277 chaperone protein DnaJ; Provisional
Probab=94.60 E-value=0.013 Score=49.02 Aligned_cols=49 Identities=27% Similarity=0.482 Sum_probs=34.2
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i 111 (126)
....|+.|+|.|+ ..|.+|.|+|+-..-. .-|.+..-..|.-|.|+-.+
T Consensus 154 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 210 (386)
T PRK14277 154 RFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKI 210 (386)
T ss_pred eeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceee
Confidence 4578999999996 5699999999755443 23444444577777776554
No 23
>PRK14287 chaperone protein DnaJ; Provisional
Probab=94.56 E-value=0.016 Score=48.40 Aligned_cols=49 Identities=31% Similarity=0.611 Sum_probs=33.0
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i 111 (126)
....|+.|.|.|+ ..|.+|.|+|+-.+.. .-|+|..-..|.-|.|+-.+
T Consensus 137 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 193 (371)
T PRK14287 137 REETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKI 193 (371)
T ss_pred eeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcc
Confidence 4578999999994 5799999999655443 22444444466666666544
No 24
>PRK14297 chaperone protein DnaJ; Provisional
Probab=94.55 E-value=0.014 Score=48.56 Aligned_cols=49 Identities=33% Similarity=0.674 Sum_probs=36.1
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i 111 (126)
....|+.|.|.|+ ..|.+|.|+|+=.+.+ ..|.|..-..|.-|.|+..+
T Consensus 147 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 203 (380)
T PRK14297 147 RNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKV 203 (380)
T ss_pred eeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceE
Confidence 4578999999996 5799999999654443 34556556678888887655
No 25
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=94.50 E-value=0.026 Score=36.68 Aligned_cols=10 Identities=40% Similarity=1.292 Sum_probs=4.5
Q ss_pred eeeccCCCCC
Q 033141 65 VVCADCDGNG 74 (126)
Q Consensus 65 ~~C~dCdGnG 74 (126)
..|+.|.|.|
T Consensus 16 ~~C~~C~G~G 25 (66)
T PF00684_consen 16 KTCPQCNGSG 25 (66)
T ss_dssp EE-TTSSSSS
T ss_pred cCCcCCCCee
Confidence 3455555555
No 26
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=94.33 E-value=0.032 Score=41.19 Aligned_cols=29 Identities=34% Similarity=0.967 Sum_probs=23.0
Q ss_pred cCceeeccCCCCCcEecccccCCccCccc
Q 033141 62 RNSVVCADCDGNGAVLCSQCKGSGVNAVD 90 (126)
Q Consensus 62 p~s~~C~dCdGnGai~C~QCkG~GvN~~D 90 (126)
.....|+.|+|.|.++|..|+|.|+-..-
T Consensus 73 q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~ 101 (111)
T PLN03165 73 KEVSKCINCDGAGSLTCTTCQGSGIQPRY 101 (111)
T ss_pred EEEEECCCCCCcceeeCCCCCCCEEEeee
Confidence 34678888888888888888888886653
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=94.21 E-value=0.021 Score=48.03 Aligned_cols=49 Identities=33% Similarity=0.695 Sum_probs=34.6
Q ss_pred CceeeccCCCCCc-----EecccccCCccCccc--ccCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA-----VLCSQCKGSGVNAVD--FFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa-----i~C~QCkG~GvN~~D--~FnG~fKaG~~CWLCrGkk~i 111 (126)
....|+.|+|.|+ ..|.+|.|+|+-..- .+.|+|.--..|.-|.|+-++
T Consensus 162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 217 (397)
T PRK14281 162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRV 217 (397)
T ss_pred eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeee
Confidence 4578999999996 469999999964332 344555445567777776655
No 28
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=94.11 E-value=0.022 Score=46.60 Aligned_cols=49 Identities=29% Similarity=0.603 Sum_probs=35.2
Q ss_pred CceeeccCCCCCc------EecccccCCccCccccc--CceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFF--GGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~F--nG~fKaG~~CWLCrGkk~i 111 (126)
....|..|+|.|+ ..|.+|.|+|+-..... -|.+..-..|.-|.|+..+
T Consensus 142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 198 (354)
T TIGR02349 142 RKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKI 198 (354)
T ss_pred cCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCccee
Confidence 4578999999994 57999999997665532 2344444577777777654
No 29
>PRK14292 chaperone protein DnaJ; Provisional
Probab=93.92 E-value=0.029 Score=46.39 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=36.4
Q ss_pred CceeeccCCCCCc-------EecccccCCccCcccc--cCceeccCCeEeecccccccc
Q 033141 63 NSVVCADCDGNGA-------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 63 ~s~~C~dCdGnGa-------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~il 112 (126)
....|+.|+|.|+ ..|..|.|+|.-..-+ +.|.+..-..|+.|.|..++.
T Consensus 138 r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 196 (371)
T PRK14292 138 RLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII 196 (371)
T ss_pred eeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec
Confidence 4578999999984 5799999999654332 336776667888887776653
No 30
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=0.034 Score=48.23 Aligned_cols=51 Identities=33% Similarity=0.709 Sum_probs=40.8
Q ss_pred ccCceeeccCCCCCc------EecccccCCcc-CcccccCceeccCCeEeecccccccc
Q 033141 61 KRNSVVCADCDGNGA------VLCSQCKGSGV-NAVDFFGGQFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 61 kp~s~~C~dCdGnGa------i~C~QCkG~Gv-N~~D~FnG~fKaG~~CWLCrGkk~il 112 (126)
-+....|..|+|.|| +.|.+|.|+|+ ..+.+. |.|..=..|--|.|+-+|.
T Consensus 139 ~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~-g~~~~~~~C~~C~G~G~~i 196 (371)
T COG0484 139 VTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT-GFFSFQQTCPTCNGTGKII 196 (371)
T ss_pred cceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee-eEEEEEEECCCCccceeEC
Confidence 347789999999975 57999999996 555555 8888888888888887765
No 31
>PRK14291 chaperone protein DnaJ; Provisional
Probab=92.84 E-value=0.042 Score=45.91 Aligned_cols=45 Identities=36% Similarity=0.804 Sum_probs=27.8
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSS 109 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk 109 (126)
....|..|+|.|+ ..|.+|.|+|+=... +|.|.-=..|--|.|+.
T Consensus 155 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~g~~~~~~~C~~C~G~G 205 (382)
T PRK14291 155 RYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQR--GGFFRISQTCPTCGGEG 205 (382)
T ss_pred eeccCCCCccccCCCCCCCccCCCCCCceEEEEe--cceEEEEecCCCCCCce
Confidence 4578999999884 568888888864443 23333333444444444
No 32
>PRK14293 chaperone protein DnaJ; Provisional
Probab=92.84 E-value=0.043 Score=45.68 Aligned_cols=48 Identities=31% Similarity=0.608 Sum_probs=29.2
Q ss_pred CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeecccccc
Q 033141 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQ 110 (126)
Q Consensus 63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~ 110 (126)
....|+.|+|.|+ ..|.+|.|+|+=..-. .-|.|..-..|+-|.|.-.
T Consensus 142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~ 197 (374)
T PRK14293 142 HLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQ 197 (374)
T ss_pred ccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCccee
Confidence 4578999999886 4599999999533322 1233333345555555444
No 33
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=92.77 E-value=0.055 Score=42.84 Aligned_cols=23 Identities=39% Similarity=1.057 Sum_probs=21.0
Q ss_pred ceeeccCCCCCcEe-----cccccCCcc
Q 033141 64 SVVCADCDGNGAVL-----CSQCKGSGV 86 (126)
Q Consensus 64 s~~C~dCdGnGai~-----C~QCkG~Gv 86 (126)
+..|+.|.|.|.++ |..|.|+|.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~ 126 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGR 126 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccE
Confidence 78999999999876 999999995
No 34
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=91.43 E-value=0.099 Score=45.01 Aligned_cols=24 Identities=46% Similarity=1.265 Sum_probs=20.3
Q ss_pred CceeeccCCCCCc-----EecccccCCcc
Q 033141 63 NSVVCADCDGNGA-----VLCSQCKGSGV 86 (126)
Q Consensus 63 ~s~~C~dCdGnGa-----i~C~QCkG~Gv 86 (126)
..++|..|+|.|+ ..|..|.|+|+
T Consensus 149 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 177 (421)
T PTZ00037 149 KDVICANCEGHGGPKDAFVDCKLCNGQGI 177 (421)
T ss_pred ccccccccCCCCCCCCCCccCCCCCCCCe
Confidence 4578999999996 46999999996
No 35
>PRK10767 chaperone protein DnaJ; Provisional
Probab=90.77 E-value=0.12 Score=42.72 Aligned_cols=39 Identities=31% Similarity=0.711 Sum_probs=28.8
Q ss_pred ceeeccCCCCCcEe-----------cccccCCccCcccccCceeccCCeEeecccccccc
Q 033141 64 SVVCADCDGNGAVL-----------CSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 64 s~~C~dCdGnGai~-----------C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il 112 (126)
...|+.|.|.|.+. |.+|.|.|.=. -..|.-|.|++-+.
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~ 208 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII----------KDPCKKCHGQGRVE 208 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC----------CCCCCCCCCCceEe
Confidence 35899999999764 99999988532 25588888876543
No 36
>PRK14298 chaperone protein DnaJ; Provisional
Probab=87.74 E-value=0.34 Score=40.73 Aligned_cols=38 Identities=32% Similarity=0.754 Sum_probs=26.6
Q ss_pred eeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141 65 VVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 65 ~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il 112 (126)
..|+.|.|.|.+ .|..|.|+|.=.. ..|--|.|++.+.
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v~ 211 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE----------SPCPVCSGTGKVR 211 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC----------CCCCCCCCccEEE
Confidence 579999999854 5888888886321 3477777766543
No 37
>PRK14283 chaperone protein DnaJ; Provisional
Probab=87.46 E-value=0.44 Score=39.79 Aligned_cols=40 Identities=28% Similarity=0.663 Sum_probs=28.8
Q ss_pred ceeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccccccc
Q 033141 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFS 113 (126)
Q Consensus 64 s~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il~ 113 (126)
...|+.|.|.|.+ .|.+|.|+|.=. -..|--|.|+..+..
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~~ 217 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV----------EKPCSNCHGKGVVRE 217 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec----------CCCCCCCCCceeecc
Confidence 4679999999875 499999988431 245888888765433
No 38
>PRK14291 chaperone protein DnaJ; Provisional
Probab=87.02 E-value=0.32 Score=40.79 Aligned_cols=37 Identities=32% Similarity=0.881 Sum_probs=28.2
Q ss_pred ceeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 64 s~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
-..|+.|.|.|.+ .|..|.|+|+ . -..|--|.|+.-+
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~--~---------~~~C~~C~G~g~v 220 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV--L---------REPCSKCNGRGLV 220 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceE--E---------ccCCCCCCCCceE
Confidence 4679999999965 6999999995 2 1458888886644
No 39
>PRK14286 chaperone protein DnaJ; Provisional
Probab=86.79 E-value=0.31 Score=40.78 Aligned_cols=23 Identities=39% Similarity=1.172 Sum_probs=15.8
Q ss_pred eeeccCCCCCcE-----------ecccccCCccC
Q 033141 65 VVCADCDGNGAV-----------LCSQCKGSGVN 87 (126)
Q Consensus 65 ~~C~dCdGnGai-----------~C~QCkG~GvN 87 (126)
..|+.|.|.|.+ .|..|.|+|.-
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~ 201 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTV 201 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeE
Confidence 568888888754 47777777643
No 40
>PRK14287 chaperone protein DnaJ; Provisional
Probab=86.46 E-value=0.35 Score=40.47 Aligned_cols=37 Identities=30% Similarity=0.881 Sum_probs=26.7
Q ss_pred eeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 65 VVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 65 ~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
..|+.|.|.|.+ .|..|.|.|.-.. ..|-+|.|+..+
T Consensus 156 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 207 (371)
T PRK14287 156 ETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK----------QKCATCGGKGKV 207 (371)
T ss_pred cccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc----------ccCCCCCCeeEE
Confidence 579999999853 5888988886431 348888876644
No 41
>PRK14284 chaperone protein DnaJ; Provisional
Probab=85.80 E-value=0.52 Score=39.61 Aligned_cols=38 Identities=32% Similarity=0.801 Sum_probs=28.3
Q ss_pred ceeeccCCCCCc-----------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 64 SVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 64 s~~C~dCdGnGa-----------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
...|+.|.|.|. ..|.+|.|+|.=.. ..|--|.|+..+
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 223 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT----------DPCSVCRGQGRI 223 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC----------CcCCCCCCccee
Confidence 468999999997 47999999985322 458888886644
No 42
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=85.74 E-value=0.41 Score=41.62 Aligned_cols=26 Identities=35% Similarity=0.988 Sum_probs=16.7
Q ss_pred CceeeccCCCCCcEe---cccccCCccCc
Q 033141 63 NSVVCADCDGNGAVL---CSQCKGSGVNA 88 (126)
Q Consensus 63 ~s~~C~dCdGnGai~---C~QCkG~GvN~ 88 (126)
....|+.|.|.|.++ |.+|+|.|+..
T Consensus 182 ~~~~C~~C~G~G~~i~~pC~~C~G~G~v~ 210 (371)
T COG0484 182 FQQTCPTCNGTGKIIKDPCGKCKGKGRVK 210 (371)
T ss_pred EEEECCCCccceeECCCCCCCCCCCCeEe
Confidence 345677777777553 77777777643
No 43
>PRK14288 chaperone protein DnaJ; Provisional
Probab=84.61 E-value=0.61 Score=39.02 Aligned_cols=36 Identities=31% Similarity=0.816 Sum_probs=25.9
Q ss_pred ceeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeeccccc
Q 033141 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSS 109 (126)
Q Consensus 64 s~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk 109 (126)
-..|+.|.|.|.+ .|.+|.|+|.-. -..|--|.|++
T Consensus 156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g 202 (369)
T PRK14288 156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII----------KTPCQACKGKT 202 (369)
T ss_pred CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc----------cccCccCCCcc
Confidence 4579999999965 499999888532 23477777764
No 44
>PRK14277 chaperone protein DnaJ; Provisional
Probab=84.24 E-value=0.5 Score=39.67 Aligned_cols=38 Identities=37% Similarity=0.904 Sum_probs=27.6
Q ss_pred ceeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 64 s~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
...|+.|.|.|.+ .|.+|.|+|.-.. ..|--|.|++.+
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 224 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT----------DPCNKCGGTGRI 224 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc----------CCCCCCCCCcEE
Confidence 3679999999865 5888888885421 348888887654
No 45
>PRK14282 chaperone protein DnaJ; Provisional
Probab=83.59 E-value=0.66 Score=38.64 Aligned_cols=35 Identities=40% Similarity=1.062 Sum_probs=23.3
Q ss_pred eeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccc
Q 033141 65 VVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSS 109 (126)
Q Consensus 65 ~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk 109 (126)
..|+.|.|.|.+ .|..|.|.|.-. -..|--|.|+.
T Consensus 170 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g 219 (369)
T PRK14282 170 VTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP----------GEYCHECGGSG 219 (369)
T ss_pred cCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC----------CCCCCCCCCce
Confidence 578888888865 477777777432 24466676665
No 46
>PRK14285 chaperone protein DnaJ; Provisional
Probab=82.99 E-value=0.72 Score=38.54 Aligned_cols=37 Identities=30% Similarity=0.795 Sum_probs=23.5
Q ss_pred eeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 65 VVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 65 ~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
..|+.|.|.|.+ .|.+|.|+|.-. -..|--|.|+..+
T Consensus 164 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 211 (365)
T PRK14285 164 SICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII----------SNPCKSCKGKGSL 211 (365)
T ss_pred ccCCCccCceeEEecCceeEEeeecCCCCCccccc----------CCCCCCCCCCCEE
Confidence 568888888754 577777777432 1346666666533
No 47
>PRK14296 chaperone protein DnaJ; Provisional
Probab=82.93 E-value=0.72 Score=38.71 Aligned_cols=12 Identities=42% Similarity=1.207 Sum_probs=8.0
Q ss_pred eeeccCCCCCcE
Q 033141 65 VVCADCDGNGAV 76 (126)
Q Consensus 65 ~~C~dCdGnGai 76 (126)
..|+.|.|.|.+
T Consensus 167 ~~C~~C~G~G~~ 178 (372)
T PRK14296 167 HICNNCHGTGEV 178 (372)
T ss_pred ccCCCCCCCceE
Confidence 457777777754
No 48
>PRK14300 chaperone protein DnaJ; Provisional
Probab=82.37 E-value=0.81 Score=38.24 Aligned_cols=39 Identities=28% Similarity=0.715 Sum_probs=25.6
Q ss_pred ceeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 64 s~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il 112 (126)
...|+.|.|.|.+ .|..|.|.|.=. -..|--|.|+.-+.
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~ 211 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII----------KNPCKKCHGMGRYH 211 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe----------CCCCCCCCCceEEE
Confidence 3578888888865 477787777432 14477777765543
No 49
>PRK14292 chaperone protein DnaJ; Provisional
Probab=82.36 E-value=0.76 Score=38.13 Aligned_cols=40 Identities=33% Similarity=0.827 Sum_probs=28.3
Q ss_pred ceeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccccccc
Q 033141 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFS 113 (126)
Q Consensus 64 s~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il~ 113 (126)
-..|+.|.|.|.+ .|..|.|.|.-. =..|--|.|+..+..
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~~ 211 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII----------TDPCTVCRGRGRTLK 211 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec----------CCCCCCCCCceEEee
Confidence 3679999998865 488888888642 156888888765543
No 50
>PRK14293 chaperone protein DnaJ; Provisional
Probab=82.14 E-value=1.2 Score=37.27 Aligned_cols=38 Identities=34% Similarity=0.864 Sum_probs=24.5
Q ss_pred ceeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 64 s~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
...|+.|.|+|.+ .|..|.|.|.= .-..|.-|.|+.-+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----------~~~~C~~C~G~g~v 212 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV----------IEDPCDACGGQGVK 212 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeE----------eccCCCCCCCCccc
Confidence 3578888888853 47777777741 12347777776544
No 51
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=82.13 E-value=0.85 Score=37.43 Aligned_cols=11 Identities=36% Similarity=1.066 Sum_probs=6.9
Q ss_pred eeeccCCCCCc
Q 033141 65 VVCADCDGNGA 75 (126)
Q Consensus 65 ~~C~dCdGnGa 75 (126)
..|+.|.|+|.
T Consensus 161 ~~C~~C~G~G~ 171 (354)
T TIGR02349 161 KTCPTCGGTGQ 171 (354)
T ss_pred ccCCCCCCeeE
Confidence 45666666663
No 52
>PRK14279 chaperone protein DnaJ; Provisional
Probab=82.06 E-value=0.6 Score=39.44 Aligned_cols=38 Identities=32% Similarity=0.868 Sum_probs=27.2
Q ss_pred ceeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 64 s~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
-..|+.|.|.|.+ .|..|.|+|.-. -..|--|.|+.-+
T Consensus 190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i----------~~~C~~C~G~g~v 238 (392)
T PRK14279 190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII----------EDPCEECKGTGVT 238 (392)
T ss_pred CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe----------CCcCCCCCCCeEE
Confidence 3679999999865 588898888532 2347777776543
No 53
>PRK14289 chaperone protein DnaJ; Provisional
Probab=81.35 E-value=0.85 Score=38.14 Aligned_cols=38 Identities=34% Similarity=0.810 Sum_probs=23.3
Q ss_pred ceeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 64 s~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
...|+.|.|.|.+ .|.+|.|+|.=.. ..|--|.|++-+
T Consensus 171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 223 (386)
T PRK14289 171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK----------KKCKKCGGEGIV 223 (386)
T ss_pred CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC----------cCCCCCCCCcEE
Confidence 3668888887765 4777777764321 336666666543
No 54
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=81.18 E-value=0.93 Score=39.16 Aligned_cols=10 Identities=50% Similarity=1.172 Sum_probs=5.3
Q ss_pred eeeccCCCCC
Q 033141 65 VVCADCDGNG 74 (126)
Q Consensus 65 ~~C~dCdGnG 74 (126)
..|+.|.|.|
T Consensus 167 ~~C~~C~G~G 176 (421)
T PTZ00037 167 VDCKLCNGQG 176 (421)
T ss_pred ccCCCCCCCC
Confidence 3455555555
No 55
>PRK14290 chaperone protein DnaJ; Provisional
Probab=80.83 E-value=1.6 Score=36.27 Aligned_cols=39 Identities=26% Similarity=0.727 Sum_probs=23.4
Q ss_pred CceeeccCCCCCc---------------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 63 NSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 63 ~s~~C~dCdGnGa---------------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
....|+.|.|.|. ..|.+|.|.|.= .-..|--|.|++.+
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~----------~~~~C~~C~G~g~v 217 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI----------PEEKCPRCNGTGTV 217 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE----------ccCCCCCCCCceeE
Confidence 3456888888774 357777777642 12346666665544
No 56
>PRK14278 chaperone protein DnaJ; Provisional
Probab=80.80 E-value=1 Score=37.88 Aligned_cols=36 Identities=36% Similarity=0.916 Sum_probs=22.7
Q ss_pred eeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeecccccc
Q 033141 65 VVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQ 110 (126)
Q Consensus 65 ~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~ 110 (126)
..|+.|.|.|.+ .|..|.|+|.=. -..|--|.|+..
T Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~ 207 (378)
T PRK14278 157 VTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI----------PDPCHECAGDGR 207 (378)
T ss_pred eecCCccCceEEEEEEeccceeEEEEEECCCCCccceee----------CCCCCCCCCcee
Confidence 568888888753 477777777421 134666666643
No 57
>PRK14280 chaperone protein DnaJ; Provisional
Probab=80.39 E-value=1.1 Score=37.50 Aligned_cols=11 Identities=36% Similarity=1.108 Sum_probs=7.0
Q ss_pred eeeccCCCCCc
Q 033141 65 VVCADCDGNGA 75 (126)
Q Consensus 65 ~~C~dCdGnGa 75 (126)
..|+.|.|.|.
T Consensus 161 ~~C~~C~G~G~ 171 (376)
T PRK14280 161 ETCSHCGGSGQ 171 (376)
T ss_pred ccCCCCCCEEE
Confidence 45666666664
No 58
>PRK14297 chaperone protein DnaJ; Provisional
Probab=80.29 E-value=0.87 Score=38.07 Aligned_cols=36 Identities=33% Similarity=0.848 Sum_probs=25.7
Q ss_pred ceeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccc
Q 033141 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSS 109 (126)
Q Consensus 64 s~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk 109 (126)
...|+.|.|.|.+ .|..|.|.|.=. -..|--|.|+.
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g 215 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI----------EDPCNKCHGKG 215 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc----------CCCCCCCCCCe
Confidence 4679999999855 588888888532 14577777765
No 59
>PRK14294 chaperone protein DnaJ; Provisional
Probab=79.73 E-value=1.1 Score=37.34 Aligned_cols=22 Identities=41% Similarity=1.180 Sum_probs=14.8
Q ss_pred eeeccCCCCCcE-----------ecccccCCcc
Q 033141 65 VVCADCDGNGAV-----------LCSQCKGSGV 86 (126)
Q Consensus 65 ~~C~dCdGnGai-----------~C~QCkG~Gv 86 (126)
..|+.|.|.|.+ .|..|.|.|.
T Consensus 162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~ 194 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGK 194 (366)
T ss_pred ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCe
Confidence 567777777754 4666766665
No 60
>PRK14281 chaperone protein DnaJ; Provisional
Probab=78.47 E-value=1.7 Score=36.82 Aligned_cols=38 Identities=32% Similarity=0.752 Sum_probs=25.2
Q ss_pred ceeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 64 s~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
-..|+.|.|.|.+ .|..|.|.|.-. -..|--|.|++-+
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 231 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV----------KDRCPACYGEGIK 231 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee----------CCCCCCCCCCccE
Confidence 3578888888853 488888887432 2347777776544
No 61
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=77.93 E-value=1.6 Score=37.76 Aligned_cols=30 Identities=37% Similarity=0.906 Sum_probs=21.9
Q ss_pred CceeeccCCCCC-----cEecccccCCccCccccc
Q 033141 63 NSVVCADCDGNG-----AVLCSQCKGSGVNAVDFF 92 (126)
Q Consensus 63 ~s~~C~dCdGnG-----ai~C~QCkG~GvN~~D~F 92 (126)
...+|+-|+|-| +..|+.|.|+|+=+.-+.
T Consensus 126 ~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~ 160 (337)
T KOG0712|consen 126 RNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQ 160 (337)
T ss_pred cCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEe
Confidence 557888888887 345888888888665543
No 62
>PRK14301 chaperone protein DnaJ; Provisional
Probab=77.40 E-value=1.3 Score=37.06 Aligned_cols=22 Identities=41% Similarity=1.090 Sum_probs=14.8
Q ss_pred eeeccCCCCCcE-----------ecccccCCcc
Q 033141 65 VVCADCDGNGAV-----------LCSQCKGSGV 86 (126)
Q Consensus 65 ~~C~dCdGnGai-----------~C~QCkG~Gv 86 (126)
..|+.|.|.|.+ .|.+|.|.|.
T Consensus 162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~ 194 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGR 194 (373)
T ss_pred cccCCccCeeEEEEEeeeEEEEEeCCCCCceee
Confidence 568888887753 4666666664
No 63
>PRK14276 chaperone protein DnaJ; Provisional
Probab=76.22 E-value=1.5 Score=36.70 Aligned_cols=11 Identities=45% Similarity=1.271 Sum_probs=7.0
Q ss_pred eeeccCCCCCc
Q 033141 65 VVCADCDGNGA 75 (126)
Q Consensus 65 ~~C~dCdGnGa 75 (126)
..|+.|.|.|.
T Consensus 164 ~~C~~C~G~G~ 174 (380)
T PRK14276 164 VTCGKCHGSGV 174 (380)
T ss_pred ccCCCCCCeeE
Confidence 45777777664
No 64
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=75.38 E-value=1.4 Score=39.31 Aligned_cols=41 Identities=27% Similarity=0.694 Sum_probs=28.4
Q ss_pred CceeeccCCCCCcEecccccCCccCcccccCceeccCCeEeeccccccccceee
Q 033141 63 NSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFSLIQ 116 (126)
Q Consensus 63 ~s~~C~dCdGnGai~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il~~~~ 116 (126)
.+.+|..|.|.|-..|+-|+|.|- -.|--|.|.+.+|..+|
T Consensus 233 t~~~C~~C~G~G~~~C~tC~grG~-------------k~C~TC~gtgsll~~t~ 273 (406)
T KOG2813|consen 233 THDLCYMCHGRGIKECHTCKGRGK-------------KPCTTCSGTGSLLNYTR 273 (406)
T ss_pred ccchhhhccCCCcccCCcccCCCC-------------cccccccCccceeeeEE
Confidence 456788888888888888888774 24667777666665544
No 65
>PRK14295 chaperone protein DnaJ; Provisional
Probab=74.12 E-value=1.8 Score=36.61 Aligned_cols=21 Identities=52% Similarity=1.273 Sum_probs=13.3
Q ss_pred eeeccCCCCCcE-----------ecccccCCc
Q 033141 65 VVCADCDGNGAV-----------LCSQCKGSG 85 (126)
Q Consensus 65 ~~C~dCdGnGai-----------~C~QCkG~G 85 (126)
..|+.|.|.|.+ .|.+|.|.|
T Consensus 184 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 215 (389)
T PRK14295 184 RVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRG 215 (389)
T ss_pred cCCCCCCCEeEEEEEecceEEEEecCCCccee
Confidence 467777777753 466666655
No 66
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=73.84 E-value=2 Score=40.62 Aligned_cols=45 Identities=29% Similarity=0.735 Sum_probs=30.9
Q ss_pred eeeccCCCCCcE-----ecccccCCccCcccccC----ce--------ecc-CCeEeeccccccc
Q 033141 65 VVCADCDGNGAV-----LCSQCKGSGVNAVDFFG----GQ--------FKA-GDSCWLCGQSSQH 111 (126)
Q Consensus 65 ~~C~dCdGnGai-----~C~QCkG~GvN~~D~Fn----G~--------fKa-G~~CWLCrGkk~i 111 (126)
..|+.|+|.|-+ .|.-|.|+|-- |-|+ ++ |-. |--|-.|+||-.+
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~--~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V 65 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFS--DDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTV 65 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccc--cccChhhhhhhhhccccccccCCCCCCeeccceeE
Confidence 579999999965 59999999964 4333 22 222 5578888777543
No 67
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=71.20 E-value=2.6 Score=37.60 Aligned_cols=82 Identities=28% Similarity=0.476 Sum_probs=47.6
Q ss_pred CCCCcccccccc-CCCCCccCcceeEEEEecccCCCcccCc---eeeccCCCCCcEecccccCCccCccc-----cc---
Q 033141 25 SSSDSKDHLIND-TPKTTKVNRLHSIRVKAAANNGNTKRNS---VVCADCDGNGAVLCSQCKGSGVNAVD-----FF--- 92 (126)
Q Consensus 25 ~s~~~k~~~vn~-~~~~s~~~~~~sl~~KA~~~~~~~kp~s---~~C~dCdGnGai~C~QCkG~GvN~~D-----~F--- 92 (126)
-+++++.++.+. +......+|+.-+++-.++ +---|+| .-|-.|-|.|+..|+-|-|+|-|+-- ||
T Consensus 146 ~~~dG~~hg~~prlw~~d~~~~gp~mf~~~~~--~~~vphs~~v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc 223 (406)
T KOG2813|consen 146 CNSDGTIHGFHPRLWGTDKCSRGPGMFSGVAH--PAVVPHSMIVTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSC 223 (406)
T ss_pred CCcCCcccccCccccccccccCCCCccccccc--ceeccchHhhhhhhcccCCCceeccCcCCCCccccccCcceecccc
Confidence 344444444432 3333344455555544444 2222332 35999999999999999999966543 33
Q ss_pred Cc----eeccCCeEeecccc
Q 033141 93 GG----QFKAGDSCWLCGQS 108 (126)
Q Consensus 93 nG----~fKaG~~CWLCrGk 108 (126)
-| +.+.-++|.+|-|+
T Consensus 224 ~G~~~~k~gt~~~C~~C~G~ 243 (406)
T KOG2813|consen 224 TGVPPPKIGTHDLCYMCHGR 243 (406)
T ss_pred cCCCCCCCCccchhhhccCC
Confidence 12 12334688888665
No 68
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=62.51 E-value=4.2 Score=35.19 Aligned_cols=28 Identities=32% Similarity=0.843 Sum_probs=21.6
Q ss_pred CceeeccCCCCCcE-----ecccccCCccCccc
Q 033141 63 NSVVCADCDGNGAV-----LCSQCKGSGVNAVD 90 (126)
Q Consensus 63 ~s~~C~dCdGnGai-----~C~QCkG~GvN~~D 90 (126)
-..+|.+|+|.|-. .|..|.|.++=.+.
T Consensus 169 ~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~k 201 (337)
T KOG0712|consen 169 PQLVCDSCNGSGETISLKDRCKTCSGAKVVREK 201 (337)
T ss_pred ceeEeccCCCccccccccccCcccccchhhhhh
Confidence 35788888888888 88888888875443
No 69
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=59.44 E-value=6 Score=29.85 Aligned_cols=24 Identities=42% Similarity=0.811 Sum_probs=20.6
Q ss_pred ceeeccCCCCCcEecccccCCccC
Q 033141 64 SVVCADCDGNGAVLCSQCKGSGVN 87 (126)
Q Consensus 64 s~~C~dCdGnGai~C~QCkG~GvN 87 (126)
...|..|-|-+.++|..|.|+==.
T Consensus 99 ~~~C~~Cgg~rfv~C~~C~Gs~k~ 122 (147)
T cd03031 99 GGVCEGCGGARFVPCSECNGSCKV 122 (147)
T ss_pred CCCCCCCCCcCeEECCCCCCcceE
Confidence 457999999999999999998543
No 70
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=57.38 E-value=6.2 Score=37.53 Aligned_cols=59 Identities=27% Similarity=0.596 Sum_probs=42.8
Q ss_pred cCceeeccCCCCCcE----ecccccCCccCcccccCceeccC---CeEeeccccccccceeeeccCCcee
Q 033141 62 RNSVVCADCDGNGAV----LCSQCKGSGVNAVDFFGGQFKAG---DSCWLCGQSSQHFSLIQYQPHSSCV 124 (126)
Q Consensus 62 p~s~~C~dCdGnGai----~C~QCkG~GvN~~D~FnG~fKaG---~~CWLCrGkk~il~~~~~~~~~~~~ 124 (126)
-..+.|+.|+|.|.+ .|.-|.|+|=-...---|+...+ .+|--|+.+-+ |-|--+.+|-
T Consensus 51 ~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~~----~vy~l~~~c~ 116 (715)
T COG1107 51 SFEIPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRRKPK----IVYVLDNSCT 116 (715)
T ss_pred cCCCCCCeeccceeEEEEeecccCCCceeEEeeccccceecCcccccChhHhhCCc----eeEEeccccc
Confidence 346899999999976 59999999966666555554444 27999998877 3444455553
No 71
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.24 E-value=11 Score=36.16 Aligned_cols=12 Identities=33% Similarity=1.024 Sum_probs=7.7
Q ss_pred eeeccCCCCCcE
Q 033141 65 VVCADCDGNGAV 76 (126)
Q Consensus 65 ~~C~dCdGnGai 76 (126)
-.|+.|.|.|.+
T Consensus 737 G~C~~C~G~G~~ 748 (924)
T TIGR00630 737 GRCEACQGDGVI 748 (924)
T ss_pred CCCCCCccceEE
Confidence 457777777644
No 72
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.30 E-value=18 Score=30.98 Aligned_cols=22 Identities=41% Similarity=0.943 Sum_probs=20.2
Q ss_pred CceeeccCCCCCcEecccccCC
Q 033141 63 NSVVCADCDGNGAVLCSQCKGS 84 (126)
Q Consensus 63 ~s~~C~dCdGnGai~C~QCkG~ 84 (126)
.+.+|..|.|-+.++|+-|.|+
T Consensus 228 ~~~~C~~CGg~rFlpC~~C~GS 249 (281)
T KOG2824|consen 228 GGGVCESCGGARFLPCSNCHGS 249 (281)
T ss_pred CCCcCCCcCCcceEecCCCCCc
Confidence 4589999999999999999997
No 73
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=37.79 E-value=16 Score=25.97 Aligned_cols=28 Identities=36% Similarity=0.789 Sum_probs=21.6
Q ss_pred ceeeccCCCCCc----------------EecccccCCccCcccc
Q 033141 64 SVVCADCDGNGA----------------VLCSQCKGSGVNAVDF 91 (126)
Q Consensus 64 s~~C~dCdGnGa----------------i~C~QCkG~GvN~~D~ 91 (126)
|..|..|.|.|+ +.|..|.|.|+..+|.
T Consensus 5 S~~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~sr~~~ 48 (95)
T PF03589_consen 5 SDSCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYSRLPS 48 (95)
T ss_pred CCCcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCCCCCh
Confidence 456778888773 5699999999998773
No 74
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=36.64 E-value=21 Score=30.73 Aligned_cols=18 Identities=56% Similarity=1.422 Sum_probs=14.6
Q ss_pred eeeccCCCCCcEecccccCCc
Q 033141 65 VVCADCDGNGAVLCSQCKGSG 85 (126)
Q Consensus 65 ~~C~dCdGnGai~C~QCkG~G 85 (126)
+.|..|+|.| |..||++|
T Consensus 261 v~~~~~~g~g---c~~ck~~~ 278 (339)
T PRK00488 261 VSCFKCGGKG---CRVCKGTG 278 (339)
T ss_pred EEEeccCCCc---ccccCCCC
Confidence 6788888877 77888887
No 75
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.47 E-value=19 Score=34.54 Aligned_cols=32 Identities=25% Similarity=0.547 Sum_probs=24.7
Q ss_pred EecccccCCccCccc-ccCceeccCCeEeeccccc
Q 033141 76 VLCSQCKGSGVNAVD-FFGGQFKAGDSCWLCGQSS 109 (126)
Q Consensus 76 i~C~QCkG~GvN~~D-~FnG~fKaG~~CWLCrGkk 109 (126)
-.|..|+|.|+=.+| .|-.-. =..|-.|.|+|
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~--~~~C~~C~G~R 769 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDV--YVPCEVCKGKR 769 (924)
T ss_pred CCCCCCccceEEEEEccCCCCc--ccCCCCcCCce
Confidence 359999999998887 453333 35899999986
No 76
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=35.57 E-value=13 Score=32.99 Aligned_cols=23 Identities=43% Similarity=1.132 Sum_probs=19.2
Q ss_pred CccCcccccCceeccCCeEeeccc
Q 033141 84 SGVNAVDFFGGQFKAGDSCWLCGQ 107 (126)
Q Consensus 84 ~GvN~~D~FnG~fKaG~~CWLCrG 107 (126)
.+.|-|-+|+--|++|+ ||.|..
T Consensus 121 ~cp~IVkfyGa~F~EGd-cWiCME 143 (361)
T KOG1006|consen 121 NCPNIVKFYGALFSEGD-CWICME 143 (361)
T ss_pred CCcHHHHHhhhhhcCCc-eeeeHH
Confidence 34578889999999997 999964
No 77
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=34.52 E-value=26 Score=29.26 Aligned_cols=48 Identities=29% Similarity=0.599 Sum_probs=28.9
Q ss_pred CceeeccCCCCCcEecccccCCccCcccccCceeccCCeEeeccccccccceeee-----ccCCceeeC
Q 033141 63 NSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFSLIQY-----QPHSSCVYV 126 (126)
Q Consensus 63 ~s~~C~dCdGnGai~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il~~~~~-----~~~~~~~~~ 126 (126)
.+.-|-+-.|.+.+.|..|+|+|=-.-++ .+|+..||-| +|.....||
T Consensus 26 ~~~py~e~~g~~~vtCPTCqGtGrIP~eq----------------e~qLVALIPy~DqRLKPrRTklyV 78 (238)
T PF07092_consen 26 SSFPYVEFTGRDSVTCPTCQGTGRIPREQ----------------ENQLVALIPYSDQRLKPRRTKLYV 78 (238)
T ss_pred ccCccccccCCCCCcCCCCcCCccCCccc----------------hhcEEEEEeccccccCCceeEEEe
Confidence 44455556677778888888877443321 3566666665 455555554
No 78
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=34.43 E-value=17 Score=34.86 Aligned_cols=14 Identities=29% Similarity=0.838 Sum_probs=9.8
Q ss_pred ceeeccCCCCCcEe
Q 033141 64 SVVCADCDGNGAVL 77 (126)
Q Consensus 64 s~~C~dCdGnGai~ 77 (126)
.-.|+.|.|.|.+.
T Consensus 738 ~G~C~~C~G~G~~~ 751 (943)
T PRK00349 738 GGRCEACQGDGVIK 751 (943)
T ss_pred CCCCCcccccceEE
Confidence 45688888877654
No 79
>PF07167 PhaC_N: Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; InterPro: IPR010941 This entry represents the central domain of the bacterial poly-beta-hydroxybutyrate polymerase (PhaC). Polyhydroxyalkanoic acids (PHAs) are carbon and energy reserve polymers produced in some bacteria when carbon sources are plentiful and another nutrient, such as nitrogen, phosphate, oxygen, or sulphur, becomes limiting. PHAs composed of monomeric units ranging from 3 to 14 carbons exist in nature. When the carbon source is exhausted, PHA is utilised by the bacterium. PhaC links D-(-)-3-hydroxybutyrl-CoA to an existing PHA molecule by the formation of an ester bond [].; GO: 0016746 transferase activity, transferring acyl groups, 0042619 poly-hydroxybutyrate biosynthetic process
Probab=33.71 E-value=20 Score=28.44 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=13.9
Q ss_pred cccccceeeeccCCceee
Q 033141 108 SSQHFSLIQYQPHSSCVY 125 (126)
Q Consensus 108 kk~il~~~~~~~~~~~~~ 125 (126)
+.++++||||.|-..=||
T Consensus 126 rn~l~eLiqY~P~T~~v~ 143 (172)
T PF07167_consen 126 RNDLMELIQYAPTTEKVH 143 (172)
T ss_pred ECCceEEEeecCCCCCcc
Confidence 478999999999765443
No 80
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=33.64 E-value=18 Score=30.17 Aligned_cols=17 Identities=35% Similarity=0.860 Sum_probs=14.6
Q ss_pred CceeeccCCCCCcEecc
Q 033141 63 NSVVCADCDGNGAVLCS 79 (126)
Q Consensus 63 ~s~~C~dCdGnGai~C~ 79 (126)
+++.||-|.|+|-|+=.
T Consensus 37 ~~vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 37 DSVTCPTCQGTGRIPRE 53 (238)
T ss_pred CCCcCCCCcCCccCCcc
Confidence 68999999999988743
No 81
>PF14843 GF_recep_IV: Growth factor receptor domain IV; PDB: 1N8Z_C 1S78_A 3N85_A 2A91_A 3MZW_A 3BE1_A 3U2P_A 2AHX_B 3LTF_A 3I2T_A ....
Probab=32.07 E-value=40 Score=24.47 Aligned_cols=41 Identities=29% Similarity=0.747 Sum_probs=25.7
Q ss_pred eec--cCCCCCcEecccccCCccC--------cccccCceeccCCeEeecc
Q 033141 66 VCA--DCDGNGAVLCSQCKGSGVN--------AVDFFGGQFKAGDSCWLCG 106 (126)
Q Consensus 66 ~C~--dCdGnGai~C~QCkG~GvN--------~~D~FnG~fKaG~~CWLCr 106 (126)
.|. -|.|.|+--|.+|+.-=.| ..+.|.+.+..+..|+.|-
T Consensus 5 ~C~~~gC~Gp~~~~C~sC~~~~~~g~Cv~~C~~~~~~~~~~~~~~~C~~Ch 55 (132)
T PF14843_consen 5 QCASDGCWGPGPDQCLSCRNFSFNGTCVASCPDGYYFDGSYEDSNTCQPCH 55 (132)
T ss_dssp TBGTT-BSSSSTTCBSSBSSEEETTEEESSTSSSSSSSSEEEETTEEEE--
T ss_pred ccCCCCccCcChhhccCccCcccCCcchhhcccccccccccccCCcCcccC
Confidence 467 8999999999999851111 1113456676788888763
No 82
>smart00261 FU Furin-like repeats.
Probab=28.86 E-value=30 Score=20.12 Aligned_cols=20 Identities=40% Similarity=0.894 Sum_probs=15.8
Q ss_pred ceeeccCCCCCcEecccccC
Q 033141 64 SVVCADCDGNGAVLCSQCKG 83 (126)
Q Consensus 64 s~~C~dCdGnGai~C~QCkG 83 (126)
+..|..|.|.+...|.+|+.
T Consensus 8 ~~~C~~C~~~~~~~C~~C~~ 27 (46)
T smart00261 8 HPECATCTGPGPDDCTSCKH 27 (46)
T ss_pred cccccccCCcCcCcCccCCc
Confidence 35688888888888888864
No 83
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=28.36 E-value=27 Score=21.74 Aligned_cols=12 Identities=50% Similarity=1.204 Sum_probs=6.6
Q ss_pred CCCCcEeccccc
Q 033141 71 DGNGAVLCSQCK 82 (126)
Q Consensus 71 dGnGai~C~QCk 82 (126)
+|+|.-.|.||.
T Consensus 22 ~~~G~~~C~~C~ 33 (40)
T PF08273_consen 22 DGRGTWICRQCG 33 (40)
T ss_dssp ---S-EEETTTT
T ss_pred ccCCCEECCCCC
Confidence 456888899993
No 84
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=26.91 E-value=36 Score=32.76 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=24.9
Q ss_pred cEecccccCCccCccc-ccCceeccCCeEeecccccc
Q 033141 75 AVLCSQCKGSGVNAVD-FFGGQFKAGDSCWLCGQSSQ 110 (126)
Q Consensus 75 ai~C~QCkG~GvN~~D-~FnG~fKaG~~CWLCrGkk~ 110 (126)
.-.|..|+|.|+=.+| .|..... ..|-.|.|+|=
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~--~~C~~C~G~R~ 772 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVY--VPCDVCKGKRY 772 (943)
T ss_pred CCCCCcccccceEEEEeccCCCcc--ccCccccCccc
Confidence 3469999999998877 3433222 68999999873
No 85
>PF05310 Tenui_NS3: Tenuivirus movement protein; InterPro: IPR007974 This family of ssRNA negative-strand crop plant tenuivirus proteins appears to combine PV2 [], NS2 [], NS3, and PV3 proteins. Plant viruses encode specific proteins known as movement proteins (MPs) to control their spread through plasmodesmata (PD) in walls between cells as well as from leaf to leaf via vascular-dependent transport. During this movement process, the virally encoded MPs interact with viral genomes for transport from the viral replication sites to the PDs in the walls of infected cells along the cytoskeleton and/or endoplasmic reticulum (ER) network. The virus is then thought to move through the PDs in the form of MP-associated ribonucleoprotein complexes or as virions []. The NS3 protein appears to function as an RNA silencing suppressor [].; PDB: 3AJF_A.
Probab=26.27 E-value=22 Score=29.07 Aligned_cols=18 Identities=33% Similarity=1.021 Sum_probs=0.0
Q ss_pred cCCeEeecc----cccccccee
Q 033141 98 AGDSCWLCG----QSSQHFSLI 115 (126)
Q Consensus 98 aG~~CWLCr----Gkk~il~~~ 115 (126)
+---||+|+ -.++-|++|
T Consensus 97 ~~tKCWlCdk~~~~~t~~L~~~ 118 (186)
T PF05310_consen 97 PKTKCWLCDKPSYQETDNLKFI 118 (186)
T ss_dssp ----------------------
T ss_pred CccceEEecchhhhccCCcceE
Confidence 445699999 555656554
No 86
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=26.24 E-value=34 Score=20.34 Aligned_cols=20 Identities=35% Similarity=0.894 Sum_probs=17.0
Q ss_pred eeccCCCCCcEecccccCCc
Q 033141 66 VCADCDGNGAVLCSQCKGSG 85 (126)
Q Consensus 66 ~C~dCdGnGai~C~QCkG~G 85 (126)
-|..|.|.+.-.|.+|+..=
T Consensus 5 ~C~~C~g~~~~~C~~C~~~~ 24 (49)
T cd00064 5 SCATCTGPGPDQCTSCRHGF 24 (49)
T ss_pred ccCCCcCcCcCcCccCcCcc
Confidence 58899999999999998654
No 87
>COG4643 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.35 E-value=55 Score=29.23 Aligned_cols=37 Identities=27% Similarity=0.656 Sum_probs=29.4
Q ss_pred CcccCceeeccC-----------CCCCcEeccccc-CCccCcccccCce
Q 033141 59 NTKRNSVVCADC-----------DGNGAVLCSQCK-GSGVNAVDFFGGQ 95 (126)
Q Consensus 59 ~~kp~s~~C~dC-----------dGnGai~C~QCk-G~GvN~~D~FnG~ 95 (126)
..+++++-|+.| +|-|...|-+|. |.|.-++..-+++
T Consensus 27 ~~~~~~~~cpvcg~k~RFr~dD~kGrGtw~c~y~~~GDGl~lvs~v~~~ 75 (366)
T COG4643 27 GLKPGGHPCPVCGGKDRFRFDDRKGRGTWFCNYCGHGDGLPLVSLVRQR 75 (366)
T ss_pred cccCCCCCCCccCCccccccCCccCCccEEEEeeccCCCccceeeccCC
Confidence 557777788888 468899999999 9999888765544
No 88
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.89 E-value=48 Score=28.55 Aligned_cols=19 Identities=37% Similarity=1.001 Sum_probs=17.1
Q ss_pred ceeeccCCCCCcEeccccc
Q 033141 64 SVVCADCDGNGAVLCSQCK 82 (126)
Q Consensus 64 s~~C~dCdGnGai~C~QCk 82 (126)
-..|..|.-||-+.|.-|-
T Consensus 262 ~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 262 VLRCLECNENGLVRCPVCS 280 (281)
T ss_pred EEECcccCCCCceeCCccC
Confidence 4789999999999999985
No 89
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=23.06 E-value=36 Score=35.33 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=14.3
Q ss_pred cccccCCccCccc-ccCceeccCCeEeeccccc
Q 033141 78 CSQCKGSGVNAVD-FFGGQFKAGDSCWLCGQSS 109 (126)
Q Consensus 78 C~QCkG~GvN~~D-~FnG~fKaG~~CWLCrGkk 109 (126)
|..|+|.|+-.+| +|---+ =..|-.|.|||
T Consensus 1610 C~~C~G~G~i~i~m~fl~dv--~~~C~~C~G~R 1640 (1809)
T PRK00635 1610 CSDCWGLGYQWIDRAFYALE--KRPCPTCSGFR 1640 (1809)
T ss_pred CCCCccCceEEEecccCCCc--ccCCCCCCCcC
Confidence 5555555554444 232111 12566776665
No 90
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=22.68 E-value=41 Score=34.93 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=23.3
Q ss_pred CceeeccCCCCCc------------EecccccCCccCccc
Q 033141 63 NSVVCADCDGNGA------------VLCSQCKGSGVNAVD 90 (126)
Q Consensus 63 ~s~~C~dCdGnGa------------i~C~QCkG~GvN~~D 90 (126)
..-.|+.|.|.|. +.|..|.|...|.+-
T Consensus 1606 ~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~ 1645 (1809)
T PRK00635 1606 KQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLA 1645 (1809)
T ss_pred CCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHH
Confidence 3567999999994 589999999888764
No 91
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=22.09 E-value=58 Score=19.40 Aligned_cols=9 Identities=33% Similarity=1.280 Sum_probs=5.8
Q ss_pred CCcEecccc
Q 033141 73 NGAVLCSQC 81 (126)
Q Consensus 73 nGai~C~QC 81 (126)
+|...|+.|
T Consensus 17 ~g~~vC~~C 25 (43)
T PF08271_consen 17 RGELVCPNC 25 (43)
T ss_dssp TTEEEETTT
T ss_pred CCeEECCCC
Confidence 466666666
No 92
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=21.98 E-value=57 Score=20.03 Aligned_cols=12 Identities=50% Similarity=1.132 Sum_probs=8.9
Q ss_pred CCCCcEeccccc
Q 033141 71 DGNGAVLCSQCK 82 (126)
Q Consensus 71 dGnGai~C~QCk 82 (126)
+|+|...|.||.
T Consensus 21 ~g~G~~~C~~Cg 32 (37)
T smart00778 21 DGRGTWFCSVCG 32 (37)
T ss_pred CCCcCEEeCCCC
Confidence 456888888884
No 93
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=21.75 E-value=81 Score=17.94 Aligned_cols=6 Identities=50% Similarity=1.409 Sum_probs=2.6
Q ss_pred eeeccC
Q 033141 65 VVCADC 70 (126)
Q Consensus 65 ~~C~dC 70 (126)
+.|+.|
T Consensus 26 v~C~~C 31 (38)
T TIGR02098 26 VRCGKC 31 (38)
T ss_pred EECCCC
Confidence 444444
No 94
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.80 E-value=84 Score=18.55 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=4.1
Q ss_pred CcEeccccc
Q 033141 74 GAVLCSQCK 82 (126)
Q Consensus 74 Gai~C~QCk 82 (126)
+.+-|+.|+
T Consensus 24 ~~vrC~~C~ 32 (37)
T PF13719_consen 24 RKVRCPKCG 32 (37)
T ss_pred cEEECCCCC
Confidence 344455443
Done!