Query 033141
Match_columns 126
No_of_seqs 31 out of 33
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 16:56:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 97.2 0.0001 3.6E-09 49.7 1.9 49 62-112 26-80 (104)
2 1exk_A DNAJ protein; extended 97.2 0.00011 3.9E-09 46.7 1.3 49 62-112 9-63 (79)
3 3lcz_A YCZA, inhibitor of trap 94.9 0.013 4.4E-07 37.1 2.2 27 64-90 9-38 (53)
4 1nlt_A Protein YDJ1, mitochond 94.7 0.0094 3.2E-07 45.9 1.3 50 63-112 37-93 (248)
5 1exk_A DNAJ protein; extended 94.4 0.02 6.9E-07 36.1 2.1 38 64-111 28-76 (79)
6 2bx9_A Anti-trap, AT, tryptoph 92.3 0.075 2.5E-06 33.5 2.2 26 63-88 8-36 (53)
7 2ctt_A DNAJ homolog subfamily 90.7 0.12 3.9E-06 34.6 2.0 39 64-112 45-94 (104)
8 1nlt_A Protein YDJ1, mitochond 85.0 0.29 9.9E-06 37.5 1.2 24 66-89 82-110 (248)
9 1pft_A TFIIB, PFTFIIBN; N-term 52.9 6.9 0.00024 23.0 1.7 19 64-82 5-31 (50)
10 1dl6_A Transcription factor II 44.4 15 0.0005 22.9 2.3 21 61-81 8-36 (58)
11 1ssz_A Pulmonary surfactant-as 43.6 2.6 8.9E-05 25.4 -1.2 6 102-107 1-6 (34)
12 2dwf_A Pulmonary surfactant-as 43.1 3.7 0.00013 24.8 -0.6 6 102-107 1-6 (34)
13 1nui_A DNA primase/helicase; z 33.5 18 0.00063 26.6 1.7 33 59-92 9-49 (255)
14 2jny_A Uncharacterized BCR; st 27.0 27 0.00092 22.7 1.5 18 64-81 10-34 (67)
15 2hf1_A Tetraacyldisaccharide-1 24.5 28 0.00097 22.5 1.2 17 65-81 9-32 (68)
16 2jr6_A UPF0434 protein NMA0874 24.1 30 0.001 22.4 1.3 18 64-81 8-32 (68)
17 2pk7_A Uncharacterized protein 23.0 34 0.0012 22.2 1.4 18 64-81 8-32 (69)
18 2js4_A UPF0434 protein BB2007; 22.4 37 0.0013 22.1 1.5 18 64-81 8-32 (70)
19 4bbr_M Transcription initiatio 21.9 28 0.00097 27.7 1.0 17 65-81 22-48 (345)
20 2odd_A Protein CBFA2T1; MYND z 21.9 40 0.0014 20.4 1.5 24 61-84 14-37 (64)
21 3k1f_M Transcription initiatio 20.3 46 0.0016 26.4 1.9 19 64-82 21-49 (197)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.24 E-value=0.0001 Score=49.72 Aligned_cols=49 Identities=29% Similarity=0.721 Sum_probs=37.1
Q ss_pred cCceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141 62 RNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 62 p~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il 112 (126)
+....|+.|+|.|+ ..|..|.|+|.-.... |.|.--..|..|.|.-++.
T Consensus 26 ~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~~~~~~~C~~C~G~G~~i 80 (104)
T 2ctt_A 26 NIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GPFVMRSTCRRCGGRGSII 80 (104)
T ss_dssp SCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TTEEEEEECSSSSSSSEEC
T ss_pred eeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CCEEEEEECCcCCCcceEC
Confidence 45689999999985 6899999999754443 5555556788888877665
No 2
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.17 E-value=0.00011 Score=46.70 Aligned_cols=49 Identities=29% Similarity=0.594 Sum_probs=35.4
Q ss_pred cCceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141 62 RNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 62 p~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il 112 (126)
+....|+.|+|.|+ ..|..|.|+|.-.... |.|..-..|..|.|.-.+.
T Consensus 9 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~ 63 (79)
T 1exk_A 9 PTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ--GFFAVQQTCPHCQGRGTLI 63 (79)
T ss_dssp CCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE--TTEEEEEECTTTTTSSEEC
T ss_pred ccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc--CCCEEeeECcCCCCccEEC
Confidence 45578999999996 5799999999644322 5555445788888877664
No 3
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=94.93 E-value=0.013 Score=37.05 Aligned_cols=27 Identities=33% Similarity=0.893 Sum_probs=22.6
Q ss_pred ceeeccCCCCCc---EecccccCCccCccc
Q 033141 64 SVVCADCDGNGA---VLCSQCKGSGVNAVD 90 (126)
Q Consensus 64 s~~C~dCdGnGa---i~C~QCkG~GvN~~D 90 (126)
...|++|.|.|. ..|..|.|.|+-...
T Consensus 9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp EEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred eccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence 468999999998 579999999975443
No 4
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=94.68 E-value=0.0094 Score=45.86 Aligned_cols=50 Identities=24% Similarity=0.662 Sum_probs=30.6
Q ss_pred CceeeccCCCCCc-----EecccccCCccCcccccCc--eeccCCeEeecccccccc
Q 033141 63 NSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGG--QFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 63 ~s~~C~dCdGnGa-----i~C~QCkG~GvN~~D~FnG--~fKaG~~CWLCrGkk~il 112 (126)
....|+.|+|.|+ ..|..|.|+|+-..-...| .+.--..|..|.|+-++.
T Consensus 37 r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i 93 (248)
T 1nlt_A 37 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII 93 (248)
T ss_dssp EEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC
T ss_pred EEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe
Confidence 3578999999995 5799999999643222112 122334566666655443
No 5
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=94.38 E-value=0.02 Score=36.12 Aligned_cols=38 Identities=32% Similarity=0.811 Sum_probs=29.3
Q ss_pred ceeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH 111 (126)
Q Consensus 64 s~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i 111 (126)
...|+.|.|.|.+ .|..|.|+|.-. -+.|..|.|...+
T Consensus 28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~G~~ 76 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI----------KDPCNKCHGHGRV 76 (79)
T ss_dssp CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC----------SSBCGGGTTSSEE
T ss_pred CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC----------CCcCCCCCCeEEE
Confidence 3689999999965 799999998533 2578888887765
No 6
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=92.28 E-value=0.075 Score=33.50 Aligned_cols=26 Identities=35% Similarity=0.888 Sum_probs=20.5
Q ss_pred CceeeccCCCCCcE---ecccccCCccCc
Q 033141 63 NSVVCADCDGNGAV---LCSQCKGSGVNA 88 (126)
Q Consensus 63 ~s~~C~dCdGnGai---~C~QCkG~GvN~ 88 (126)
....|+.|.|.|++ .|..|.|+|.=.
T Consensus 8 ~~~~C~~C~GsG~~~~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 8 LEVACPKCERAGEIEGTPCPACSGKGVIL 36 (53)
T ss_dssp HEEECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred ccccCCCCcceeccCCCCCccCCCCccEE
Confidence 35689999999965 699999988643
No 7
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.70 E-value=0.12 Score=34.64 Aligned_cols=39 Identities=28% Similarity=0.629 Sum_probs=29.9
Q ss_pred ceeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF 112 (126)
Q Consensus 64 s~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il 112 (126)
...|+.|.|.|.+ .|..|.|.|.-. -+.|--|.|+..+.
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i----------~~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII----------ISPCVVCRGAGQAK 94 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC----------SSCCSSSSSCSEEC
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC----------CCcCCCCCCeeEEE
Confidence 3689999999954 799999998532 26799998876554
No 8
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=84.97 E-value=0.29 Score=37.53 Aligned_cols=24 Identities=33% Similarity=0.810 Sum_probs=12.3
Q ss_pred eeccCCCCC-----cEecccccCCccCcc
Q 033141 66 VCADCDGNG-----AVLCSQCKGSGVNAV 89 (126)
Q Consensus 66 ~C~dCdGnG-----ai~C~QCkG~GvN~~ 89 (126)
.|+.|.|.| ...|..|+|.|+-.+
T Consensus 82 ~C~~C~G~G~~i~~~~~C~~C~G~g~~~~ 110 (248)
T 1nlt_A 82 ECDVCHGTGDIIDPKDRCKSCNGKKVENE 110 (248)
T ss_dssp SCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred cCCCCCCcCEEeccCCCCcccCCCceEee
Confidence 344444444 334666666665443
No 9
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=52.87 E-value=6.9 Score=22.97 Aligned_cols=19 Identities=32% Similarity=1.127 Sum_probs=13.6
Q ss_pred ceeeccCCC--------CCcEeccccc
Q 033141 64 SVVCADCDG--------NGAVLCSQCK 82 (126)
Q Consensus 64 s~~C~dCdG--------nGai~C~QCk 82 (126)
...|++|.+ .|...|..|.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG 31 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCG 31 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccC
Confidence 457888866 3777888873
No 10
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=44.37 E-value=15 Score=22.90 Aligned_cols=21 Identities=24% Similarity=0.751 Sum_probs=14.7
Q ss_pred ccCceeeccCCC--------CCcEecccc
Q 033141 61 KRNSVVCADCDG--------NGAVLCSQC 81 (126)
Q Consensus 61 kp~s~~C~dCdG--------nGai~C~QC 81 (126)
...-..|++|.+ .|-..|..|
T Consensus 8 ll~~~~Cp~C~~~~lv~D~~~ge~vC~~C 36 (58)
T 1dl6_A 8 ALPRVTCPNHPDAILVEDYRAGDMICPEC 36 (58)
T ss_dssp CCSCCSBTTBSSSCCEECSSSCCEECTTT
T ss_pred ccccccCcCCCCCceeEeCCCCeEEeCCC
Confidence 334457999965 477888888
No 11
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=43.62 E-value=2.6 Score=25.40 Aligned_cols=6 Identities=67% Similarity=2.217 Sum_probs=5.2
Q ss_pred Eeeccc
Q 033141 102 CWLCGQ 107 (126)
Q Consensus 102 CWLCrG 107 (126)
|||||.
T Consensus 1 cwlcr~ 6 (34)
T 1ssz_A 1 CWLCRA 6 (34)
T ss_dssp CHHHHH
T ss_pred ChhHHH
Confidence 899985
No 12
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=43.11 E-value=3.7 Score=24.84 Aligned_cols=6 Identities=67% Similarity=2.217 Sum_probs=5.0
Q ss_pred Eeeccc
Q 033141 102 CWLCGQ 107 (126)
Q Consensus 102 CWLCrG 107 (126)
|||||-
T Consensus 1 CwlCrt 6 (34)
T 2dwf_A 1 CWLCRA 6 (34)
T ss_dssp CCCHHH
T ss_pred ChhHHH
Confidence 899974
No 13
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=33.50 E-value=18 Score=26.61 Aligned_cols=33 Identities=15% Similarity=0.419 Sum_probs=17.8
Q ss_pred CcccCceeeccCCC--------CCcEecccccCCccCccccc
Q 033141 59 NTKRNSVVCADCDG--------NGAVLCSQCKGSGVNAVDFF 92 (126)
Q Consensus 59 ~~kp~s~~C~dCdG--------nGai~C~QCkG~GvN~~D~F 92 (126)
+.-..-..||.|-| .|+..|.+|. .|++..|.|
T Consensus 9 ~~~~~~~~CP~Cg~~d~~~~~~dg~~~C~~Cg-~~~~~~~~~ 49 (255)
T 1nui_A 9 SVFLYHIPCDNCGSSDGNSLFSDGHTFCYVCE-KWTAGNEDT 49 (255)
T ss_dssp -CEEEEECCSSSCCSSCEEEETTSCEEETTTC-CEEC----C
T ss_pred cceecCCcCCCCCCCCCceEeCCCCeecccCC-CcCCCcccc
Confidence 33334567888855 3567899995 455544433
No 14
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.98 E-value=27 Score=22.70 Aligned_cols=18 Identities=11% Similarity=0.331 Sum_probs=11.5
Q ss_pred ceeeccCCC-------CCcEecccc
Q 033141 64 SVVCADCDG-------NGAVLCSQC 81 (126)
Q Consensus 64 s~~C~dCdG-------nGai~C~QC 81 (126)
-.+||.|.| .|...|..|
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c 34 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERL 34 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTT
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCC
Confidence 456777766 456666666
No 15
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=24.49 E-value=28 Score=22.52 Aligned_cols=17 Identities=29% Similarity=0.839 Sum_probs=10.6
Q ss_pred eeeccCCCC-------CcEecccc
Q 033141 65 VVCADCDGN-------GAVLCSQC 81 (126)
Q Consensus 65 ~~C~dCdGn-------Gai~C~QC 81 (126)
++||.|.|. |...|..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~c 32 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGD 32 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTT
T ss_pred eECCCCCCcCeEeCCCCEEEcCCC
Confidence 567777653 56666665
No 16
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.14 E-value=30 Score=22.43 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=11.2
Q ss_pred ceeeccCCCC-------CcEecccc
Q 033141 64 SVVCADCDGN-------GAVLCSQC 81 (126)
Q Consensus 64 s~~C~dCdGn-------Gai~C~QC 81 (126)
-++||.|.|. |...|..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~c 32 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQA 32 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTT
T ss_pred heECCCCCCcCeEeCCCCEEEcCCC
Confidence 3567777653 56666665
No 17
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.01 E-value=34 Score=22.18 Aligned_cols=18 Identities=17% Similarity=0.538 Sum_probs=10.7
Q ss_pred ceeeccCCCC-------CcEecccc
Q 033141 64 SVVCADCDGN-------GAVLCSQC 81 (126)
Q Consensus 64 s~~C~dCdGn-------Gai~C~QC 81 (126)
-.+||.|.|. |...|..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~c 32 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGA 32 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTT
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCC
Confidence 3567777653 55566655
No 18
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=22.43 E-value=37 Score=22.10 Aligned_cols=18 Identities=28% Similarity=0.827 Sum_probs=11.5
Q ss_pred ceeeccCCC-------CCcEecccc
Q 033141 64 SVVCADCDG-------NGAVLCSQC 81 (126)
Q Consensus 64 s~~C~dCdG-------nGai~C~QC 81 (126)
-++||.|.| .|...|..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~c 32 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNAD 32 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTT
T ss_pred heECCCCCCcCEEeCCCCEEEcCCC
Confidence 357777766 356666666
No 19
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=21.91 E-value=28 Score=27.74 Aligned_cols=17 Identities=35% Similarity=1.173 Sum_probs=14.8
Q ss_pred eeeccCCC----------CCcEecccc
Q 033141 65 VVCADCDG----------NGAVLCSQC 81 (126)
Q Consensus 65 ~~C~dCdG----------nGai~C~QC 81 (126)
..|++|.+ .|-..|+.|
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G~~vC~~C 48 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEGDVVCALC 48 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGTEEEETTT
T ss_pred CcCCCCCCCCCceeEECCCCcEEeCCC
Confidence 47999996 489999999
No 20
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=21.89 E-value=40 Score=20.37 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=18.1
Q ss_pred ccCceeeccCCCCCcEecccccCC
Q 033141 61 KRNSVVCADCDGNGAVLCSQCKGS 84 (126)
Q Consensus 61 kp~s~~C~dCdGnGai~C~QCkG~ 84 (126)
+|....|..|.-.+...|+.|+..
T Consensus 14 ~~~~~~C~~C~~~~~~~Cs~C~~~ 37 (64)
T 2odd_A 14 GDSSESCWNCGRKASETCSGCNTA 37 (64)
T ss_dssp -CCSSSCTTTSSCCCEEETTTSCC
T ss_pred CCCCCcCccccCCCcccCCCCCCh
Confidence 345568999988888999998853
No 21
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=20.33 E-value=46 Score=26.40 Aligned_cols=19 Identities=32% Similarity=1.013 Sum_probs=15.6
Q ss_pred ceeeccCCC----------CCcEeccccc
Q 033141 64 SVVCADCDG----------NGAVLCSQCK 82 (126)
Q Consensus 64 s~~C~dCdG----------nGai~C~QCk 82 (126)
...|++|.+ .|-..|+.|.
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCG 49 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCG 49 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTC
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCC
Confidence 357999998 6888999984
Done!