BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033143
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 88.2 bits (217), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 4 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 63
+VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 158
Query: 64 VKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
+KG DEG+ MK GG RRL IP L + G A G + PN+ ++F+V L
Sbjct: 159 IKGWDEGVQGMKVGGVRRLTIPPQLGY--GARGAAG--VIPPNATLVFEVEL 206
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 4 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 63
+VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G G V
Sbjct: 3 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHV 62
Query: 64 VKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
+KG DEG+ MK GG RRL IP L + G A G + PN+ ++F+V L
Sbjct: 63 IKGWDEGVQGMKVGGVRRLTIPPQLGY--GARGAGG--VIPPNATLVFEVEL 110
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 4 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 63
+VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G G V
Sbjct: 99 IVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 158
Query: 64 VKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
+KG DEG+ MK GG RRL IP L + G A G + PN+ ++F+V L
Sbjct: 159 IKGWDEGVQGMKVGGVRRLTIPPQLGY--GARGAGG--VIPPNATLVFEVEL 206
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 4 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 63
+VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 158
Query: 64 VKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
+KG DEG+ MK GG RRL IP L + G A G + PN+ ++F+V L
Sbjct: 159 IKGWDEGVQGMKVGGVRRLTIPPQLGY--GARGAGG--VIPPNATLVFEVEL 206
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 2 VPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG 61
+ +VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G G
Sbjct: 5 MTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGG 64
Query: 62 QVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
V+KG DEG+ MK GG RRL IP L + G A G + PN+ ++F+V L
Sbjct: 65 MVIKGWDEGVQGMKVGGVRRLTIPPQLGY--GARGAGG--VIPPNATLVFEVEL 114
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 2 VPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG 61
+ +VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G G
Sbjct: 21 MTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGG 80
Query: 62 QVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
V+KG DEG+ MK GG RRL IP L + G A G + PN+ ++F+V L
Sbjct: 81 MVIKGWDEGVQGMKVGGVRRLTIPPQLGY--GARGAGG--VIPPNATLVFEVEL 130
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 4 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 63
+VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMV 158
Query: 64 VKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
+KG DEG+ MK GG RRL IP L + G A G + PN+ ++F+V L
Sbjct: 159 IKGWDEGVQGMKVGGVRRLTIPPQLGY--GARGAGG--VIPPNATLVFEVEL 206
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Query: 4 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 63
+VTTESGL+Y+D+ G G G V+ +Y + GQ F SS ++ P+ F +G G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMV 158
Query: 64 VKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
+KG DEG+ MK GG RRL IP L + G A G + PN+ ++F+V L
Sbjct: 159 IKGWDEGVQGMKVGGVRRLTIPPQLGY--GARGAGG--VIPPNATLVFEVEL 206
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 4 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 63
+VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G G V
Sbjct: 3 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 62
Query: 64 VKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
+KG DEG+ MK GG RRL IP L + G + PN+ ++F+V L
Sbjct: 63 IKGWDEGVQGMKVGGVRRLTIPPQLGYGAGGAGGV----IPPNATLVFEVEL 110
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Query: 9 SGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
SGL + D VG GP G + A+YV + +G++FDSS +G+P FR+G G+V+KG D
Sbjct: 12 SGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 71
Query: 69 EGILT------MKTGGKRRLYIPGPLAF-PKGLVSAPGRPRVAPNSPVIFDVSLEYI 118
+GIL M TGGKR L IP LA+ +G G + P S ++FD+ EYI
Sbjct: 72 QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDI--EYI 126
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
Query: 8 ESGLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKG 66
E ++ I G G + P G V +Y + +GQ FDSS+++G P+ +G GQV+KG
Sbjct: 5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64
Query: 67 LDEGILTMKTGGKRRLYIPGPLAF-PKGLVSAPGRPRVAPNSPVIFDVSL 115
D GI + G K RL IPGP A+ P+G PG + PNS ++FDV L
Sbjct: 65 WDVGIPKLSVGEKARLTIPGPYAYGPRGF---PG--LIPPNSTLVFDVEL 109
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRL 82
+P VG +V +Y + G+ FDSS ++ + F++G GQV+KG D+GI TMK G
Sbjct: 42 TPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALF 101
Query: 83 YIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
IP LA+ G +P P + N+ + FDV L
Sbjct: 102 TIPPELAY--GESGSP--PTIPANATLQFDVEL 130
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRL 82
+P VG +V +Y + G+ FDSS ++ + F++G GQV+KG D+GI TMK G
Sbjct: 26 TPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALF 85
Query: 83 YIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
IP LA+ G +P P + N+ + FDV L
Sbjct: 86 TIPPELAY--GESGSP--PTIPANATLQFDVEL 114
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 30 VAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLA 89
+ +Y + G FDSSL + +P++F +G+GQV+KG D+G+L M G KR+L IP L
Sbjct: 12 LHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELG 71
Query: 90 FPKGLVSAPGRPRVAPNSPVIFDVSL 115
+ G AP P++ + ++F+V L
Sbjct: 72 Y--GERGAP--PKIPGGATLVFEVEL 93
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 5/106 (4%)
Query: 11 LQYKDIKVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDE 69
L+ K + G G + P G +V +Y P G+ FDSS +G+P+ F +G+G+V+KG D+
Sbjct: 26 LEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQ 85
Query: 70 GILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
G+ TM G K IP LA+ G P P + P + ++F+V L
Sbjct: 86 GVATMTLGEKALFTIPYQLAY--GERGYP--PVIPPKATLVFEVEL 127
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 7/108 (6%)
Query: 10 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G++ + I G G + P G +Y M+ +G+ FDSS ++ +P+ FR+G +V+KG +
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFE 60
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVA-PNSPVIFDVSL 115
EG M G + +L +A+ A G P V PN+ +IFDV L
Sbjct: 61 EGAAQMSLGQRAKLTCTPDVAY-----GATGHPGVIPPNATLIFDVEL 103
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 7/108 (6%)
Query: 9 SGLQYKDIKVGQGP-SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGL 67
SGL ++ I G G +P + + +Y + G +FDSS E+G+P FR +V+KG
Sbjct: 37 SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGW 94
Query: 68 DEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
E + M+ G + RL+IP LA+ G+ G + P SP+ FDV L
Sbjct: 95 TEALQLMREGDRWRLFIPYDLAY--GVTGGGG--MIPPYSPLEFDVEL 138
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 10 GLQYKDIKVGQGPSPPVGFQVAA-NYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G+Q + G + P QVA +Y + G++FDSS +G+P+ F VG G+V++G D
Sbjct: 2 GVQVVTLAAGDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWD 61
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVA-PNSPVIFDVSL 115
EG+ M G + +L A+ + G P V PN+ + FDV L
Sbjct: 62 EGVAQMSVGQRAKLVCSPDYAY-----GSRGHPGVIPPNATLTFDVEL 104
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 17 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 75
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 43 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMK 102
Query: 76 TGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
G L A+ SA P++ N+ + F++ L
Sbjct: 103 KGEICHLLCKPEYAYG----SAGSLPKIPSNATLFFEIEL 138
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 17 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 75
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 43 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMK 102
Query: 76 TGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
G L A+ SA P++ N+ + F++ L
Sbjct: 103 KGEICHLLCKPEYAYG----SAGSLPKIPSNATLFFEIEL 138
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 17 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 75
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 43 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMK 102
Query: 76 TGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
G L A+ SA P++ N+ + F++ L
Sbjct: 103 KGEICHLLCKPEYAYG----SAGSLPKIPSNATLFFEIEL 138
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 17 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 75
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 27 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMK 86
Query: 76 TGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
G L A+ SA P++ N+ + F++ L
Sbjct: 87 KGEICHLLCKPEYAYG----SAGSLPKIPSNATLFFEIEL 122
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 17 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 75
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 27 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMK 86
Query: 76 TGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
G L A+ SA P++ N+ + F++ L
Sbjct: 87 KGEICHLLCKPEYAYG----SAGSLPKIPSNATLFFEIEL 122
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 10 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWE 60
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
EG+ M G + +L I A+ G PG + PN+ +IFDV L
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAY--GATGHPG--IIPPNATLIFDVEL 103
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 10 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++GL+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLE 60
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
EG+ M G + +L I A+ G PG + P++ ++FDV L
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAY--GATGHPG--IIPPHATLVFDVEL 103
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 14/101 (13%)
Query: 24 PPVGFQVAANYVAMIPSGQIFDSSLE-------KGRPYIFRVGSGQVVKGLDEGILTMKT 76
P G V Y +P G +FD++++ +P F+VG G+V++G DE +LTM
Sbjct: 20 PKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 79
Query: 77 GGKRRLYIPGPLAFPKGLVSAPGRP--RVAPNSPVIFDVSL 115
G K RL I A+ K G+P ++ PN+ +IF+V L
Sbjct: 80 GEKARLEIEPEWAYGK-----KGQPDAKIPPNTKLIFEVEL 115
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 10 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVA-PNSPVIFDVSL 115
EG+ M G + +L I A+ A G P + P++ ++FDV L
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAY-----GATGHPGIIPPHATLVFDVEL 103
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 9 SGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
SGLQYK I G G P V Y + G +FDS+ + G+P F+V QV+ G
Sbjct: 30 SGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWT 87
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
E + M G +Y+P LA+ V P + PN +IF + L
Sbjct: 88 EALQLMPAGSTWEIYVPSGLAYGPRSVGGP----IGPNETLIFKIHL 130
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 10 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G+Q + I G G + P G +Y M+ G+ FDSS +K +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWE 60
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
EG+ M G + +L I A+ G PG + P++ ++FDV L
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAY--GATGVPG--IIPPHATLVFDVEL 103
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 9 SGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
SGLQYK I G G P V Y + G +FDS+ + G+P F+V QV+ G
Sbjct: 106 SGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWT 163
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
E + M G +Y+P LA+ V P + PN +IF + L
Sbjct: 164 EALQLMPAGSTWEIYVPSGLAYGPRSVGGP----IGPNETLIFKIHL 206
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 17 KVGQGP-SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 75
+VG G +P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 39 RVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMK 98
Query: 76 TGGKRRLYIPGPLAFPKGLVSAPGR-PRVAPNSPVIFDVSL 115
G L L P+ A G P++ N+ + F+V L
Sbjct: 99 KGEICHL-----LCKPEYAYGATGSLPKIPSNATLFFEVEL 134
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 10 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G +
Sbjct: 3 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 62
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
EG+ M G + +L I A+ G PG + P++ ++FDV L
Sbjct: 63 EGVAQMSVGQRAKLTISPDYAY--GATGHPG--IIPPHATLVFDVEL 105
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 10 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFE 60
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
EG+ M G + +L I A+ G PG + P++ ++FDV L
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAY--GATGHPG--IIPPHATLVFDVEL 103
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 10 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
EG+ M G + +L I A+ G PG + P++ ++FDV L
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAY--GATGHPG--IIPPHATLVFDVEL 103
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 59.3 bits (142), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 17 KVGQGP-SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 75
+VG G +P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 39 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMK 98
Query: 76 TGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
G L A+ SA P++ N+ + F++ L
Sbjct: 99 RGEICHLLCKPEYAYG----SAGSLPKIPSNATLFFEIEL 134
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 10 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQ 60
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
EG+ M G + +L I A+ G PG + P++ ++FDV L
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAY--GATGHPG--IIPPHATLVFDVEL 103
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Query: 6 TTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVK 65
T+ +GL Y+ ++ G+G +P V NY + G+ FD+S +G P FR+ V+
Sbjct: 118 TSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIP 175
Query: 66 GLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
G EG+ +K GGK +L IP LA+ K G P + PNS ++FDV L
Sbjct: 176 GWTEGLKNIKKGGKIKLVIPPELAYGKA-----GVPGIPPNSTLVFDVEL 220
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Query: 6 TTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVK 65
T+ +GL Y+ ++ G+G +P V NY + G+ FD+S +G P FR+ V+
Sbjct: 118 TSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIP 175
Query: 66 GLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
G EG+ +K GGK +L IP LA+ K G P + PNS ++FDV L
Sbjct: 176 GWTEGLKNIKKGGKIKLVIPPELAYGKA-----GVPGIPPNSTLVFDVEL 220
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 10 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWA 60
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
EG+ M G + +L I A+ G PG + P++ ++FDV L
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAY--GATGHPG--IIPPHATLVFDVEL 103
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 11 LQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDE 69
+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G +E
Sbjct: 2 VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEE 61
Query: 70 GILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
G+ M G + +L I A+ G PG + P++ ++FDV L
Sbjct: 62 GVAQMSVGQRAKLTISPDYAY--GATGHPG--IIPPHATLVFDVEL 103
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 10 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G+Q + I G G + P G +Y M+ G+ DSS ++ +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
EG+ M G + +L I A+ G PG + P++ ++FDV L
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAY--GATGHPG--IIPPHATLVFDVEL 103
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 24 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLY 83
P +G +V +Y + G FDSSL++ + F +G G+V+K D I TMK G +
Sbjct: 67 PMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVG--EVCH 124
Query: 84 IPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIPGLEADEE 126
I + G +P P++ PN+ ++F+V L G + EE
Sbjct: 125 ITCKPEYAYGSAGSP--PKIPPNATLVFEVELFEFKGEDLTEE 165
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 10 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G+Q + I G G + P G +Y M+ G+ DSS ++ +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
EG+ M G + +L I A+ G PG + P++ ++FDV L
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAY--GATGHPG--IIPPHATLVFDVEL 103
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 14/101 (13%)
Query: 24 PPVGFQVAANYVAMIPSGQIFDSSLE-------KGRPYIFRVGSGQVVKGLDEGILTMKT 76
P G V Y + G +FD++++ +P F+VG G+V++G DE +LTM
Sbjct: 17 PKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 76
Query: 77 GGKRRLYIPGPLAFPKGLVSAPGRP--RVAPNSPVIFDVSL 115
G K RL I A+ K G+P ++ PN+ + F+V L
Sbjct: 77 GEKARLEIEPEWAYGK-----KGQPDAKIPPNAKLTFEVEL 112
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRL 82
+P +G +V +Y + G FDSSL++ + F +G G+V+K D + TMK G R+
Sbjct: 45 TPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCRI 104
Query: 83 YIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
A+ SA P++ PN+ ++F+V L
Sbjct: 105 TCKPEYAYG----SAGSPPKIPPNATLVFEVEL 133
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 24 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLY 83
P +G +V +Y + G FDSSL++ + F +G G+V+K D I TMK G +
Sbjct: 47 PMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVG--EVCH 104
Query: 84 IPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
I + G +P P++ PN+ ++F+V L
Sbjct: 105 ITCKPEYAYGSAGSP--PKIPPNATLVFEVEL 134
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 24 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLY 83
P +G +V +Y + G FDSSL++ + F +G G+V+K D I TMK G +
Sbjct: 51 PMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVG--EVCH 108
Query: 84 IPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
I + G +P P++ PN+ ++F+V L
Sbjct: 109 ITCKPEYAYGSAGSP--PKIPPNATLVFEVEL 138
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 17 KVGQGP-SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 75
K GQG P G V +YV + +G FDSS ++G + F +G G V+KG D G+ TM
Sbjct: 22 KEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMT 81
Query: 76 TGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSL 115
G I + G +P P++ + +IF+V L
Sbjct: 82 KGEVAEFTIRSDYGY--GDAGSP--PKIPGGATLIFEVEL 117
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 9 SGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 68
G+ ++ G GP P +V YV +P G+IFD S + P FR+ S V+ G
Sbjct: 117 DGILMTELTPGTGPKPDANGRVEVRYVGRLPDGKIFDQSTQ---PQWFRLDS--VISGWT 171
Query: 69 EGILTMKTGGKRRLYIPGPLAFPKGLVSAPGR-PRVAPNSPVIFDVSL 115
+ M TG K RL IP A+ A G + P +P++F++ L
Sbjct: 172 SALQNMPTGAKWRLVIPSDQAY-----GAEGAGDLIDPFTPLVFEIEL 214
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 19 GQGPSPPVGFQVAANYVAMIPS-GQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTG 77
G+ +P G +V +YV + S G++FDSS E+ P+ F +G G+V+KG D + +M
Sbjct: 28 GEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKN 87
Query: 78 GKRRLYIPGPLAF-PKGL-VSAPGRPRVAPNSPVIFDVSL 115
K + + + +G S PG NS +IF++ L
Sbjct: 88 EKCSVRLDSKYGYGEEGCGESIPG------NSVLIFEIEL 121
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 13/77 (16%)
Query: 27 GFQVAANYVAMIPSGQIFDSSLEK-------------GRPYIFRVGSGQVVKGLDEGILT 73
G ++ +Y+ + SG +FD+S+E+ P F VG GQ+++G +E +L
Sbjct: 5 GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64
Query: 74 MKTGGKRRLYIPGPLAF 90
M+ G ++ + IP A+
Sbjct: 65 MEVGDEKTVKIPAEKAY 81
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 19 GQGPSPPVGFQVAANYVAMIPS-GQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTG 77
G+ P G +V +YV + S G++FDSS ++ P+ F + G+V+KG D + +M+
Sbjct: 29 GEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKN 88
Query: 78 GKRRLYIPGPLAF-PKGL-VSAPGRPRVAPNSPVIFDVSL 115
K + I + +G S PG NS ++F++ L
Sbjct: 89 EKCLVRIESMYGYGDEGCGESIPG------NSVLLFEIEL 122
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 19 GQGPSPPVGFQVAANYVAMIPS-GQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTG 77
G+ P G +V +YV + S G++FDSS ++ P+ F + G+V+KG D + +M+
Sbjct: 29 GEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKN 88
Query: 78 GKRRLYIPGPLAF-PKGL-VSAPGRPRVAPNSPVIFDVSL 115
K + I + +G S PG NS ++F++ L
Sbjct: 89 EKCLVRIESMYGYGDEGCGESIPG------NSVLLFEIEL 122
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 40 SGQIFDSSLEK--GRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSA 97
G +F S+ + G+P F +G + +KG D+G+ M G KR+L IP L + K
Sbjct: 46 DGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGK----- 100
Query: 98 PGRPRVAPNSPVIFDVSL 115
G+ ++ P S +IF++ L
Sbjct: 101 EGKGKIPPESTLIFNIDL 118
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 30 VAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLA 89
V ++ + G +S+ G+P +FR+G + +GL++ +L +K G K + A
Sbjct: 31 VLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAA 90
Query: 90 F 90
F
Sbjct: 91 F 91
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 44 FDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRV 103
FDS+ + P + ++G + G++ G+L+M+ G R A+ G + P P +
Sbjct: 62 FDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAY--GTLGCP--PLI 117
Query: 104 APNSPVIFDVSL 115
PN+ V+F++ L
Sbjct: 118 PPNTTVLFEIEL 129
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 59 GSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPK 92
G GQV+ GLDE IL M G +R + +P AF K
Sbjct: 49 GEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGK 82
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 53 PYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNS 107
P G GQV+ GLDE IL M G +R + +P AF K P + ++ P S
Sbjct: 43 PVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGK---RDPSKIKLIPLS 94
>pdb|1HXV|A Chain A, Ppiase Domain Of The Mycoplasma Genitalium Trigger Factor
Length = 113
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 51 GRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNSPVI 110
+ Y +GS +KG + G++ MK K+ L L FP + + + PV
Sbjct: 54 AQNYELTIGSNSFIKGFETGLIAMKVNQKKTL----ALTFP-----SDYHVKELQSKPVT 104
Query: 111 FDVSLEYIP 119
F+V L+ I
Sbjct: 105 FEVVLKAIK 113
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 16 IKVGQGPSPPVGFQVAANYVAMIPSGQI-FDSSLEKGRPYIFRVG-SGQVVKGLDEGILT 73
IK G G P +Y A + Q F+ + + +P +G + + GL G+ +
Sbjct: 56 IKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVAS 115
Query: 74 MKTGGKRRLYIPGPLAFPK-GLVSAPGRPRVAPNSPVIFDVSL 115
MK+G + +++ LA+ K G S P P P + ++++V +
Sbjct: 116 MKSGERALVHVGWELAYGKEGNFSFPNVP---PMADLLYEVEV 155
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 16 IKVGQGPSPPVGFQVAANYVAMIPSGQI-FDSSLEKGRPYIFRVG-SGQVVKGLDEGILT 73
IK G G P +Y A + Q F+ + + +P +G + + GL G+ +
Sbjct: 56 IKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVAS 115
Query: 74 MKTGGKRRLYIPGPLAFPK-GLVSAPGRPRVAPNSPVIFDVSL 115
MK+G + +++ LA+ K G S P P P + ++++V +
Sbjct: 116 MKSGERALVHVGWELAYGKEGNFSFPNVP---PMADLLYEVEV 155
>pdb|1NKG|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus
Length = 508
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 22/103 (21%)
Query: 17 KVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG-------QVVKGLDE 69
K+G+ P GF+ AAN + M PS DS + P + VGS V K ++
Sbjct: 344 KIGEWDGQPTGFRNAANQLRMHPS----DSRMSSWGPLTYTVGSSALTDFPMAVFKSVNN 399
Query: 70 GIL-----TMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNS 107
+ T G L I L+F A GRP+ NS
Sbjct: 400 PVTIKFTATSAQTGAATLRIGTTLSF------AGGRPQATINS 436
>pdb|2XHN|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|2XHN|B Chain B, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|3NJV|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Substrate Complex
Length = 508
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 22/103 (21%)
Query: 17 KVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG-------QVVKGLDE 69
K+G+ P GF+ AAN + M PS DS + P + VGS V K ++
Sbjct: 344 KIGEWDGQPTGFRNAANQLRMHPS----DSRMSSWGPLTYTVGSSALTDFPMAVFKSVNN 399
Query: 70 GIL-----TMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNS 107
+ T G L I L+F A GRP+ NS
Sbjct: 400 PVTIKFTATSAQTGAATLRIGTTLSF------AGGRPQATINS 436
>pdb|3NJX|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant
H210a
Length = 508
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 22/103 (21%)
Query: 17 KVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG-------QVVKGLDE 69
K+G+ P GF+ AAN + M PS DS + P + VGS V K ++
Sbjct: 344 KIGEWDGQPTGFRNAANQLRMHPS----DSRMSSWGPLTYTVGSSALTDFPMAVFKSVNN 399
Query: 70 GIL-----TMKTGGKRRLYIPGPLAFPKGLVSAPGRPRVAPNS 107
+ T G L I L+F A GRP+ NS
Sbjct: 400 PVTIKFTATSAQTGAATLRIGTTLSF------AGGRPQATINS 436
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 40 SGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAF 90
S + DS++ K P F +G+ Q++ GL++ +L + G + I A+
Sbjct: 24 SSIVLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAY 73
>pdb|2HHZ|A Chain A, Crystal Structure Of A Pyridoxamine 5'-phosphate
Oxidase-related Protein (ssuidraft_2804) From
Streptococcus Suis 89/1591 At 2.00 A Resolution
Length = 150
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 35 VAMIPSGQIFDSSLEKGRPYIFRVGSGQ 62
V I +G F SL +G YIF +G G+
Sbjct: 116 VFQIYAGHGFYHSLTQGHKYIFSIGQGE 143
>pdb|3OG4|B Chain B, The Crystal Structure Of Human Interferon Lambda 1
Complexed With Its High Affinity Receptor In Space Group
P21212
pdb|3OG6|B Chain B, The Crystal Structure Of Human Interferon Lambda 1
Complexed With Its High Affinity Receptor In Space Group
P212121
Length = 226
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 98 PGRPRVAPNSPVI-----FDVSLEYIPGL 121
PGRPR+AP V F V L ++PGL
Sbjct: 1 PGRPRLAPPQNVTLLSQNFSVYLTWLPGL 29
>pdb|3K4I|A Chain A, Crystal Structure Of Uncharacterized Protein Pspto_3204
From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K4I|B Chain B, Crystal Structure Of Uncharacterized Protein Pspto_3204
From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K4I|C Chain C, Crystal Structure Of Uncharacterized Protein Pspto_3204
From Pseudomonas Syringae Pv. Tomato Str. Dc3000
Length = 244
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 27 GFQVAANYVAMIPSGQIFDSS 47
GF+ AANY+ +PSG + SS
Sbjct: 70 GFRGAANYIDQVPSGSVIVSS 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.140 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,127,610
Number of Sequences: 62578
Number of extensions: 174898
Number of successful extensions: 424
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 74
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)