Query 033143
Match_columns 126
No_of_seqs 147 out of 1063
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 10:21:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 2.8E-35 6.1E-40 198.0 13.2 110 4-119 96-205 (205)
2 KOG0544 FKBP-type peptidyl-pro 100.0 2.8E-33 6E-38 166.1 12.0 106 10-119 2-108 (108)
3 PRK11570 peptidyl-prolyl cis-t 100.0 6.4E-31 1.4E-35 180.7 14.6 110 4-119 97-206 (206)
4 KOG0549 FKBP-type peptidyl-pro 100.0 1.8E-30 3.8E-35 171.7 13.7 114 5-122 64-179 (188)
5 TIGR03516 ppisom_GldI peptidyl 100.0 3.8E-30 8.2E-35 173.2 14.8 114 2-120 62-177 (177)
6 PRK10902 FKBP-type peptidyl-pr 100.0 2.3E-28 4.9E-33 173.6 15.2 113 4-123 141-253 (269)
7 KOG0552 FKBP-type peptidyl-pro 100.0 1.3E-28 2.7E-33 169.2 12.8 109 5-119 116-226 (226)
8 PF00254 FKBP_C: FKBP-type pep 99.9 6.9E-25 1.5E-29 133.9 10.7 90 23-116 4-94 (94)
9 PRK15095 FKBP-type peptidyl-pr 99.8 3.6E-20 7.7E-25 122.6 9.8 70 23-92 4-73 (156)
10 KOG0543 FKBP-type peptidyl-pro 99.8 2.4E-19 5.1E-24 131.5 13.4 105 8-119 83-190 (397)
11 COG1047 SlpA FKBP-type peptidy 99.8 7.1E-18 1.5E-22 112.0 9.4 70 23-92 2-71 (174)
12 PRK10737 FKBP-type peptidyl-pr 99.7 1.7E-17 3.7E-22 112.9 9.2 69 23-92 2-70 (196)
13 KOG0543 FKBP-type peptidyl-pro 99.4 1.2E-12 2.7E-17 96.5 6.7 82 17-117 1-83 (397)
14 TIGR00115 tig trigger factor. 99.3 8.4E-11 1.8E-15 88.6 11.7 90 23-124 146-235 (408)
15 PRK01490 tig trigger factor; P 99.2 3.9E-10 8.5E-15 85.7 11.6 90 23-124 157-246 (435)
16 COG0544 Tig FKBP-type peptidyl 99.1 5.4E-10 1.2E-14 84.8 9.7 89 24-124 158-246 (441)
17 KOG0545 Aryl-hydrocarbon recep 98.6 2.3E-08 5.1E-13 70.3 1.5 82 5-86 6-91 (329)
18 KOG0549 FKBP-type peptidyl-pro 98.0 6.3E-06 1.4E-10 55.4 3.3 36 57-92 2-37 (188)
19 PRK05892 nucleoside diphosphat 86.1 7.9 0.00017 25.7 7.7 26 62-87 120-145 (158)
20 PRK00226 greA transcription el 79.1 3.3 7.2E-05 27.3 3.5 26 62-87 121-146 (157)
21 TIGR01461 greB transcription e 74.0 15 0.00032 24.4 5.5 25 63-87 119-143 (156)
22 PF01272 GreA_GreB: Transcript 68.9 6.6 0.00014 22.5 2.7 25 63-87 42-66 (77)
23 PHA02122 hypothetical protein 65.3 12 0.00027 20.3 3.0 20 25-45 39-58 (65)
24 PRK05753 nucleoside diphosphat 63.8 37 0.0008 21.9 6.8 25 62-86 90-114 (137)
25 TIGR01462 greA transcription e 61.1 28 0.00061 22.7 4.8 26 62-87 116-141 (151)
26 PRK01885 greB transcription el 61.0 19 0.00042 23.8 4.0 25 63-87 121-145 (157)
27 PRK11536 6-N-hydroxylaminopuri 57.6 9 0.0002 27.0 2.1 27 6-35 139-165 (223)
28 COG2258 Uncharacterized protei 56.9 9.3 0.0002 26.7 2.0 28 7-37 137-164 (210)
29 PF09122 DUF1930: Domain of un 53.7 25 0.00054 19.7 3.0 23 65-87 35-57 (68)
30 COG0024 Map Methionine aminope 49.6 66 0.0014 23.2 5.4 51 23-80 86-146 (255)
31 PF05688 DUF824: Salmonella re 48.3 41 0.00088 17.6 3.9 34 23-61 8-41 (47)
32 PF09465 LBR_tudor: Lamin-B re 46.8 36 0.00079 18.5 2.9 17 105-121 17-33 (55)
33 cd01088 MetAP2 Methionine Amin 44.3 63 0.0014 23.5 4.8 53 22-81 69-127 (291)
34 TIGR00501 met_pdase_II methion 43.6 74 0.0016 23.2 5.1 52 22-80 73-130 (295)
35 PRK14720 transcript cleavage f 43.2 1.4E+02 0.0031 25.8 7.1 25 62-86 866-890 (906)
36 TIGR02925 cis_trans_EpsD pepti 42.3 58 0.0013 22.5 4.3 29 60-90 189-217 (232)
37 cd01090 Creatinase Creatine am 41.1 97 0.0021 21.5 5.2 53 22-81 75-136 (228)
38 PRK12450 foldase protein PrsA; 41.0 54 0.0012 24.1 4.1 36 56-91 195-233 (309)
39 PRK08671 methionine aminopepti 40.5 86 0.0019 22.8 5.0 51 23-80 71-127 (291)
40 cd01089 PA2G4-like Related to 40.1 1.2E+02 0.0027 20.9 5.8 52 23-81 82-147 (228)
41 COG0782 Uncharacterized conser 39.1 1.1E+02 0.0024 20.1 6.4 24 62-85 114-137 (151)
42 PTZ00053 methionine aminopepti 38.8 59 0.0013 25.7 4.1 50 23-79 233-288 (470)
43 COG0048 RpsL Ribosomal protein 37.9 81 0.0017 20.2 3.9 26 8-33 64-89 (129)
44 PRK06342 transcription elongat 37.2 77 0.0017 21.1 4.0 21 62-82 129-149 (160)
45 PF00970 FAD_binding_6: Oxidor 35.7 92 0.002 18.1 7.7 76 6-86 9-94 (99)
46 COG0425 SirA Predicted redox p 33.7 64 0.0014 18.6 2.8 24 67-90 22-45 (78)
47 PRK00809 hypothetical protein; 33.4 75 0.0016 20.7 3.4 25 63-87 24-48 (144)
48 TIGR00495 crvDNA_42K 42K curve 33.3 1.1E+02 0.0025 23.4 4.8 52 23-81 100-165 (389)
49 PRK02268 hypothetical protein; 32.9 31 0.00067 22.6 1.5 26 63-88 25-50 (141)
50 PRK12897 methionine aminopepti 32.4 1.8E+02 0.0039 20.4 5.6 53 22-81 83-144 (248)
51 PF11012 DUF2850: Protein of u 31.1 88 0.0019 18.3 3.1 40 23-62 12-52 (79)
52 cd03420 SirA_RHOD_Pry_redox Si 30.6 74 0.0016 17.6 2.7 24 67-90 16-39 (69)
53 PF07076 DUF1344: Protein of u 30.3 1E+02 0.0023 17.1 3.7 34 5-38 19-52 (61)
54 KOG3553 Tax interaction protei 29.5 50 0.0011 20.5 1.9 28 3-30 53-83 (124)
55 PF02149 KA1: Kinase associate 28.8 94 0.002 16.1 3.1 15 106-120 2-16 (47)
56 PRK12426 elongation factor P; 28.5 2E+02 0.0043 19.8 4.9 54 31-84 36-115 (185)
57 cd03422 YedF YedF is a bacteri 27.5 83 0.0018 17.4 2.6 23 67-89 16-38 (69)
58 PF00639 Rotamase: PPIC-type P 27.1 79 0.0017 18.5 2.6 26 58-83 57-82 (95)
59 PF12690 BsuPI: Intracellular 25.9 1.4E+02 0.0031 17.3 5.0 14 73-86 55-68 (82)
60 PLN03158 methionine aminopepti 25.8 2.5E+02 0.0054 21.6 5.6 51 22-79 216-275 (396)
61 COG4922 Uncharacterized protei 25.5 1.7E+02 0.0037 18.6 3.8 43 24-71 71-114 (129)
62 TIGR00500 met_pdase_I methioni 25.3 1.9E+02 0.0041 20.1 4.6 51 22-79 82-141 (247)
63 PRK00299 sulfur transfer prote 24.4 1E+02 0.0022 17.7 2.7 24 67-90 26-49 (81)
64 PF01878 EVE: EVE domain; Int 24.0 65 0.0014 20.5 1.9 17 70-86 36-52 (143)
65 PRK12896 methionine aminopepti 23.9 2.6E+02 0.0056 19.5 5.4 51 22-79 89-148 (255)
66 TIGR00686 phnA alkylphosphonat 23.8 1.1E+02 0.0023 19.1 2.7 25 14-38 41-65 (109)
67 PF11454 DUF3016: Protein of u 23.2 1.2E+02 0.0027 19.8 3.0 20 29-48 87-106 (141)
68 cd03423 SirA SirA (also known 22.5 1.4E+02 0.0031 16.4 2.9 23 67-89 16-38 (69)
69 PF01206 TusA: Sulfurtransfera 21.9 1.1E+02 0.0024 16.7 2.4 24 67-90 17-40 (70)
70 COG4013 Uncharacterized protei 21.3 2E+02 0.0043 17.2 4.1 40 23-66 20-59 (91)
71 PRK12318 methionine aminopepti 21.3 3.3E+02 0.0072 19.8 5.4 51 22-79 124-183 (291)
72 TIGR02993 ectoine_eutD ectoine 21.3 2.4E+02 0.0052 21.4 4.7 52 23-81 237-297 (391)
73 PF03831 PhnA: PhnA protein; 21.3 42 0.00092 18.3 0.5 22 17-38 3-24 (56)
74 PRK08051 fre FMN reductase; Va 20.9 2.9E+02 0.0063 19.0 6.8 82 6-89 12-95 (232)
75 TIGR03096 nitroso_cyanin nitro 20.9 1.7E+02 0.0037 19.0 3.3 63 8-89 43-111 (135)
76 TIGR03595 Obg_CgtA_exten Obg f 20.6 1E+02 0.0023 17.3 2.1 18 65-82 43-62 (69)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-35 Score=198.04 Aligned_cols=110 Identities=41% Similarity=0.695 Sum_probs=103.3
Q ss_pred eeEcCCCcEEEEEEcCCCCCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEEE
Q 033143 4 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLY 83 (126)
Q Consensus 4 ~~~~~~g~~~~i~~~G~G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v~ 83 (126)
..++++|++|++++.|+|..|+.+|.|++||++++.||++|||++.+++|+.|.+| .+|+||.++|.+|++|++|+++
T Consensus 96 v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~ 173 (205)
T COG0545 96 VKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLT 173 (205)
T ss_pred ceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence 46799999999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEeec
Q 033143 84 IPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIP 119 (126)
Q Consensus 84 ip~~~ayg~~~~~~~~~~~ip~~~~l~~~i~l~~~~ 119 (126)
|||++|||+ .+.++.||||++|+|+|+|+++.
T Consensus 174 IP~~laYG~----~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 174 IPPELAYGE----RGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred eCchhccCc----CCCCCCCCCCCeEEEEEEEEecC
Confidence 999999995 44455699999999999999874
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-33 Score=166.13 Aligned_cols=106 Identities=34% Similarity=0.660 Sum_probs=99.7
Q ss_pred CcEEEEEEcCCCCC-CCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEEEEcCCC
Q 033143 10 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPL 88 (126)
Q Consensus 10 g~~~~i~~~G~G~~-~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v~ip~~~ 88 (126)
|+..+++.+|+|.. |+.||.|++||++.+.||+.|||+.+++.|+.|.+|.+++|.||++++..|.+|+++++.|+|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 68899999999965 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEEEEeec
Q 033143 89 AFPKGLVSAPGRPRVAPNSPVIFDVSLEYIP 119 (126)
Q Consensus 89 ayg~~~~~~~~~~~ip~~~~l~~~i~l~~~~ 119 (126)
|||. .+-+..||||++|+|+|||++++
T Consensus 82 aYG~----~G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 82 AYGP----RGHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred ccCC----CCCCCccCCCcEEEEEEEEEecC
Confidence 9996 44567799999999999999874
No 3
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.97 E-value=6.4e-31 Score=180.66 Aligned_cols=110 Identities=34% Similarity=0.542 Sum_probs=102.2
Q ss_pred eeEcCCCcEEEEEEcCCCCCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEEE
Q 033143 4 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLY 83 (126)
Q Consensus 4 ~~~~~~g~~~~i~~~G~G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v~ 83 (126)
+.++++|++|+++++|+|..|+.+|.|.+||++++.||++|++++.++.|+.|.++ .+++||+++|.+|++|++++|+
T Consensus 97 v~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~ 174 (206)
T PRK11570 97 VNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT 174 (206)
T ss_pred cEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE
Confidence 57899999999999999999999999999999999999999999988889999995 7999999999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEeec
Q 033143 84 IPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIP 119 (126)
Q Consensus 84 ip~~~ayg~~~~~~~~~~~ip~~~~l~~~i~l~~~~ 119 (126)
|||++|||+ .+..+.||||++|+|+|+|++|.
T Consensus 175 IP~~lAYG~----~g~~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 175 IPHELAYGE----RGAGASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred ECHHHcCCC----CCCCCCcCCCCeEEEEEEEEEEC
Confidence 999999996 33346799999999999999873
No 4
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-30 Score=171.67 Aligned_cols=114 Identities=32% Similarity=0.548 Sum_probs=101.4
Q ss_pred eEcCCCcEEEEEEcCC--CCCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEE
Q 033143 5 VTTESGLQYKDIKVGQ--GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRL 82 (126)
Q Consensus 5 ~~~~~g~~~~i~~~G~--G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v 82 (126)
..+.+.++..++++-. ..+.+.||.+++||++.+.||+.|||||.+++|++|.+|.+++++||+.+|.+||+||++++
T Consensus 64 ~~~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl 143 (188)
T KOG0549|consen 64 WNPDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL 143 (188)
T ss_pred cCCCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEE
Confidence 3456778888887633 23488999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEeecCCC
Q 033143 83 YIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIPGLE 122 (126)
Q Consensus 83 ~ip~~~ayg~~~~~~~~~~~ip~~~~l~~~i~l~~~~~~~ 122 (126)
+|||+++||+ .+.++.||++++|+|+|||+++....
T Consensus 144 ~IPp~LgYG~----~G~~~~IP~~A~LiFdiELv~i~~~~ 179 (188)
T KOG0549|consen 144 IIPPHLGYGE----RGAPPKIPGDAVLIFDIELVKIERGP 179 (188)
T ss_pred ecCccccCcc----CCCCCCCCCCeeEEEEEEEEEeecCC
Confidence 9999999996 55566799999999999999998753
No 5
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.97 E-value=3.8e-30 Score=173.16 Aligned_cols=114 Identities=26% Similarity=0.414 Sum_probs=103.0
Q ss_pred CCeeEcCCCcEEEEEEc--CCCCCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcE
Q 033143 2 VPMVTTESGLQYKDIKV--GQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGK 79 (126)
Q Consensus 2 i~~~~~~~g~~~~i~~~--G~G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~ 79 (126)
..+.++++|++|.++++ |+|..|+.||.|++||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||+
T Consensus 62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~ 140 (177)
T TIGR03516 62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGET 140 (177)
T ss_pred CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCE
Confidence 35688999999999976 66677999999999999999999999999863 5999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEeecC
Q 033143 80 RRLYIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIPG 120 (126)
Q Consensus 80 ~~v~ip~~~ayg~~~~~~~~~~~ip~~~~l~~~i~l~~~~~ 120 (126)
++|++||++|||. .+..+.||||++|+|+|+|+++.+
T Consensus 141 ~~~~iP~~~AYG~----~g~~~~Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 141 ATFLFPSHKAYGY----YGDQNKIGPNLPIISTVTLLNIKP 177 (177)
T ss_pred EEEEECHHHcCCC----CCCCCCcCcCCcEEEEEEEEEecC
Confidence 9999999999996 444567999999999999999863
No 6
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.96 E-value=2.3e-28 Score=173.62 Aligned_cols=113 Identities=38% Similarity=0.615 Sum_probs=103.2
Q ss_pred eeEcCCCcEEEEEEcCCCCCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEEE
Q 033143 4 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLY 83 (126)
Q Consensus 4 ~~~~~~g~~~~i~~~G~G~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v~ 83 (126)
+.++++|++|+++++|+|..|+.||.|.|||++++.||++|++++.++.|+.|.+ +.+++||+++|.+|++|+++.|+
T Consensus 141 v~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~ 218 (269)
T PRK10902 141 VKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLV 218 (269)
T ss_pred cEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEE
Confidence 5689999999999999999999999999999999999999999998888999998 46999999999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEeecCCCC
Q 033143 84 IPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIPGLEA 123 (126)
Q Consensus 84 ip~~~ayg~~~~~~~~~~~ip~~~~l~~~i~l~~~~~~~~ 123 (126)
||++++||. .+.+.||||++|+|+|+|+++.+...
T Consensus 219 IP~~laYG~-----~g~~gIppns~LvfeVeLl~V~~~~~ 253 (269)
T PRK10902 219 IPPELAYGK-----AGVPGIPANSTLVFDVELLDVKPAPK 253 (269)
T ss_pred ECchhhCCC-----CCCCCCCCCCcEEEEEEEEEeccCcc
Confidence 999999995 23346999999999999999976543
No 7
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-28 Score=169.24 Aligned_cols=109 Identities=45% Similarity=0.874 Sum_probs=101.4
Q ss_pred eEcCCCcEEEEEEcCCCCCCCCCCEEEEEEEEEcC-CCCEEecccCCCccEE-EEeCCCCcchhHHHHhcCCCcCcEEEE
Q 033143 5 VTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIP-SGQIFDSSLEKGRPYI-FRVGSGQVVKGLDEGILTMKTGGKRRL 82 (126)
Q Consensus 5 ~~~~~g~~~~i~~~G~G~~~~~gd~V~v~y~~~~~-~g~~~~st~~~~~~~~-~~~g~~~~~~gl~~~l~~m~~G~~~~v 82 (126)
.++++|++|+.++.|+|+.+..|+.|.+||.+++. +|.+|++++. +.|+. |.+|.+++|+||+.++.+|++|.+++|
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 46899999999999999999999999999999998 9999999986 46888 999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEeec
Q 033143 83 YIPGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIP 119 (126)
Q Consensus 83 ~ip~~~ayg~~~~~~~~~~~ip~~~~l~~~i~l~~~~ 119 (126)
+|||++|||. .+.+.||||++|+|+|+|+++.
T Consensus 195 iIPp~lgYg~-----~g~~~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 195 IIPPELGYGK-----KGVPEIPPNSTLVFDVELLSVK 226 (226)
T ss_pred EeCccccccc-----cCcCcCCCCCcEEEEEEEEecC
Confidence 9999999994 4456899999999999999873
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.93 E-value=6.9e-25 Score=133.94 Aligned_cols=90 Identities=40% Similarity=0.812 Sum_probs=82.6
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEEEEcCCCCCCCCCCCCCC-CC
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPG-RP 101 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v~ip~~~ayg~~~~~~~~-~~ 101 (126)
+++.||.|++||++++.+|+.|++++....|+.|.+|.+++++||+++|.+|++|++++|++|++++||+ .+. ..
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~----~~~~~~ 79 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGE----KGLEPP 79 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTT----TTBCTT
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCc----cccCCC
Confidence 3899999999999999899999999887889999999999999999999999999999999999999996 222 34
Q ss_pred CCCCCCceEEEEEEE
Q 033143 102 RVAPNSPVIFDVSLE 116 (126)
Q Consensus 102 ~ip~~~~l~~~i~l~ 116 (126)
.||++++|+|+|+|+
T Consensus 80 ~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 80 KIPPNSTLVFEIELL 94 (94)
T ss_dssp TBTTTSEEEEEEEEE
T ss_pred CcCCCCeEEEEEEEC
Confidence 599999999999986
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.83 E-value=3.6e-20 Score=122.61 Aligned_cols=70 Identities=26% Similarity=0.502 Sum_probs=66.9
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEEEEcCCCCCCC
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPK 92 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v~ip~~~ayg~ 92 (126)
.++.++.|++||++++.||++|++|+..+.|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||+
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~ 73 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGV 73 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCC
Confidence 5789999999999999999999999877789999999999999999999999999999999999999995
No 10
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.4e-19 Score=131.54 Aligned_cols=105 Identities=24% Similarity=0.425 Sum_probs=93.4
Q ss_pred CCCcEEEEEEcCCC--CCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCC-CCcchhHHHHhcCCCcCcEEEEEE
Q 033143 8 ESGLQYKDIKVGQG--PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGS-GQVVKGLDEGILTMKTGGKRRLYI 84 (126)
Q Consensus 8 ~~g~~~~i~~~G~G--~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~-~~~~~gl~~~l~~m~~G~~~~v~i 84 (126)
+.+|.++|+++|.| ..|..|..|.+||.+++.++ +|++.. ..+.|..|+ ..++.||+.+|..|++|+.+.|.|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i 158 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTI 158 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc---cceEEecCCccchhHHHHHHHHhcCccceEEEEe
Confidence 89999999999999 45999999999999999766 777752 347888887 479999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCceEEEEEEEeec
Q 033143 85 PGPLAFPKGLVSAPGRPRVAPNSPVIFDVSLEYIP 119 (126)
Q Consensus 85 p~~~ayg~~~~~~~~~~~ip~~~~l~~~i~l~~~~ 119 (126)
+|.++||+ ....++.||||++|.|+|+|+++.
T Consensus 159 ~~~YayG~---~~~~~p~IPPnA~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 159 DPKYAYGE---EGGEPPLIPPNATLLYEVELLDFE 190 (397)
T ss_pred CcccccCC---CCCCCCCCCCCceEEEEEEEEeee
Confidence 99999994 255578899999999999999998
No 11
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.1e-18 Score=112.02 Aligned_cols=70 Identities=30% Similarity=0.476 Sum_probs=66.3
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEEEEcCCCCCCC
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPK 92 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v~ip~~~ayg~ 92 (126)
.++.||.|+++|++++.||+++|+|.....|+.|.+|.+++++||++||.+|.+|++..|.|||+.|||+
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe 71 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGE 71 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCC
Confidence 4788999999999999999999999775679999999999999999999999999999999999999995
No 12
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.74 E-value=1.7e-17 Score=112.93 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=65.0
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEEEEcCCCCCCC
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPK 92 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v~ip~~~ayg~ 92 (126)
+++.++.|+++|++++.+|+++++|+. ..|+.|.+|.++++|+|+++|.+|++|+++.|.|||+.|||+
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe 70 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQ 70 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCC
Confidence 367899999999999999999999975 479999999999999999999999999999999999999995
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.2e-12 Score=96.49 Aligned_cols=82 Identities=38% Similarity=0.685 Sum_probs=74.2
Q ss_pred EcCCCCC-CCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEEEEcCCCCCCCCCC
Q 033143 17 KVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLV 95 (126)
Q Consensus 17 ~~G~G~~-~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v~ip~~~ayg~~~~ 95 (126)
++|+|.. |..||.|.+||++++.||+.|||+.+ +.|+.|.+|.++++.||..++..|+. |+
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~--- 62 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GE--- 62 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cc---
Confidence 4788876 99999999999999999999999988 78999999999999999999999998 43
Q ss_pred CCCCCCCCCCCCceEEEEEEEe
Q 033143 96 SAPGRPRVAPNSPVIFDVSLEY 117 (126)
Q Consensus 96 ~~~~~~~ip~~~~l~~~i~l~~ 117 (126)
...++.||++++|.|+|+|++
T Consensus 63 -~~~pp~ip~~a~l~fe~el~D 83 (397)
T KOG0543|consen 63 -AGSPPKIPSNATLLFEVELLD 83 (397)
T ss_pred -cCCCCCCCCCcceeeeecccC
Confidence 566788999999999999853
No 14
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.27 E-value=8.4e-11 Score=88.63 Aligned_cols=90 Identities=20% Similarity=0.428 Sum_probs=77.7
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEEEEcCCCCCCCCCCCCCCCCC
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPR 102 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v~ip~~~ayg~~~~~~~~~~~ 102 (126)
.++.||.|+++|+++. +|..++++. ..++.|.+|.+.+++||+++|.||++|+++.|.++....|+. .
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~----~----- 213 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHA----E----- 213 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCc----c-----
Confidence 4789999999999987 899988864 368999999999999999999999999999999998888863 1
Q ss_pred CCCCCceEEEEEEEeecCCCCC
Q 033143 103 VAPNSPVIFDVSLEYIPGLEAD 124 (126)
Q Consensus 103 ip~~~~l~~~i~l~~~~~~~~~ 124 (126)
-.+|.++.|.|+|.+|......
T Consensus 214 ~~~gk~~~f~v~i~~I~~~~~p 235 (408)
T TIGR00115 214 ELAGKEATFKVTVKEVKEKELP 235 (408)
T ss_pred cCCCCeEEEEEEEEEeccCCCC
Confidence 2468899999999999876543
No 15
>PRK01490 tig trigger factor; Provisional
Probab=99.19 E-value=3.9e-10 Score=85.67 Aligned_cols=90 Identities=20% Similarity=0.413 Sum_probs=76.7
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEEEEcCCCCCCCCCCCCCCCCC
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPR 102 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v~ip~~~ayg~~~~~~~~~~~ 102 (126)
.++.||.|+++|+++. +|..++++. ..++.|.+|.+++++||+++|.||++|+++.|-++....|+. .
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~----~----- 224 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHA----E----- 224 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccc----c-----
Confidence 4799999999999998 888888763 368999999999999999999999999999999888777752 1
Q ss_pred CCCCCceEEEEEEEeecCCCCC
Q 033143 103 VAPNSPVIFDVSLEYIPGLEAD 124 (126)
Q Consensus 103 ip~~~~l~~~i~l~~~~~~~~~ 124 (126)
-.++.+..|.|+|.+++.....
T Consensus 225 ~lagk~~~f~v~v~~V~~~~~p 246 (435)
T PRK01490 225 DLAGKEATFKVTVKEVKEKELP 246 (435)
T ss_pred cCCCCeEEEEEEEEEeccCCCC
Confidence 2467888999999999876543
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.4e-10 Score=84.81 Aligned_cols=89 Identities=17% Similarity=0.388 Sum_probs=73.6
Q ss_pred CCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEEEEcCCCCCCCCCCCCCCCCCC
Q 033143 24 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPKGLVSAPGRPRV 103 (126)
Q Consensus 24 ~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v~ip~~~ayg~~~~~~~~~~~i 103 (126)
++.||.|+|+|.++. ||..|.... ...+.+.+|+++++|||+++|.||+.|++..|-+.....|.+ . -
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~--ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a----~-----~ 225 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGK--AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHA----E-----E 225 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCcc--ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccch----h-----H
Confidence 899999999999977 899888873 457999999999999999999999999998866555555542 1 2
Q ss_pred CCCCceEEEEEEEeecCCCCC
Q 033143 104 APNSPVIFDVSLEYIPGLEAD 124 (126)
Q Consensus 104 p~~~~l~~~i~l~~~~~~~~~ 124 (126)
..|.+..|.|+|..|..+...
T Consensus 226 LaGK~a~F~V~vkeVk~~elp 246 (441)
T COG0544 226 LAGKEATFKVKVKEVKKRELP 246 (441)
T ss_pred hCCCceEEEEEEEEEeecCCC
Confidence 467788999999999877654
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.3e-08 Score=70.34 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=72.5
Q ss_pred eEcCCCcEEEEEEcCCCCC--CCCCCEEEEEEEEEcC--CCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEE
Q 033143 5 VTTESGLQYKDIKVGQGPS--PPVGFQVAANYVAMIP--SGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKR 80 (126)
Q Consensus 5 ~~~~~g~~~~i~~~G~G~~--~~~gd~V~v~y~~~~~--~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~ 80 (126)
.....|++++++..|+|.- ..+|..|.|||..... .++++|+++..++|..+.+|...-++-|+..|..|++++..
T Consensus 6 ~l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 6 LLNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVA 85 (329)
T ss_pred hccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence 3456799999999999976 5699999999999866 46789999999999999999988899999999999999999
Q ss_pred EEEEcC
Q 033143 81 RLYIPG 86 (126)
Q Consensus 81 ~v~ip~ 86 (126)
.|.|.-
T Consensus 86 qF~~d~ 91 (329)
T KOG0545|consen 86 QFWCDT 91 (329)
T ss_pred Hhhhhh
Confidence 988764
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=6.3e-06 Score=55.37 Aligned_cols=36 Identities=36% Similarity=0.672 Sum_probs=33.6
Q ss_pred EeCCCCcchhHHHHhcCCCcCcEEEEEEcCCCCCCC
Q 033143 57 RVGSGQVVKGLDEGILTMKTGGKRRLYIPGPLAFPK 92 (126)
Q Consensus 57 ~~g~~~~~~gl~~~l~~m~~G~~~~v~ip~~~ayg~ 92 (126)
.+|.+.++++++.+|.+||.|+++++++||+++||.
T Consensus 2 ~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~ 37 (188)
T KOG0549|consen 2 TLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGE 37 (188)
T ss_pred cccceEEecCHHHHhhhhhccccceeccCCcccccc
Confidence 467788999999999999999999999999999984
No 19
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=86.07 E-value=7.9 Score=25.72 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=21.4
Q ss_pred CcchhHHHHhcCCCcCcEEEEEEcCC
Q 033143 62 QVVKGLDEGILTMKTGGKRRLYIPGP 87 (126)
Q Consensus 62 ~~~~gl~~~l~~m~~G~~~~v~ip~~ 87 (126)
.....|-.||.|.++||.+.+..|..
T Consensus 120 S~~SPlG~ALlGk~vGD~v~v~~p~g 145 (158)
T PRK05892 120 TADSPLGQALAGHQAGDTVTYSTPQG 145 (158)
T ss_pred ccCCHHHHHHhCCCCCCEEEEEcCCC
Confidence 34557999999999999999877663
No 20
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=79.08 E-value=3.3 Score=27.32 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=21.8
Q ss_pred CcchhHHHHhcCCCcCcEEEEEEcCC
Q 033143 62 QVVKGLDEGILTMKTGGKRRLYIPGP 87 (126)
Q Consensus 62 ~~~~gl~~~l~~m~~G~~~~v~ip~~ 87 (126)
.+...+-.+|.|.++|+.+.+..|..
T Consensus 121 S~~SPlG~aLlGk~~Gd~v~~~~p~g 146 (157)
T PRK00226 121 SIESPIARALIGKKVGDTVEVTTPGG 146 (157)
T ss_pred ccCChHHHHHhCCCCCCEEEEEcCCC
Confidence 44567999999999999999987764
No 21
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=74.02 E-value=15 Score=24.36 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.3
Q ss_pred cchhHHHHhcCCCcCcEEEEEEcCC
Q 033143 63 VVKGLDEGILTMKTGGKRRLYIPGP 87 (126)
Q Consensus 63 ~~~gl~~~l~~m~~G~~~~v~ip~~ 87 (126)
....+..||.|.++||.+.+..|..
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~g 143 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPAG 143 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCCC
Confidence 4567999999999999999977664
No 22
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=68.85 E-value=6.6 Score=22.53 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=19.4
Q ss_pred cchhHHHHhcCCCcCcEEEEEEcCC
Q 033143 63 VVKGLDEGILTMKTGGKRRLYIPGP 87 (126)
Q Consensus 63 ~~~gl~~~l~~m~~G~~~~v~ip~~ 87 (126)
....|..||.|.++||.+.+.+|..
T Consensus 42 ~~SPLG~ALlG~~~Gd~v~~~~~~g 66 (77)
T PF01272_consen 42 IDSPLGKALLGKKVGDEVEVELPGG 66 (77)
T ss_dssp TTSHHHHHHTT-BTT-EEEEEETTB
T ss_pred ecCHHHHHhcCCCCCCEEEEEeCCc
Confidence 4457999999999999999988764
No 23
>PHA02122 hypothetical protein
Probab=65.29 E-value=12 Score=20.34 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=16.2
Q ss_pred CCCCEEEEEEEEEcCCCCEEe
Q 033143 25 PVGFQVAANYVAMIPSGQIFD 45 (126)
Q Consensus 25 ~~gd~V~v~y~~~~~~g~~~~ 45 (126)
..||.|.++|.+.. +|+.|-
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEE
Confidence 47899999999998 676653
No 24
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=63.80 E-value=37 Score=21.91 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.1
Q ss_pred CcchhHHHHhcCCCcCcEEEEEEcC
Q 033143 62 QVVKGLDEGILTMKTGGKRRLYIPG 86 (126)
Q Consensus 62 ~~~~gl~~~l~~m~~G~~~~v~ip~ 86 (126)
++...+..||.|.++|+.+.+..|.
T Consensus 90 Si~SPlG~ALlG~~~Gd~v~v~~p~ 114 (137)
T PRK05753 90 SVLAPVGAALLGLSVGQSIDWPLPG 114 (137)
T ss_pred cccCHHHHHHcCCCCCCEEEEECCC
Confidence 4566799999999999999987665
No 25
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=61.09 E-value=28 Score=22.74 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.1
Q ss_pred CcchhHHHHhcCCCcCcEEEEEEcCC
Q 033143 62 QVVKGLDEGILTMKTGGKRRLYIPGP 87 (126)
Q Consensus 62 ~~~~gl~~~l~~m~~G~~~~v~ip~~ 87 (126)
++...+..||.|.++||.+.+..|..
T Consensus 116 S~~SPlG~ALlG~~~Gd~v~v~~p~g 141 (151)
T TIGR01462 116 SIDSPLGKALIGKKVGDVVEVQTPKG 141 (151)
T ss_pred cCCCHHHHHHcCCCCCCEEEEEeCCC
Confidence 45667999999999999999987664
No 26
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=61.01 E-value=19 Score=23.81 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=21.2
Q ss_pred cchhHHHHhcCCCcCcEEEEEEcCC
Q 033143 63 VVKGLDEGILTMKTGGKRRLYIPGP 87 (126)
Q Consensus 63 ~~~gl~~~l~~m~~G~~~~v~ip~~ 87 (126)
+...|..||.|.++||.+.+.+|..
T Consensus 121 ~~SPlG~ALlGk~vGd~v~v~~p~g 145 (157)
T PRK01885 121 IDSPMARALLKKEVGDEVTVNTPAG 145 (157)
T ss_pred ccCHHHHHHhCCCCCCEEEEEcCCC
Confidence 3557999999999999999987764
No 27
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=57.59 E-value=9 Score=27.02 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=22.1
Q ss_pred EcCCCcEEEEEEcCCCCCCCCCCEEEEEEE
Q 033143 6 TTESGLQYKDIKVGQGPSPPVGFQVAANYV 35 (126)
Q Consensus 6 ~~~~g~~~~i~~~G~G~~~~~gd~V~v~y~ 35 (126)
+..+|.|++|+++|. +..||.|++-=.
T Consensus 139 ~g~~G~Y~RVL~~G~---V~~GD~v~l~~r 165 (223)
T PRK11536 139 SGKCGWLYRVIAPGK---VSADAPLELVSR 165 (223)
T ss_pred hCCcEEEEEEECCcE---EcCCCEEEEEeC
Confidence 346799999999998 888998877544
No 28
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.91 E-value=9.3 Score=26.69 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=23.5
Q ss_pred cCCCcEEEEEEcCCCCCCCCCCEEEEEEEEE
Q 033143 7 TESGLQYKDIKVGQGPSPPVGFQVAANYVAM 37 (126)
Q Consensus 7 ~~~g~~~~i~~~G~G~~~~~gd~V~v~y~~~ 37 (126)
.-+|++++|+.+|. +..||.+++-+...
T Consensus 137 G~~G~y~RVL~~G~---v~~gD~l~l~~r~~ 164 (210)
T COG2258 137 GRTGWYARVLEEGK---VRAGDPLKLIPRPS 164 (210)
T ss_pred CcccEEEEEcccce---ecCCCceEEecCCC
Confidence 34689999999998 88999998887765
No 29
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=53.70 E-value=25 Score=19.71 Aligned_cols=23 Identities=13% Similarity=0.414 Sum_probs=17.8
Q ss_pred hhHHHHhcCCCcCcEEEEEEcCC
Q 033143 65 KGLDEGILTMKTGGKRRLYIPGP 87 (126)
Q Consensus 65 ~gl~~~l~~m~~G~~~~v~ip~~ 87 (126)
+-+..|+.-|..||++.++.-+.
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 45888999999999999988663
No 30
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=49.57 E-value=66 Score=23.23 Aligned_cols=51 Identities=29% Similarity=0.300 Sum_probs=36.1
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCC------c----chhHHHHhcCCCcCcEE
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ------V----VKGLDEGILTMKTGGKR 80 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~------~----~~gl~~~l~~m~~G~~~ 80 (126)
.+++||.|.++..... ||-.-|+. .+|.+|... + ..+|..++..+++|-+.
T Consensus 86 vlk~GDiv~IDvg~~~-dG~~~Dsa------~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l 146 (255)
T COG0024 86 VLKEGDIVKIDVGAHI-DGYIGDTA------ITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARL 146 (255)
T ss_pred ccCCCCEEEEEEEEEE-CCeeeeEE------EEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 3889999999999988 77766664 567777321 2 24566677777777664
No 31
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=48.30 E-value=41 Score=17.64 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=26.4
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCC
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG 61 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~ 61 (126)
.++.|+.+.+.-+.++.+|..+... +|.+..+.+
T Consensus 8 kaK~Ge~I~ltVt~kda~G~pv~n~-----~f~l~r~~~ 41 (47)
T PF05688_consen 8 KAKVGETIPLTVTVKDANGNPVPNA-----PFTLTRGDA 41 (47)
T ss_pred heecCCeEEEEEEEECCCCCCcCCc-----eEEEEecCc
Confidence 4789999999999999888776654 677766643
No 32
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=46.79 E-value=36 Score=18.49 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=11.9
Q ss_pred CCCceEEEEEEEeecCC
Q 033143 105 PNSPVIFDVSLEYIPGL 121 (126)
Q Consensus 105 ~~~~l~~~i~l~~~~~~ 121 (126)
|++.+.|+.+++++...
T Consensus 17 P~s~lYYe~kV~~~d~~ 33 (55)
T PF09465_consen 17 PGSSLYYEGKVLSYDSK 33 (55)
T ss_dssp TTTS-EEEEEEEEEETT
T ss_pred CCCCcEEEEEEEEeccc
Confidence 56667799999986654
No 33
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=44.26 E-value=63 Score=23.50 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=34.7
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCC------cchhHHHHhcCCCcCcEEE
Q 033143 22 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ------VVKGLDEGILTMKTGGKRR 81 (126)
Q Consensus 22 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~------~~~gl~~~l~~m~~G~~~~ 81 (126)
..+++||.|.++.-... ||-..|.+ .++.+|... ...+++.++..|++|-+..
T Consensus 69 ~~l~~GDvV~iD~G~~~-dGY~sD~a------rT~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~~~ 127 (291)
T cd01088 69 TVLKEGDVVKLDFGAHV-DGYIADSA------FTVDFDPKYDDLLEAAKEALNAAIKEAGPDVRLG 127 (291)
T ss_pred cccCCCCEEEEEEEEEE-CCEEEEEE------EEEecChhHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 44899999999987766 77555554 345555321 2456666777777776643
No 34
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=43.55 E-value=74 Score=23.21 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=34.1
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCC--C----cchhHHHHhcCCCcCcEE
Q 033143 22 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG--Q----VVKGLDEGILTMKTGGKR 80 (126)
Q Consensus 22 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~--~----~~~gl~~~l~~m~~G~~~ 80 (126)
..+++||.|.+++-+.. ||-..|.+ .++.+|.. + ...+++.++..+++|-+.
T Consensus 73 ~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~A~~aai~~~kPGv~~ 130 (295)
T TIGR00501 73 TVFKDGDVVKLDLGAHV-DGYIADTA------ITVDLGDQYDNLVKAAKDALYTAIKEIRAGVRV 130 (295)
T ss_pred ccCCCCCEEEEEEeEEE-CCEEEEEE------EEEEeCcHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 34889999999987766 77655554 35566643 2 234566667777777654
No 35
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=43.24 E-value=1.4e+02 Score=25.77 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.5
Q ss_pred CcchhHHHHhcCCCcCcEEEEEEcC
Q 033143 62 QVVKGLDEGILTMKTGGKRRLYIPG 86 (126)
Q Consensus 62 ~~~~gl~~~l~~m~~G~~~~v~ip~ 86 (126)
+....+..||.|.++||.+.+.+|.
T Consensus 866 S~~SPLGkALLGkkvGD~V~v~~P~ 890 (906)
T PRK14720 866 SYQSPLGKSLLGKKEGDSLEFVIND 890 (906)
T ss_pred CCCCHHHHHHcCCCCCCEEEEEECC
Confidence 3456799999999999999998875
No 36
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=42.28 E-value=58 Score=22.51 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCCcchhHHHHhcCCCcCcEEEEEEcCCCCC
Q 033143 60 SGQVVKGLDEGILTMKTGGKRRLYIPGPLAF 90 (126)
Q Consensus 60 ~~~~~~gl~~~l~~m~~G~~~~v~ip~~~ay 90 (126)
.+++.+.|.+++..|++|+.. . +.+..+|
T Consensus 189 ~~~l~~~~~~a~~~l~~G~is-~-v~s~~G~ 217 (232)
T TIGR02925 189 AEQLPAEILAVLAKLKPGAPL-V-VQGPNNV 217 (232)
T ss_pred hhhCCHHHHHHHHhCCCCCeE-E-eecCCce
Confidence 357889999999999999985 3 5444333
No 37
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=41.08 E-value=97 Score=21.54 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=32.9
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCC---------cchhHHHHhcCCCcCcEEE
Q 033143 22 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VVKGLDEGILTMKTGGKRR 81 (126)
Q Consensus 22 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~gl~~~l~~m~~G~~~~ 81 (126)
..+++||.|.+++.... +|-..|.+ .+|.+|+.. +..+++.++..+|+|-++.
T Consensus 75 r~l~~GD~v~~d~g~~~-~GY~ad~~------RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~~ 136 (228)
T cd01090 75 RKVQRGDILSLNCFPMI-AGYYTALE------RTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARCK 136 (228)
T ss_pred cccCCCCEEEEEEeEEE-CCEeeeeE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 34789999999988765 56444433 355565322 2345556666777776643
No 38
>PRK12450 foldase protein PrsA; Reviewed
Probab=40.99 E-value=54 Score=24.13 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=27.1
Q ss_pred EEeCCCCcchhHHHHhcCCCcCcEEEEEE---cCCCCCC
Q 033143 56 FRVGSGQVVKGLDEGILTMKTGGKRRLYI---PGPLAFP 91 (126)
Q Consensus 56 ~~~g~~~~~~gl~~~l~~m~~G~~~~v~i---p~~~ayg 91 (126)
|.-+..++.+.|++++..|++|+...++- |-...||
T Consensus 195 f~~~~~~l~~ef~~aa~~Lk~GevS~~i~~~~pv~t~~G 233 (309)
T PRK12450 195 FDSGETTLPAEVVRAASGLKEGNRSEIITALDPATSKRT 233 (309)
T ss_pred ccCCCCCCCHHHHHHHHcCCCCCccccccCCCccccCCc
Confidence 43345579999999999999999876552 6566665
No 39
>PRK08671 methionine aminopeptidase; Provisional
Probab=40.54 E-value=86 Score=22.78 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=33.3
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCC--C----cchhHHHHhcCCCcCcEE
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG--Q----VVKGLDEGILTMKTGGKR 80 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~--~----~~~gl~~~l~~m~~G~~~ 80 (126)
.+++||.|.+++-... ||-..|.+ .++.+|.. + ...+++.++..+++|-+.
T Consensus 71 ~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~a~~aai~~ikpG~~~ 127 (291)
T PRK08671 71 VFPEGDVVKLDLGAHV-DGYIADTA------VTVDLGGKYEDLVEASEEALEAAIEVVRPGVSV 127 (291)
T ss_pred ccCCCCEEEEEEeEEE-CCEEEEEE------EEEEeChhHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4789999999987765 77665554 34556632 1 235566677777777553
No 40
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=40.11 E-value=1.2e+02 Score=20.89 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCC-------c-------chhHHHHhcCCCcCcEEE
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ-------V-------VKGLDEGILTMKTGGKRR 81 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~-------~-------~~gl~~~l~~m~~G~~~~ 81 (126)
.+++||.|.+++-+.. +|-.-|.+ .+|.+|... . ..+.+.++..+++|-+..
T Consensus 82 ~l~~Gd~v~iD~g~~~-~GY~sD~t------RT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~~ 147 (228)
T cd01089 82 TLKDGDVVKIDLGCHI-DGYIAVVA------HTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNS 147 (228)
T ss_pred ccCCCCEEEEEEEEEE-CCEEEEEE------EEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 4789999999988776 66544444 345555421 1 244566777888886643
No 41
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=39.12 E-value=1.1e+02 Score=20.06 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.7
Q ss_pred CcchhHHHHhcCCCcCcEEEEEEc
Q 033143 62 QVVKGLDEGILTMKTGGKRRLYIP 85 (126)
Q Consensus 62 ~~~~gl~~~l~~m~~G~~~~v~ip 85 (126)
+....+..||.|.++||.+.+..|
T Consensus 114 S~~SPig~aLlGk~vGd~v~v~~p 137 (151)
T COG0782 114 SVDSPLGRALLGKKVGDTVEVNTP 137 (151)
T ss_pred eccCHHHHHHhCCCCCCEEEEecC
Confidence 455678999999999999999777
No 42
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=38.81 E-value=59 Score=25.68 Aligned_cols=50 Identities=10% Similarity=0.160 Sum_probs=33.7
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCC--C----cchhHHHHhcCCCcCcE
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG--Q----VVKGLDEGILTMKTGGK 79 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~--~----~~~gl~~~l~~m~~G~~ 79 (126)
.++.||.|.|++-... +|-..|.+ .++.+|.. . +..+++.|+..+++|-+
T Consensus 233 vLk~GDvVkID~G~~v-dGYiaD~A------rTv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~ 288 (470)
T PTZ00053 233 VLTYDDVCKLDFGTHV-NGRIIDCA------FTVAFNPKYDPLLQATKDATNTGIKEAGIDVR 288 (470)
T ss_pred EecCCCeEEEEEeEEE-CCEEEeEE------EEEEeCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4889999999999887 78877775 34445532 1 23455666666666655
No 43
>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=37.92 E-value=81 Score=20.23 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=19.2
Q ss_pred CCCcEEEEEEcCCCCCCCCCCEEEEE
Q 033143 8 ESGLQYKDIKVGQGPSPPVGFQVAAN 33 (126)
Q Consensus 8 ~~g~~~~i~~~G~G~~~~~gd~V~v~ 33 (126)
.+|....-..+|+|.-++++|.|.|.
T Consensus 64 ~NG~~VtAyiPg~Gh~lqEH~~Vli~ 89 (129)
T COG0048 64 INGKEVTAYIPGEGHNLQEHSEVLIR 89 (129)
T ss_pred eCCcEEEEEcCCCCccccccCEEEEe
Confidence 37777777777877777788877765
No 44
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=37.17 E-value=77 Score=21.09 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=18.0
Q ss_pred CcchhHHHHhcCCCcCcEEEE
Q 033143 62 QVVKGLDEGILTMKTGGKRRL 82 (126)
Q Consensus 62 ~~~~gl~~~l~~m~~G~~~~v 82 (126)
.+...+..||.|.++||.+.+
T Consensus 129 S~~SPlG~ALlGk~vGD~V~v 149 (160)
T PRK06342 129 SYVSPVARALMGKAVGDVVSV 149 (160)
T ss_pred cccCHHHHHHcCCCCCCEEEE
Confidence 345679999999999999987
No 45
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=35.66 E-value=92 Score=18.09 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=42.0
Q ss_pred EcCCCcEEEEEEcC--CC-CCCCCCCEEEEEEEEEcCCCCEEeccc------CCCccEEEEeCCCCcchh-HHHHhcCCC
Q 033143 6 TTESGLQYKDIKVG--QG-PSPPVGFQVAANYVAMIPSGQIFDSSL------EKGRPYIFRVGSGQVVKG-LDEGILTMK 75 (126)
Q Consensus 6 ~~~~g~~~~i~~~G--~G-~~~~~gd~V~v~y~~~~~~g~~~~st~------~~~~~~~~~~g~~~~~~g-l~~~l~~m~ 75 (126)
.....+..-.++.- .. ....+|+.|.++.. .+|..+...| .....+.|.+- ....| +...|..|+
T Consensus 9 ~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~---~~~~~~~R~yS~~s~~~~~~~~~~~ik--~~~~G~~S~~L~~l~ 83 (99)
T PF00970_consen 9 ELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVP---INGKQVSRPYSPASSPDDKGYLEFAIK--RYPNGRVSRYLHQLK 83 (99)
T ss_dssp EESSSEEEEEEEESSTTTT-SSTTT-EEEEEEE---ETTEEEEEEEEBCSSTTSSSEEEEEEE--ECTTSHHHHHHHTSC
T ss_pred EeCCCeEEEEEEECCCCcccccCcceEEEEEEc---cCCcceecceeEeeecCCCCcEEEEEE--eccCCHHHHHHHhCC
Confidence 33444444444332 22 23789999999988 2344222222 11224566552 22233 666788899
Q ss_pred cCcEEEEEEcC
Q 033143 76 TGGKRRLYIPG 86 (126)
Q Consensus 76 ~G~~~~v~ip~ 86 (126)
+|+++.+.-|.
T Consensus 84 ~Gd~v~i~gP~ 94 (99)
T PF00970_consen 84 PGDEVEIRGPY 94 (99)
T ss_dssp TTSEEEEEEEE
T ss_pred CCCEEEEEEcc
Confidence 99999997765
No 46
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=33.65 E-value=64 Score=18.64 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.6
Q ss_pred HHHHhcCCCcCcEEEEEEcCCCCC
Q 033143 67 LDEGILTMKTGGKRRLYIPGPLAF 90 (126)
Q Consensus 67 l~~~l~~m~~G~~~~v~ip~~~ay 90 (126)
..++|..|+.|+...|++....+.
T Consensus 22 ~kk~l~~m~~Ge~LeV~~ddp~~~ 45 (78)
T COG0425 22 TKKALAKLKPGEILEVIADDPAAK 45 (78)
T ss_pred HHHHHHcCCCCCEEEEEecCcchH
Confidence 678999999999999999776555
No 47
>PRK00809 hypothetical protein; Provisional
Probab=33.39 E-value=75 Score=20.75 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=19.5
Q ss_pred cchhHHHHhcCCCcCcEEEEEEcCC
Q 033143 63 VVKGLDEGILTMKTGGKRRLYIPGP 87 (126)
Q Consensus 63 ~~~gl~~~l~~m~~G~~~~v~ip~~ 87 (126)
+..+=...|..|++||++.++.+..
T Consensus 24 ~~~~~rn~lr~Mk~GD~v~fYhs~~ 48 (144)
T PRK00809 24 VPERYKNTIEKVKPGDKLIIYVSQE 48 (144)
T ss_pred cchhhhhHHhhCCCCCEEEEEECCc
Confidence 3445556677899999999999875
No 48
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=33.28 E-value=1.1e+02 Score=23.35 Aligned_cols=52 Identities=21% Similarity=0.171 Sum_probs=35.2
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCC----------Cc----chhHHHHhcCCCcCcEEE
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG----------QV----VKGLDEGILTMKTGGKRR 81 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~----------~~----~~gl~~~l~~m~~G~~~~ 81 (126)
.++.||.|.|++-+.. ||-.-|.+ .+|.+|.. ++ ..+++.++..|++|-+..
T Consensus 100 ~Lk~GDvVkIDlG~~i-dGY~aD~a------rTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~~ 165 (389)
T TIGR00495 100 ILKEGDVVKIDLGCHI-DGFIALVA------HTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNT 165 (389)
T ss_pred CcCCCCEEEEEEEEEE-CCEEEEEE------EEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 4889999999998887 77666654 45666631 11 245567778888887644
No 49
>PRK02268 hypothetical protein; Provisional
Probab=32.94 E-value=31 Score=22.58 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=20.2
Q ss_pred cchhHHHHhcCCCcCcEEEEEEcCCC
Q 033143 63 VVKGLDEGILTMKTGGKRRLYIPGPL 88 (126)
Q Consensus 63 ~~~gl~~~l~~m~~G~~~~v~ip~~~ 88 (126)
+..|=...|..|++||++.++.|-..
T Consensus 25 v~hgK~apl~RmkpGD~ivyYsp~~~ 50 (141)
T PRK02268 25 VCHGKAAPLRRMKPGDWIIYYSPKTT 50 (141)
T ss_pred eCCCccchhhcCCCCCEEEEEeceEe
Confidence 44455667889999999999997654
No 50
>PRK12897 methionine aminopeptidase; Reviewed
Probab=32.36 E-value=1.8e+02 Score=20.40 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=34.2
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCC---------cchhHHHHhcCCCcCcEEE
Q 033143 22 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VVKGLDEGILTMKTGGKRR 81 (126)
Q Consensus 22 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~gl~~~l~~m~~G~~~~ 81 (126)
..+++||.|.+.+-... +|-..|.+ .+|.+|... +..+++.++..+++|-+..
T Consensus 83 ~~l~~Gd~V~iD~g~~~-~GY~sD~t------RT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~~ 144 (248)
T PRK12897 83 VPLTEGDIVTIDMVVNL-NGGLSDSA------WTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRVG 144 (248)
T ss_pred cccCCCCEEEEEeeEEE-CCEEEEEE------EEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 45889999999988766 56555544 355666431 1345666777778875543
No 51
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=31.11 E-value=88 Score=18.34 Aligned_cols=40 Identities=25% Similarity=0.493 Sum_probs=28.6
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccC-CCccEEEEeCCCC
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLE-KGRPYIFRVGSGQ 62 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~-~~~~~~~~~g~~~ 62 (126)
++-.-|.++++=.+...+|.++.+.++ +++.+++.+|.+.
T Consensus 12 a~Ya~e~~~l~~~GV~~ngrlV~T~F~fDG~~l~~~~G~~~ 52 (79)
T PF11012_consen 12 APYAAEEFTLNESGVFRNGRLVATSFEFDGKTLEYRTGSGT 52 (79)
T ss_pred CCccccEEEECCCcEEECCCEEeeEEEECCCEEEEEECCeE
Confidence 355667777777777778888888764 5667888887653
No 52
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=30.61 E-value=74 Score=17.62 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=19.8
Q ss_pred HHHHhcCCCcCcEEEEEEcCCCCC
Q 033143 67 LDEGILTMKTGGKRRLYIPGPLAF 90 (126)
Q Consensus 67 l~~~l~~m~~G~~~~v~ip~~~ay 90 (126)
..++|..|+.|+...+++.-..+.
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~a~ 39 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDPGFA 39 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCccHH
Confidence 678999999999999998765443
No 53
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=30.35 E-value=1e+02 Score=17.10 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=23.1
Q ss_pred eEcCCCcEEEEEEcCCCCCCCCCCEEEEEEEEEc
Q 033143 5 VTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMI 38 (126)
Q Consensus 5 ~~~~~g~~~~i~~~G~G~~~~~gd~V~v~y~~~~ 38 (126)
.++++|=.|+.-.+=+=+.+++|..|.|.|....
T Consensus 19 itLdDGksy~lp~ef~~~~L~~G~kV~V~yd~~~ 52 (61)
T PF07076_consen 19 ITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDEVD 52 (61)
T ss_pred EEecCCCEEECCCcccccccCCCCEEEEEEEccC
Confidence 3456666666554444455889999999998765
No 54
>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]
Probab=29.47 E-value=50 Score=20.47 Aligned_cols=28 Identities=14% Similarity=0.282 Sum_probs=20.4
Q ss_pred CeeEcCCCcEEEEEEcCCCCC---CCCCCEE
Q 033143 3 PMVTTESGLQYKDIKVGQGPS---PPVGFQV 30 (126)
Q Consensus 3 ~~~~~~~g~~~~i~~~G~G~~---~~~gd~V 30 (126)
++..+++|+|..-+.+|+-.. ...+|.+
T Consensus 53 Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKI 83 (124)
T KOG3553|consen 53 PFSYTDKGIYVTRVSEGSPAEIAGLRIHDKI 83 (124)
T ss_pred CCCcCCccEEEEEeccCChhhhhcceecceE
Confidence 466789999999999987533 4456655
No 55
>PF02149 KA1: Kinase associated domain 1; InterPro: IPR001772 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. Members of the KIN2/PAR-1/MARK kinase subfamily are conserved from yeast to human and share the same domain organisation: an N-terminal kinase domain (IPR000719 from INTERPRO) and a C-terminal kinase associated domain 1 (KA1). Some members of the KIN1/PAR-1/MARK family also contain an UBA domain (IPR000449 from INTERPRO). Members of this kinase subfamily are involved in various biological processes such as cell polarity, cell cycle control, intracellular signalling, microtubule stability and protein stability []. The function of the KA1 domain is not yet known. Some proteins known to contain a KA1 domain are listed below: Mammalian MAP/microtubule affinity-regulating kinases (MARK 1,2,3). They regulate polarity in neuronal cell models and appear to function redundantly in phosphorylating MT-associated proteins and in regulating MT stability []. Mammalian maternal embryonic leucine zipper kinase (MELK). It phosphorylates ZNF622 and may contribute to its redirection to the nucleus. It may be involved in the inhibition of spliceosome assembly during mitosis. Caenorhabditis elegans and drosophila PAR-1 protein. It is required for establishing polarity in embryos where it is asymmetrically distributed []. Fungal Kin1 and Kin2 protein kinases involved in regulation of exocytosis. They localise to the cytoplasmic face of the plasma membrane []. Plant KIN10 and KIN11 proteins, catalytic subunits of the putative trimeric SNF1-related protein kinase (SnRK) complex. This entry represents the KA1 domain.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3OSE_A 1V5S_A 1UL7_A.
Probab=28.76 E-value=94 Score=16.07 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=11.7
Q ss_pred CCceEEEEEEEeecC
Q 033143 106 NSPVIFDVSLEYIPG 120 (126)
Q Consensus 106 ~~~l~~~i~l~~~~~ 120 (126)
++.+.|+++|.++..
T Consensus 2 ~~~v~fEieV~kl~~ 16 (47)
T PF02149_consen 2 KEVVKFEIEVCKLPR 16 (47)
T ss_dssp CC-EEEEEEEEEECC
T ss_pred CcceEEEEEEEEecC
Confidence 467899999999875
No 56
>PRK12426 elongation factor P; Provisional
Probab=28.48 E-value=2e+02 Score=19.76 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=30.0
Q ss_pred EEEEEEEcC-CCCEEecccCCC----------ccEEEEeCCCC------------c-c--hhHHHHhcCCCcCcEEEEEE
Q 033143 31 AANYVAMIP-SGQIFDSSLEKG----------RPYIFRVGSGQ------------V-V--KGLDEGILTMKTGGKRRLYI 84 (126)
Q Consensus 31 ~v~y~~~~~-~g~~~~st~~~~----------~~~~~~~g~~~------------~-~--~gl~~~l~~m~~G~~~~v~i 84 (126)
.++.+++.. +|.+++.++..+ .++.|...++. + + .-+..+..=|++|..+.+..
T Consensus 36 ~vr~klknl~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~dg~~~~FMd~etyeQi~i~~~~lgd~~~fL~e~~~v~v~~ 115 (185)
T PRK12426 36 FIKVSLQAADSDVVVERNFKAGQEVKEAQFEPRNLEYLYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFLKAGVTVSALV 115 (185)
T ss_pred EEEEEEEEcCCCCeEEEEECCCCeEEEeEEEeeEeEEEEECCCeEEEecCCCceEEEeCHHHhhhHHhhccCCCEEEEEE
Confidence 455556654 788888776532 23333332221 1 1 23555677788888877654
No 57
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.47 E-value=83 Score=17.44 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=18.7
Q ss_pred HHHHhcCCCcCcEEEEEEcCCCC
Q 033143 67 LDEGILTMKTGGKRRLYIPGPLA 89 (126)
Q Consensus 67 l~~~l~~m~~G~~~~v~ip~~~a 89 (126)
..++|..|..|+...+++.-..+
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~s 38 (69)
T cd03422 16 TLEALPSLKPGEILEVISDCPQS 38 (69)
T ss_pred HHHHHHcCCCCCEEEEEecCchH
Confidence 56799999999999998865443
No 58
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=27.11 E-value=79 Score=18.54 Aligned_cols=26 Identities=15% Similarity=0.420 Sum_probs=22.1
Q ss_pred eCCCCcchhHHHHhcCCCcCcEEEEE
Q 033143 58 VGSGQVVKGLDEGILTMKTGGKRRLY 83 (126)
Q Consensus 58 ~g~~~~~~gl~~~l~~m~~G~~~~v~ 83 (126)
+..+++.+.|..++..|++|+....+
T Consensus 57 ~~~~~l~~~~~~~~~~l~~Gevs~pi 82 (95)
T PF00639_consen 57 ISRGQLPPEFEKALFALKPGEVSKPI 82 (95)
T ss_dssp EETTSSBHHHHHHHHTSTTTSBEEEE
T ss_pred ccCCcccHHHHHHHHhCCCCCcCCCE
Confidence 34468999999999999999998665
No 59
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=25.87 E-value=1.4e+02 Score=17.28 Aligned_cols=14 Identities=14% Similarity=0.021 Sum_probs=6.2
Q ss_pred CCCcCcEEEEEEcC
Q 033143 73 TMKTGGKRRLYIPG 86 (126)
Q Consensus 73 ~m~~G~~~~v~ip~ 86 (126)
.+.+|+...+....
T Consensus 55 ~l~pGe~~~~~~~~ 68 (82)
T PF12690_consen 55 TLEPGESLTYEETW 68 (82)
T ss_dssp EE-TT-EEEEEEEE
T ss_pred EECCCCEEEEEEEE
Confidence 44566666554433
No 60
>PLN03158 methionine aminopeptidase; Provisional
Probab=25.81 E-value=2.5e+02 Score=21.65 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=34.0
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCC---------cchhHHHHhcCCCcCcE
Q 033143 22 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VVKGLDEGILTMKTGGK 79 (126)
Q Consensus 22 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~gl~~~l~~m~~G~~ 79 (126)
..+++||.|.++..++. +|-.-|.+ .+|.+|.-. ...+++.++..+++|-.
T Consensus 216 r~L~~GDiV~iDvg~~~-~GY~aD~t------RT~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv~ 275 (396)
T PLN03158 216 RKLEDGDIVNVDVTVYY-KGCHGDLN------ETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVR 275 (396)
T ss_pred ccCCCCCEEEEEEeEEE-CCEEEeEE------eEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 44899999999999887 66444443 345566421 34667777777788754
No 61
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.53 E-value=1.7e+02 Score=18.61 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=24.8
Q ss_pred CCCCCEEEEEEEEEcCC-CCEEecccCCCccEEEEeCCCCcchhHHHHh
Q 033143 24 PPVGFQVAANYVAMIPS-GQIFDSSLEKGRPYIFRVGSGQVVKGLDEGI 71 (126)
Q Consensus 24 ~~~gd~V~v~y~~~~~~-g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l 71 (126)
+..||.|++||.-+... |+.-..+. -.|++.++....-|+-+.
T Consensus 71 iadGdLV~vh~hqt~~~pg~~~~v~~-----DtfR~ddgkivEHWDviq 114 (129)
T COG4922 71 IADGDLVTVHYHQTVSEPGSYTTVTF-----DTFRIDDGKIVEHWDVIQ 114 (129)
T ss_pred eccCCEEEEEEeeeeCCCCcceeEEE-----EEEEeeCCceeeccchhh
Confidence 67899999999988753 43322221 134555454444454443
No 62
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=25.32 E-value=1.9e+02 Score=20.08 Aligned_cols=51 Identities=22% Similarity=0.159 Sum_probs=32.8
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCC---------cchhHHHHhcCCCcCcE
Q 033143 22 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VVKGLDEGILTMKTGGK 79 (126)
Q Consensus 22 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~gl~~~l~~m~~G~~ 79 (126)
..+++||.|.+.+-... +|-.-|.+ .+|.+|... +..+++.++..+++|-+
T Consensus 82 ~~l~~Gd~v~iD~g~~~-~gY~aD~~------RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~ 141 (247)
T TIGR00500 82 KVLKDGDIVNIDVGVIY-DGYHGDTA------KTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNR 141 (247)
T ss_pred cccCCCCEEEEEEEEEE-CCEEEEEE------EEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44889999999988876 56544443 345565411 23456667777777754
No 63
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=24.42 E-value=1e+02 Score=17.74 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=19.9
Q ss_pred HHHHhcCCCcCcEEEEEEcCCCCC
Q 033143 67 LDEGILTMKTGGKRRLYIPGPLAF 90 (126)
Q Consensus 67 l~~~l~~m~~G~~~~v~ip~~~ay 90 (126)
+.++|..|+.|+...+++.-..+.
T Consensus 26 ~kk~l~~l~~G~~l~V~~dd~~~~ 49 (81)
T PRK00299 26 VRKTVRNMQPGETLLIIADDPATT 49 (81)
T ss_pred HHHHHHcCCCCCEEEEEeCCccHH
Confidence 888999999999999988754443
No 64
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=24.05 E-value=65 Score=20.54 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=12.8
Q ss_pred HhcCCCcCcEEEEEEcC
Q 033143 70 GILTMKTGGKRRLYIPG 86 (126)
Q Consensus 70 ~l~~m~~G~~~~v~ip~ 86 (126)
.+..|++||++.++.+.
T Consensus 36 ~l~~mk~GD~vifY~s~ 52 (143)
T PF01878_consen 36 NLKRMKPGDKVIFYHSG 52 (143)
T ss_dssp HHHC--TT-EEEEEETS
T ss_pred hhhcCCCCCEEEEEEcC
Confidence 77899999999999988
No 65
>PRK12896 methionine aminopeptidase; Reviewed
Probab=23.90 E-value=2.6e+02 Score=19.47 Aligned_cols=51 Identities=25% Similarity=0.227 Sum_probs=31.4
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCC---------cchhHHHHhcCCCcCcE
Q 033143 22 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VVKGLDEGILTMKTGGK 79 (126)
Q Consensus 22 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~gl~~~l~~m~~G~~ 79 (126)
..++.||.|.+++-... +|-.-|.+ .+|.+|... +..+++.++..|++|-.
T Consensus 89 ~~l~~Gd~v~iD~g~~~-~gY~aD~~------RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~ 148 (255)
T PRK12896 89 RVIKDGDLVNIDVSAYL-DGYHGDTG------ITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRP 148 (255)
T ss_pred ccCCCCCEEEEEEeEEE-CcEEEeeE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44789999999988765 55433333 345565421 23456666677777643
No 66
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=23.83 E-value=1.1e+02 Score=19.14 Aligned_cols=25 Identities=16% Similarity=-0.104 Sum_probs=19.2
Q ss_pred EEEEcCCCCCCCCCCEEEEEEEEEc
Q 033143 14 KDIKVGQGPSPPVGFQVAANYVAMI 38 (126)
Q Consensus 14 ~i~~~G~G~~~~~gd~V~v~y~~~~ 38 (126)
.+++..+|...+.||.|++-=.++.
T Consensus 41 ~~~kDsnG~~L~dGDsV~liKDLkV 65 (109)
T TIGR00686 41 LIVKDCNGNLLANGDSVILIKDLKV 65 (109)
T ss_pred ceEEcCCCCCccCCCEEEEEeeccc
Confidence 3567788999999999988655554
No 67
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=23.20 E-value=1.2e+02 Score=19.78 Aligned_cols=20 Identities=10% Similarity=0.298 Sum_probs=17.4
Q ss_pred EEEEEEEEEcCCCCEEeccc
Q 033143 29 QVAANYVAMIPSGQIFDSSL 48 (126)
Q Consensus 29 ~V~v~y~~~~~~g~~~~st~ 48 (126)
.+.++|+++..+|.++.+..
T Consensus 87 RI~l~Y~L~d~~G~vi~~g~ 106 (141)
T PF11454_consen 87 RIELSYTLTDADGKVIKQGE 106 (141)
T ss_pred cEEEEEEEECCCCcEEEecc
Confidence 48999999998999999863
No 68
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.48 E-value=1.4e+02 Score=16.43 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=19.0
Q ss_pred HHHHhcCCCcCcEEEEEEcCCCC
Q 033143 67 LDEGILTMKTGGKRRLYIPGPLA 89 (126)
Q Consensus 67 l~~~l~~m~~G~~~~v~ip~~~a 89 (126)
...+|..|..|+...+++.-..+
T Consensus 16 ~k~~l~~l~~G~~l~V~~dd~~s 38 (69)
T cd03423 16 LHKKVRKMKPGDTLLVLATDPST 38 (69)
T ss_pred HHHHHHcCCCCCEEEEEeCCCch
Confidence 67899999999999998875443
No 69
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=21.86 E-value=1.1e+02 Score=16.65 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=18.6
Q ss_pred HHHHhcCCCcCcEEEEEEcCCCCC
Q 033143 67 LDEGILTMKTGGKRRLYIPGPLAF 90 (126)
Q Consensus 67 l~~~l~~m~~G~~~~v~ip~~~ay 90 (126)
+..+|..|..|+...+++....+.
T Consensus 17 ~~~~l~~l~~G~~l~v~~d~~~~~ 40 (70)
T PF01206_consen 17 AKKALKELPPGEVLEVLVDDPAAV 40 (70)
T ss_dssp HHHHHHTSGTT-EEEEEESSTTHH
T ss_pred HHHHHHhcCCCCEEEEEECCccHH
Confidence 567899999999999998765543
No 70
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.32 E-value=2e+02 Score=17.17 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=27.7
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchh
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKG 66 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g 66 (126)
.++.||.|.++|--...-|+++.-+.. -+.+.+. .++++|
T Consensus 20 eV~~gd~vel~~grVhIpG~vv~~n~g---~l~l~~e-sdmi~G 59 (91)
T COG4013 20 EVDVGDYVELYFGRVHIPGRVVHYNDG---LLRLVHE-SDMIYG 59 (91)
T ss_pred cCCCCCEEEEEEEEEEeccEEEEeecc---EEEEEEe-ccccCc
Confidence 478999999999887778888877622 3444443 345555
No 71
>PRK12318 methionine aminopeptidase; Provisional
Probab=21.30 E-value=3.3e+02 Score=19.80 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=31.6
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCC---------cchhHHHHhcCCCcCcE
Q 033143 22 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VVKGLDEGILTMKTGGK 79 (126)
Q Consensus 22 ~~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~gl~~~l~~m~~G~~ 79 (126)
..+++||.|.+.+-... +|-.-|.+ .+|.+|... +..+++.++..+++|-.
T Consensus 124 ~~l~~GD~V~vD~g~~~-~GY~aDit------RT~~vG~~~~~~~~~~~~~~~a~~~~i~~~rpG~~ 183 (291)
T PRK12318 124 IPLKNGDIMNIDVSCIV-DGYYGDCS------RMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIP 183 (291)
T ss_pred CccCCCCEEEEEEeEEE-CcEEEEEE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45889999999998776 66544443 345566421 23445556666666644
No 72
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=21.30 E-value=2.4e+02 Score=21.40 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=32.3
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCC---------cchhHHHHhcCCCcCcEEE
Q 033143 23 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VVKGLDEGILTMKTGGKRR 81 (126)
Q Consensus 23 ~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~gl~~~l~~m~~G~~~~ 81 (126)
.+++||.|.+.+.+.. +|-.-|. ..+|.+|... +..+.+.++..+++|-...
T Consensus 237 ~l~~gd~v~iD~g~~~-~GY~sD~------tRT~~vG~p~~~~~~~~~~~~~a~~~~i~~ikpG~~~~ 297 (391)
T TIGR02993 237 PMKVGEGTFFEIAGCY-KRYHCPL------SRTVFLGKPTQAFLDAEKAVLEGMEAGLEAAKPGNTCE 297 (391)
T ss_pred cccCCCEEEEEeeeec-ccCccce------eEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 4788999999887665 4433333 2456666432 3455666777777776643
No 73
>PF03831 PhnA: PhnA protein; InterPro: IPR013988 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the C-terminal domain of PhnA.; PDB: 2AKK_A 2AKL_A.
Probab=21.25 E-value=42 Score=18.30 Aligned_cols=22 Identities=18% Similarity=-0.002 Sum_probs=12.1
Q ss_pred EcCCCCCCCCCCEEEEEEEEEc
Q 033143 17 KVGQGPSPPVGFQVAANYVAMI 38 (126)
Q Consensus 17 ~~G~G~~~~~gd~V~v~y~~~~ 38 (126)
+..+|...+.||.|++-=.+..
T Consensus 3 ~DsnGn~L~dGDsV~~iKDLkV 24 (56)
T PF03831_consen 3 KDSNGNELQDGDSVTLIKDLKV 24 (56)
T ss_dssp B-TTS-B--TTEEEEESS-EEE
T ss_pred EcCCCCCccCCCEEEEEeeeee
Confidence 4556778889999887555554
No 74
>PRK08051 fre FMN reductase; Validated
Probab=20.86 E-value=2.9e+02 Score=18.96 Aligned_cols=82 Identities=11% Similarity=-0.016 Sum_probs=41.8
Q ss_pred EcCCCcEEEEEEcCCCCCCCCCCEEEEEEEEEcCCCCEEe--cccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEEEE
Q 033143 6 TTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFD--SSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLY 83 (126)
Q Consensus 6 ~~~~g~~~~i~~~G~G~~~~~gd~V~v~y~~~~~~g~~~~--st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~v~ 83 (126)
.....++.-.++....-..++|+.|.+..... .-..+. +.......+.|.+.....-.--...+..+++|+++.+.
T Consensus 12 ~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~--~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~l~~G~~v~v~ 89 (232)
T PRK08051 12 AITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK--DKRPFSIASTPREKGFIELHIGASELNLYAMAVMERILKDGEIEVD 89 (232)
T ss_pred cCCCCeEEEEEecCCCCccCCCCEEEEEcCCC--cceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHHcCCCCEEEEE
Confidence 34455666566554444578999999886321 111111 11111234555443211000012345688999999987
Q ss_pred EcCCCC
Q 033143 84 IPGPLA 89 (126)
Q Consensus 84 ip~~~a 89 (126)
-|....
T Consensus 90 gP~G~~ 95 (232)
T PRK08051 90 IPHGDA 95 (232)
T ss_pred cCCCce
Confidence 775433
No 75
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=20.85 E-value=1.7e+02 Score=18.97 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=39.1
Q ss_pred CCCcEEEEEEcCCCC------CCCCCCEEEEEEEEEcCCCCEEecccCCCccEEEEeCCCCcchhHHHHhcCCCcCcEEE
Q 033143 8 ESGLQYKDIKVGQGP------SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRR 81 (126)
Q Consensus 8 ~~g~~~~i~~~G~G~------~~~~gd~V~v~y~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~gl~~~l~~m~~G~~~~ 81 (126)
..|..++.++.+++. .++.||.|+++++ +.++. +..|.+... ++ -..+..|++..
T Consensus 43 ~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vt--N~d~~----------~H~f~i~~~----gi---s~~I~pGet~T 103 (135)
T TIGR03096 43 VEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVE--NKSPI----------SEGFSIDAY----GI---SEVIKAGETKT 103 (135)
T ss_pred eCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEE--eCCCC----------ccceEECCC----Cc---ceEECCCCeEE
Confidence 788899999888762 2689999999986 32221 112333211 11 23456788888
Q ss_pred EEEcCCCC
Q 033143 82 LYIPGPLA 89 (126)
Q Consensus 82 v~ip~~~a 89 (126)
+.+++..+
T Consensus 104 itF~adKp 111 (135)
T TIGR03096 104 ISFKADKA 111 (135)
T ss_pred EEEECCCC
Confidence 87766544
No 76
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=20.55 E-value=1e+02 Score=17.26 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=13.9
Q ss_pred hhHHHHhc--CCCcCcEEEE
Q 033143 65 KGLDEGIL--TMKTGGKRRL 82 (126)
Q Consensus 65 ~gl~~~l~--~m~~G~~~~v 82 (126)
-|++++|. |.+.|+.+.+
T Consensus 43 ~Gv~~~L~~~G~~~GD~V~I 62 (69)
T TIGR03595 43 LGVEDALRKAGAKDGDTVRI 62 (69)
T ss_pred CCHHHHHHHcCCCCCCEEEE
Confidence 56888886 5589998876
Done!