Query 033144
Match_columns 126
No_of_seqs 151 out of 1067
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:21:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 1.1E-46 2.4E-51 263.0 12.2 120 2-123 6-126 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 2.5E-46 5.4E-51 256.9 10.6 119 1-121 1-119 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 6E-44 1.3E-48 239.8 10.0 113 2-116 5-117 (152)
4 PLN00172 ubiquitin conjugating 100.0 5.4E-43 1.2E-47 244.6 14.2 119 1-121 1-119 (147)
5 PTZ00390 ubiquitin-conjugating 100.0 1.9E-42 4.2E-47 243.0 14.1 119 2-122 3-121 (152)
6 KOG0421 Ubiquitin-protein liga 100.0 2E-40 4.3E-45 225.9 7.9 120 3-124 31-150 (175)
7 KOG0418 Ubiquitin-protein liga 100.0 1.8E-39 3.9E-44 229.7 10.2 119 2-122 4-126 (200)
8 KOG0425 Ubiquitin-protein liga 100.0 5.6E-38 1.2E-42 216.4 11.1 116 2-119 6-135 (171)
9 PF00179 UQ_con: Ubiquitin-con 100.0 5.2E-38 1.1E-42 217.3 10.8 110 5-116 1-112 (140)
10 KOG0424 Ubiquitin-protein liga 100.0 1.6E-37 3.5E-42 211.5 10.4 120 2-123 5-131 (158)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 5.7E-37 1.2E-41 212.4 12.7 114 4-119 2-116 (141)
12 KOG0426 Ubiquitin-protein liga 100.0 2E-37 4.4E-42 208.6 9.8 114 1-116 4-131 (165)
13 smart00212 UBCc Ubiquitin-conj 100.0 4.4E-35 9.4E-40 203.8 12.8 111 4-116 1-113 (145)
14 KOG0427 Ubiquitin conjugating 100.0 2.7E-34 6E-39 193.2 11.6 110 2-114 16-126 (161)
15 KOG0894 Ubiquitin-protein liga 100.0 2.8E-32 6.1E-37 196.8 11.3 120 2-125 6-129 (244)
16 KOG0422 Ubiquitin-protein liga 100.0 4.8E-32 1E-36 183.8 9.5 119 1-122 2-122 (153)
17 KOG0420 Ubiquitin-protein liga 100.0 3.5E-30 7.5E-35 180.2 7.6 111 2-117 29-143 (184)
18 KOG0416 Ubiquitin-protein liga 100.0 2.4E-29 5.3E-34 175.7 7.0 100 2-104 4-104 (189)
19 KOG0423 Ubiquitin-protein liga 99.9 1E-28 2.3E-33 173.2 4.4 109 3-113 12-120 (223)
20 KOG0428 Non-canonical ubiquiti 99.9 5.9E-25 1.3E-29 161.8 9.6 108 2-114 12-122 (314)
21 KOG0895 Ubiquitin-conjugating 99.8 7.7E-19 1.7E-23 149.4 7.0 108 4-113 854-970 (1101)
22 KOG0895 Ubiquitin-conjugating 99.7 9.2E-17 2E-21 136.9 10.6 111 3-115 284-405 (1101)
23 KOG0429 Ubiquitin-conjugating 99.6 4.4E-15 9.5E-20 108.2 10.0 112 4-118 22-137 (258)
24 KOG0896 Ubiquitin-conjugating 99.6 3.9E-15 8.5E-20 100.8 8.5 113 4-118 8-127 (138)
25 KOG0897 Predicted ubiquitin-co 98.7 1E-08 2.2E-13 68.0 3.2 61 50-112 13-75 (122)
26 PF08694 UFC1: Ubiquitin-fold 98.7 1.5E-08 3.3E-13 69.7 4.0 106 3-114 26-145 (161)
27 PF14461 Prok-E2_B: Prokaryoti 98.7 4.4E-08 9.6E-13 67.3 6.3 66 46-113 34-105 (133)
28 PF05743 UEV: UEV domain; Int 98.4 1.8E-06 3.9E-11 58.5 6.8 71 29-104 31-109 (121)
29 KOG3357 Uncharacterized conser 98.0 1.1E-05 2.5E-10 54.9 4.9 104 3-113 29-147 (167)
30 PF05773 RWD: RWD domain; Int 97.1 0.0022 4.7E-08 41.7 6.1 69 3-72 3-73 (113)
31 KOG2391 Vacuolar sorting prote 96.8 0.0099 2.1E-07 46.6 8.3 70 29-103 51-128 (365)
32 smart00591 RWD domain in RING 96.6 0.016 3.5E-07 37.2 7.3 27 46-72 39-65 (107)
33 PF14462 Prok-E2_E: Prokaryoti 96.5 0.054 1.2E-06 36.8 9.1 92 19-113 12-120 (122)
34 PF14457 Prok-E2_A: Prokaryoti 96.3 0.052 1.1E-06 38.5 8.5 61 51-113 56-125 (162)
35 PF09765 WD-3: WD-repeat regio 92.0 0.31 6.7E-06 37.7 4.6 85 4-113 102-187 (291)
36 KOG0309 Conserved WD40 repeat- 88.8 2.6 5.6E-05 37.0 7.7 68 4-72 423-491 (1081)
37 KOG4018 Uncharacterized conser 86.6 2 4.4E-05 31.8 5.2 61 7-70 8-71 (215)
38 cd00421 intradiol_dioxygenase 72.0 6.8 0.00015 27.0 3.7 24 47-70 65-89 (146)
39 cd03457 intradiol_dioxygenase_ 69.4 8 0.00017 28.0 3.8 26 46-71 85-110 (188)
40 smart00340 HALZ homeobox assoc 65.8 5.8 0.00012 21.9 1.8 14 3-16 21-34 (44)
41 cd03459 3,4-PCD Protocatechuat 63.1 13 0.00028 26.2 3.7 24 47-70 72-100 (158)
42 PF14460 Prok-E2_D: Prokaryoti 62.0 4 8.6E-05 29.1 1.0 14 76-89 98-111 (175)
43 TIGR03737 PRTRC_B PRTRC system 54.9 6.4 0.00014 29.5 1.1 14 76-89 139-152 (228)
44 KOG4445 Uncharacterized conser 54.6 17 0.00037 28.6 3.3 25 48-72 45-69 (368)
45 TIGR02423 protocat_alph protoc 53.3 22 0.00048 25.9 3.6 24 47-70 96-124 (193)
46 PF03366 YEATS: YEATS family; 52.8 55 0.0012 20.5 5.0 42 31-74 2-43 (84)
47 cd03463 3,4-PCD_alpha Protocat 51.0 26 0.00056 25.4 3.7 24 47-70 92-120 (185)
48 PF06113 BRE: Brain and reprod 50.8 72 0.0016 25.4 6.3 57 30-98 53-110 (333)
49 PF06113 BRE: Brain and reprod 46.8 29 0.00062 27.6 3.6 23 49-71 307-329 (333)
50 KOG1047 Bifunctional leukotrie 44.6 23 0.00049 30.2 2.8 29 43-72 248-279 (613)
51 PRK11700 hypothetical protein; 44.2 1.1E+02 0.0025 22.2 6.1 70 29-104 87-183 (187)
52 cd05845 Ig2_L1-CAM_like Second 43.6 67 0.0015 20.5 4.4 25 46-72 17-41 (95)
53 KOG0700 Protein phosphatase 2C 39.3 1.1E+02 0.0024 24.9 5.8 29 55-83 303-331 (390)
54 TIGR02439 catechol_proteo cate 38.4 49 0.0011 25.7 3.7 24 47-70 180-221 (285)
55 COG0544 Tig FKBP-type peptidyl 37.5 87 0.0019 25.8 5.2 14 50-63 211-224 (441)
56 KOG3285 Spindle assembly check 37.0 64 0.0014 23.5 3.8 40 3-42 121-160 (203)
57 cd03461 1,2-HQD Hydroxyquinol 36.9 54 0.0012 25.3 3.7 24 47-70 172-213 (277)
58 cd03464 3,4-PCD_beta Protocate 35.2 61 0.0013 24.1 3.6 24 47-70 122-152 (220)
59 PF12065 DUF3545: Protein of u 34.8 31 0.00068 20.4 1.6 13 3-15 36-48 (59)
60 cd03460 1,2-CTD Catechol 1,2 d 33.6 66 0.0014 24.9 3.7 24 47-70 176-217 (282)
61 PF00779 BTK: BTK motif; Inte 33.2 16 0.00035 18.8 0.2 15 73-87 2-17 (32)
62 TIGR02422 protocat_beta protoc 33.2 69 0.0015 23.9 3.6 24 47-70 117-147 (220)
63 PF04881 Adeno_GP19K: Adenovir 32.7 46 0.001 22.9 2.4 28 28-55 45-73 (139)
64 TIGR02438 catachol_actin catec 32.6 71 0.0015 24.8 3.7 24 47-70 184-225 (281)
65 KOG1814 Predicted E3 ubiquitin 32.4 45 0.00097 27.4 2.7 22 50-71 76-98 (445)
66 PF00845 Gemini_BL1: Geminivir 31.5 1.2E+02 0.0026 23.2 4.7 46 28-74 100-154 (276)
67 KOG0177 20S proteasome, regula 30.9 23 0.0005 25.9 0.8 24 81-104 135-158 (200)
68 TIGR02465 chlorocat_1_2 chloro 29.7 88 0.0019 23.7 3.7 25 46-70 149-191 (246)
69 PF11745 DUF3304: Protein of u 27.3 31 0.00068 22.8 0.9 20 81-100 50-69 (118)
70 PRK15486 hpaC 4-hydroxyphenyla 26.9 44 0.00096 23.7 1.7 69 6-91 6-77 (170)
71 cd03458 Catechol_intradiol_dio 25.8 1.1E+02 0.0024 23.3 3.7 24 47-70 156-197 (256)
72 TIGR02296 HpaC 4-hydroxyphenyl 25.7 41 0.00089 23.3 1.3 30 62-91 36-68 (154)
73 COG4957 Predicted transcriptio 23.5 41 0.00089 23.4 0.9 17 50-66 104-120 (148)
74 PF13950 Epimerase_Csub: UDP-g 23.5 94 0.002 18.1 2.4 20 91-112 36-55 (62)
75 PF14135 DUF4302: Domain of un 22.4 3.2E+02 0.0069 20.2 5.6 70 2-82 10-103 (235)
76 PF14455 Metal_CEHH: Predicted 22.1 3E+02 0.0065 19.6 6.4 65 4-72 8-76 (177)
77 cd03462 1,2-CCD chlorocatechol 21.6 1.5E+02 0.0032 22.5 3.7 25 46-70 150-192 (247)
78 COG2819 Predicted hydrolase of 21.1 1.7E+02 0.0037 22.5 3.9 30 42-71 15-46 (264)
79 PF00775 Dioxygenase_C: Dioxyg 20.5 72 0.0016 22.9 1.7 24 47-70 83-124 (183)
80 TIGR03615 RutF pyrimidine util 20.4 63 0.0014 22.4 1.4 66 8-90 4-72 (156)
81 PF08872 KGK: KGK domain; Int 20.3 2E+02 0.0044 19.1 3.7 24 33-56 67-92 (114)
82 PF05709 Sipho_tail: Phage tai 20.0 3.4E+02 0.0073 19.4 5.4 58 4-63 55-115 (249)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-46 Score=262.99 Aligned_cols=120 Identities=54% Similarity=1.091 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCC-CCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccC
Q 033144 2 ASKRILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS 80 (126)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~-n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 80 (126)
|.+||++|+++|++++++++++.+.++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.++|||||||.
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 689999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEccCCCCCCCCcCcHHHHHhHHHHHHHHhhhhhhhhhhc
Q 033144 81 NGNICLDILKEQWSPALTISKVTIFNNLQNYMKVLHTLEKIQT 123 (126)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~l~~~~~~~~~~~~~~~ 123 (126)
+|.||+|+|+++|+|+++|++||+ +|+++|.+...-.++++
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILl--sl~slL~~PN~~~Pln~ 126 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILL--SLQSLLLSPNPDSPLNT 126 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHH--HHHHHHcCCCCCCCCCh
Confidence 999999999999999999999999 99999998666555544
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-46 Score=256.87 Aligned_cols=119 Identities=66% Similarity=1.200 Sum_probs=113.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccC
Q 033144 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS 80 (126)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 80 (126)
+|.+||.||+++|++++++|+++.++++|+++|+++|.||.+||||||.|++.|.||++||++||+|+|.|+||||||+.
T Consensus 1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEccCCCCCCCCcCcHHHHHhHHHHHHHHhhhhhhhhh
Q 033144 81 NGNICLDILKEQWSPALTISKVTIFNNLQNYMKVLHTLEKI 121 (126)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~l~~~~~~~~~~~~~ 121 (126)
.|.||+|+|+++|+|+++|++||+ +|+++|+...-...+
T Consensus 81 ~G~IclDILk~~WsPAl~i~~Vll--sI~sLL~~PnpddPL 119 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLL--SICSLLSDPNPDDPL 119 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHH--HHHHHhcCCCCCccc
Confidence 999999999999999999999999 999999976544443
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-44 Score=239.85 Aligned_cols=113 Identities=41% Similarity=0.950 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCC
Q 033144 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSN 81 (126)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 81 (126)
|.+||++|+++++++++.|+++.|.++|++.|.+.|.||.+|||+||+|++.++|+++||.+||.|+|++.+||||||.+
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~ 84 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD 84 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEccCCCCCCCCcCcHHHHHhHHHHHHHHhhhh
Q 033144 82 GNICLDILKEQWSPALTISKVTIFNNLQNYMKVLH 116 (126)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~~~l~~~~~~~~ 116 (126)
|.+|+|+|..+|+|+|++.+||+ +||++|+...
T Consensus 85 G~iClDiLqNrWsp~Ydva~ILt--siQslL~dPn 117 (152)
T KOG0419|consen 85 GSICLDILQNRWSPTYDVASILT--SIQSLLNDPN 117 (152)
T ss_pred CcchHHHHhcCCCCchhHHHHHH--HHHHHhcCCC
Confidence 99999999999999999999999 9999998544
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=5.4e-43 Score=244.60 Aligned_cols=119 Identities=62% Similarity=1.185 Sum_probs=113.6
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccC
Q 033144 1 MASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS 80 (126)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 80 (126)
||.+||++|++++++++++++.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++||||+.
T Consensus 1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEccCCCCCCCCcCcHHHHHhHHHHHHHHhhhhhhhhh
Q 033144 81 NGNICLDILKEQWSPALTISKVTIFNNLQNYMKVLHTLEKI 121 (126)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~l~~~~~~~~~~~~~ 121 (126)
+|.||+++|.++|+|++++++||+ +|+++|.....-..+
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~--~i~~ll~~P~~~~p~ 119 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLL--SISSLLTDPNPDDPL 119 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHH--HHHHHHhCCCCCCch
Confidence 999999999999999999999999 999999976554444
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.9e-42 Score=242.97 Aligned_cols=119 Identities=41% Similarity=0.822 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCC
Q 033144 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSN 81 (126)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 81 (126)
+.|||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEccCCCCCCCCcCcHHHHHhHHHHHHHHhhhhhhhhhh
Q 033144 82 GNICLDILKEQWSPALTISKVTIFNNLQNYMKVLHTLEKIQ 122 (126)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~~~l~~~~~~~~~~~~~~ 122 (126)
|.||+++|.++|+|++|+++||+ +|+++|.+.+.-.+++
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~--~i~~ll~~P~~~~pln 121 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLL--SIQALLSAPEPDDPLD 121 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHH--HHHHHHhCCCCCCchH
Confidence 99999999999999999999999 9999999776655554
No 6
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-40 Score=225.94 Aligned_cols=120 Identities=36% Similarity=0.754 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCC
Q 033144 3 SKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNG 82 (126)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G 82 (126)
.|||++|+..|+....+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||+.||+|+|++++||||||..|
T Consensus 31 ~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~G 110 (175)
T KOG0421|consen 31 TKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSG 110 (175)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEccCCCCCCCCcCcHHHHHhHHHHHHHHhhhhhhhhhhcc
Q 033144 83 NICLDILKEQWSPALTISKVTIFNNLQNYMKVLHTLEKIQTH 124 (126)
Q Consensus 83 ~icl~~l~~~W~p~~~i~~il~~~~l~~~~~~~~~~~~~~~~ 124 (126)
.||+|||+++|+..|+|++||+ +||++|-......+|.|+
T Consensus 111 nIcLDILkdKWSa~YdVrTILL--SiQSLLGEPNn~SPLNaq 150 (175)
T KOG0421|consen 111 NICLDILKDKWSAVYDVRTILL--SIQSLLGEPNNSSPLNAQ 150 (175)
T ss_pred cchHHHHHHHHHHHHhHHHHHH--HHHHHhCCCCCCCcchhH
Confidence 9999999999999999999999 999999988888777764
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-39 Score=229.69 Aligned_cols=119 Identities=44% Similarity=0.797 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHhhcCC---CCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccc
Q 033144 2 ASKRILKELRDLQRDP---PTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNI 78 (126)
Q Consensus 2 a~~RL~~E~~~l~~~~---~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 78 (126)
|.+||++|++++.+++ ..||.+...++|+.+..+.|.||+|||||||.|.+.|++|++|||+||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 5799999999999987 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCcEEccCCCCCCCCcCcHHHHHhHHHHHHHHhhhhhhhhhh
Q 033144 79 NS-NGNICLDILKEQWSPALTISKVTIFNNLQNYMKVLHTLEKIQ 122 (126)
Q Consensus 79 ~~-~G~icl~~l~~~W~p~~~i~~il~~~~l~~~~~~~~~~~~~~ 122 (126)
++ +|.||+|+|++.|++++|++++|+ +||++|++.+-..+++
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLi--slQalL~~pEp~dPqD 126 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLI--SLQALLCAPEPKDPQD 126 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHH--HHHHHHcCCCCCChHH
Confidence 95 899999999999999999999999 9999999877665554
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-38 Score=216.43 Aligned_cols=116 Identities=37% Similarity=0.847 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCC-CCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccC
Q 033144 2 ASKRILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS 80 (126)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~-n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 80 (126)
|..-|+++|++|++.+.+|+++...++ |+++|.|.|.||++|.|+||.|+..+.||.+||.+||+++|.+.|||||||.
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 346688999999999999999998776 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEccCCC-------------CCCCCcCcHHHHHhHHHHHHHHhhhhhhh
Q 033144 81 NGNICLDILK-------------EQWSPALTISKVTIFNNLQNYMKVLHTLE 119 (126)
Q Consensus 81 ~G~icl~~l~-------------~~W~p~~~i~~il~~~~l~~~~~~~~~~~ 119 (126)
+|++|++||. +.|+|..|+++|++ ++-++|.+.....
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIll--SiIsmL~~PN~~S 135 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILL--SIISMLNSPNDES 135 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHH--HHHHHHcCCCCCC
Confidence 9999999993 57999999999999 9999998765543
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=5.2e-38 Score=217.31 Aligned_cols=110 Identities=49% Similarity=1.054 Sum_probs=100.6
Q ss_pred HHHHHHHHhhcCCCCCeEEeecCC-CCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCCc
Q 033144 5 RILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGN 83 (126)
Q Consensus 5 RL~~E~~~l~~~~~~~i~~~~~~~-n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~ 83 (126)
||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC-CCCCcCcHHHHHhHHHHHHHHhhhh
Q 033144 84 ICLDILKE-QWSPALTISKVTIFNNLQNYMKVLH 116 (126)
Q Consensus 84 icl~~l~~-~W~p~~~i~~il~~~~l~~~~~~~~ 116 (126)
||+++|.. .|+|++++++||. +|+++|....
T Consensus 81 icl~~l~~~~W~p~~~i~~il~--~i~~ll~~p~ 112 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILL--SIQSLLSEPN 112 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHH--HHHHHHHSTC
T ss_pred chhhhhhcccCCcccccccHHH--HHHHHHhCCC
Confidence 99999985 5999999999999 9999997653
No 10
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-37 Score=211.45 Aligned_cols=120 Identities=36% Similarity=0.790 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecC-----CCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccc
Q 033144 2 ASKRILKELRDLQRDPPTSCSAGPVA-----EDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHP 76 (126)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~-----~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 76 (126)
|+.||++|-+.+.++.+-|+.+.|.. .|++.|++.|.|+.||+||||.|++++.||++||.+||+++|.+++|||
T Consensus 5 ~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HP 84 (158)
T KOG0424|consen 5 ALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHP 84 (158)
T ss_pred HHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCC
Confidence 68999999999999999999999875 3789999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEccCCCCC--CCCcCcHHHHHhHHHHHHHHhhhhhhhhhhc
Q 033144 77 NINSNGNICLDILKEQ--WSPALTISKVTIFNNLQNYMKVLHTLEKIQT 123 (126)
Q Consensus 77 nV~~~G~icl~~l~~~--W~p~~~i~~il~~~~l~~~~~~~~~~~~~~~ 123 (126)
|||++|.|||++|.++ |+|+.||..||+ +||.+|.+...-+..+|
T Consensus 85 NVypsgtVcLsiL~e~~~W~paitikqiL~--gIqdLL~~Pn~~~pAq~ 131 (158)
T KOG0424|consen 85 NVYPSGTVCLSILNEEKDWRPAITIKQILL--GIQDLLDTPNITSPAQT 131 (158)
T ss_pred CcCCCCcEehhhhccccCCCchhhHHHHHH--HHHHHhcCCCCCCchhh
Confidence 9999999999999765 999999999999 99999998877666554
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=5.7e-37 Score=212.44 Aligned_cols=114 Identities=53% Similarity=1.058 Sum_probs=108.5
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCCc
Q 033144 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGN 83 (126)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~ 83 (126)
|||++|+++++++++.|+.+.+.++|+++|+++|.||++|||+||.|++.+.||++||++||+|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCC-CCCcCcHHHHHhHHHHHHHHhhhhhhh
Q 033144 84 ICLDILKEQ-WSPALTISKVTIFNNLQNYMKVLHTLE 119 (126)
Q Consensus 84 icl~~l~~~-W~p~~~i~~il~~~~l~~~~~~~~~~~ 119 (126)
||+++|... |+|++++++||. +|+++|.....-.
T Consensus 82 icl~~l~~~~W~p~~~l~~il~--~i~~~l~~p~~~~ 116 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLL--SLQSLLNEPNPSD 116 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHH--HHHHHHhCCCCCC
Confidence 999999876 999999999999 9999998655433
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-37 Score=208.64 Aligned_cols=114 Identities=38% Similarity=0.886 Sum_probs=107.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCeEEeecC-CCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccccc
Q 033144 1 MASKRILKELRDLQRDPPTSCSAGPVA-EDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN 79 (126)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~-~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 79 (126)
+|+|||++||++|-.++++||.+.|.+ +|+++|.+.|.||++|+|+||.|..++.||.+||.+||+++|...+||||||
T Consensus 4 ~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy 83 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY 83 (165)
T ss_pred hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc
Confidence 489999999999999999999999886 5899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEccCCC-------------CCCCCcCcHHHHHhHHHHHHHHhhhh
Q 033144 80 SNGNICLDILK-------------EQWSPALTISKVTIFNNLQNYMKVLH 116 (126)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~i~~il~~~~l~~~~~~~~ 116 (126)
.+|+||+++|. +.|+|.++|+.||+ ++.|+|+...
T Consensus 84 ~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILL--SV~SMLaEPN 131 (165)
T KOG0426|consen 84 PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILL--SVVSMLAEPN 131 (165)
T ss_pred CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHH--HHHHHHcCCC
Confidence 99999999993 57999999999999 9999998543
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=4.4e-35 Score=203.85 Aligned_cols=111 Identities=56% Similarity=1.115 Sum_probs=105.9
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCC-CCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCC
Q 033144 4 KRILKELRDLQRDPPTSCSAGPVAE-DMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNG 82 (126)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~-n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G 82 (126)
+||++|++++++++++|+.+.+.++ |+++|+++|.||++|||+||.|++.+.||++||++||+|+|.++++||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999998876 999999999999999999999999999999999999999999999999999999
Q ss_pred cEEccCCC-CCCCCcCcHHHHHhHHHHHHHHhhhh
Q 033144 83 NICLDILK-EQWSPALTISKVTIFNNLQNYMKVLH 116 (126)
Q Consensus 83 ~icl~~l~-~~W~p~~~i~~il~~~~l~~~~~~~~ 116 (126)
.||+++|. ++|+|+++++++|. +|+++|....
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~--~i~~~l~~p~ 113 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLL--SIQSLLSEPN 113 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHH--HHHHHHhCCC
Confidence 99999998 89999999999999 9999997643
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-34 Score=193.22 Aligned_cols=110 Identities=35% Similarity=0.762 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccc-ccccccC
Q 033144 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKV-FHPNINS 80 (126)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnV~~ 80 (126)
|.+||+||+.+++.+++.|+... ..+|+..|.+.+.|.+||.|+|..|.++++||+.||++.|+|.|+.++ .|||||.
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYS 94 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYS 94 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceec
Confidence 67999999999999999999877 778999999999999999999999999999999999999999999886 7999999
Q ss_pred CCcEEccCCCCCCCCcCcHHHHHhHHHHHHHHhh
Q 033144 81 NGNICLDILKEQWSPALTISKVTIFNNLQNYMKV 114 (126)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~~l~~~~~~ 114 (126)
||.||+|+|.+.|+|++++.+|.+ +|.++|.+
T Consensus 95 NGHICL~iL~d~WsPAmsv~SvCl--SIlSMLSS 126 (161)
T KOG0427|consen 95 NGHICLDILYDSWSPAMSVQSVCL--SILSMLSS 126 (161)
T ss_pred CCeEEEEeecccCCcchhhHHHHH--HHHHHHcc
Confidence 999999999999999999999999 99999984
No 15
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.8e-32 Score=196.76 Aligned_cols=120 Identities=34% Similarity=0.706 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCC
Q 033144 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSN 81 (126)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 81 (126)
|.|||+|||+.|.++|.++|.+.|..+|+.+||.++.||++|||+||.|+..+.||.+||++||.|++.|| +..+-.+
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktn 83 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTN 83 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999986 3445567
Q ss_pred CcEEccCC---CCCCCCcCcHHHHHhHHHHHHHHh-hhhhhhhhhccC
Q 033144 82 GNICLDIL---KEQWSPALTISKVTIFNNLQNYMK-VLHTLEKIQTHT 125 (126)
Q Consensus 82 G~icl~~l---~~~W~p~~~i~~il~~~~l~~~~~-~~~~~~~~~~~~ 125 (126)
-++||++- .+.|+|+++|++||. +|.|+|. .-...++|.|++
T Consensus 84 tRLCLSiSDfHPdsWNP~WsVStILt--GLlSFM~e~~pTtGSI~tS~ 129 (244)
T KOG0894|consen 84 TRLCLSISDFHPDSWNPGWSVSTILT--GLLSFMTEDSPTTGSIETSD 129 (244)
T ss_pred ceEEEeccccCcCcCCCcccHHHHHH--HHHHHHhcCCCccCcccccH
Confidence 89999877 589999999999999 9999998 455677777764
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.8e-32 Score=183.83 Aligned_cols=119 Identities=35% Similarity=0.743 Sum_probs=106.6
Q ss_pred ChHHHHHHHHHHhhcCCCCCeE-EeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccccc
Q 033144 1 MASKRILKELRDLQRDPPTSCS-AGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN 79 (126)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~-~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 79 (126)
+|.+||+||+.+|++++...+. +..+++|++.|.+.|. |++-||..|.|+++|.||.+|||+||+|+|.|+|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4789999999999998776553 4556789999999998 8999999999999999999999999999999999999999
Q ss_pred CCCcEEccCC-CCCCCCcCcHHHHHhHHHHHHHHhhhhhhhhhh
Q 033144 80 SNGNICLDIL-KEQWSPALTISKVTIFNNLQNYMKVLHTLEKIQ 122 (126)
Q Consensus 80 ~~G~icl~~l-~~~W~p~~~i~~il~~~~l~~~~~~~~~~~~~~ 122 (126)
+.|.+|+.++ .++|.|+.++++||+ +|.+++...+--..+|
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlq--aLi~liN~P~pe~plr 122 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQ--ALIALINDPEPEHPLR 122 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHH--HHHHHhcCCCccccch
Confidence 9999999999 589999999999999 8888888666555554
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.5e-30 Score=180.21 Aligned_cols=111 Identities=37% Similarity=0.736 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHhhcCCCCCeEE----eecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccc
Q 033144 2 ASKRILKELRDLQRDPPTSCSA----GPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPN 77 (126)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~----~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 77 (126)
|+-||++|..+++ -+++++. .+.+-+..+.+++|. |+++.|+||.|.|.+.+|+.||++||+|+|++++||||
T Consensus 29 a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 29 ALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred HHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 5678888888874 4555542 223333336999997 99999999999999999999999999999999999999
Q ss_pred ccCCCcEEccCCCCCCCCcCcHHHHHhHHHHHHHHhhhhh
Q 033144 78 INSNGNICLDILKEQWSPALTISKVTIFNNLQNYMKVLHT 117 (126)
Q Consensus 78 V~~~G~icl~~l~~~W~p~~~i~~il~~~~l~~~~~~~~~ 117 (126)
|+.+|.||++||+++|+|+.++.+|+. +|+++......
T Consensus 106 Id~~GnVCLnILRedW~P~lnL~sIi~--GL~~LF~epn~ 143 (184)
T KOG0420|consen 106 IDLDGNVCLNILREDWRPVLNLNSIIY--GLQFLFLEPNP 143 (184)
T ss_pred cCCcchHHHHHHHhcCccccchHHHHH--HHHHHhccCCC
Confidence 999999999999999999999999999 99999876553
No 18
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.4e-29 Score=175.74 Aligned_cols=100 Identities=34% Similarity=0.784 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccC-
Q 033144 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINS- 80 (126)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~- 80 (126)
+.||+..|...|... +..+...++++.+++|.+.||.+|||+||.++++|.+|++||++.|+|.|+++||||||+.
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 468999999888753 4467888889999999999999999999999999999999999999999999999999995
Q ss_pred CCcEEccCCCCCCCCcCcHHHHHh
Q 033144 81 NGNICLDILKEQWSPALTISKVTI 104 (126)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~ 104 (126)
+|.||||.+++.|+|.+.+..|+-
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfe 104 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFE 104 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHH
Confidence 899999999999999999998886
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-28 Score=173.22 Aligned_cols=109 Identities=39% Similarity=0.754 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCC
Q 033144 3 SKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNG 82 (126)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G 82 (126)
+|.+.+|++.+...|+.||.|.+.++|+....+.|.||.||||++|.|+..+.+..+||.+||+-.|+|+||||||-.+|
T Consensus 12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG 91 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG 91 (223)
T ss_pred HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEccCCCCCCCCcCcHHHHHhHHHHHHHHh
Q 033144 83 NICLDILKEQWSPALTISKVTIFNNLQNYMK 113 (126)
Q Consensus 83 ~icl~~l~~~W~p~~~i~~il~~~~l~~~~~ 113 (126)
.||++.|+.+|+|..+|+.||+ .++-+|.
T Consensus 92 EICVNtLKkDW~p~LGirHvLl--tikCLLI 120 (223)
T KOG0423|consen 92 EICVNTLKKDWNPSLGIRHVLL--TIKCLLI 120 (223)
T ss_pred eehhhhhhcccCcccchhhHhh--hhheeee
Confidence 9999999999999999999998 6665554
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.9e-25 Score=161.78 Aligned_cols=108 Identities=36% Similarity=0.765 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCC
Q 033144 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSN 81 (126)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 81 (126)
|.|||++|.++++ +|...+.+.|.++|+++|+.+|.||.+|-|+||.|+.+|.||.+||++||.+..+|+ +..+..+
T Consensus 12 aVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVN 88 (314)
T ss_pred HHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeC
Confidence 6899999999998 788888899999999999999999999999999999999999999999999999986 4456678
Q ss_pred CcEEccCCC---CCCCCcCcHHHHHhHHHHHHHHhh
Q 033144 82 GNICLDILK---EQWSPALTISKVTIFNNLQNYMKV 114 (126)
Q Consensus 82 G~icl~~l~---~~W~p~~~i~~il~~~~l~~~~~~ 114 (126)
-+||+++-. +.|.|+|+|++.|+ +|--||..
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALl--AlIgFmPt 122 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALL--ALIGFMPT 122 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHH--HHHccccC
Confidence 899999884 89999999999999 99999873
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.7e-19 Score=149.41 Aligned_cols=108 Identities=30% Similarity=0.646 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc--cccccccCC
Q 033144 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK--VFHPNINSN 81 (126)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPnV~~~ 81 (126)
+..+.|++-|..+.+.||.|...++.+.-..+.|.|+.+|||.+|.|.|.+.||++||.+||.+...+. .++||.|.+
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 445667888888899999999999999889999999999999999999999999999999999999875 579999999
Q ss_pred CcEEccCCC-------CCCCCcCcHHHHHhHHHHHHHHh
Q 033144 82 GNICLDILK-------EQWSPALTISKVTIFNNLQNYMK 113 (126)
Q Consensus 82 G~icl~~l~-------~~W~p~~~i~~il~~~~l~~~~~ 113 (126)
|+||+++|+ +.|+|+-+|.++|+ ++|.+.-
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~--s~q~l~l 970 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLV--SIQGLVL 970 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHH--Hhhhhhc
Confidence 999999994 77999999999999 9998865
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=9.2e-17 Score=136.90 Aligned_cols=111 Identities=36% Similarity=0.690 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc---ccccccc
Q 033144 3 SKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK---VFHPNIN 79 (126)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~HPnV~ 79 (126)
.+|+++|++.+.++.++|+.+.+.+..+...++.|.||.++||++|.|.|.|.||..||..||.+++.+. .+.||.|
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY 363 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY 363 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999986 5899999
Q ss_pred CCCcEEccCCC-------CCCCCc-CcHHHHHhHHHHHHHHhhh
Q 033144 80 SNGNICLDILK-------EQWSPA-LTISKVTIFNNLQNYMKVL 115 (126)
Q Consensus 80 ~~G~icl~~l~-------~~W~p~-~~i~~il~~~~l~~~~~~~ 115 (126)
.+|+||+++|. +.|+|. .++.++|. +||.++...
T Consensus 364 n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~--sIQ~Li~~e 405 (1101)
T KOG0895|consen 364 NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLE--SIQGLILNE 405 (1101)
T ss_pred cCceEEeeeeeecccccccCCCccccchhhhhh--hhhhhhccc
Confidence 99999999992 789999 89999999 999998765
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.4e-15 Score=108.19 Aligned_cols=112 Identities=27% Similarity=0.396 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCC--CCCeEEEecccccccccC-
Q 033144 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPF--KPPKVAFKTKVFHPNINS- 80 (126)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnV~~- 80 (126)
..|+.|+..+.+.+.+||+|.|.-.|-+.|.++|++ ..+.|+||.|+|.|.+|++||. +-|+|.|.+.++||+|.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 357889999999999999999999999999999995 6678999999999999999995 679999999999999996
Q ss_pred CCcEEccCCCCCCCCcC-cHHHHHhHHHHHHHHhhhhhh
Q 033144 81 NGNICLDILKEQWSPAL-TISKVTIFNNLQNYMKVLHTL 118 (126)
Q Consensus 81 ~G~icl~~l~~~W~p~~-~i~~il~~~~l~~~~~~~~~~ 118 (126)
++.+|++-....|+-.- .|-.+|. -||......++.
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~--ylqriF~dpd~s 137 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLV--YLQRIFYDPDVS 137 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHH--HHHHHhcCcccc
Confidence 89999988877796554 6777777 566666554443
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.9e-15 Score=100.83 Aligned_cols=113 Identities=29% Similarity=0.468 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhcCCCCCe-EEeecC-CC--CceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccccccccc
Q 033144 4 KRILKELRDLQRDPPTSC-SAGPVA-ED--MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNIN 79 (126)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i-~~~~~~-~n--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 79 (126)
-||.+|+.+-++.-.++. +....+ +| +..|..+|.||+.|+||+..|.++|...++||..||+|+|.+++--.-|+
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn 87 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN 87 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence 478888888877655554 333333 23 56899999999999999999999999999999999999999999877777
Q ss_pred C-CCcEEccCC--CCCCCCcCcHHHHHhHHHHHHHHhhhhhh
Q 033144 80 S-NGNICLDIL--KEQWSPALTISKVTIFNNLQNYMKVLHTL 118 (126)
Q Consensus 80 ~-~G~icl~~l--~~~W~p~~~i~~il~~~~l~~~~~~~~~~ 118 (126)
. +|.+.-..+ -.+|+-.++++.+|. .++-.|++.++.
T Consensus 88 ~~~g~Vd~~~i~~L~~W~~~y~~~~vl~--~lr~~m~~~eN~ 127 (138)
T KOG0896|consen 88 SSNGVVDPRDITVLARWQRSYSIKMVLG--QLRKEMMSKENR 127 (138)
T ss_pred cCCCccCccccchhhcccccchhhHHHH--hhhHHHHHHHhh
Confidence 4 667664322 288999999999999 999988877764
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1e-08 Score=67.99 Aligned_cols=61 Identities=23% Similarity=0.539 Sum_probs=49.9
Q ss_pred EEEEEeCCCCCCCCCCeEEEeccc-ccccccCCCcEEccCC-CCCCCCcCcHHHHHhHHHHHHHH
Q 033144 50 FVVTIHFPPDYPFKPPKVAFKTKV-FHPNINSNGNICLDIL-KEQWSPALTISKVTIFNNLQNYM 112 (126)
Q Consensus 50 f~~~i~fp~~YP~~pP~v~f~t~i-~HPnV~~~G~icl~~l-~~~W~p~~~i~~il~~~~l~~~~ 112 (126)
..+.+.|++|||+.||.++.+.|. --.-|-.+|.||+.+| .++|+.+++|+.++. ++...+
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~--qiaatl 75 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIM--QIAATL 75 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHH--HHHHHh
Confidence 567788999999999999988654 2334557899999999 588999999999998 666554
No 26
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.72 E-value=1.5e-08 Score=69.70 Aligned_cols=106 Identities=17% Similarity=0.224 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhcC-------CCCCeEEeecCCCCceEEEEEECCCCCCCCCC--EEEEEEeCCCCCCCCCCeEEEecc-
Q 033144 3 SKRILKELRDLQRD-------PPTSCSAGPVAEDMFHWQATIIGPNDSPYAGG--VFVVTIHFPPDYPFKPPKVAFKTK- 72 (126)
Q Consensus 3 ~~RL~~E~~~l~~~-------~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg--~f~~~i~fp~~YP~~pP~v~f~t~- 72 (126)
..||.+||+.|-+. ....+.++ .+.+-..|.+.-.- .++-- .|.+++.+|..||..||.|....-
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLd 100 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPELD 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccccC
Confidence 47999999997542 12233333 23333444433210 01112 256666779999999999987531
Q ss_pred cccccccCCCcEEccCCC----CCCCCcCcHHHHHhHHHHHHHHhh
Q 033144 73 VFHPNINSNGNICLDILK----EQWSPALTISKVTIFNNLQNYMKV 114 (126)
Q Consensus 73 i~HPnV~~~G~icl~~l~----~~W~p~~~i~~il~~~~l~~~~~~ 114 (126)
--..-.|..|+||++... .+=.|.++|...+.| +|--+|++
T Consensus 101 GKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHalaL-GL~PWLA~ 145 (161)
T PF08694_consen 101 GKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHALAL-GLGPWLAV 145 (161)
T ss_dssp TT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHHHH-THHHHHHH
T ss_pred CchhhhhcCceEeeecccchhhhhcCCchhHHHHHHh-ccchhhhh
Confidence 224456789999999884 344899999998864 88888874
No 27
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.71 E-value=4.4e-08 Score=67.26 Aligned_cols=66 Identities=27% Similarity=0.732 Sum_probs=57.9
Q ss_pred CCCEEEEEEeCCCCCCCCCCeEEEeccc---ccccccCCCcEEc---cCCCCCCCCcCcHHHHHhHHHHHHHHh
Q 033144 46 AGGVFVVTIHFPPDYPFKPPKVAFKTKV---FHPNINSNGNICL---DILKEQWSPALTISKVTIFNNLQNYMK 113 (126)
Q Consensus 46 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~G~icl---~~l~~~W~p~~~i~~il~~~~l~~~~~ 113 (126)
.++.+.+.+.||++||..||.|....+- +-|||+.+|.+|+ +..-+.|.|.-.+..+|. +.+.+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~--~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLE--RAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHH--HHHHHHH
Confidence 5789999999999999999999998654 6899999999999 777899999999998887 6666665
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.36 E-value=1.8e-06 Score=58.47 Aligned_cols=71 Identities=25% Similarity=0.567 Sum_probs=46.6
Q ss_pred CCceEEEEEECCCCCCCCCCEEE--EEEeCCCCCCCCCCeEEEeccc-----ccccccCCCcEEccCCCCCCCC-cCcHH
Q 033144 29 DMFHWQATIIGPNDSPYAGGVFV--VTIHFPPDYPFKPPKVAFKTKV-----FHPNINSNGNICLDILKEQWSP-ALTIS 100 (126)
Q Consensus 29 n~~~w~~~i~gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~HPnV~~~G~icl~~l~~~W~p-~~~i~ 100 (126)
.+....++|. -.|+|..|. +.|-+|.+||.+||.+...... -+.+|+.+|+|.+..| ++|++ ..++.
T Consensus 31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~ 105 (121)
T PF05743_consen 31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLV 105 (121)
T ss_dssp EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HH
T ss_pred eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHH
Confidence 3556666664 257777775 5566899999999999886432 2449999999999888 77988 67766
Q ss_pred HHHh
Q 033144 101 KVTI 104 (126)
Q Consensus 101 ~il~ 104 (126)
.++.
T Consensus 106 ~lv~ 109 (121)
T PF05743_consen 106 DLVQ 109 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6555
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=1.1e-05 Score=54.91 Aligned_cols=104 Identities=20% Similarity=0.372 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCE----------EEEEEeCCCCCCCCCCeEEEecc
Q 033144 3 SKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGV----------FVVTIHFPPDYPFKPPKVAFKTK 72 (126)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v~f~t~ 72 (126)
.+||.+||+.|-+ +++...++-..|.-.-..++||-|-|.+ |.+++.+|-.||..+|.+....-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 5899999999865 2333344444564444457777777754 55666679999999999876321
Q ss_pred -cccccccCCCcEEccCC-CCCC---CCcCcHHHHHhHHHHHHHHh
Q 033144 73 -VFHPNINSNGNICLDIL-KEQW---SPALTISKVTIFNNLQNYMK 113 (126)
Q Consensus 73 -i~HPnV~~~G~icl~~l-~~~W---~p~~~i~~il~~~~l~~~~~ 113 (126)
--.-..|..|+||+.-. +.-| .|.++|...+.| +|--+|+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~al-gl~pwla 147 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAMAL-GLAPWLA 147 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHHHh-ccchhhh
Confidence 11234567899998655 3446 677788777653 7777776
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=97.10 E-value=0.0022 Score=41.68 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEEC--CCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc
Q 033144 3 SKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIG--PNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK 72 (126)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 72 (126)
..+...|+..|+.--++.. ......+...+.+.+.. ...+.-....+.+.+.||++||..+|.|...+.
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 3567788888887655544 22234455566666632 233344456899999999999999999987754
No 31
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.0099 Score=46.64 Aligned_cols=70 Identities=23% Similarity=0.549 Sum_probs=50.5
Q ss_pred CCceEEEEEECCCCCCCCCCEEEEEEe--CCCCCCCCCCeEEEecc-----cccccccCCCcEEccCCCCCCCCc-CcHH
Q 033144 29 DMFHWQATIIGPNDSPYAGGVFVVTIH--FPPDYPFKPPKVAFKTK-----VFHPNINSNGNICLDILKEQWSPA-LTIS 100 (126)
Q Consensus 29 n~~~w~~~i~gp~~tpy~gg~f~~~i~--fp~~YP~~pP~v~f~t~-----i~HPnV~~~G~icl~~l~~~W~p~-~~i~ 100 (126)
+++...++|. .+|.|.+|.+-|. +.+.||+.||.+..... -.|-||+.+|+|.|..| .+|.+. .++.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHH
Confidence 4555555554 5688888776555 69999999999876532 13899999999999999 668654 4544
Q ss_pred HHH
Q 033144 101 KVT 103 (126)
Q Consensus 101 ~il 103 (126)
.++
T Consensus 126 ~Li 128 (365)
T KOG2391|consen 126 GLI 128 (365)
T ss_pred HHH
Confidence 433
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.62 E-value=0.016 Score=37.21 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=22.8
Q ss_pred CCCEEEEEEeCCCCCCCCCCeEEEecc
Q 033144 46 AGGVFVVTIHFPPDYPFKPPKVAFKTK 72 (126)
Q Consensus 46 ~gg~f~~~i~fp~~YP~~pP~v~f~t~ 72 (126)
..-.+.+.+.||++||..+|.+.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999988754
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.47 E-value=0.054 Score=36.77 Aligned_cols=92 Identities=18% Similarity=0.322 Sum_probs=58.3
Q ss_pred CCeEEeecCCCCceEEEEEEC--CCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccc-------ccccc-----CCCcE
Q 033144 19 TSCSAGPVAEDMFHWQATIIG--PNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVF-------HPNIN-----SNGNI 84 (126)
Q Consensus 19 ~~i~~~~~~~n~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~-------HPnV~-----~~G~i 84 (126)
.|+..+...+.-..|.+ |.| -+.+.|....-.+-|.+|..||..+|-+.+..|-. .||-. -+|+.
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~ 90 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRT 90 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCee
Confidence 36666766666677866 555 56677999999999999999999988776665422 12111 02332
Q ss_pred E--ccCCCCCCCCcC-cHHHHHhHHHHHHHHh
Q 033144 85 C--LDILKEQWSPAL-TISKVTIFNNLQNYMK 113 (126)
Q Consensus 85 c--l~~l~~~W~p~~-~i~~il~~~~l~~~~~ 113 (126)
- .|.....|+|.. ++.+.|. -+...|.
T Consensus 91 wQrWSRH~~~W~P~~D~l~T~l~--~v~~~L~ 120 (122)
T PF14462_consen 91 WQRWSRHNNPWRPGVDDLWTHLA--RVEHALA 120 (122)
T ss_pred eeeecCCCCCCCCCCCcHHHHHH--HHHHHHh
Confidence 2 233346699976 5666555 4555443
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=96.26 E-value=0.052 Score=38.54 Aligned_cols=61 Identities=30% Similarity=0.531 Sum_probs=49.0
Q ss_pred EEEEeCCCCCCCCCCeEEEecccc---cccccCC-----CcEEccCCC-CCCCCcCcHHHHHhHHHHHHHHh
Q 033144 51 VVTIHFPPDYPFKPPKVAFKTKVF---HPNINSN-----GNICLDILK-EQWSPALTISKVTIFNNLQNYMK 113 (126)
Q Consensus 51 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnV~~~-----G~icl~~l~-~~W~p~~~i~~il~~~~l~~~~~ 113 (126)
.+.+.|+.+||..+|.|.+.-..| +||++.. ..+|+.--. ..|.+..+++.+|. .|.-|+.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~--rl~~Wl~ 125 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLD--RLFDWLR 125 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHH--HHHHHHH
Confidence 467899999999999887765433 5888865 689985443 67999999999999 8999887
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=92.03 E-value=0.31 Score=37.75 Aligned_cols=85 Identities=20% Similarity=0.477 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccccccccCCCc
Q 033144 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVFHPNINSNGN 83 (126)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~ 83 (126)
++|.+|+.++..+.. +.+ ..++++...++.+... .....+++.++.+||.++|.+...-++ .
T Consensus 102 s~ll~EIe~IGW~kl--~~i-~~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~-~-------- 163 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKL--VQI-QFDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPI-P-------- 163 (291)
T ss_dssp -CHHHHHHHHHCGCC--EEE-EE-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS----------
T ss_pred HHHHHHHHHhccccc--eEE-ecCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCc-c--------
Confidence 567888888865432 111 2367888888888731 257899999999999999975332221 1
Q ss_pred EEccCCCCCCCC-cCcHHHHHhHHHHHHHHh
Q 033144 84 ICLDILKEQWSP-ALTISKVTIFNNLQNYMK 113 (126)
Q Consensus 84 icl~~l~~~W~p-~~~i~~il~~~~l~~~~~ 113 (126)
+...|++ ..++.+++. +.+..+.
T Consensus 164 -----~~~~w~~~~ssL~~v~~--qF~~~le 187 (291)
T PF09765_consen 164 -----FSLSWSPSQSSLKDVVQ--QFQEALE 187 (291)
T ss_dssp -----HHHHHHCHT-SHHHHHH--HHHHHHH
T ss_pred -----hhhhhcccccCHHHHHH--HHHHHHH
Confidence 1135888 778888887 4444443
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.76 E-value=2.6 Score=36.95 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCC-CCCeEEEecc
Q 033144 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPF-KPPKVAFKTK 72 (126)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~-~pP~v~f~t~ 72 (126)
+-|.+|+.-+-.. -+.+.++-.+-.-..-.+.+.+|-.---.....++.|.||.+||. .+|++.|..+
T Consensus 423 QnLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3456666665432 223333322222234555666644332112235788999999999 5799999754
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=86.59 E-value=2 Score=31.79 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCCCCe-EEeecCCCCceEEEEEECC--CCCCCCCCEEEEEEeCCCCCCCCCCeEEEe
Q 033144 7 LKELRDLQRDPPTSC-SAGPVAEDMFHWQATIIGP--NDSPYAGGVFVVTIHFPPDYPFKPPKVAFK 70 (126)
Q Consensus 7 ~~E~~~l~~~~~~~i-~~~~~~~n~~~w~~~i~gp--~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 70 (126)
.+|+..|....+... .+. +.+...+.++|.-- .+.-+.+ .+.+.+.++++||.++|.+.+.
T Consensus 8 e~E~EaLeSIY~de~~~i~--~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 8 EEELEALESIYPDEFKHIN--SEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHhccchhhhhh--ccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 345666665444333 222 23333355666521 1122223 7899999999999999999443
No 38
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=71.99 E-value=6.8 Score=27.01 Aligned_cols=24 Identities=33% Similarity=0.668 Sum_probs=22.1
Q ss_pred CCEEEEEEeCCCCCC-CCCCeEEEe
Q 033144 47 GGVFVVTIHFPPDYP-FKPPKVAFK 70 (126)
Q Consensus 47 gg~f~~~i~fp~~YP-~~pP~v~f~ 70 (126)
.|.|.|.-.+|-.|| ..||.|+|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 478999999999999 999999986
No 39
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=69.44 E-value=8 Score=28.04 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=22.9
Q ss_pred CCCEEEEEEeCCCCCCCCCCeEEEec
Q 033144 46 AGGVFVVTIHFPPDYPFKPPKVAFKT 71 (126)
Q Consensus 46 ~gg~f~~~i~fp~~YP~~pP~v~f~t 71 (126)
+.|.|.|.=.+|--||.++|.|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35789999999999999999999863
No 40
>smart00340 HALZ homeobox associated leucin zipper.
Probab=65.79 E-value=5.8 Score=21.88 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhcC
Q 033144 3 SKRILKELRDLQRD 16 (126)
Q Consensus 3 ~~RL~~E~~~l~~~ 16 (126)
.+||++|+++|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 58999999998754
No 41
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=63.13 E-value=13 Score=26.15 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=21.8
Q ss_pred CCEEEEEEeCCCCCC-----CCCCeEEEe
Q 033144 47 GGVFVVTIHFPPDYP-----FKPPKVAFK 70 (126)
Q Consensus 47 gg~f~~~i~fp~~YP-----~~pP~v~f~ 70 (126)
.|.|.|+-.+|--|| ..||.|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 478999999999999 899999986
No 42
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=62.04 E-value=4 Score=29.12 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=11.8
Q ss_pred ccccCCCcEEccCC
Q 033144 76 PNINSNGNICLDIL 89 (126)
Q Consensus 76 PnV~~~G~icl~~l 89 (126)
+||+.+|+||+...
T Consensus 98 ~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 98 FNVYSNGSVCWGNN 111 (175)
T ss_pred cccCCCCcEeeCCC
Confidence 49999999998653
No 43
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=54.90 E-value=6.4 Score=29.53 Aligned_cols=14 Identities=43% Similarity=0.558 Sum_probs=11.6
Q ss_pred ccccCCCcEEccCC
Q 033144 76 PNINSNGNICLDIL 89 (126)
Q Consensus 76 PnV~~~G~icl~~l 89 (126)
+||+.+|+||+.-.
T Consensus 139 fNV~~~G~VC~G~~ 152 (228)
T TIGR03737 139 FNVWSNGEICAGNA 152 (228)
T ss_pred CccCCCCeEeeCCC
Confidence 39999999998654
No 44
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=54.59 E-value=17 Score=28.64 Aligned_cols=25 Identities=16% Similarity=0.390 Sum_probs=22.3
Q ss_pred CEEEEEEeCCCCCCCCCCeEEEecc
Q 033144 48 GVFVVTIHFPPDYPFKPPKVAFKTK 72 (126)
Q Consensus 48 g~f~~~i~fp~~YP~~pP~v~f~t~ 72 (126)
-.+.+.+..++.||.+.|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4588999999999999999999876
No 45
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=53.25 E-value=22 Score=25.90 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.2
Q ss_pred CCEEEEEEeCCCCCCC-----CCCeEEEe
Q 033144 47 GGVFVVTIHFPPDYPF-----KPPKVAFK 70 (126)
Q Consensus 47 gg~f~~~i~fp~~YP~-----~pP~v~f~ 70 (126)
.|.|.|+-..|-.||. .||.|+|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4779999999999998 89998875
No 46
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=52.84 E-value=55 Score=20.47 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=28.8
Q ss_pred ceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecccc
Q 033144 31 FHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTKVF 74 (126)
Q Consensus 31 ~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 74 (126)
.+|.+.+.|+.+.....-.=++...+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999999887765566677888888888886 6666665543
No 47
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=51.05 E-value=26 Score=25.38 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.5
Q ss_pred CCEEEEEEeCCCCCCC-----CCCeEEEe
Q 033144 47 GGVFVVTIHFPPDYPF-----KPPKVAFK 70 (126)
Q Consensus 47 gg~f~~~i~fp~~YP~-----~pP~v~f~ 70 (126)
.|.|.|.-.+|--||. .||.|+|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3779999999999995 88888775
No 48
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=50.76 E-value=72 Score=25.37 Aligned_cols=57 Identities=28% Similarity=0.548 Sum_probs=40.1
Q ss_pred CceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEec-ccccccccCCCcEEccCCCCCCCCcCc
Q 033144 30 MFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKT-KVFHPNINSNGNICLDILKEQWSPALT 98 (126)
Q Consensus 30 ~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPnV~~~G~icl~~l~~~W~p~~~ 98 (126)
...+.+.| ||.|...+-+|.|...||..||-+.|-. .-|+|-.. . +..| .+|.+.-.
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp 110 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDP 110 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCc
Confidence 44555555 5889999999999999999999999963 34777321 1 1222 57876653
No 49
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=46.81 E-value=29 Score=27.58 Aligned_cols=23 Identities=26% Similarity=0.701 Sum_probs=20.7
Q ss_pred EEEEEEeCCCCCCCCCCeEEEec
Q 033144 49 VFVVTIHFPPDYPFKPPKVAFKT 71 (126)
Q Consensus 49 ~f~~~i~fp~~YP~~pP~v~f~t 71 (126)
.|-+.+.+|..||.+.|.++|.+
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe
Confidence 57888889999999999999976
No 50
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=44.65 E-value=23 Score=30.18 Aligned_cols=29 Identities=34% Similarity=0.843 Sum_probs=23.7
Q ss_pred CCCCCCEEEEEEeCCCCCCC---CCCeEEEecc
Q 033144 43 SPYAGGVFVVTIHFPPDYPF---KPPKVAFKTK 72 (126)
Q Consensus 43 tpy~gg~f~~~i~fp~~YP~---~pP~v~f~t~ 72 (126)
+||.=|.|.+ +.+|++||+ +-|.+.|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 5677787877 457999998 7899999987
No 51
>PRK11700 hypothetical protein; Provisional
Probab=44.25 E-value=1.1e+02 Score=22.24 Aligned_cols=70 Identities=19% Similarity=0.463 Sum_probs=45.7
Q ss_pred CCceEEEEEE---CCCCCCC-CCCEEEEEEeCC--------------CCCCCCCCeE--EEecc------ccccccc-CC
Q 033144 29 DMFHWQATII---GPNDSPY-AGGVFVVTIHFP--------------PDYPFKPPKV--AFKTK------VFHPNIN-SN 81 (126)
Q Consensus 29 n~~~w~~~i~---gp~~tpy-~gg~f~~~i~fp--------------~~YP~~pP~v--~f~t~------i~HPnV~-~~ 81 (126)
.+..|.+-+. =|.+.-| ..|.=++++++| .+.|..++-| ++.+| ..+|-|- .+
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 4456766543 3544555 567889999998 3445555544 44443 5677777 58
Q ss_pred CcEEccCCCCCCCCcCcHHHHHh
Q 033144 82 GNICLDILKEQWSPALTISKVTI 104 (126)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~ 104 (126)
|.+|+.+. -+++..|+-
T Consensus 167 ~~vcIK~H------P~slk~IV~ 183 (187)
T PRK11700 167 GGICIKFH------PHSIKEIVA 183 (187)
T ss_pred CCEEEEEc------CccHHHHHH
Confidence 99999877 477777765
No 52
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=43.61 E-value=67 Score=20.50 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=20.2
Q ss_pred CCCEEEEEEeCCCCCCCCCCeEEEecc
Q 033144 46 AGGVFVVTIHFPPDYPFKPPKVAFKTK 72 (126)
Q Consensus 46 ~gg~f~~~i~fp~~YP~~pP~v~f~t~ 72 (126)
+|..+.|...-|..|| +|.|.+...
T Consensus 17 eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 17 EGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred cCCCEEEEecCCCCCC--CCEEEEECC
Confidence 5667888888899999 589988754
No 53
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=39.25 E-value=1.1e+02 Score=24.91 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=24.6
Q ss_pred eCCCCCCCCCCeEEEecccccccccCCCc
Q 033144 55 HFPPDYPFKPPKVAFKTKVFHPNINSNGN 83 (126)
Q Consensus 55 ~fp~~YP~~pP~v~f~t~i~HPnV~~~G~ 83 (126)
.|...|++.||-+.+.+.+.|--+.++-+
T Consensus 303 ~fr~~~~~t~PyltaeP~i~~HrL~p~Dk 331 (390)
T KOG0700|consen 303 KFRIPYIGTPPYLTAEPSITHHKLTPNDK 331 (390)
T ss_pred hcCCCCCCCCCceeccceEEEEEcCCCCe
Confidence 68889999999999999988777776655
No 54
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=38.41 E-value=49 Score=25.67 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.7
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033144 47 GGVFVVTIHFPPDYP------------------FKPPKVAFK 70 (126)
Q Consensus 47 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 70 (126)
.|.|.|+=.+|.-|| ..||.|+|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 478999999999997 678999885
No 55
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=37.54 E-value=87 Score=25.78 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=12.1
Q ss_pred EEEEEeCCCCCCCC
Q 033144 50 FVVTIHFPPDYPFK 63 (126)
Q Consensus 50 f~~~i~fp~~YP~~ 63 (126)
..+.++||.+|+..
T Consensus 211 k~i~vtFP~dy~a~ 224 (441)
T COG0544 211 KDIKVTFPEDYHAE 224 (441)
T ss_pred eEEEEEcccccchh
Confidence 67889999999983
No 56
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.04 E-value=64 Score=23.53 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCC
Q 033144 3 SKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPND 42 (126)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~ 42 (126)
.+|+++|++.+.++-...++.-|.-+..-.+.+.+.-..+
T Consensus 121 ~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD 160 (203)
T KOG3285|consen 121 LKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKD 160 (203)
T ss_pred HHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCC
Confidence 5899999999999877777777776666677777764443
No 57
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=36.90 E-value=54 Score=25.33 Aligned_cols=24 Identities=25% Similarity=0.656 Sum_probs=20.9
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033144 47 GGVFVVTIHFPPDYP------------------FKPPKVAFK 70 (126)
Q Consensus 47 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 70 (126)
.|.|.|.-..|--|| ..||.|+|.
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 578999999999999 579999885
No 58
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=35.18 E-value=61 Score=24.14 Aligned_cols=24 Identities=25% Similarity=0.664 Sum_probs=20.8
Q ss_pred CCEEEEEEeCCCCCCC-------CCCeEEEe
Q 033144 47 GGVFVVTIHFPPDYPF-------KPPKVAFK 70 (126)
Q Consensus 47 gg~f~~~i~fp~~YP~-------~pP~v~f~ 70 (126)
.|.|.|.-..|--||. .||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5889999999999975 89999884
No 59
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=34.76 E-value=31 Score=20.36 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhc
Q 033144 3 SKRILKELRDLQR 15 (126)
Q Consensus 3 ~~RL~~E~~~l~~ 15 (126)
.+||++|++++.-
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 4799999999853
No 60
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=33.58 E-value=66 Score=24.94 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=20.4
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033144 47 GGVFVVTIHFPPDYP------------------FKPPKVAFK 70 (126)
Q Consensus 47 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 70 (126)
.|.|.|+=..|--|| ..||.|+|.
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 478999999999997 578888875
No 61
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=33.25 E-value=16 Score=18.80 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=9.0
Q ss_pred cccccccCCCc-EEcc
Q 033144 73 VFHPNINSNGN-ICLD 87 (126)
Q Consensus 73 i~HPnV~~~G~-icl~ 87 (126)
-|||.++.+|+ .|-.
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999998775 5543
No 62
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=33.17 E-value=69 Score=23.87 Aligned_cols=24 Identities=25% Similarity=0.659 Sum_probs=21.0
Q ss_pred CCEEEEEEeCCCCCCC-------CCCeEEEe
Q 033144 47 GGVFVVTIHFPPDYPF-------KPPKVAFK 70 (126)
Q Consensus 47 gg~f~~~i~fp~~YP~-------~pP~v~f~ 70 (126)
.|.|.|.=.+|--||. .||.|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5889999999999986 89999884
No 63
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=32.73 E-value=46 Score=22.86 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=19.0
Q ss_pred CCCceEEEEEECCCCCCCC-CCEEEEEEe
Q 033144 28 EDMFHWQATIIGPNDSPYA-GGVFVVTIH 55 (126)
Q Consensus 28 ~n~~~w~~~i~gp~~tpy~-gg~f~~~i~ 55 (126)
.|...|.|++.|++|++.. +..|-+.+.
T Consensus 45 Gd~~~ytVtV~G~dGs~~~~n~tf~~~Fi 73 (139)
T PF04881_consen 45 GDPEWYTVTVQGPDGSIRKSNNTFMYKFI 73 (139)
T ss_pred CCCcceEEEEECCCCcceeccccchheee
Confidence 5677889999999988764 334444333
No 64
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=32.60 E-value=71 Score=24.75 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=20.2
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033144 47 GGVFVVTIHFPPDYP------------------FKPPKVAFK 70 (126)
Q Consensus 47 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 70 (126)
.|.|.|.=.+|..|| ..||.|+|.
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 578999999998887 588888885
No 65
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.42 E-value=45 Score=27.36 Aligned_cols=22 Identities=45% Similarity=0.978 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCCC-CCCeEEEec
Q 033144 50 FVVTIHFPPDYPF-KPPKVAFKT 71 (126)
Q Consensus 50 f~~~i~fp~~YP~-~pP~v~f~t 71 (126)
..+.+.+|++||. +||++...+
T Consensus 76 ivlkf~LP~~YPs~spP~f~l~s 98 (445)
T KOG1814|consen 76 IVLKFHLPNDYPSVSPPKFELKS 98 (445)
T ss_pred eeeeeecCCccccCCCCceeeeh
Confidence 4467788999998 566665443
No 66
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=31.52 E-value=1.2e+02 Score=23.22 Aligned_cols=46 Identities=24% Similarity=0.484 Sum_probs=31.3
Q ss_pred CCCceEEEEEECCCCCCCCCCE----EEEEEeCC-----CCCCCCCCeEEEecccc
Q 033144 28 EDMFHWQATIIGPNDSPYAGGV----FVVTIHFP-----PDYPFKPPKVAFKTKVF 74 (126)
Q Consensus 28 ~n~~~w~~~i~gp~~tpy~gg~----f~~~i~fp-----~~YP~~pP~v~f~t~i~ 74 (126)
.|..-|++.-.. .+|.-..|+ |+..+.+. -+-||+||+|+.+++-|
T Consensus 100 KDp~PWkl~YrV-~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 100 KDPIPWKLYYRV-EDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCCeEEEEEe-ecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 455567777763 444443333 56666664 68999999999998855
No 67
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.95 E-value=23 Score=25.93 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.2
Q ss_pred CCcEEccCCCCCCCCcCcHHHHHh
Q 033144 81 NGNICLDILKEQWSPALTISKVTI 104 (126)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~ 104 (126)
.+..|++++..-|+|.+|++..+.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~ 158 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALD 158 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHH
Confidence 467999999999999999998765
No 68
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=29.70 E-value=88 Score=23.73 Aligned_cols=25 Identities=32% Similarity=0.715 Sum_probs=20.5
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033144 46 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 70 (126)
Q Consensus 46 ~gg~f~~~i~fp~~YP------------------~~pP~v~f~ 70 (126)
+.|.|.|.=..|.-|| ..||.|.|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 3578999999999997 468888875
No 69
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=27.26 E-value=31 Score=22.84 Aligned_cols=20 Identities=35% Similarity=0.762 Sum_probs=16.1
Q ss_pred CCcEEccCCCCCCCCcCcHH
Q 033144 81 NGNICLDILKEQWSPALTIS 100 (126)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~ 100 (126)
.|.+|.-.+..+|+|.+++.
T Consensus 50 Gg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 50 GGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CceEEEEEcCCCCCCCCEEE
Confidence 45678878889999999864
No 70
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=26.86 E-value=44 Score=23.70 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEe---cccccccccCCC
Q 033144 6 ILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFK---TKVFHPNINSNG 82 (126)
Q Consensus 6 L~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~---t~i~HPnV~~~G 82 (126)
+..++++.+..-..|+.+.-...+-...=+++. -...+. .+||.|-+- ..--|+-+...|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~~~~~G~Tvs-----------s~~SvS------ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGDAGRCGITAT-----------AVCSVT------DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecCCCcEEEEEE-----------EEEEeE------cCCCEEEEEECCCCchhHHHHhCC
Confidence 456788888888888876643221111111111 112222 469988764 235688899999
Q ss_pred cEEccCCCC
Q 033144 83 NICLDILKE 91 (126)
Q Consensus 83 ~icl~~l~~ 91 (126)
.+|+++|.+
T Consensus 69 ~F~VnvL~~ 77 (170)
T PRK15486 69 KLCINVLNH 77 (170)
T ss_pred eEEEEEChh
Confidence 999999953
No 71
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=25.76 E-value=1.1e+02 Score=23.34 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=19.9
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033144 47 GGVFVVTIHFPPDYP------------------FKPPKVAFK 70 (126)
Q Consensus 47 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 70 (126)
.|.|.|.=..|--|| ..||.|.|.
T Consensus 156 ~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 197 (256)
T cd03458 156 DGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFM 197 (256)
T ss_pred CCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 478999999999886 578888875
No 72
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=25.67 E-value=41 Score=23.25 Aligned_cols=30 Identities=27% Similarity=0.652 Sum_probs=23.9
Q ss_pred CCCCeEEEe---cccccccccCCCcEEccCCCC
Q 033144 62 FKPPKVAFK---TKVFHPNINSNGNICLDILKE 91 (126)
Q Consensus 62 ~~pP~v~f~---t~i~HPnV~~~G~icl~~l~~ 91 (126)
.+||.|-+. ..--|+.+..+|.+|+++|.+
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~ 68 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAH 68 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcH
Confidence 579998874 235688999999999999953
No 73
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=23.53 E-value=41 Score=23.36 Aligned_cols=17 Identities=35% Similarity=0.901 Sum_probs=13.1
Q ss_pred EEEEEeCCCCCCCCCCe
Q 033144 50 FVVTIHFPPDYPFKPPK 66 (126)
Q Consensus 50 f~~~i~fp~~YP~~pP~ 66 (126)
|+-.-.+|.+||+.+|.
T Consensus 104 YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 104 YRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHhcCCCCCCCccchH
Confidence 55556789999998874
No 74
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=23.52 E-value=94 Score=18.12 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=11.7
Q ss_pred CCCCCcCcHHHHHhHHHHHHHH
Q 033144 91 EQWSPALTISKVTIFNNLQNYM 112 (126)
Q Consensus 91 ~~W~p~~~i~~il~~~~l~~~~ 112 (126)
-+|.|.+++++++. ..-++.
T Consensus 36 LgW~p~~~L~~~i~--~~w~W~ 55 (62)
T PF13950_consen 36 LGWKPKYSLEDMIR--DAWNWQ 55 (62)
T ss_dssp C----SSSHHHHHH--HHHHHH
T ss_pred hCCCcCCCHHHHHH--HHHHHH
Confidence 47999999999987 544443
No 75
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=22.42 E-value=3.2e+02 Score=20.16 Aligned_cols=70 Identities=21% Similarity=0.443 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCC-------------------CCC
Q 033144 2 ASKRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPD-------------------YPF 62 (126)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~-------------------YP~ 62 (126)
+..||.+.++++++.. .+...-|.+......+.-| || |.+.+.|.++ |-.
T Consensus 10 ~~eR~~e~~~~~k~~L---------~~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~ 78 (235)
T PF14135_consen 10 PAERINEALAEYKKIL---------TSAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYRL 78 (235)
T ss_pred HHHHHHHHHHHHHHHH---------hcCCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEEEEE
Confidence 5689888776665421 1111236666662222212 33 6666666533 222
Q ss_pred ---CCCeEEEec--ccccccccCCC
Q 033144 63 ---KPPKVAFKT--KVFHPNINSNG 82 (126)
Q Consensus 63 ---~pP~v~f~t--~i~HPnV~~~G 82 (126)
.-|.+.|.| ++.|--.++++
T Consensus 79 ~~~~gp~LsFdTyN~~iH~~s~p~~ 103 (235)
T PF14135_consen 79 KQDQGPVLSFDTYNEYIHYFSDPSN 103 (235)
T ss_pred ecCCceEEEEEeCCceEEEccCCCc
Confidence 338888876 36777666543
No 76
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=22.13 E-value=3e+02 Score=19.61 Aligned_cols=65 Identities=11% Similarity=0.216 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhcCCC----CCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecc
Q 033144 4 KRILKELRDLQRDPP----TSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFKTK 72 (126)
Q Consensus 4 ~RL~~E~~~l~~~~~----~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 72 (126)
+..-+|.+.+..... .|+.+. +.+.=...+.+..|.-.|=.= .-.+++.| .||-..||+|.|+.+
T Consensus 8 akFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~~~-~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 8 AKFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPRSI-GLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCcccc-ceEEEEec-cccCcCCCceEEecc
Confidence 335567776654431 344433 444445555555455555221 24556666 789999999999876
No 77
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=21.62 E-value=1.5e+02 Score=22.54 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=20.2
Q ss_pred CCCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033144 46 AGGVFVVTIHFPPDYP------------------FKPPKVAFK 70 (126)
Q Consensus 46 ~gg~f~~~i~fp~~YP------------------~~pP~v~f~ 70 (126)
+.|.|.|+=..|--|| ..||.|.|.
T Consensus 150 ~~G~y~F~Ti~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 192 (247)
T cd03462 150 EDGRYEVRTTVPVPYQIPNDGPTGALLEAMGGHSWRPAHVHFK 192 (247)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 3577999999998885 478888885
No 78
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=21.06 E-value=1.7e+02 Score=22.52 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=26.0
Q ss_pred CCCCCCCEEEEEEeCCCCCCCCC--CeEEEec
Q 033144 42 DSPYAGGVFVVTIHFPPDYPFKP--PKVAFKT 71 (126)
Q Consensus 42 ~tpy~gg~f~~~i~fp~~YP~~p--P~v~f~t 71 (126)
.+.+.|..|++.+..|.+||-.. |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 45677889999999999999988 9999875
No 79
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=20.52 E-value=72 Score=22.92 Aligned_cols=24 Identities=29% Similarity=0.703 Sum_probs=15.7
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeEEEe
Q 033144 47 GGVFVVTIHFPPDYP------------------FKPPKVAFK 70 (126)
Q Consensus 47 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 70 (126)
.|.|.|+=..|--|| ..||.|.|.
T Consensus 83 ~G~y~f~Ti~Pg~Y~~~~dG~~g~ll~~~g~~~~Rp~HIH~~ 124 (183)
T PF00775_consen 83 DGRYSFRTIKPGPYPIPDDGPVGFLLRALGRHPWRPAHIHFK 124 (183)
T ss_dssp TSEEEEEEE----EEESTTSHHHHHHHHTTTTEEE-SEEEEE
T ss_pred CCEEEEEeeCCCCCCCCCccHHHHHHhhhccCCCcCCeEEEE
Confidence 478999999999988 578998885
No 80
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=20.38 E-value=63 Score=22.36 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=40.4
Q ss_pred HHHHHhhcCCCCCeEEeecCCCCceEEEEEECCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEe---cccccccccCCCcE
Q 033144 8 KELRDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFVVTIHFPPDYPFKPPKVAFK---TKVFHPNINSNGNI 84 (126)
Q Consensus 8 ~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~---t~i~HPnV~~~G~i 84 (126)
+++++.+..-+.|+.+.-..++ +.+ .|- .+.-. ..--.+||.+-+. +.--|+.+..+|.+
T Consensus 4 ~~fr~am~~~~~gV~vVT~~~~------------~~~-~g~--tvss~--~svS~~PP~v~v~l~~~s~t~~~i~~s~~F 66 (156)
T TIGR03615 4 QAFRDAMSRLGAAVNIITTDGP------------AGR-AGF--TASAV--CSVTDTPPTLLVCLNRSASAYPAFKQNGTL 66 (156)
T ss_pred HHHHHHHhccCCCeEEEEeecC------------CCc-eeE--EEEeE--eeccCCCCEEEEEeCCCcchhHHHHhCCeE
Confidence 5778888777788765533211 111 111 11111 1234579998875 33568899999999
Q ss_pred EccCCC
Q 033144 85 CLDILK 90 (126)
Q Consensus 85 cl~~l~ 90 (126)
++++|.
T Consensus 67 ~VnvL~ 72 (156)
T TIGR03615 67 CVNTLA 72 (156)
T ss_pred EEEECc
Confidence 999995
No 81
>PF08872 KGK: KGK domain; InterPro: IPR014971 This protein is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.
Probab=20.29 E-value=2e+02 Score=19.10 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCCCCCEEEE--EEeC
Q 033144 33 WQATIIGPNDSPYAGGVFVV--TIHF 56 (126)
Q Consensus 33 w~~~i~gp~~tpy~gg~f~~--~i~f 56 (126)
..|.|..+...-|..|.+++ .++|
T Consensus 67 i~CeiL~~g~~~W~kGK~ri~~~leF 92 (114)
T PF08872_consen 67 IECEILRFGSKGWQKGKVRIKVSLEF 92 (114)
T ss_pred eeEEEeccCCCCCccceEEEEEEEEE
Confidence 46667777777899999999 8888
No 82
>PF05709 Sipho_tail: Phage tail protein; InterPro: IPR008841 This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 4DIV_X 2X8K_C.
Probab=20.05 E-value=3.4e+02 Score=19.37 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEECC---CCCCCCCCEEEEEEeCCCCCCCC
Q 033144 4 KRILKELRDLQRDPPTSCSAGPVAEDMFHWQATIIGP---NDSPYAGGVFVVTIHFPPDYPFK 63 (126)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp---~~tpy~gg~f~~~i~fp~~YP~~ 63 (126)
.++.+++.++.... ....+...++.-..|.+.+.+. +.. ...+.+.+.+..|+=|-++
T Consensus 55 ~~~~~~l~~~l~~~-~~~~l~f~d~p~~~y~~~~~~~~~~~~~-~~~~~~ti~f~c~dPy~y~ 115 (249)
T PF05709_consen 55 EQKRRELASWLNPK-EPVKLIFDDDPDKYYYAKVSGSPDPDEG-NNSGTFTITFTCPDPYAYS 115 (249)
T ss_dssp HHHHHHHHHHH--S-S-EEEEETTSTT-EEEEEEEEEEE--SS-SSCEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhCcC-CCEEEEEECCCCEEEEEEECCccccccc-ceeEEEEEEEEECCceeee
Confidence 45677777776433 3366776777677888888763 222 2334566666664444444
Done!