BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033146
(126 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|388511713|gb|AFK43918.1| unknown [Lotus japonicus]
Length = 141
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 83/108 (76%), Gaps = 6/108 (5%)
Query: 1 MALRAAVAAPRGLRRLFST------SPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETL 54
MA+RAAVAAPRGLRRLF T SPF+ + P R EPSTNLFVSGL+KRTT E L
Sbjct: 1 MAMRAAVAAPRGLRRLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKL 60
Query: 55 RDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
R+ F+ FGEVVHA++V R SGYSKGFGFVKYAT+E A K I+GMDGK
Sbjct: 61 REEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGK 108
>gi|356517261|ref|XP_003527307.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 145
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/113 (65%), Positives = 83/113 (73%), Gaps = 11/113 (9%)
Query: 1 MALRAAVAAPRGLRRLFSTS------PFSSSLNP-----PQRPQAEPSTNLFVSGLSKRT 49
MA RAAVAAPR LRR F T+ PF S+L P P RP AEP+TNLFVSGLSKRT
Sbjct: 1 MATRAAVAAPRVLRRFFCTNSASSSFPFVSTLPPGATPAPTRPTAEPNTNLFVSGLSKRT 60
Query: 50 TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
E LR+ F+ FGEVVHA++V R SGYSKGFGFV+YAT+E A K IEGMDGK
Sbjct: 61 NTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIEGMDGK 113
>gi|255580168|ref|XP_002530915.1| RNA binding protein, putative [Ricinus communis]
gi|223529509|gb|EEF31464.1| RNA binding protein, putative [Ricinus communis]
Length = 354
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/102 (65%), Positives = 73/102 (71%), Gaps = 9/102 (8%)
Query: 10 PRGLRRLFST-------SPFSSSLN--PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSA 60
PRGL RLFST S FSS N P R QAEP+TNLFVSGLSKRTT E L+ FS
Sbjct: 15 PRGLLRLFSTTTTPSDLSIFSSQANTAPSAREQAEPNTNLFVSGLSKRTTTEGLKQAFSK 74
Query: 61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
FGEVV A++V R SGYSKGFGFV+Y +LE A K IEGMDGK
Sbjct: 75 FGEVVQARVVTDRVSGYSKGFGFVRYGSLEDAEKGIEGMDGK 116
>gi|15239676|ref|NP_200269.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|9758950|dbj|BAB09337.1| unnamed protein product [Arabidopsis thaliana]
gi|18175762|gb|AAL59923.1| unknown protein [Arabidopsis thaliana]
gi|20465513|gb|AAM20239.1| unknown protein [Arabidopsis thaliana]
gi|21553374|gb|AAM62467.1| unknown [Arabidopsis thaliana]
gi|332009129|gb|AED96512.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 156
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 74/108 (68%), Gaps = 7/108 (6%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQ-------RPQAEPSTNLFVSGLSKRTTDETL 54
A+ +AP GLRRLF ++ S PQ RPQAEPSTNLFVSGLSKRTT E L
Sbjct: 13 AVTEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGL 72
Query: 55 RDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
R F+ FGEV AK+V R SGYSKGFGFV+YATLE + K I GMDGK
Sbjct: 73 RTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGK 120
>gi|297792921|ref|XP_002864345.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297310180|gb|EFH40604.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 156
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/109 (61%), Positives = 75/109 (68%), Gaps = 9/109 (8%)
Query: 2 ALRAAVAAPRGLRRLFST--------SPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDET 53
A+ +AP GLRRLF + SP + S P RPQAEPSTNLFVSGLSKRTT E
Sbjct: 13 AVTEVASAPVGLRRLFCSNASRFSFLSPQAESQTP-ARPQAEPSTNLFVSGLSKRTTSEG 71
Query: 54 LRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
LR F+ FGEV AK+V R SGYSKGFGFV+YATLE + K I GMDGK
Sbjct: 72 LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGK 120
>gi|388512901|gb|AFK44512.1| unknown [Medicago truncatula]
Length = 144
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 72/101 (71%), Gaps = 8/101 (7%)
Query: 10 PRGLRRLFSTSPFSSSLNPPQ--------RPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
PR RLF T+P +SS P R AEPSTNLFVSGLSKRTT ETLR+ F F
Sbjct: 15 PRSFCRLFCTNPIASSPAFPSFSSSPPSARQMAEPSTNLFVSGLSKRTTTETLREAFQKF 74
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
GEVVHA++V R SGYSKGFGFVKYATLE A K IEGMDGK
Sbjct: 75 GEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGMDGK 115
>gi|215697937|dbj|BAG92098.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 111
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 77/106 (72%)
Query: 3 LRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFG 62
+ AA A G RR+FS S FS P P+A+PS NLF+SGLSKRTT + L++ F+ FG
Sbjct: 1 MAAAATARSGFRRMFSISAFSPPKPPTPPPKADPSPNLFISGLSKRTTTDGLKEAFAKFG 60
Query: 63 EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMA 108
EV+HA++V R +G+SKGFGFV+YAT+E A K IEGMDGKV ++
Sbjct: 61 EVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGMDGKVCFILS 106
>gi|449468518|ref|XP_004151968.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
gi|449496932|ref|XP_004160266.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
Length = 174
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/94 (65%), Positives = 70/94 (74%), Gaps = 6/94 (6%)
Query: 15 RLFSTSPFSSSLNPP------QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAK 68
RLFS++ SS + PP QR AEPSTNLFVSGLSKRTT E L + F+ FGEV HA+
Sbjct: 50 RLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHAR 109
Query: 69 IVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
+V R +GYSKGFGFVKYATLE A K IEGMDGK
Sbjct: 110 VVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGK 143
>gi|115474735|ref|NP_001060964.1| Os08g0139000 [Oryza sativa Japonica Group]
gi|38636774|dbj|BAD03017.1| putative RNA recognition motif (RRM)-containing protein [Oryza
sativa Japonica Group]
gi|113622933|dbj|BAF22878.1| Os08g0139000 [Oryza sativa Japonica Group]
gi|215767574|dbj|BAG99802.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222639884|gb|EEE68016.1| hypothetical protein OsJ_25986 [Oryza sativa Japonica Group]
Length = 141
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 74/100 (74%)
Query: 3 LRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFG 62
+ AA A G RR+FS S FS P P+A+PS NLF+SGLSKRTT + L++ F+ FG
Sbjct: 1 MAAAATARSGFRRMFSISAFSPPKPPTPPPKADPSPNLFISGLSKRTTTDGLKEAFAKFG 60
Query: 63 EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
EV+HA++V R +G+SKGFGFV+YAT+E A K IEGMDGK
Sbjct: 61 EVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGMDGK 100
>gi|218200448|gb|EEC82875.1| hypothetical protein OsI_27755 [Oryza sativa Indica Group]
Length = 141
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 74/100 (74%)
Query: 3 LRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFG 62
+ AA A G RR+FS S FS P P+A+PS NLF+SGLSKRTT + L++ F+ FG
Sbjct: 1 MAAAATARSGFRRMFSISAFSPPKPPTPPPKADPSPNLFISGLSKRTTTDGLKEAFAKFG 60
Query: 63 EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
EV+HA++V R +G+SKGFGF++YAT+E A K IEGMDGK
Sbjct: 61 EVIHARVVTDRVTGFSKGFGFIRYATVEDAAKGIEGMDGK 100
>gi|356543191|ref|XP_003540046.1| PREDICTED: nucleolin-like [Glycine max]
Length = 145
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 78/113 (69%), Gaps = 11/113 (9%)
Query: 1 MALRAAVAAPRGLRRLFSTSPFSSSL-----------NPPQRPQAEPSTNLFVSGLSKRT 49
MA RAAVAAPR RR F T+ S S P RP AEP+ NLFVSGLSKRT
Sbjct: 1 MATRAAVAAPRVFRRFFCTNSASPSFPFVPTPPPGATPTPTRPTAEPNPNLFVSGLSKRT 60
Query: 50 TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
T E LR+ F+ FGEVVHA++V R SGYSKGFGFV+YAT+E A K IEGMDGK
Sbjct: 61 TTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEEAAKGIEGMDGK 113
>gi|242080503|ref|XP_002445020.1| hypothetical protein SORBIDRAFT_07g002960 [Sorghum bicolor]
gi|241941370|gb|EES14515.1| hypothetical protein SORBIDRAFT_07g002960 [Sorghum bicolor]
Length = 140
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 73/98 (74%)
Query: 5 AAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEV 64
AA A G RR+FS S F+ P RPQA+PS NLFVSGLSKRTT E LRD F+ FGEV
Sbjct: 2 AAAVARSGFRRMFSVSAFAPPKAPAPRPQADPSPNLFVSGLSKRTTTEGLRDAFAKFGEV 61
Query: 65 VHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
VHA++V R SG+SKGFGFV+YAT E A K IEGMDGK
Sbjct: 62 VHARVVTDRVSGFSKGFGFVRYATTEEATKGIEGMDGK 99
>gi|346469013|gb|AEO34351.1| hypothetical protein [Amblyomma maculatum]
Length = 139
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 74/100 (74%)
Query: 3 LRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFG 62
+ AA A G RR+FS S F+ +P A+P+TNLFVSGLSKRTT E LR+ F+ FG
Sbjct: 1 MAAASVARNGFRRMFSISAFAPPPPAVPKPPADPNTNLFVSGLSKRTTTEGLREAFAKFG 60
Query: 63 EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
EVVHA++V R SGYSKGFGFVKYATLE A + I+GMDGK
Sbjct: 61 EVVHARVVTDRVSGYSKGFGFVKYATLEDAAEGIKGMDGK 100
>gi|224115158|ref|XP_002316957.1| predicted protein [Populus trichocarpa]
gi|222860022|gb|EEE97569.1| predicted protein [Populus trichocarpa]
Length = 153
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 63/80 (78%)
Query: 23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
++ P R QAEP+TNLFVSGLSKRTT E L++ FS FGEVV A++V R SGYSKGFG
Sbjct: 40 QTTQQTPAREQAEPNTNLFVSGLSKRTTSEGLQEAFSKFGEVVQARVVTDRVSGYSKGFG 99
Query: 83 FVKYATLEAAGKAIEGMDGK 102
FVKYATLE A + I+GMDG+
Sbjct: 100 FVKYATLEDAAEGIKGMDGQ 119
>gi|224124176|ref|XP_002319264.1| predicted protein [Populus trichocarpa]
gi|118487492|gb|ABK95573.1| unknown [Populus trichocarpa]
gi|222857640|gb|EEE95187.1| predicted protein [Populus trichocarpa]
Length = 149
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Query: 21 PF-SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSK 79
PF ++ P R QAEP+TNLFVSGLSKRTT E L++ FS FGEVV AK+V R SGYSK
Sbjct: 36 PFPQTTQQTPAREQAEPNTNLFVSGLSKRTTTEGLQEAFSKFGEVVQAKVVTDRTSGYSK 95
Query: 80 GFGFVKYATLEAAGKAIEGMDGK 102
GFGFV+Y TLE A + I+GMDG+
Sbjct: 96 GFGFVRYGTLEDAAEGIKGMDGQ 118
>gi|225461185|ref|XP_002283144.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|147854770|emb|CAN78606.1| hypothetical protein VITISV_024164 [Vitis vinifera]
gi|302143178|emb|CBI20473.3| unnamed protein product [Vitis vinifera]
Length = 135
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 68/96 (70%), Gaps = 3/96 (3%)
Query: 10 PRGLRRLFSTSPFSSSLNPPQRPQA---EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH 66
PR LRRLFSTS F P EPSTNLFVSGLSKRTT E L + FS FG+VV+
Sbjct: 10 PRSLRRLFSTSTFIPPPITAATPATPPAEPSTNLFVSGLSKRTTSEGLHEAFSKFGQVVN 69
Query: 67 AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
A++V R SGYSKGFGFV+Y +LE A + I+GMDGK
Sbjct: 70 ARVVTDRVSGYSKGFGFVRYVSLEDAAEGIKGMDGK 105
>gi|226496497|ref|NP_001150207.1| LOC100283837 [Zea mays]
gi|195621336|gb|ACG32498.1| nucleolin [Zea mays]
gi|195637560|gb|ACG38248.1| nucleolin [Zea mays]
gi|223948323|gb|ACN28245.1| unknown [Zea mays]
gi|413917478|gb|AFW57410.1| nucleolin [Zea mays]
Length = 140
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 72/98 (73%)
Query: 5 AAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEV 64
AA A G RR+FS S F+ P RP+A+PS NLFVSGLSKRTT E LR+ F+ FGEV
Sbjct: 2 AAAVARSGFRRMFSVSAFAPPKAPAARPKADPSPNLFVSGLSKRTTSEGLREAFAEFGEV 61
Query: 65 VHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
+HA++V R SG+SKGFGFV+YAT E A K IEG DGK
Sbjct: 62 LHARVVTDRVSGFSKGFGFVRYATTEEAAKGIEGKDGK 99
>gi|388493798|gb|AFK34965.1| unknown [Medicago truncatula]
Length = 185
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 69/105 (65%), Gaps = 7/105 (6%)
Query: 5 AAVAAPRGLRRLFSTSPFSSSLNPPQR-------PQAEPSTNLFVSGLSKRTTDETLRDT 57
AAVAAPRG R F T P +SS P AEP+ +FV+GL+KRTT ETLR+
Sbjct: 4 AAVAAPRGFCRFFCTKPTASSPTVPLSSGVTSALKTAEPNEIVFVTGLNKRTTSETLREA 63
Query: 58 FSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
F FGEV ++V R SGYSKGFG+V+YAT E A K I+GMDGK
Sbjct: 64 FKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGMDGK 108
>gi|326514928|dbj|BAJ99825.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326517426|dbj|BAK00080.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 153
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 74/111 (66%), Gaps = 13/111 (11%)
Query: 5 AAVAAPRGLRRLFST-------------SPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTD 51
AAVAA GLRR+FS S FS P P+A+PS NLFVSGLSKRTT
Sbjct: 2 AAVAARSGLRRMFSIADFPTPNTRMFSISAFSPPNPPTPPPKADPSPNLFVSGLSKRTTT 61
Query: 52 ETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
+ LR+ F+ FGEV HA+++ R +G+SKGFGFV+Y T+E A K IEGMDG+
Sbjct: 62 DGLREAFAKFGEVEHARVITDRVTGFSKGFGFVRYVTVEDAAKGIEGMDGE 112
>gi|357144628|ref|XP_003573359.1| PREDICTED: nucleolin-like [Brachypodium distachyon]
Length = 153
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 74/111 (66%), Gaps = 13/111 (11%)
Query: 5 AAVAAPRGLR-------------RLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTD 51
AA A GLR RLFS S F+ P P+A+PS NLFVSGLSKRTT
Sbjct: 2 AAAVARSGLRRMFAISDVAATSSRLFSISAFTPPSPPTPPPKADPSPNLFVSGLSKRTTT 61
Query: 52 ETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
+ LR+ F+ FGEV+HA++V R +G+SKGFGFV+YA++E A K IEGMDGK
Sbjct: 62 DGLREAFAKFGEVMHARVVTDRVTGFSKGFGFVRYASVEDASKGIEGMDGK 112
>gi|115472673|ref|NP_001059935.1| Os07g0549800 [Oryza sativa Japonica Group]
gi|28564803|dbj|BAC57733.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|113611471|dbj|BAF21849.1| Os07g0549800 [Oryza sativa Japonica Group]
gi|125600644|gb|EAZ40220.1| hypothetical protein OsJ_24665 [Oryza sativa Japonica Group]
gi|215767980|dbj|BAH00209.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 133
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 69/91 (75%)
Query: 12 GLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVK 71
G RR+FS S F+ P RP A+P NLFVSGL+KRTT + LR+ FS FG+V+ A+++
Sbjct: 9 GFRRMFSVSGFTPPPPPAARPLADPCNNLFVSGLNKRTTSDGLREAFSKFGQVIEARVIT 68
Query: 72 HRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
R SGYS+GFGFVKYAT+E AG+ I+GMDGK
Sbjct: 69 DRISGYSRGFGFVKYATVEEAGEGIKGMDGK 99
>gi|125558733|gb|EAZ04269.1| hypothetical protein OsI_26412 [Oryza sativa Indica Group]
Length = 133
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 69/91 (75%)
Query: 12 GLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVK 71
G RR+FS S F+ P RP A+P NLFVSGL+KRTT + LR+ FS FG+V+ A+++
Sbjct: 9 GFRRMFSVSGFTPPPPPAARPVADPCNNLFVSGLNKRTTSDGLREAFSKFGQVIEARVIT 68
Query: 72 HRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
R SGYS+GFGFVKYAT+E AG+ I+GMDGK
Sbjct: 69 DRISGYSRGFGFVKYATVEEAGEGIKGMDGK 99
>gi|225440312|ref|XP_002263021.1| PREDICTED: glycine-rich RNA-binding protein blt801 [Vitis vinifera]
gi|297740398|emb|CBI30580.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 69/104 (66%), Gaps = 7/104 (6%)
Query: 1 MALRAAVAAPRGLRRLFSTSPFSSSLNPPQ--RPQAEPSTNLFVSGLSKRTTDETLRDTF 58
MA RA + L+R FSTS FSS +P PST LF+SGL+KRTT E L +
Sbjct: 1 MATRAGL-----LKRFFSTSMFSSQTTAAANAKPAPIPSTTLFISGLNKRTTSEKLNEEA 55
Query: 59 SAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
S FGEVVHA++V R SGYSKGFGFVKYAT+ A + I+G+D +
Sbjct: 56 SKFGEVVHARVVTDRSSGYSKGFGFVKYATIAQAEQGIKGLDAQ 99
>gi|357122488|ref|XP_003562947.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like
[Brachypodium distachyon]
Length = 138
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 67/90 (74%)
Query: 13 LRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
RR+FS S FS P RP AEP NLFVSGL+KRTT + LR+ FS FG+V A+++
Sbjct: 15 FRRMFSVSAFSPPPPPAARPAAEPCNNLFVSGLNKRTTTDGLREAFSKFGQVTEARVITD 74
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
R SGYS+GFGFVKYAT+E AG+ I+GMDGK
Sbjct: 75 RISGYSRGFGFVKYATVEEAGEGIKGMDGK 104
>gi|242045928|ref|XP_002460835.1| hypothetical protein SORBIDRAFT_02g035890 [Sorghum bicolor]
gi|241924212|gb|EER97356.1| hypothetical protein SORBIDRAFT_02g035890 [Sorghum bicolor]
Length = 131
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 70/91 (76%)
Query: 12 GLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVK 71
G RRLFS S F++ P RP AEP NLFVSGL+KRTT L++ FS FG+V+ A+++
Sbjct: 10 GFRRLFSVSAFAAPPPPAARPAAEPCNNLFVSGLNKRTTSNGLKEAFSKFGQVIEARVIT 69
Query: 72 HRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
R SGYS+GFGFVKYAT++ AG+AI+GMDGK
Sbjct: 70 DRISGYSRGFGFVKYATVQEAGEAIKGMDGK 100
>gi|226500552|ref|NP_001148723.1| ELAV-like protein 4 [Zea mays]
gi|195621654|gb|ACG32657.1| ELAV-like protein 4 [Zea mays]
Length = 127
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 68/87 (78%)
Query: 16 LFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRES 75
LFS S F++ P RP A+P NLFVSGL+KRTT E L++ FS FG+V+ A+++ R S
Sbjct: 12 LFSVSAFAAPPPPAARPAADPCNNLFVSGLNKRTTSEGLKEAFSKFGQVIEARVITDRIS 71
Query: 76 GYSKGFGFVKYATLEAAGKAIEGMDGK 102
GYS+GFGFVKYAT++ AG+AIEGMDGK
Sbjct: 72 GYSRGFGFVKYATVQEAGEAIEGMDGK 98
>gi|226509825|ref|NP_001150518.1| ELAV-like protein 4 [Zea mays]
gi|195639828|gb|ACG39382.1| ELAV-like protein 4 [Zea mays]
gi|414590519|tpg|DAA41090.1| TPA: ELAV-like protein 4 [Zea mays]
Length = 129
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%)
Query: 16 LFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRES 75
LFS S F++ P RP A P NLFVSGL+KRTT E L++ FS FG+V+ A+++ R S
Sbjct: 12 LFSVSAFAAPPPPAARPAANPCNNLFVSGLNKRTTSEGLKEAFSKFGQVIEARVITDRIS 71
Query: 76 GYSKGFGFVKYATLEAAGKAIEGMDGK 102
GYS+GFGFVKYAT++ AG+AI+GMDGK
Sbjct: 72 GYSRGFGFVKYATVQEAGEAIKGMDGK 98
>gi|326527061|dbj|BAK04472.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 139
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 66/90 (73%)
Query: 13 LRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
RR+FS S F+ P RP AEP NLFVSGL+KRTT + LR+ FS FG+V A+++
Sbjct: 15 FRRMFSVSAFAPPPPPTARPAAEPCNNLFVSGLNKRTTSDGLREAFSKFGQVTDARVITD 74
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
R SGYS+GFGFVKYAT+E A + I+GMDGK
Sbjct: 75 RISGYSRGFGFVKYATVEEAAEGIKGMDGK 104
>gi|116792076|gb|ABK26221.1| unknown [Picea sitchensis]
Length = 151
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 66/111 (59%), Gaps = 9/111 (8%)
Query: 1 MALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQA---------EPSTNLFVSGLSKRTTD 51
MALR + R L + PF +S +P A +PS LFVSGLSKRTTD
Sbjct: 1 MALRRVFGSTTLGRFLLAKDPFIASRSPALNNSAVRGMSTEPADPSPKLFVSGLSKRTTD 60
Query: 52 ETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
E LR+ FS FG V+ A++V + +G SKGF FV+YAT E A K EGMDGK
Sbjct: 61 EGLREAFSKFGRVLEARVVTDKMNGVSKGFAFVRYATQEEADKGKEGMDGK 111
>gi|224286824|gb|ACN41115.1| unknown [Picea sitchensis]
Length = 149
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Query: 14 RRLFSTSPFSSSLNPPQRPQA--EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVK 71
R L + PF + + P A + +T LF+SGLS++TTDE LR FS FG++V A++V
Sbjct: 18 RLLLAKDPFCAVRSSPIGLGAVRDFTTKLFISGLSRQTTDEGLRAKFSEFGQLVEARVVT 77
Query: 72 HRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
R SG S+GFGFV+YATLE A K EGMDGK
Sbjct: 78 DRISGRSRGFGFVRYATLEDAAKGKEGMDGK 108
>gi|225439737|ref|XP_002274178.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|297741476|emb|CBI32608.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 16/108 (14%)
Query: 13 LRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
L+ FS + F+S++ P+ LFVSGLS+ TTDE L++ FS FG+++ AK++
Sbjct: 18 LQSQFSPARFNSTVTSPK---------LFVSGLSRLTTDEKLKEAFSPFGQLLEAKVITD 68
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARIINP 120
R SG SKGFGFV Y TLE A KA EGM+ K FL ++P
Sbjct: 69 RVSGRSKGFGFVTYTTLEEAEKAREGMNAK-------FLDGWVIFVDP 109
>gi|255581040|ref|XP_002531336.1| RNA binding protein, putative [Ricinus communis]
gi|223529058|gb|EEF31043.1| RNA binding protein, putative [Ricinus communis]
Length = 144
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 60/99 (60%), Gaps = 16/99 (16%)
Query: 22 FSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
F S+L P+ LFVSGLS+ TTDE L++ FS FG++V AK++ R SG SKGF
Sbjct: 29 FHSTLTCPR---------LFVSGLSRLTTDEKLKEAFSPFGQLVDAKVIIDRASGRSKGF 79
Query: 82 GFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARIINP 120
GF+ YAT+E A KA EGM+ K FL ++P
Sbjct: 80 GFITYATIEEAEKAREGMNAK-------FLDGWVIFVDP 111
>gi|246771225|gb|ACS94937.1| putative glycine-rich RNA-binding protein [Tamarix hispida]
Length = 143
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 18 STSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
+++P S LN + S+ LFV GLS T D++L+D FS+FGEV AK++ RE+G
Sbjct: 18 NSAPIDSMLNSIR---CMSSSRLFVGGLSWGTDDQSLKDAFSSFGEVTDAKVITDRETGR 74
Query: 78 SKGFGFVKYATLEAAGKAIEGMDG 101
S+GFGFV + EAAG A+ MDG
Sbjct: 75 SRGFGFVNFVDNEAAGSALSSMDG 98
>gi|1009363|dbj|BAA11089.1| RGP-3 [Nicotiana sylvestris]
Length = 144
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 57/85 (67%), Gaps = 4/85 (4%)
Query: 18 STSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
+TSP S L+ + ST LFV GLS T D++LRD F+ FG+VV A+++ R+SG
Sbjct: 22 ATSPMKSMLDAVR----CMSTKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGR 77
Query: 78 SKGFGFVKYATLEAAGKAIEGMDGK 102
S+GFGFV ++ E A +AI+ MDG+
Sbjct: 78 SRGFGFVNFSDDECANEAIKAMDGQ 102
>gi|449448655|ref|XP_004142081.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 146
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 16/108 (14%)
Query: 13 LRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
LR ++ SS+L P+ LF+SGLS+ TTDE LR+ FS+FG++V AK+V
Sbjct: 24 LRSQWNAVRLSSTLTSPK---------LFISGLSRLTTDEKLREAFSSFGQLVDAKVVTD 74
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARIINP 120
R +G SKGF FV Y+T++ A KA E M+ K FL ++P
Sbjct: 75 RATGRSKGFAFVTYSTIDEAEKAREEMNAK-------FLDGWVIFVDP 115
>gi|399931797|gb|AFP57448.1| RNA-binding glycine-rich protein [Nicotiana clevelandii]
Length = 144
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV GLS T D++LRD F+ FG+VV A+++ R+SG S+GFGFV ++ E+A +AI
Sbjct: 37 STKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESANEAI 96
Query: 97 EGMDGK 102
+ MDG+
Sbjct: 97 KAMDGQ 102
>gi|399931799|gb|AFP57449.1| RNA-binding glycine-rich protein [Nicotiana glauca]
Length = 144
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV GLS T D++LRD F+ FG+VV A+++ R+SG S+GFGFV ++ E+A +AI
Sbjct: 37 STKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESANEAI 96
Query: 97 EGMDGK 102
+ MDG+
Sbjct: 97 KAMDGQ 102
>gi|2366750|dbj|BAA22083.1| RNA binding protein [Nicotiana sylvestris]
gi|295393569|gb|ADG03640.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
gi|399931789|gb|AFP57444.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
gi|399931793|gb|AFP57446.1| RNA-binding glycine-rich protein [Nicotiana acuminata]
gi|399931795|gb|AFP57447.1| RNA-binding glycine-rich protein [Nicotiana alata]
gi|399931809|gb|AFP57454.1| RNA-binding glycine-rich protein [Nicotiana sylvestris]
Length = 144
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 57/85 (67%), Gaps = 4/85 (4%)
Query: 18 STSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
+TSP S L+ + ST LFV GLS T D++LRD F+ FG+VV A+++ R+SG
Sbjct: 22 ATSPMPSMLDAVR----CMSTKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGR 77
Query: 78 SKGFGFVKYATLEAAGKAIEGMDGK 102
S+GFGFV ++ E A +AI+ MDG+
Sbjct: 78 SRGFGFVNFSDDECANEAIKAMDGQ 102
>gi|399931805|gb|AFP57452.1| RNA-binding glycine-rich protein [Nicotiana repanda]
Length = 144
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 18 STSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
+TSP S L+ + ST LFV GLS T D++LRD F+ FG+VV A+++ R+SG
Sbjct: 22 ATSPMPSMLDAVR----CMSTKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGR 77
Query: 78 SKGFGFVKYATLEAAGKAIEGMDGK 102
S+GFGFV ++ E+A +AI+ MDG+
Sbjct: 78 SRGFGFVNFSDDESANEAIKAMDGQ 102
>gi|399931807|gb|AFP57453.1| RNA-binding glycine-rich protein [Nicotiana rustica]
Length = 144
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV GLS T D++LRD F+ FG+VV A+++ R+SG S+GFGFV ++ E+A +AI
Sbjct: 37 STKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESANEAI 96
Query: 97 EGMDGK 102
+ MDG+
Sbjct: 97 KAMDGQ 102
>gi|399931811|gb|AFP57455.1| RNA-binding glycine-rich protein [Nicotiana undulata]
Length = 144
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV GLS T D++LRD F+ FG+VV A+++ R+SG S+GFGFV ++ E+A +AI
Sbjct: 37 STKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESANEAI 96
Query: 97 EGMDGK 102
+ MDG+
Sbjct: 97 KAMDGQ 102
>gi|226532482|ref|NP_001150574.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195640298|gb|ACG39617.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 253
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 55/85 (64%)
Query: 19 TSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYS 78
TS SS+++ Q + S+ LFV GLS T D +LRD F+ +G+V+ AKI+ RESG S
Sbjct: 15 TSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRS 74
Query: 79 KGFGFVKYATLEAAGKAIEGMDGKV 103
+GFGF+ Y + E A AI MDGK
Sbjct: 75 RGFGFITYTSSEEASAAITAMDGKT 99
>gi|255633638|gb|ACU17178.1| unknown [Glycine max]
Length = 196
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
PST LF+ G+S T +++LR+ FS +GEVV A+I+ RE+G S+GFGF+ Y ++E A A
Sbjct: 40 PSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSA 99
Query: 96 IEGMDGK 102
I+ +DG+
Sbjct: 100 IQALDGQ 106
>gi|351724829|ref|NP_001237071.1| uncharacterized protein LOC100306326 [Glycine max]
gi|255628209|gb|ACU14449.1| unknown [Glycine max]
Length = 139
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 8/110 (7%)
Query: 12 GLRRLFSTSPFSSSLNPPQRPQAE-PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
G++RL +P S R + S LFVSGL + T DE L++ FS+FG++V AK++
Sbjct: 6 GVQRLLRRTPLVHSHYASIRLSSTLTSPKLFVSGLCRLTIDEKLKEAFSSFGQLVEAKVI 65
Query: 71 KHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARIINP 120
R SG SKGF FV Y T+E A KA EGM+ K FL ++P
Sbjct: 66 IDRASGRSKGFAFVTYTTIEEAEKAREGMNAK-------FLDGWVIFVDP 108
>gi|218184292|gb|EEC66719.1| hypothetical protein OsI_33054 [Oryza sativa Indica Group]
Length = 117
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
Q + S+ LF+ G+S T D++L++ F+ +GEV+ A+++ R +G S+GFGFV Y +
Sbjct: 23 QAVRCMSSSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTST 82
Query: 90 EAAGKAIEGMDGKVSLCMASFLHALARIINPFPIF 124
+ A AI GMDGKV C A+F+ ++ N + F
Sbjct: 83 DEAAAAITGMDGKV--CCANFVISIGLQFNFYLRF 115
>gi|356505124|ref|XP_003521342.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 139
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 8/110 (7%)
Query: 12 GLRRLFSTSPFSSSLNPPQRPQAE-PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
G +RL +P S R + S LFVSGLS+ T DE L++ FS+FG++V AK++
Sbjct: 6 GAQRLLRHTPLVHSHYASIRLSSTLTSPKLFVSGLSRLTKDENLKEAFSSFGQLVEAKVI 65
Query: 71 KHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARIINP 120
R SG SKGF FV Y T+E A +A EGM+ K FL ++P
Sbjct: 66 TDRASGRSKGFAFVTYTTIEEAERAREGMNAK-------FLDGWVIFVDP 108
>gi|297827259|ref|XP_002881512.1| hypothetical protein ARALYDRAFT_902894 [Arabidopsis lyrata subsp.
lyrata]
gi|297327351|gb|EFH57771.1| hypothetical protein ARALYDRAFT_902894 [Arabidopsis lyrata subsp.
lyrata]
Length = 142
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 62/94 (65%), Gaps = 6/94 (6%)
Query: 13 LRRLFSTSPFSSSLNPP----QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAK 68
RRL + S +S L+ P +R S LFVSGLS+ TT+E L+D F++FG++V A+
Sbjct: 7 FRRLVAGS--NSLLSSPSFCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDAR 64
Query: 69 IVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
++ RE+G SKGFGFV YAT+E A KA M+ K
Sbjct: 65 VITDRETGRSKGFGFVTYATIEDAEKAKAEMNAK 98
>gi|115488680|ref|NP_001066827.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|77555842|gb|ABA98638.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113649334|dbj|BAF29846.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|125579440|gb|EAZ20586.1| hypothetical protein OsJ_36195 [Oryza sativa Japonica Group]
gi|215694288|dbj|BAG89281.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708787|dbj|BAG94056.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 258
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 5/90 (5%)
Query: 13 LRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
L+R S+SP Q + S+ LFV GLS T +++LRDTF+ +G+V+ AKI+
Sbjct: 11 LKRATSSSPA-----LYQSIRCMSSSKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIIND 65
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
RE+G S+GFGF+ YA+ E A AI +DGK
Sbjct: 66 RETGRSRGFGFITYASSEEASAAITALDGK 95
>gi|449439247|ref|XP_004137398.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like-B-like
[Cucumis sativus]
Length = 170
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
PST L++SGLS RTT+E+LR+ F +FG++V +V R + +GF F++YA+ E + KA
Sbjct: 87 PSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKA 146
Query: 96 IEGMDGKVSLC 106
IEGM GK C
Sbjct: 147 IEGMHGKGDFC 157
>gi|387861093|gb|AFK08576.1| glycine-rich RNA binding protein 2a [Camelina sativa]
gi|387861099|gb|AFK08579.1| glycine-rich RNA binding protein 2a [Camelina sativa]
Length = 160
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 47/66 (71%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV GLS T D++LRD F+ FGEVV AK++ RE+G S+GFGFV ++ AA AI
Sbjct: 35 STKLFVGGLSWGTDDQSLRDAFAHFGEVVDAKVIVDRETGRSRGFGFVNFSDETAASAAI 94
Query: 97 EGMDGK 102
MDGK
Sbjct: 95 SEMDGK 100
>gi|351725889|ref|NP_001237108.1| uncharacterized protein LOC100305561 [Glycine max]
gi|255625921|gb|ACU13305.1| unknown [Glycine max]
Length = 180
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 48/67 (71%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
P T L+VSGLS RTT+E+LR+ F FG++V K+V R + +GF F++YAT E + KA
Sbjct: 86 PQTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKA 145
Query: 96 IEGMDGK 102
IEGM GK
Sbjct: 146 IEGMHGK 152
>gi|351725255|ref|NP_001236574.1| uncharacterized protein LOC100527220 [Glycine max]
gi|255631812|gb|ACU16273.1| unknown [Glycine max]
Length = 138
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 18 STSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
+ +P SS LN + S+ LF+ GLS D++L+D FS FG+VV AK++ R+SG
Sbjct: 19 TQAPVSSMLNYIR---CMSSSKLFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGR 75
Query: 78 SKGFGFVKYATLEAAGKAIEGMDGK 102
S+GFGFV ++ E+A A+ MDGK
Sbjct: 76 SRGFGFVNFSNDESASSALSAMDGK 100
>gi|125536731|gb|EAY83219.1| hypothetical protein OsI_38428 [Oryza sativa Indica Group]
Length = 257
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 5/90 (5%)
Query: 13 LRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
L+R S+SP Q + S+ LFV GLS T +++LRDTF+ +G+V+ AKI+
Sbjct: 11 LKRATSSSPA-----LYQSIRCMSSSKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIIND 65
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
RE+G S+GFGF+ YA+ E A AI +DGK
Sbjct: 66 RETGRSRGFGFITYASSEEASAAITALDGK 95
>gi|225464267|ref|XP_002271224.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|296088019|emb|CBI35302.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 10 PRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKI 69
PR LF+ + SS N P + P T L+VSGLS RTT+E+LR+ F FG++V +
Sbjct: 55 PRNGNDLFAVACLPSSPNQP----SIPKTRLYVSGLSFRTTEESLRNAFETFGQLVEVNL 110
Query: 70 VKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
V + + +GF F++Y+T E + KAIEGM GK
Sbjct: 111 VMDKIANRPRGFAFLRYSTEEESEKAIEGMHGK 143
>gi|15224298|ref|NP_181287.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20197470|gb|AAM15089.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|21536972|gb|AAM61313.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|114050677|gb|ABI49488.1| At2g37510 [Arabidopsis thaliana]
gi|330254316|gb|AEC09410.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 142
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 52/73 (71%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
+R S LFVSGLS+ TT+E L+D F++FG++V A+++ R+SG SKGFGFV YAT+
Sbjct: 26 RRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATI 85
Query: 90 EAAGKAIEGMDGK 102
E A KA M+ K
Sbjct: 86 EDAEKAKAEMNAK 98
>gi|226529880|ref|NP_001150360.1| RNA binding protein [Zea mays]
gi|195638638|gb|ACG38787.1| RNA binding protein [Zea mays]
gi|414866145|tpg|DAA44702.1| TPA: RNA binding protein [Zea mays]
Length = 166
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 7/82 (8%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NLFVSGLS+ TTDE L+ F+ FG ++ AK+V R SG SKGFGFV+YAT+E A +A +
Sbjct: 61 NLFVSGLSRLTTDEKLQGAFAPFGRLLEAKVVTDRVSGRSKGFGFVRYATIEEAERARQE 120
Query: 99 MDGKVSLCMASFLHALARIINP 120
M+ K FL ++P
Sbjct: 121 MNAK-------FLDGWVIFVDP 135
>gi|363543257|ref|NP_001241843.1| uncharacterized protein LOC100857047 [Zea mays]
gi|238007748|gb|ACR34909.1| unknown [Zea mays]
gi|413916459|gb|AFW56391.1| putative glycine-rich protein [Zea mays]
Length = 261
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%)
Query: 23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
SS+++ Q + S+ LFV GLS T D +LRD F+ +G+V+ AKI+ RESG S+GFG
Sbjct: 16 SSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFG 75
Query: 83 FVKYATLEAAGKAIEGMDGKV 103
F+ Y + E A AI MDGK
Sbjct: 76 FITYTSSEEASAAITAMDGKT 96
>gi|399931801|gb|AFP57450.1| RNA-binding glycine-rich protein [Nicotiana goodspeedii]
Length = 144
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 49/66 (74%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV GLS T D++LRD + FG+VV A+++ R+SG S+GFGFV ++ E+A +AI
Sbjct: 37 STKLFVGGLSWGTDDQSLRDALATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESANEAI 96
Query: 97 EGMDGK 102
+ MDG+
Sbjct: 97 KAMDGQ 102
>gi|399931803|gb|AFP57451.1| RNA-binding glycine-rich protein [Nicotiana plumbaginifolia]
Length = 144
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
Query: 18 STSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
+TSP S L+ + ST LFV GLS T D++LRD F+ FG+VV A+++ R+SG
Sbjct: 22 ATSPMPSMLDAVR----CMSTKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGR 77
Query: 78 SKGFGFVKYATLEAAGKAIEGMDGK 102
+GFGFV ++ E A +AI+ MDG+
Sbjct: 78 PRGFGFVNFSDDECANEAIKAMDGQ 102
>gi|15219486|ref|NP_177494.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|11120799|gb|AAG30979.1|AC012396_15 RNA-binding glycine-rich protein, putative [Arabidopsis thaliana]
gi|62867629|gb|AAY17418.1| At1g73530 [Arabidopsis thaliana]
gi|114050615|gb|ABI49457.1| At1g73530 [Arabidopsis thaliana]
gi|332197351|gb|AEE35472.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 181
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
P T L+VSGLS RTT++TLRDTF FG ++H +V + + KGF F++Y T E A KA
Sbjct: 75 PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA 134
Query: 96 IEGMDGK 102
I+GM GK
Sbjct: 135 IQGMHGK 141
>gi|297804934|ref|XP_002870351.1| hypothetical protein ARALYDRAFT_493528 [Arabidopsis lyrata subsp.
lyrata]
gi|297316187|gb|EFH46610.1| hypothetical protein ARALYDRAFT_493528 [Arabidopsis lyrata subsp.
lyrata]
Length = 154
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV GLS T D++LRD F+ FGEVV AK++ RE+G S+GFGFV + AA AI
Sbjct: 34 STKLFVGGLSWGTDDQSLRDAFAHFGEVVDAKVIVDRETGRSRGFGFVNFNDEGAASAAI 93
Query: 97 EGMDGK 102
MDGK
Sbjct: 94 SEMDGK 99
>gi|388519245|gb|AFK47684.1| unknown [Lotus japonicus]
Length = 138
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 7/81 (8%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+SGLS++TTD L + F+ FG+++ AK++ R SG SKGFGFV YA++E A KA +GM
Sbjct: 33 LFISGLSRQTTDRKLNEAFAPFGQLIEAKVITDRASGRSKGFGFVSYASIEEAEKAGKGM 92
Query: 100 DGKVSLCMASFLHALARIINP 120
+ K FL ++P
Sbjct: 93 NAK-------FLDGWVIFVDP 106
>gi|242036137|ref|XP_002465463.1| hypothetical protein SORBIDRAFT_01g039290 [Sorghum bicolor]
gi|241919317|gb|EER92461.1| hypothetical protein SORBIDRAFT_01g039290 [Sorghum bicolor]
Length = 169
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
LFVSGLS+ TTDE L+ F+ FG ++ AK+V R SG SKGFGFV+YAT+E A KA +
Sbjct: 64 KLFVSGLSRLTTDEKLQGAFAPFGRILEAKVVTDRVSGRSKGFGFVRYATIEEAEKARQE 123
Query: 99 MDGKVSLCMASFLHALARIINP 120
M+ K FL ++P
Sbjct: 124 MNAK-------FLDGWVIFVDP 138
>gi|357510439|ref|XP_003625508.1| RNA binding protein [Medicago truncatula]
gi|355500523|gb|AES81726.1| RNA binding protein [Medicago truncatula]
Length = 141
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 63/112 (56%), Gaps = 10/112 (8%)
Query: 12 GLRRLF--STSPFSSSLNPPQRPQAE-PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAK 68
G RL S SP SS R + S LF+SGLS+ TTDE L + FS FG+++ AK
Sbjct: 6 GFHRLLRHSQSPLVSSHFTSIRLNSTLTSPKLFISGLSRLTTDEKLTEAFSPFGQLLEAK 65
Query: 69 IVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARIINP 120
++ R SG SKGF FV Y+T+E A KA EGM+ K FL ++P
Sbjct: 66 VITDRGSGRSKGFAFVSYSTIEEAEKAREGMNAK-------FLDGWVIFVDP 110
>gi|125543335|gb|EAY89474.1| hypothetical protein OsI_11005 [Oryza sativa Indica Group]
Length = 173
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 7/81 (8%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+SGLS+ TTDE L++ F+ FG+++ AK++ R SG SKGFGFV+YATLE A A + M
Sbjct: 69 LFISGLSRLTTDEKLKNAFAPFGQLLEAKVITDRISGRSKGFGFVRYATLEEAENARQEM 128
Query: 100 DGKVSLCMASFLHALARIINP 120
+ K FL ++P
Sbjct: 129 NAK-------FLDGWVIFVDP 142
>gi|302762278|ref|XP_002964561.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
gi|302814304|ref|XP_002988836.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300143407|gb|EFJ10098.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300168290|gb|EFJ34894.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
Length = 149
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 48/67 (71%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LF+ GL+ T + LRD FS FGE++ ++++ RE+G S+GFGFV Y T + A KA+
Sbjct: 36 SSKLFIGGLAWGTEERGLRDAFSPFGEIIEVRVIQDRETGRSRGFGFVSYITDQEAQKAM 95
Query: 97 EGMDGKV 103
E MDG+V
Sbjct: 96 EAMDGRV 102
>gi|387861095|gb|AFK08577.1| glycine-rich RNA binding protein 2b [Camelina sativa]
gi|387861101|gb|AFK08580.1| glycine-rich RNA binding protein 2b [Camelina sativa]
Length = 156
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV GLS T D +LRD F+ FGEVV AK++ RE+G S+GFGFV ++ AA AI
Sbjct: 35 STKLFVGGLSWGTDDASLRDAFAHFGEVVDAKVIVDRETGRSRGFGFVNFSDETAASAAI 94
Query: 97 EGMDGK 102
MDGK
Sbjct: 95 SEMDGK 100
>gi|115452257|ref|NP_001049729.1| Os03g0278800 [Oryza sativa Japonica Group]
gi|108707493|gb|ABF95288.1| RNA-binding protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113548200|dbj|BAF11643.1| Os03g0278800 [Oryza sativa Japonica Group]
gi|125543333|gb|EAY89472.1| hypothetical protein OsI_11004 [Oryza sativa Indica Group]
gi|125585797|gb|EAZ26461.1| hypothetical protein OsJ_10350 [Oryza sativa Japonica Group]
Length = 173
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 7/81 (8%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+SGLS+ TTDE L++ F+ FG+++ AK++ R SG SKGFGFV+YATLE A A + M
Sbjct: 69 LFISGLSRLTTDEKLKNAFAPFGQLLEAKVITDRISGRSKGFGFVRYATLEEAENARQEM 128
Query: 100 DGKVSLCMASFLHALARIINP 120
+ K FL ++P
Sbjct: 129 NAK-------FLDGWVIFVDP 142
>gi|356511826|ref|XP_003524623.1| PREDICTED: uncharacterized protein LOC100782808 [Glycine max]
Length = 274
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
PST LF+ G+S T +++LR+ FS +GEVV A+I+ RE+G S+GFGF+ Y ++E A A
Sbjct: 40 PSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSA 99
Query: 96 IEGMDGK 102
I+ +DG+
Sbjct: 100 IQALDGQ 106
>gi|118487563|gb|ABK95608.1| unknown [Populus trichocarpa]
Length = 133
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LF+ GL T D+TL+D FS FGEV A+++ RE+G S+GFGFV Y ++E A +A+
Sbjct: 35 SSKLFIGGLPWSTDDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEAL 94
Query: 97 EGMDGK 102
MDG+
Sbjct: 95 SAMDGQ 100
>gi|359806697|ref|NP_001241034.1| uncharacterized protein LOC100799124 [Glycine max]
gi|255645259|gb|ACU23127.1| unknown [Glycine max]
Length = 275
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
PST LF+ G+S T +++LR+ FS +GEVV A+I+ RE+G S+GFGF+ Y ++E A A
Sbjct: 40 PSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSA 99
Query: 96 IEGMDGK 102
I+ +DG+
Sbjct: 100 IQALDGQ 106
>gi|242055377|ref|XP_002456834.1| hypothetical protein SORBIDRAFT_03g043760 [Sorghum bicolor]
gi|241928809|gb|EES01954.1| hypothetical protein SORBIDRAFT_03g043760 [Sorghum bicolor]
Length = 147
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV GLS D LR+ FS FG+V A+++ R++G S+GFGFV Y + +AA AI
Sbjct: 36 STKLFVGGLSWGVDDMKLREAFSGFGDVTEARVITDRDTGKSRGFGFVNYTSSDAANAAI 95
Query: 97 EGMDGK 102
GMDGK
Sbjct: 96 SGMDGK 101
>gi|116783558|gb|ABK22994.1| unknown [Picea sitchensis]
Length = 157
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 49/66 (74%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ +FV GLS D+TLR++F+ FG+V+ AKI+ RE+G S+GFGFV +A+ + A A+
Sbjct: 38 SSKVFVGGLSYGVDDQTLRESFATFGDVMEAKIINDRETGRSRGFGFVTFASPDEANAAV 97
Query: 97 EGMDGK 102
E MDGK
Sbjct: 98 EAMDGK 103
>gi|351723185|ref|NP_001236758.1| uncharacterized protein LOC100499841 [Glycine max]
gi|255627057|gb|ACU13873.1| unknown [Glycine max]
Length = 143
Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 47/67 (70%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S+ LF+ GLS D++L+D FS FG+VV AK++ R+SG S+GFGFV ++ E+A A
Sbjct: 34 SSSKLFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSA 93
Query: 96 IEGMDGK 102
+ MDGK
Sbjct: 94 LSAMDGK 100
>gi|255563618|ref|XP_002522811.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223538049|gb|EEF39662.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 134
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
Query: 21 PFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKG 80
P SS LN + S+ LF+ GLS T D++L+D FS FG+VV A+++ R++G S+G
Sbjct: 22 PVSSMLNSIR---CMSSSKLFIGGLSYGTNDDSLKDAFSGFGDVVTARVITDRDTGRSRG 78
Query: 81 FGFVKYATLEAAGKAIEGMDGK 102
FGFV ++++++A A+ MDG+
Sbjct: 79 FGFVDFSSVDSASSALSAMDGQ 100
>gi|242083506|ref|XP_002442178.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
gi|241942871|gb|EES16016.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
Length = 250
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 46/67 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV GLS T D +LRD F+ +GEV+ A+I+ RESG S+GFGFV Y + E A AI
Sbjct: 29 SSKLFVGGLSYGTDDHSLRDEFAKYGEVIEARIILDRESGRSRGFGFVTYTSSEEASAAI 88
Query: 97 EGMDGKV 103
MDGK
Sbjct: 89 TAMDGKT 95
>gi|326490373|dbj|BAJ84850.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 299
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 47/66 (71%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ +FV G+S T D++L D FS +G+V AK++ RESG S+GFGFV + + E AG AI
Sbjct: 30 SSKVFVGGISYGTDDQSLGDAFSNYGQVTEAKVIMDRESGRSRGFGFVTFTSSEEAGAAI 89
Query: 97 EGMDGK 102
GMDGK
Sbjct: 90 TGMDGK 95
>gi|224128992|ref|XP_002328863.1| predicted protein [Populus trichocarpa]
gi|118482403|gb|ABK93124.1| unknown [Populus trichocarpa]
gi|222839293|gb|EEE77630.1| predicted protein [Populus trichocarpa]
Length = 131
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 48/66 (72%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LF+ GL+ T D++L+D FS FGEV A+++ R++G S+GFGFV Y + E+A +A+
Sbjct: 35 SSKLFIGGLAWSTDDQSLKDAFSGFGEVTEARVITDRDTGRSRGFGFVSYESTESASEAL 94
Query: 97 EGMDGK 102
MDG+
Sbjct: 95 SAMDGQ 100
>gi|357457429|ref|XP_003598995.1| 28 kDa ribonucleoprotein [Medicago truncatula]
gi|355488043|gb|AES69246.1| 28 kDa ribonucleoprotein [Medicago truncatula]
Length = 447
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 35/69 (50%), Positives = 50/69 (72%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+ P+T LFV G+S T +++L D FS +G+V+ A+I+ RESG SKGFGFV Y T+E A
Sbjct: 40 STPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEAS 99
Query: 94 KAIEGMDGK 102
AI+ +DG+
Sbjct: 100 SAIQALDGQ 108
>gi|115441831|ref|NP_001045195.1| Os01g0916600 [Oryza sativa Japonica Group]
gi|2624328|emb|CAA05729.1| OsGRP2 [Oryza sativa Japonica Group]
gi|19386753|dbj|BAB86134.1| OsGRP2 [Oryza sativa Japonica Group]
gi|20805007|dbj|BAB92683.1| OsGRP2 [Oryza sativa Japonica Group]
gi|113534726|dbj|BAF07109.1| Os01g0916600 [Oryza sativa Japonica Group]
gi|125528847|gb|EAY76961.1| hypothetical protein OsI_04919 [Oryza sativa Indica Group]
gi|125573102|gb|EAZ14617.1| hypothetical protein OsJ_04542 [Oryza sativa Japonica Group]
gi|215765299|dbj|BAG86996.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768370|dbj|BAH00599.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 150
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 48/66 (72%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV GLS T D++L++ F++FG+V A+++ RESG S+GFGFV +A + A A+
Sbjct: 36 STKLFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAM 95
Query: 97 EGMDGK 102
+ MDGK
Sbjct: 96 DAMDGK 101
>gi|146328793|ref|YP_001209360.1| RNA recognition motif-containing protein [Dichelobacter nodosus
VCS1703A]
gi|146232263|gb|ABQ13241.1| RNA recognition motif protein [Dichelobacter nodosus VCS1703A]
Length = 95
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V LS RTT++ LR+ FS FG+V +A I+K R+SG SKGFGFV+ EAA KAIE
Sbjct: 2 TNIYVGNLSYRTTEDELRNAFSQFGDVQNASIIKDRDSGRSKGFGFVEMPDAEAAKKAIE 61
Query: 98 GMDGK 102
++ K
Sbjct: 62 SLNDK 66
>gi|449507141|ref|XP_004162944.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like [Cucumis
sativus]
Length = 175
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
PST L++SGLS RTT+E+LR+ F +FG++V +V R + +GF F++YA+ E + KA
Sbjct: 87 PSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKA 146
Query: 96 IEGMDGK 102
IEGM GK
Sbjct: 147 IEGMHGK 153
>gi|356568734|ref|XP_003552565.1| PREDICTED: uncharacterized protein LOC100807155 [Glycine max]
Length = 244
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LFV G+S T D +LR++F+ +GEV+ K++ RE+G S+GFGFV +AT E A AI
Sbjct: 39 SAKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAI 98
Query: 97 EGMDGK 102
+GMDG+
Sbjct: 99 QGMDGQ 104
>gi|255645506|gb|ACU23248.1| unknown [Glycine max]
Length = 243
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LFV G+S T D +LR++F+ +GEV+ K++ RE+G S+GFGFV +AT E A AI
Sbjct: 39 SAKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAI 98
Query: 97 EGMDGK 102
+GMDG+
Sbjct: 99 QGMDGQ 104
>gi|357112848|ref|XP_003558218.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 168
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 7/81 (8%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFVSGLS+ TTDE L++ F FG+V+ AK++ R SG SKGFGFV+Y +L+ A A +GM
Sbjct: 64 LFVSGLSRLTTDEKLKNAFIPFGQVLEAKVITDRISGRSKGFGFVRYVSLQEAEAARQGM 123
Query: 100 DGKVSLCMASFLHALARIINP 120
+ K FL ++P
Sbjct: 124 NAK-------FLDGWVIFVDP 137
>gi|118474079|ref|YP_892397.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|424821065|ref|ZP_18246103.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|118413305|gb|ABK81725.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|342327844|gb|EGU24328.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 82
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 47/64 (73%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++V LS R T+ LR+ FS+FGEV AKIVK +E+ SKGFGFV+ ++ E A KAIEG
Sbjct: 3 NIYVGNLSYRMTESELREVFSSFGEVTRAKIVKDKETNRSKGFGFVEMSSDEQAKKAIEG 62
Query: 99 MDGK 102
+GK
Sbjct: 63 TNGK 66
>gi|328767903|gb|EGF77951.1| hypothetical protein BATDEDRAFT_27077 [Batrachochytrium
dendrobatidis JAM81]
Length = 106
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 52/73 (71%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
+RP+A P T +FV LS T + +L D FS FGEVV + ++K RE+G S+GFGFV +++
Sbjct: 3 RRPEAAPGTKVFVGNLSWGTDNNSLADAFSQFGEVVDSIVLKDRETGRSRGFGFVTFSSP 62
Query: 90 EAAGKAIEGMDGK 102
E+A A++ M+G+
Sbjct: 63 ESASAAVDAMNGQ 75
>gi|223973531|gb|ACN30953.1| unknown [Zea mays]
Length = 184
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LF+ GL D LR+ FS+FGEV A+++ RE+G S+GFGFV Y+ +AA +AI
Sbjct: 36 STKLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAI 95
Query: 97 EGMDGK 102
MDGK
Sbjct: 96 SAMDGK 101
>gi|399931791|gb|AFP57445.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 144
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 18 STSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
+TSP S L+ + ST LFV GLS T D++LRD F+ FG+VV A ++ +SG
Sbjct: 22 ATSPMPSMLDAVRCM----STKLFVGGLSWGTDDQSLRDAFATFGDVVDAGVIVDGDSGR 77
Query: 78 SKGFGFVKYATLEAAGKAIEGMDGK 102
S+GFGFV ++ E A +AI+ MDG+
Sbjct: 78 SRGFGFVNFSDDECANEAIKAMDGQ 102
>gi|387861097|gb|AFK08578.1| glycine-rich RNA binding protein 2c [Camelina sativa]
gi|387861103|gb|AFK08581.1| glycine-rich RNA binding protein 2c [Camelina sativa]
Length = 158
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV GLS T D +LRD F+ FGEVV AK++ RE+G +GFGFV ++ AA AI
Sbjct: 35 STKLFVGGLSWGTDDASLRDAFAHFGEVVDAKVIVDRETGRPRGFGFVNFSDETAASAAI 94
Query: 97 EGMDGK 102
MDGK
Sbjct: 95 SEMDGK 100
>gi|187373099|gb|ACD03270.1| glycine-rich RNA-binding protein [Nicotiana tabacum]
Length = 157
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 47/69 (68%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ TTD+TL D FS +GE+V +KI+ RE+G S+GFGFV + +A
Sbjct: 2 AEVEYRCFVGGLAWATTDQTLGDAFSQYGEIVDSKIINDRETGRSRGFGFVTFKDEQAMR 61
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 62 DAIEGMNGQ 70
>gi|224060337|ref|XP_002300149.1| predicted protein [Populus trichocarpa]
gi|222847407|gb|EEE84954.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LF+ GL D+TL+D FS FGEV A+++ RE+G S+GFGFV Y ++E A +A+
Sbjct: 35 SSKLFIGGLPWSADDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEAL 94
Query: 97 EGMDGK 102
MDG+
Sbjct: 95 SAMDGQ 100
>gi|356526497|ref|XP_003531854.1| PREDICTED: uncharacterized protein LOC100818300 [Glycine max]
Length = 245
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 48/66 (72%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LFV G+S T D +LR++F+ +GEV+ K++ RE+G S+GFGF+ +AT E A AI
Sbjct: 39 SAKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFITFATSEDASSAI 98
Query: 97 EGMDGK 102
+GMDG+
Sbjct: 99 QGMDGQ 104
>gi|357119387|ref|XP_003561423.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 161
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 48/69 (69%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T D L+D FS+FGE++ +KI+ RE+G S+GFGFV +A+ ++
Sbjct: 2 AEVEYRCFVGGLAWATDDRGLQDAFSSFGEIIDSKIINDRETGRSRGFGFVTFASEQSMR 61
Query: 94 KAIEGMDGK 102
AIEGM+GK
Sbjct: 62 DAIEGMNGK 70
>gi|226506948|ref|NP_001149776.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195633803|gb|ACG36746.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 276
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 47/67 (70%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV G+S +T D +LRD F+ +G+V+ A+I+ RESG S+GFGFV Y + E A AI
Sbjct: 29 SSKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAI 88
Query: 97 EGMDGKV 103
+DGK
Sbjct: 89 TALDGKT 95
>gi|158516903|gb|ABW70168.1| putative glycine-rich RNA-binding protein 2 [Bambusa oldhamii]
Length = 162
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 48/66 (72%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV GLS T D++L+D F++FGEVV A+++ R++G S+GFGFV ++ + A A+
Sbjct: 36 STKLFVGGLSWGTDDQSLKDAFTSFGEVVEARVITDRDTGKSRGFGFVSFSNGDDAKNAM 95
Query: 97 EGMDGK 102
MDG+
Sbjct: 96 SSMDGQ 101
>gi|226505736|ref|NP_001150149.1| LOC100283778 [Zea mays]
gi|195605606|gb|ACG24633.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195606158|gb|ACG24909.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195637130|gb|ACG38033.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195645710|gb|ACG42323.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|238009788|gb|ACR35929.1| unknown [Zea mays]
gi|413951537|gb|AFW84186.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LF+ GL D LR+ FS+FGEV A+++ RE+G S+GFGFV Y+ +AA +AI
Sbjct: 36 STKLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAI 95
Query: 97 EGMDGK 102
MDGK
Sbjct: 96 SAMDGK 101
>gi|195642478|gb|ACG40707.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 153
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LF+ GL D LR+ FS+FGEV A+++ RE+G S+GFGFV Y+ +AA +AI
Sbjct: 36 STKLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAI 95
Query: 97 EGMDGK 102
MDGK
Sbjct: 96 SAMDGK 101
>gi|222612603|gb|EEE50735.1| hypothetical protein OsJ_31052 [Oryza sativa Japonica Group]
Length = 118
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 50/74 (67%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
Q + S+ LF+ G+S T D++L++ F+ +GEV+ A+++ R +G S+GFGFV Y +
Sbjct: 23 QAVRCMSSSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTST 82
Query: 90 EAAGKAIEGMDGKV 103
+ A AI GMDGKV
Sbjct: 83 DEAAAAITGMDGKV 96
>gi|297842099|ref|XP_002888931.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297334772|gb|EFH65190.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 181
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 47/65 (72%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T L+VSGLS RTT++TLRDTF FG+++H +V + + +GF F++Y T E A KAI+
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGKLIHMNLVMDKVANRPRGFAFLRYETEEEAMKAIQ 136
Query: 98 GMDGK 102
GM GK
Sbjct: 137 GMHGK 141
>gi|212275199|ref|NP_001130054.1| uncharacterized protein LOC100191146 [Zea mays]
gi|194688180|gb|ACF78174.1| unknown [Zea mays]
gi|414878270|tpg|DAA55401.1| TPA: glycine-rich RNA-binding protein 7 [Zea mays]
Length = 254
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 47/67 (70%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV G+S +T D +LRD F+ +G+V+ A+I+ RESG S+GFGFV Y + E A AI
Sbjct: 29 SSKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAI 88
Query: 97 EGMDGKV 103
+DGK
Sbjct: 89 TALDGKT 95
>gi|2226370|gb|AAC50020.1| RNA-binding protein [Nicotiana glutinosa]
Length = 156
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ TTD+TL D FS +GE++ +KI+ RE+G S+GFGFV + +A
Sbjct: 2 AEVEYRCFVGGLAWATTDQTLGDAFSQYGEILDSKIINDRETGRSRGFGFVTFKDEQAMR 61
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 62 DAIEGMNGQ 70
>gi|2826811|emb|CAA05727.1| AtGRP2 [Arabidopsis thaliana]
Length = 150
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LF+ GLS T D +LRD F+ FG+VV AK++ RE+G S+GFGFV + AA AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 97 EGMDGK 102
MDGK
Sbjct: 94 SEMDGK 99
>gi|195654321|gb|ACG46628.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|238010482|gb|ACR36276.1| unknown [Zea mays]
Length = 252
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 47/67 (70%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV G+S +T D +LRD F+ +G+V+ A+I+ RESG S+GFGFV Y + E A AI
Sbjct: 29 SSKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAI 88
Query: 97 EGMDGKV 103
+DGK
Sbjct: 89 TALDGKT 95
>gi|30682622|ref|NP_849377.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|332657934|gb|AEE83334.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 153
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LF+ GLS T D +LRD F+ FG+VV AK++ RE+G S+GFGFV + AA AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 97 EGMDGK 102
MDGK
Sbjct: 94 SEMDGK 99
>gi|15236359|ref|NP_193121.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|25090505|sp|Q9SVM8.1|GRP2_ARATH RecName: Full=Glycine-rich RNA-binding protein 2, mitochondrial;
Short=AtGRP2; Flags: Precursor
gi|4455314|emb|CAB36849.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gi|7268089|emb|CAB78427.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gi|18252853|gb|AAL62353.1| glycine-rich RNA-binding protein AtGRP2 - like [Arabidopsis
thaliana]
gi|21553749|gb|AAM62842.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gi|25084267|gb|AAN72208.1| glycine-rich RNA-binding protein AtGRP2 - like [Arabidopsis
thaliana]
gi|332657933|gb|AEE83333.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 158
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LF+ GLS T D +LRD F+ FG+VV AK++ RE+G S+GFGFV + AA AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 97 EGMDGK 102
MDGK
Sbjct: 94 SEMDGK 99
>gi|145333039|ref|NP_001078385.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|332657935|gb|AEE83335.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 144
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LF+ GLS T D +LRD F+ FG+VV AK++ RE+G S+GFGFV + AA AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 97 EGMDGK 102
MDGK
Sbjct: 94 SEMDGK 99
>gi|145333041|ref|NP_001078386.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|332657936|gb|AEE83336.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 129
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LF+ GLS T D +LRD F+ FG+VV AK++ RE+G S+GFGFV + AA AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 97 EGMDGK 102
MDGK
Sbjct: 94 SEMDGK 99
>gi|357152879|ref|XP_003576265.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 165
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 45/62 (72%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D L+ FS FGE++ AKI++ RE+G S+GFGFV +AT E+ AIEGM+
Sbjct: 7 FVGGLAWATDDHNLQSAFSNFGEILDAKIIQDRETGRSRGFGFVTFATEESMQAAIEGMN 66
Query: 101 GK 102
GK
Sbjct: 67 GK 68
>gi|829254|emb|CAA49174.1| glycine-rich RNA-binding protein [Arabidopsis thaliana]
Length = 139
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LF+ GLS T D +LRD F+ FG+VV AK++ RE+G S+GFGFV + AA AI
Sbjct: 15 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 74
Query: 97 EGMDGK 102
MDGK
Sbjct: 75 SEMDGK 80
>gi|357126492|ref|XP_003564921.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 156
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 7 VAAPRGLRRLFSTSPFSSSLNPPQRPQAEP-----STNLFVSGLSKRTTDETLRDTFSAF 61
+AA L L S F+SS++ P S LFV GLS T D +L++ FS+F
Sbjct: 1 MAAFNKLGSLLRQSAFASSVSAGSAPAMFNAARFMSNKLFVGGLSWGTNDGSLKEAFSSF 60
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
GEV A+++ RE+G S+GFGFV+++ E A KA MDG+
Sbjct: 61 GEVYEARVITDRETGRSRGFGFVEFSNEEDAKKAASSMDGQ 101
>gi|116791319|gb|ABK25933.1| unknown [Picea sitchensis]
Length = 221
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S+ LF+ GLS D++LR++F+ +GEV+ A+I+ RE+G S+GFGF+ + + E A A
Sbjct: 38 SSSRLFIGGLSYGMDDQSLRESFTEYGEVIEARIIHDRETGRSRGFGFISFTSNEEAAAA 97
Query: 96 IEGMDGK 102
I GMDGK
Sbjct: 98 ITGMDGK 104
>gi|76160980|gb|ABA40453.1| RNA binding protein-like protein [Solanum tuberosum]
gi|76160996|gb|ABA40461.1| RNA binding protein-like protein [Solanum tuberosum]
Length = 150
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 49/66 (74%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV GLS T D++L++ F++FG+VV AK++ R+SG S+GFGFV ++ + A +A+
Sbjct: 38 SSRLFVGGLSWGTDDQSLKEAFTSFGDVVDAKVIIDRDSGRSRGFGFVNFSDEDCAKEAM 97
Query: 97 EGMDGK 102
MDG+
Sbjct: 98 NAMDGQ 103
>gi|115473215|ref|NP_001060206.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|113611742|dbj|BAF22120.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|222637411|gb|EEE67543.1| hypothetical protein OsJ_25023 [Oryza sativa Japonica Group]
Length = 238
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV GLS T D TL+D FS +G+V+ A+I+ R++G SKG+GF+ Y + E A A+
Sbjct: 30 SSKLFVGGLSYATDDTTLKDVFSHYGDVLEARIIIDRDTGKSKGYGFITYTSSEEAAAAV 89
Query: 97 EGMDGK 102
MDGK
Sbjct: 90 TAMDGK 95
>gi|1778374|gb|AAB71417.1| glycine-rich RNA-binding protein PsGRBP [Pisum sativum]
gi|206586422|gb|ACI15745.1| glycine-rich RNA-binding protein [Pisum sativum]
Length = 146
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 18 STSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
S +P SS LN + S+ LF+ GLS D++L+D F+++GEVV A+++ R++G
Sbjct: 19 SHAPVSSMLNYLRHM---SSSKLFIGGLSYGVDDQSLKDAFASYGEVVEARVITDRDTGR 75
Query: 78 SKGFGFVKYATLEAAGKAIEGMDGK 102
S+GFGFV + + E+A A+ MDG+
Sbjct: 76 SRGFGFVNFTSDESATSALSAMDGQ 100
>gi|111162637|gb|ABH07505.1| glycine-rich RNA-binding protein [Nicotiana attenuata]
Length = 152
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 46/69 (66%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ TTD+TL D FS FGE++ +KI+ RE+G S+GFGFV + +A
Sbjct: 2 AEVEYRCFVGGLAWATTDQTLGDAFSQFGEILDSKIINDRETGRSRGFGFVTFKDEKAMR 61
Query: 94 KAIEGMDGK 102
AIEGM G+
Sbjct: 62 DAIEGMKGQ 70
>gi|297733872|emb|CBI15119.3| unnamed protein product [Vitis vinifera]
Length = 163
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 19 TSPFSSSLNPP--QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESG 76
S FS S NP Q + S+ LF+ GLS T D +LR+ F +GEV+ A+++ RE+G
Sbjct: 20 NSQFSVS-NPSIYQAIRCMSSSKLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETG 78
Query: 77 YSKGFGFVKYATLEAAGKAIEGMDGK 102
S+GFGFV + + E A AI+ +DG+
Sbjct: 79 RSRGFGFVTFTSSEEASSAIQALDGQ 104
>gi|19881711|gb|AAM01112.1|AC098682_16 Putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 119
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
Q + S+ LF+ G+S T D++L++ F+ +GEV+ A+++ R +G S+GFGFV Y +
Sbjct: 23 QAVRCMSSSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTST 82
Query: 90 EAAGKAIEGMDGKVSLCMASFLHA 113
+ A AI GMDGK F HA
Sbjct: 83 DEAAAAITGMDGKTFPKTEPFGHA 106
>gi|388505224|gb|AFK40678.1| unknown [Lotus japonicus]
Length = 187
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T L+VSGLS RTT+E+LR+ F FG++V +V + + +GF F++YAT E + KAIE
Sbjct: 94 TRLYVSGLSFRTTEESLRNCFKNFGQLVDVNLVMDKLANRPRGFAFLRYATEEESQKAIE 153
Query: 98 GMDGK 102
GM GK
Sbjct: 154 GMHGK 158
>gi|147774036|emb|CAN71872.1| hypothetical protein VITISV_038162 [Vitis vinifera]
Length = 272
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 19 TSPFSSSLNPP--QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESG 76
S FS S NP Q + S+ LF+ GLS T D +LR+ F +GEV+ A+++ RE+G
Sbjct: 20 NSQFSVS-NPSIYQAIRCMSSSKLFIGGLSYSTDDTSLREAFYKYGEVIEARVIVDRETG 78
Query: 77 YSKGFGFVKYATLEAAGKAIEGMDGK 102
S+GFGFV + + E A AI+ +DG+
Sbjct: 79 RSRGFGFVTFTSSEEASSAIQALDGQ 104
>gi|469070|dbj|BAA03741.1| RNA-binding glycine-rich protein-1a [Nicotiana sylvestris]
gi|295393563|gb|ADG03637.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 156
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ TTD+TL + FS FGE++ +KI+ RE+G S+GFGFV + +A
Sbjct: 2 AEVEYRCFVGGLAWATTDQTLGEAFSQFGEILDSKIINDRETGRSRGFGFVTFKDEKAMR 61
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 62 DAIEGMNGQ 70
>gi|90704785|dbj|BAE92287.1| putative glycine-rich RNA binding protein [Cryptomeria japonica]
Length = 181
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GLS T D +L+D F+AFGEV+ +K+V RE+G S+GFGFV + ++
Sbjct: 4 ADVEFRCFVGGLSWSTDDRSLKDAFTAFGEVMDSKVVSDRETGRSRGFGFVTFMDEQSMR 63
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 64 DAIEGMNGR 72
>gi|326509231|dbj|BAJ91532.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510271|dbj|BAJ87352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 252
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 23 SSSLNPP--QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKG 80
++S NP Q + S+ LFV GLS T + +LRD FS +GE++ AKI+ R++G S+G
Sbjct: 14 ATSSNPTLYQAIRCMSSSKLFVGGLSYTTDEGSLRDAFSHYGEIIDAKIIVDRDTGRSRG 73
Query: 81 FGFVKYATLEAAGKAIEGMDGK 102
FGF+ YA E A AI +DGK
Sbjct: 74 FGFITYAAEEQASSAIMALDGK 95
>gi|82623423|gb|ABB87126.1| putative glycine-rich RNA binding protein-like [Solanum tuberosum]
Length = 178
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ TTD TL + FS +GEVV +KI+ RE+G S+GFGFV + +A AIEGM+
Sbjct: 9 FVGGLAWATTDNTLSEAFSQYGEVVESKIINDRETGRSRGFGFVTFKDEQAMRDAIEGMN 68
Query: 101 GK 102
G+
Sbjct: 69 GQ 70
>gi|15229525|ref|NP_189025.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|30687226|ref|NP_850629.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|9294652|dbj|BAB03001.1| glycine-rich RNA binding protein-like [Arabidopsis thaliana]
gi|17979516|gb|AAL50093.1| AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|20453303|gb|AAM19890.1| AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|332643298|gb|AEE76819.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|332643299|gb|AEE76820.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
Length = 136
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV GLS T D +L+ F++FGEV A ++ RE+G S+GFGFV ++ ++A AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 97 EGMDGK 102
+ MDGK
Sbjct: 94 KEMDGK 99
>gi|224110196|ref|XP_002315444.1| predicted protein [Populus trichocarpa]
gi|222864484|gb|EEF01615.1| predicted protein [Populus trichocarpa]
Length = 311
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Query: 24 SSLNPPQRPQAEPSTN-----LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYS 78
+S NPP +A T+ LF++GLS T+++TLR F FGE+V KI+ + S S
Sbjct: 200 NSANPPDSSEASQITHVRTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRS 259
Query: 79 KGFGFVKYATLEAAGKAIEGMDGKV 103
KG+ FVKY T EAA A++ M+GK+
Sbjct: 260 KGYAFVKYTTEEAASSALKEMNGKI 284
>gi|22725943|gb|AAN04953.1| Putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 147
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 44 GLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV 103
G+S T D++L++ F+ +GEV+ A+++ R +G S+GFGFV Y + + A AI GMDGKV
Sbjct: 67 GISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITGMDGKV 126
Query: 104 SLCMASFLHALARIIN 119
C A+F+ ++ N
Sbjct: 127 --CCANFVISIGLQFN 140
>gi|21553972|gb|AAM63053.1| glycine-rich RNA binding protein, putative [Arabidopsis thaliana]
Length = 136
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV GLS T D +L+ F++FGEV A ++ RE+G S+GFGFV ++ ++A AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 97 EGMDGK 102
+ MDGK
Sbjct: 94 KEMDGK 99
>gi|212276175|ref|NP_001130201.1| hypothetical protein [Zea mays]
gi|194688532|gb|ACF78350.1| unknown [Zea mays]
gi|414887483|tpg|DAA63497.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
gi|414887484|tpg|DAA63498.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
Length = 308
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 13 LRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
LRR + P S L P R + S+ LFV GLS T + TL+D FS FG V+ A+I+
Sbjct: 11 LRRTLA--PTCSPLLQPVRCMS--SSKLFVGGLSFATDETTLKDAFSEFGNVLEARIIID 66
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
RESG S+GFGF+ + + E A A+ MDGK
Sbjct: 67 RESGRSRGFGFITFTSTEEASAAMTSMDGK 96
>gi|9293999|dbj|BAB01902.1| unnamed protein product [Arabidopsis thaliana]
Length = 396
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 5/81 (6%)
Query: 25 SLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFV 84
S +PP + + LF++GLS T+++TLR F FGE+V KI+ + S SKG+ F+
Sbjct: 274 SESPPVK-----TKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFL 328
Query: 85 KYATLEAAGKAIEGMDGKVSL 105
+Y T EAAG A++ M+GKV+L
Sbjct: 329 EYTTEEAAGTALKEMNGKVNL 349
>gi|226491121|ref|NP_001143351.1| uncharacterized protein LOC100275970 [Zea mays]
gi|195618716|gb|ACG31188.1| hypothetical protein [Zea mays]
Length = 295
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 13 LRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
LRR + P S L P R + S+ LFV GLS T + TL+D FS FG V+ A+I+
Sbjct: 11 LRRTLA--PTCSPLLQPVRCMS--SSKLFVGGLSFATDETTLKDAFSEFGNVLEARIIID 66
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
RESG S+GFGF+ + + E A A+ MDGK
Sbjct: 67 RESGRSRGFGFITFTSTEEASAAMTSMDGK 96
>gi|421976742|gb|AFX73254.1| glycine rich RNA binding protein 1a [Solanum lycopersicum]
Length = 164
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE + FV GL+ TTD TL D FS +GEVV +KI+ RE+G S+GFGFV + ++
Sbjct: 3 AEVEYSCFVGGLAWATTDRTLSDAFSTYGEVVDSKIINDRETGRSRGFGFVTFKDEKSMK 62
Query: 94 KAIEGMDGK 102
AI GM+G+
Sbjct: 63 DAISGMNGQ 71
>gi|224077836|ref|XP_002305429.1| predicted protein [Populus trichocarpa]
gi|118481826|gb|ABK92850.1| unknown [Populus trichocarpa]
gi|222848393|gb|EEE85940.1| predicted protein [Populus trichocarpa]
Length = 165
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ TTD++L++ FS +GE++ +KI+ RE+G S+GFGFV + +A
Sbjct: 3 AEVEYRCFVGGLAWATTDQSLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFNNEKAMR 62
Query: 94 KAIEGMDGK 102
AI+GM+G+
Sbjct: 63 DAIDGMNGQ 71
>gi|357462751|ref|XP_003601657.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355490705|gb|AES71908.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 146
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 18 STSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
+ +P SS LN + S+ LF+ GLS D++LRD F+ +G+VV A+++ RE+G
Sbjct: 19 TQAPVSSMLNYLRHM---SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGR 75
Query: 78 SKGFGFVKYATLEAAGKAIEGMDGK 102
S+GFGFV + + E+A A+ MDG+
Sbjct: 76 SRGFGFVNFTSEESATSALS-MDGQ 99
>gi|21388662|dbj|BAC00787.1| glycine-rich RNA-binding protein [Physcomitrella patens]
Length = 155
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LFV GL+ TTD+ +++ FSAFGEV KI+ R++G S+GFGFV +AT + A A++
Sbjct: 42 SKLFVGGLAWGTTDDNIKEAFSAFGEVTEVKIICDRDTGRSRGFGFVTFATDQDAEAALQ 101
Query: 98 GMDGK 102
+DG+
Sbjct: 102 ALDGR 106
>gi|1934994|emb|CAA73034.1| SGRP-1 [Solanum commersonii]
Length = 162
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE + FV GL+ TTD TL D FS +GEVV +KI+ RE+G S+GFGFV + ++
Sbjct: 3 AEVEYSCFVGGLAWATTDRTLSDAFSTYGEVVDSKIINDRETGRSRGFGFVTFKDEKSMK 62
Query: 94 KAIEGMDG 101
+AI GM+G
Sbjct: 63 EAISGMNG 70
>gi|449477140|ref|XP_004154942.1| PREDICTED: uncharacterized LOC101218446 [Cucumis sativus]
Length = 287
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 48/67 (71%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S+ +FV G+S T D++LR+ F+ +GEV+ A+++ RE+G S+GFGFV Y + E A A
Sbjct: 41 ESSKVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSA 100
Query: 96 IEGMDGK 102
I+ +DG+
Sbjct: 101 IQALDGQ 107
>gi|224105391|ref|XP_002313795.1| predicted protein [Populus trichocarpa]
gi|222850203|gb|EEE87750.1| predicted protein [Populus trichocarpa]
Length = 128
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ TTD+ L++ FS +GE++ +KI+ RE+G S+GFGFV + +A
Sbjct: 2 AEVEYRCFVGGLAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFGNEKAMR 61
Query: 94 KAIEGMDGK 102
AI+GM+G+
Sbjct: 62 DAIDGMNGQ 70
>gi|449441097|ref|XP_004138320.1| PREDICTED: uncharacterized protein LOC101218446 [Cucumis sativus]
Length = 232
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 48/67 (71%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S+ +FV G+S T D++LR+ F+ +GEV+ A+++ RE+G S+GFGFV Y + E A A
Sbjct: 41 ESSKVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSA 100
Query: 96 IEGMDGK 102
I+ +DG+
Sbjct: 101 IQALDGQ 107
>gi|168016725|ref|XP_001760899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687908|gb|EDQ74288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 155
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LFV GL+ TTD+ +++ FSAFGEV KI+ R++G S+GFGFV +AT + A A++
Sbjct: 42 SKLFVGGLAWGTTDDNIKEAFSAFGEVTEVKIICDRDTGRSRGFGFVTFATDQDAEAALQ 101
Query: 98 GMDGK 102
+DG+
Sbjct: 102 ALDGR 106
>gi|154413444|ref|XP_001579752.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121913962|gb|EAY18766.1| hypothetical protein TVAG_267990 [Trichomonas vaginalis G3]
Length = 248
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 8/101 (7%)
Query: 4 RAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAE---PSTNLFVSGLSKRTTDETLRDTFSA 60
RAA PR F +P S +RP+++ PSTN+F++ + R T++ LR+ S
Sbjct: 16 RAAFRGPRPQSESFQRTPASG-----RRPRSQVITPSTNVFINYIPPRFTEQDLRNLCSQ 70
Query: 61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
+GE++ +KI+ + E+G SK FGFVK+ L A AI+ +DG
Sbjct: 71 YGEIISSKIMINLETGQSKCFGFVKFRELSQAHAAIQAIDG 111
>gi|225457213|ref|XP_002284026.1| PREDICTED: uncharacterized protein LOC100256940 [Vitis vinifera]
Length = 277
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 19 TSPFSSSLNPP--QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESG 76
S FS S NP Q + S+ LF+ GLS T D +LR+ F +GEV+ A+++ RE+G
Sbjct: 20 NSQFSVS-NPSIYQAIRCMSSSKLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETG 78
Query: 77 YSKGFGFVKYATLEAAGKAIEGMDGK 102
S+GFGFV + + E A AI+ +DG+
Sbjct: 79 RSRGFGFVTFTSSEEASSAIQALDGQ 104
>gi|118489085|gb|ABK96349.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 171
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ TTD+ L++ FS +GE++ +KI+ RE+G S+GFGFV + +A
Sbjct: 3 AEVEYRCFVGGLAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFGNEKAMR 62
Query: 94 KAIEGMDGK 102
AI+GM+G+
Sbjct: 63 DAIDGMNGQ 71
>gi|118481677|gb|ABK92779.1| unknown [Populus trichocarpa]
gi|118481702|gb|ABK92791.1| unknown [Populus trichocarpa]
gi|118482754|gb|ABK93295.1| unknown [Populus trichocarpa]
gi|118483202|gb|ABK93505.1| unknown [Populus trichocarpa]
Length = 170
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ TTD+ L++ FS +GE++ +KI+ RE+G S+GFGFV + +A
Sbjct: 3 AEVEYRCFVGGLAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFGNEKAMR 62
Query: 94 KAIEGMDGK 102
AI+GM+G+
Sbjct: 63 DAIDGMNGQ 71
>gi|296422065|ref|XP_002840583.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636802|emb|CAZ84774.1| unnamed protein product [Tuber melanosporum]
Length = 559
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 44/68 (64%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
E + NLFV LS + LR+ F FGE+ ++V RESG SKGFG+V+Y T EAA K
Sbjct: 299 EGAKNLFVGSLSWNVDEGWLRNEFEQFGEIAAVRVVTDRESGRSKGFGYVEYTTNEAAKK 358
Query: 95 AIEGMDGK 102
A+E M GK
Sbjct: 359 ALEEMKGK 366
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S +FV+ LS ++ ++ F FG +V +I ESG KGF +++Y +++A KA+
Sbjct: 401 SETVFVANLSFEADEQIVQTEFEGFGNIVGLRIPTDPESGQPKGFCYIQYDRVDSARKAV 460
Query: 97 EGMDG 101
E M+G
Sbjct: 461 EEMNG 465
>gi|242046266|ref|XP_002461004.1| hypothetical protein SORBIDRAFT_02g039025 [Sorghum bicolor]
gi|241924381|gb|EER97525.1| hypothetical protein SORBIDRAFT_02g039025 [Sorghum bicolor]
Length = 83
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 49/67 (73%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST +FVS LS TT+E +D FS+FG V A++++ +++G KGFGFVKY++ A KA+
Sbjct: 5 STEIFVSRLSFYTTEEEFKDVFSSFGTVEEARLMRDQQTGRIKGFGFVKYSSQAEAEKAV 64
Query: 97 EGMDGKV 103
+ MDG++
Sbjct: 65 KAMDGRI 71
>gi|90265701|dbj|BAE91897.1| glycine-rich RNA-binding protein [Lolium perenne]
Length = 107
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
FV GL+ T D++L FS FGE+ KI+ RE+G S+GFGFV +++ E+ AIEGM
Sbjct: 7 CFVGGLAWATNDQSLEQAFSQFGEITDCKIINDRETGRSRGFGFVTFSSSESMKNAIEGM 66
Query: 100 DGK 102
+G+
Sbjct: 67 NGQ 69
>gi|116780918|gb|ABK21879.1| unknown [Picea sitchensis]
Length = 172
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T D +L+D FS FGE++ +KI+ RE+G S+GFGFV ++ ++
Sbjct: 5 AEVEYRCFVGGLAWATDDRSLQDAFSPFGEILESKIISDRETGRSRGFGFVTFSDEQSMR 64
Query: 94 KAIEGMDGKV 103
AI+ M+GKV
Sbjct: 65 DAIDAMNGKV 74
>gi|116779573|gb|ABK21345.1| unknown [Picea sitchensis]
gi|224285462|gb|ACN40453.1| unknown [Picea sitchensis]
Length = 198
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 24 SSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
+ L PP R + + LFV+GLS TT+ TL++ FS +G+VV +I+ ++ + SKGFGF
Sbjct: 77 ACLPPPTRTR---NNKLFVTGLSIYTTERTLQNAFSNYGKVVDVRIIMNKTTRRSKGFGF 133
Query: 84 VKYATLEAAGKAIEGMDGKV 103
V+++T E A A++ M+GK+
Sbjct: 134 VEFSTEEEANTALKEMNGKI 153
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 27 NPPQRPQ------AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKG 80
NP +R Q ++PST LFV LS TT++ L F FG+V H ++ +ESG KG
Sbjct: 192 NPEKRAQVFGDSESQPSTTLFVGNLSWNTTEDGLWTAFGEFGDVTHVRLPTDQESGKPKG 251
Query: 81 FGFVKYATLEAAGKAIEGMDGK 102
FG+V++ E A KA E M GK
Sbjct: 252 FGYVEFGDQEGATKAYEAMKGK 273
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A S +FV LS ++ L F G VV A++ R SG S+GF +V++++ A
Sbjct: 105 EAGESNTVFVGRLSWNVDNDWLAQEFQGCGTVVAARVQMDRNSGKSRGFAYVEFSSPAEA 164
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 165 QKAVEEMNGK 174
>gi|326515712|dbj|BAK07102.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 104
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 49/69 (71%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T D++L++ FS +G+V+ +KI+ RE+G S+GFGFV +A+ EA
Sbjct: 2 ADVEYRCFVGGLAWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61
Query: 94 KAIEGMDGK 102
+AIE M+G+
Sbjct: 62 QAIEAMNGQ 70
>gi|326487468|dbj|BAJ89718.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510625|dbj|BAJ87529.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518508|dbj|BAJ88283.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520529|dbj|BAK07523.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527353|dbj|BAK04618.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 161
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 49/69 (71%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T D++L++ FS +G+V+ +KI+ RE+G S+GFGFV +A+ EA
Sbjct: 2 ADVEYRCFVGGLAWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61
Query: 94 KAIEGMDGK 102
+AIE M+G+
Sbjct: 62 QAIEAMNGQ 70
>gi|114145394|dbj|BAF30986.1| glycine-rich RNA-binding protein [Triticum aestivum]
Length = 163
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 49/69 (71%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T D++L++ FS +G+V+ +KI+ RE+G S+GFGFV +A+ EA
Sbjct: 2 ADVEYRCFVGGLAWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61
Query: 94 KAIEGMDGK 102
+AIE M+G+
Sbjct: 62 QAIEAMNGQ 70
>gi|224120444|ref|XP_002318331.1| predicted protein [Populus trichocarpa]
gi|222859004|gb|EEE96551.1| predicted protein [Populus trichocarpa]
Length = 181
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T L+VSGLS RTT+E+LR+ F FG++V +V + + +GF F++Y T E A KAIE
Sbjct: 90 TKLYVSGLSFRTTEESLRNAFQNFGQLVDVNLVMDKVAKRPRGFAFLRYETEEEAQKAIE 149
Query: 98 GMDGK 102
GM GK
Sbjct: 150 GMHGK 154
>gi|224121390|ref|XP_002318570.1| predicted protein [Populus trichocarpa]
gi|222859243|gb|EEE96790.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S+ LFV G+S +T D +L++ F +G VV A+I+ RE+G S+GFGFV Y + E A A
Sbjct: 38 SSSKLFVGGISFQTDDNSLKEAFDKYGNVVEARIIMDRETGRSRGFGFVTYTSSEEASSA 97
Query: 96 IEGMDGK 102
I+ +DG+
Sbjct: 98 IQALDGQ 104
>gi|356517068|ref|XP_003527212.1| PREDICTED: uncharacterized protein LOC100777821 [Glycine max]
Length = 182
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T + L FS FGE+V +K++ RE+G S+GFGFV +AT +A
Sbjct: 4 AEVEFRCFVGGLAWATDHDALEKAFSQFGEIVESKVINDRETGRSRGFGFVTFATEQAMR 63
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 64 DAIEGMNGQ 72
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L TD+ LRD FSA G + A+++K ++G S+GFGFV Y+T E A +A+
Sbjct: 295 VNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVN 354
Query: 98 GMDGKVSLCMASFLHALAR 116
M+GK+ L F+ ALA+
Sbjct: 355 EMNGKIILGKPIFV-ALAQ 372
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+FV L + ++ L DTFS FG ++ K+V + +G SKG+G+V Y T EAA AIE
Sbjct: 98 NIFVKNLHEGIDNKQLYDTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEK 157
Query: 99 MDG 101
+DG
Sbjct: 158 LDG 160
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
RP TN+F+ + T++ LR+ F FGEVV A K +E S GFGFV +AT E
Sbjct: 179 RPGQADWTNVFIKNIPFEWTEDKLREEFEGFGEVVSA---KPKEVQGSLGFGFVNFATHE 235
Query: 91 AAGKAIEGMDGK 102
AA A++ M+ K
Sbjct: 236 AAAAAVKEMNDK 247
>gi|30692254|ref|NP_849523.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|332661645|gb|AEE87045.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 126
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+E FV GL+ T DE L+ TFS FG+V+ +KI+ RESG S+GFGFV + +A
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 94 KAIEGMDGK 102
AIE M+GK
Sbjct: 62 DAIEEMNGK 70
>gi|15235002|ref|NP_195637.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|544425|sp|Q03251.1|GRP8_ARATH RecName: Full=Glycine-rich RNA-binding protein 8; AltName:
Full=Protein CCR1
gi|16305|emb|CAA78712.1| glycine rich protein [Arabidopsis thaliana]
gi|166658|gb|AAA20201.1| ORF [Arabidopsis thaliana]
gi|166839|gb|AAA32854.1| RNA-binding protein [Arabidopsis thaliana]
gi|4914438|emb|CAB43641.1| glycine-rich protein (clone AtGRP8) [Arabidopsis thaliana]
gi|7270909|emb|CAB80589.1| glycine-rich protein (clone AtGRP8) [Arabidopsis thaliana]
gi|222423067|dbj|BAH19515.1| AT4G39260 [Arabidopsis thaliana]
gi|332661644|gb|AEE87044.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 169
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+E FV GL+ T DE L+ TFS FG+V+ +KI+ RESG S+GFGFV + +A
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 94 KAIEGMDGK 102
AIE M+GK
Sbjct: 62 DAIEEMNGK 70
>gi|211906474|gb|ACJ11730.1| glycine-rich RNA-binding protein [Gossypium hirsutum]
Length = 168
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D L + FSAFGE+V +KI+ RE+G S+GFGFV + +A AIEGM+
Sbjct: 11 FVGGLAWATDDRALEEAFSAFGEIVESKIINDRETGRSRGFGFVTFRDEKAMRDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>gi|311698159|gb|ADQ00374.1| glycine-rich RNA-binding protein [Sequoia sempervirens]
Length = 194
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T D +L D FS FGEV+ +KIV RE+G S+GFGFV ++ +A
Sbjct: 4 AEIEFRCFVGGLAWATDDRSLHDAFSPFGEVLESKIVSDRETGRSRGFGFVTFSDEQAMM 63
Query: 94 KAIEGMDGK 102
AIE M+GK
Sbjct: 64 DAIEAMNGK 72
>gi|799015|emb|CAA89058.1| putative glycine rich RNA binding protein [Solanum tuberosum]
Length = 175
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ TTD+TL D FS + EVV +KI+ RE+G S+GFGFV + +A
Sbjct: 2 ADVEYRCFVGGLAWATTDQTLSDAFSQYAEVVESKIINDRETGRSRGFGFVTFKDEQAMR 61
Query: 94 KAIEGMD 100
AIEGM+
Sbjct: 62 DAIEGMN 68
>gi|115481496|ref|NP_001064341.1| Os10g0321700 [Oryza sativa Japonica Group]
gi|110288867|gb|ABG66004.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638950|dbj|BAF26255.1| Os10g0321700 [Oryza sativa Japonica Group]
Length = 317
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S+ LF+ G+S T D++L++ F+ +GEV+ A+++ R +G S+GFGFV Y + + A A
Sbjct: 29 SSSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAA 88
Query: 96 IEGMDGK 102
I GMDGK
Sbjct: 89 ITGMDGK 95
>gi|469071|dbj|BAA03742.1| RNA-binding glycine-rich protein-1b [Nicotiana sylvestris]
gi|295393565|gb|ADG03638.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 148
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE + FV GL+ TTD TL D F +GEV+ +KI+ RE+G S+GFGFV + +
Sbjct: 2 AEVEYSCFVGGLAWATTDRTLADAFGTYGEVLDSKIINDRETGRSRGFGFVTFKDEKCMR 61
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 62 DAIEGMNGQ 70
>gi|75319742|sp|Q43472.1|GRP_HORVU RecName: Full=Glycine-rich RNA-binding protein blt801; AltName:
Full=Low temperature-responsive RNA-binding protein
gi|1229138|gb|AAB07749.1| low temperature-responsive RNA-binding protein [Hordeum vulgare
subsp. vulgare]
Length = 161
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL T D++L++ FS +G+V+ +KI+ RE+G S+GFGFV +A+ EA
Sbjct: 2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61
Query: 94 KAIEGMDGK 102
+AIE M+G+
Sbjct: 62 QAIEAMNGQ 70
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 27 NP-PQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVK 85
NP PQ P+ + TNL V+ L + T+E L+ FS FG V+ K++K + SG S G+GFV
Sbjct: 12 NPGPQNPETKAKTNLIVNYLPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYGFVN 71
Query: 86 YATLEAAGKAIEGMDG 101
Y + E A AI+ M+G
Sbjct: 72 YGSAEEAEHAIQKMNG 87
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+ A G+ L + +P + +PS +FV L + D L FS F
Sbjct: 276 AMAALTGMTTGVPNLANLAPVAGGNGSTMTSPGDPSYCVFVYNLPETCQDFLLYQLFSPF 335
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV 103
G + +++ +SG K +GFV + E A AI ++G V
Sbjct: 336 GAITSVNVIRDLKSGLCKRYGFVNMKSYEDACSAIMTLNGYV 377
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 35/64 (54%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++V+ L + + L F +G ++ +K++ ++G +G GFV++ A AI
Sbjct: 111 NVYVANLPPQLSLTELDALFQPYGTIITSKVLTDEDTGAGRGVGFVRFDKYTQAEVAIAA 170
Query: 99 MDGK 102
++GK
Sbjct: 171 LNGK 174
>gi|356541091|ref|XP_003539016.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 207
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D+ L FS +GE+V KI+ RE+G S+GFGFV +A+ ++ AIEGM+
Sbjct: 47 FVGGLAWATDDQALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIEGMN 106
Query: 101 GK 102
G+
Sbjct: 107 GQ 108
>gi|469072|dbj|BAA03743.1| RNA-binding gricine-rich protein-1c [Nicotiana sylvestris]
Length = 165
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ TTD TL + FS +GEV+ +KI+ RE+G S+GFGFV + ++
Sbjct: 2 AEVEYRCFVGGLAWATTDRTLGEAFSQYGEVLESKIINDRETGRSRGFGFVTFGDEKSMR 61
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 62 DAIEGMNGQ 70
>gi|974605|gb|AAA75104.1| single-stranded nucleic acid binding protein [Triticum aestivum]
Length = 167
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T D L+ FS +GE++ AKI+ RE+G S+GFGFV + + E+
Sbjct: 2 AETEYRCFVGGLAWATDDNNLQQAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMR 61
Query: 94 KAIEGMDGK 102
+AIE M+GK
Sbjct: 62 QAIEEMNGK 70
>gi|2624326|emb|CAA05728.1| OsGRP1 [Oryza sativa Japonica Group]
Length = 160
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L FS FGE++ +KI+ RE+G S+GFGFV +++ +A AIEGM+
Sbjct: 11 FVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|357167535|ref|XP_003581210.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like
[Brachypodium distachyon]
Length = 137
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 14 RRLF--STSPFSSSLNPPQRPQAEPSTN-LFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
RRLF + +P +++ P Q+ T+ LF+ GLS+ T++TL + F+ +G+V+ A IV
Sbjct: 9 RRLFFSARNPAGAAMRPLLLAQSRGITHKLFIGGLSQFATEDTLAEAFARYGQVLEATIV 68
Query: 71 KHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV 103
+ + SKGFGFVK+A+ E A KA + M+GKV
Sbjct: 69 TDKMTNRSKGFGFVKFASEEEANKARDEMNGKV 101
>gi|115489714|ref|NP_001067344.1| Os12g0632000 [Oryza sativa Japonica Group]
gi|77557139|gb|ABA99935.1| Glycine-rich RNA-binding protein GRP1A, putative, expressed [Oryza
sativa Japonica Group]
gi|113649851|dbj|BAF30363.1| Os12g0632000 [Oryza sativa Japonica Group]
gi|125580173|gb|EAZ21319.1| hypothetical protein OsJ_36973 [Oryza sativa Japonica Group]
gi|215769456|dbj|BAH01685.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 162
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L FS FGE++ +KI+ RE+G S+GFGFV +++ +A AIEGM+
Sbjct: 11 FVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|108863012|gb|ABG22105.1| Glycine-rich RNA-binding protein GRP1A, putative, expressed [Oryza
sativa Japonica Group]
Length = 117
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L FS FGE++ +KI+ RE+G S+GFGFV +++ +A AIEGM+
Sbjct: 11 FVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|223974749|gb|ACN31562.1| unknown [Zea mays]
Length = 326
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T EA AIEGM+
Sbjct: 11 FVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|388512303|gb|AFK44213.1| unknown [Medicago truncatula]
Length = 121
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S+ LF+ GLS D++LRD F+ +G+VV A+++ RE+G S+GFGF+ + + E+A A
Sbjct: 9 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFINFTSEESATSA 68
Query: 96 IEGMDGK 102
+ MDG+
Sbjct: 69 LS-MDGQ 74
>gi|408398205|gb|EKJ77338.1| hypothetical protein FPSE_02416 [Fusarium pseudograminearum CS3096]
Length = 128
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L+V LS TTD+TLR TFS FGEV + I++ RE+G ++GFGFV ++T E A A++ +
Sbjct: 4 LYVGNLSWNTTDDTLRQTFSEFGEVTDSIIMRDRETGRARGFGFVTFSTEEQANAAVDAL 63
Query: 100 D 100
+
Sbjct: 64 N 64
>gi|6911142|gb|AAF31402.1| putative glycine-rich RNA binding protein 1 [Catharanthus roseus]
Length = 137
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ TTD++L + FS +GEV+ +KI+ RE+G S+GFGFV + ++ AIEGM+
Sbjct: 11 FVGGLAWATTDQSLSEAFSQYGEVLESKIINDRETGRSRGFGFVTFGDEKSMKDAIEGMN 70
Query: 101 GKV 103
G+
Sbjct: 71 GQT 73
>gi|414878515|tpg|DAA55646.1| TPA: hypothetical protein ZEAMMB73_431003 [Zea mays]
Length = 113
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NLFV GLS T + L+D FS G+V+ AK++ H SG SKGFGFVK+++ A A++
Sbjct: 34 NLFVGGLSYDTNETALKDVFSQCGDVIAAKVICHPTSGKSKGFGFVKFSSQNQADAALQK 93
Query: 99 MDGKV 103
M+G+V
Sbjct: 94 MNGQV 98
>gi|30692256|ref|NP_849524.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|332661646|gb|AEE87046.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 92
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+E FV GL+ T DE L+ TFS FG+V+ +KI+ RESG S+GFGFV + +A
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 94 KAIEGMDGK 102
AIE M+GK
Sbjct: 62 DAIEEMNGK 70
>gi|293336981|ref|NP_001169115.1| uncharacterized protein LOC100382959 [Zea mays]
gi|223975005|gb|ACN31690.1| unknown [Zea mays]
gi|414887554|tpg|DAA63568.1| TPA: hypothetical protein ZEAMMB73_633512 [Zea mays]
Length = 103
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 47/67 (70%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST +FVS LS TT+E +D FS FG V A++++ ++G KGFGFVKY++ A KA+
Sbjct: 20 STEIFVSRLSFYTTEEEFKDIFSPFGTVEEARLMRDHQTGRMKGFGFVKYSSQAEAEKAV 79
Query: 97 EGMDGKV 103
+ MDGK+
Sbjct: 80 KAMDGKI 86
>gi|6911144|gb|AAF31403.1|AF200322_1 putative glycine-rich RNA binding protein 3 [Catharanthus roseus]
Length = 164
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 47/70 (67%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ TTD++L + FS +GE++ +KI+ RE+G S+GFGFV + ++
Sbjct: 4 ADVEYRCFVGGLAWATTDQSLSEAFSQYGEILESKIINDRETGRSRGFGFVTFKDEQSMR 63
Query: 94 KAIEGMDGKV 103
AIEGM+G+
Sbjct: 64 DAIEGMNGQT 73
>gi|168061382|ref|XP_001782668.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665828|gb|EDQ52499.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 82
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
+ + +++V GLS +T+ETL+ +F FGEVV KIV R+SG S+GFGFV ++ AA
Sbjct: 2 DDTNSVYVGGLSYGSTEETLKRSFMQFGEVVSVKIVHDRDSGESRGFGFVTFSNPRAATV 61
Query: 95 AIEGMDGK 102
AI+ MDG+
Sbjct: 62 AIQDMDGR 69
>gi|323650232|gb|ADX97202.1| cold-inducible RNA-binding protein [Perca flavescens]
Length = 80
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GLS TT+E+L F FG + ++K R++GYS+GFGFVKY E A A+EGM
Sbjct: 4 LFIGGLSFDTTEESLAAAFGKFGTIEKVDVIKDRDTGYSRGFGFVKYENSEDAKDAMEGM 63
Query: 100 DGKV 103
+GK
Sbjct: 64 NGKT 67
>gi|399886791|gb|AFP52931.1| RBP1 [Hordeum vulgare]
Length = 162
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 42/62 (67%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV LS T D L FS+FGE++ AKI+ RE+G S+GFGFV ++ +A AIEGM+
Sbjct: 12 FVGSLSWNTDDRGLEAAFSSFGEILDAKIINDRETGRSRGFGFVSFSNEQAMQDAIEGMN 71
Query: 101 GK 102
GK
Sbjct: 72 GK 73
>gi|346226819|ref|ZP_08847961.1| RNP-1 like RNA-binding protein [Anaerophaga thermohalophila DSM
12881]
Length = 93
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+FV+ LS RT E L FS FGEV+ AK++ RE+GYSK +GFV+ A + A AIE
Sbjct: 2 NIFVAKLSSRTKSEDLEQMFSEFGEVISAKVIMDRETGYSKRYGFVEMANDDEATAAIEN 61
Query: 99 MDGK 102
+D K
Sbjct: 62 LDDK 65
>gi|359475330|ref|XP_003631658.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Vitis
vinifera]
Length = 162
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T D++L FS FGE++ +KI+ RE+G S+GFGFV +++ ++
Sbjct: 4 AEIEYRCFVGGLAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMR 63
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 64 DAIEGMNGQ 72
>gi|297741463|emb|CBI32594.3| unnamed protein product [Vitis vinifera]
Length = 121
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T D++L FS FGE++ +KI+ RE+G S+GFGFV +++ ++
Sbjct: 4 AEIEYRCFVGGLAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMR 63
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 64 DAIEGMNGQ 72
>gi|224091949|ref|XP_002309412.1| predicted protein [Populus trichocarpa]
gi|222855388|gb|EEE92935.1| predicted protein [Populus trichocarpa]
Length = 139
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T LFV GLS TT+ L + FS +G+VV AKIV R SKGFGFV YA+ + A KA+
Sbjct: 38 TTKLFVGGLSIYTTENGLSEAFSQYGQVVEAKIVMDRALDRSKGFGFVTYASEDEAQKAL 97
Query: 97 EGMDGK 102
+ M+GK
Sbjct: 98 DEMNGK 103
>gi|300121030|emb|CBK21412.2| unnamed protein product [Blastocystis hominis]
Length = 296
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 45/78 (57%)
Query: 24 SSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
+S N Q +FVS LS TTDE LRD FS G++ H KI+ R++G S+G G
Sbjct: 85 NSENVRQNRNYNDENKVFVSSLSWNTTDEMLRDAFSQCGKIEHYKILTDRQTGRSRGMGI 144
Query: 84 VKYATLEAAGKAIEGMDG 101
VK++T E AI M+G
Sbjct: 145 VKFSTREEMNNAISTMNG 162
>gi|20152613|emb|CAD29693.1| putative glycine rich protein [Rumex obtusifolius]
Length = 168
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T D++L FS +G+V+ +KI+ RE+G S+GFGFV +++ +A
Sbjct: 3 AEVEYRCFVGGLAWATDDQSLERAFSNYGQVLESKIINDRETGRSRGFGFVTFSSEQAMR 62
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 63 DAIEGMNGQ 71
>gi|311780287|gb|ADQ08684.1| putative glycine-rich RNA-binding protein 1 [Malus hupehensis]
Length = 164
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T +E L FS +GE++ +KI+ RE+G S+GFGFV + + +A
Sbjct: 4 AEIEFRCFVGGLAWATDNEALERAFSQYGEIIESKIINDRETGRSRGFGFVTFGSEQAMR 63
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 64 DAIEGMNGQ 72
>gi|296142019|gb|ADG96008.1| putative glycine-rich RNA-binding protein 1 [Malus prunifolia]
Length = 171
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T +E L FS +GE++ +KI+ RE+G S+GFGFV + + +A
Sbjct: 4 AEIEFRCFVGGLAWATDNEALERAFSQYGEIIESKIINDRETGRSRGFGFVTFGSEQAMR 63
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 64 DAIEGMNGQ 72
>gi|118488717|gb|ABK96169.1| unknown [Populus trichocarpa]
Length = 241
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S+ +F+ G+S +T D L++ F +G VV A+I+ R++G S+GFGFV Y + E A A
Sbjct: 38 SSSKIFIGGISFQTDDNGLKEAFDKYGNVVEARIIMDRDTGRSRGFGFVTYTSSEEASSA 97
Query: 96 IEGMDGK 102
I+ MDG+
Sbjct: 98 IQAMDGQ 104
>gi|406944721|gb|EKD76419.1| hypothetical protein ACD_43C00118G0001 [uncultured bacterium]
Length = 84
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+TNLFV G++ ++TD+TLR+ F G VV AKI+ + +G S+GFGFV+ +T E A AI
Sbjct: 2 NTNLFVGGIAFKSTDDTLREAFMQAGNVVSAKIIMDKMTGRSRGFGFVEMSTPEEAQAAI 61
Query: 97 EGMDGK 102
+ DGK
Sbjct: 62 QMWDGK 67
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 50/72 (69%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
+ PQ+ P+T LF+ LS T++ +R++FS +G++V + R++G KGFG+V+Y +
Sbjct: 273 EAPQSAPTTTLFLGNLSFNVTEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYVEYGDV 332
Query: 90 EAAGKAIEGMDG 101
E A KA+EG++G
Sbjct: 333 ETAQKAVEGLNG 344
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 27 NPPQRPQAEPSTN--LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFV 84
P ++P+ E N +FV LS +E L TF+ G V A+I+ +E+G +KGFG+V
Sbjct: 170 EPTKKPKTEEPVNSTVFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAKGFGYV 229
Query: 85 KYATLEA--AGKAIEG--MDGK 102
+ + +A A A+ G +DG+
Sbjct: 230 TFESADALTAAMALTGTELDGR 251
>gi|238011394|gb|ACR36732.1| unknown [Zea mays]
Length = 149
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T EA AIEGM+
Sbjct: 11 FVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|219888685|gb|ACL54717.1| unknown [Zea mays]
gi|414869098|tpg|DAA47655.1| TPA: glycine-rich protein1 [Zea mays]
Length = 144
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T EA AIEGM+
Sbjct: 11 FVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|195612516|gb|ACG28088.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|414869096|tpg|DAA47653.1| TPA: glycine-rich protein1 isoform 1 [Zea mays]
gi|414869097|tpg|DAA47654.1| TPA: glycine-rich protein1 isoform 2 [Zea mays]
Length = 155
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T EA AIEGM+
Sbjct: 11 FVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|195609654|gb|ACG26657.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612080|gb|ACG27870.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612572|gb|ACG28116.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T EA AIEGM+
Sbjct: 11 FVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|326493798|dbj|BAJ85361.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T D L+ FS +GE++ AKI+ RE+G S+GFGFV + + E+
Sbjct: 2 AETEYRCFVGGLAWATDDHNLQAAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMR 61
Query: 94 KAIEGMDGK 102
+AIE M+GK
Sbjct: 62 QAIEEMNGK 70
>gi|728594|emb|CAA88558.1| glycine rich protein, RNA binding protein [Hordeum vulgare subsp.
vulgare]
Length = 173
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T D L+ FS +GE++ AKI+ RE+G S+GFGFV + + E+
Sbjct: 2 AETEYRCFVGGLAWATDDHNLQAAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMR 61
Query: 94 KAIEGMDGK 102
+AIE M+GK
Sbjct: 62 QAIEEMNGK 70
>gi|223942615|gb|ACN25391.1| unknown [Zea mays]
Length = 120
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T EA AIEGM+
Sbjct: 11 FVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|255571962|ref|XP_002526922.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223533674|gb|EEF35409.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 166
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T+D+ L + FSA+GEV+ +KI+ RE+G S+GFGFV + ++ AIEGM+
Sbjct: 11 FVGGLAWATSDKALEEAFSAYGEVLESKIINDRETGRSRGFGFVTFNNEKSMRDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>gi|18076086|emb|CAC80549.1| glycine-rich RNA-binding protein [Ricinus communis]
Length = 165
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T+D+ L + FSA+GEV+ +KI+ RE+G S+GFGFV + ++ AIEGM+
Sbjct: 11 FVGGLAWATSDKALEEAFSAYGEVLESKIINDRETGRSRGFGFVTFNNEKSMRDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>gi|255568699|ref|XP_002525321.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223535380|gb|EEF37054.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 126
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 14 RRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHR 73
R L S + +++L+ P P++ LFV+GLS +++L+D FS+FGEV +I+ +
Sbjct: 3 RALISVAKRATTLH--NSPSPPPNSKLFVAGLSWSVDEKSLKDAFSSFGEVSEVRIMYDK 60
Query: 74 ESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL 105
+SG S+GFGFV ++ A A + MDGK L
Sbjct: 61 DSGRSRGFGFVNFSKENEAVCAKDAMDGKALL 92
>gi|356576299|ref|XP_003556270.1| PREDICTED: uncharacterized protein LOC100791652 [Glycine max]
Length = 386
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 27 NPPQRPQAEP--STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFV 84
N + Q P + LFV+GLS T+++TLR F FGE+V K++ + S SKG+ FV
Sbjct: 284 NSSEASQEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFV 343
Query: 85 KYATLEAAGKAIEGMDGKV 103
+Y T EAA A++ M+GK+
Sbjct: 344 EYTTEEAASAALKEMNGKI 362
>gi|2293480|gb|AAB65412.1| glycine-rich protein [Oryza sativa Indica Group]
Length = 161
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
FV GL+ T D +L FS +GE++ +KI+ RE+G S+GFGFV +++ +A AIEGM
Sbjct: 10 CFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGM 69
Query: 100 DGK 102
+GK
Sbjct: 70 NGK 72
>gi|357150983|ref|XP_003575643.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 108
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 49/67 (73%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST +FVS LS TT+E L++ FS FG + A++++ ++G KGFGFVKY++ AA KA+
Sbjct: 25 STEIFVSKLSFYTTEEELKNIFSPFGAIEEARLMRDNQTGRPKGFGFVKYSSQVAAEKAV 84
Query: 97 EGMDGKV 103
+ MDG++
Sbjct: 85 KAMDGRI 91
>gi|169244425|gb|ACA50486.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|306415963|gb|ADM86856.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|385718874|gb|AFI71864.1| Glycin-rich RNA binding protein [Oryza sativa]
Length = 161
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L FS +GE++ +KI+ RE+G S+GFGFV +++ +A AIEGM+
Sbjct: 11 FVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|125537516|gb|EAY84004.1| hypothetical protein OsI_39235 [Oryza sativa Indica Group]
Length = 161
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L FS +GE++ +KI+ RE+G S+GFGFV +++ +A AIEGM+
Sbjct: 11 FVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|18103931|emb|CAC83314.1| glycine rich RNA binding protein [Oryza sativa Indica Group]
Length = 194
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L FS +GE++ +KI+ RE+G S+GFGFV +++ +A AIEGM+
Sbjct: 11 FVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|147867424|emb|CAN83272.1| hypothetical protein VITISV_001132 [Vitis vinifera]
Length = 408
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
+P LFV+GLS T+++TLR F FGE+V KI+ + S SKG+ F++Y+T E
Sbjct: 309 QPTNIKXKKLFVTGLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYSTEE 368
Query: 91 AAGKAIEGMDGKV 103
AA A++ M+GK+
Sbjct: 369 AASAALKEMNGKI 381
>gi|346978360|gb|EGY21812.1| glycine-rich RNA-binding protein [Verticillium dahliae VdLs.17]
Length = 175
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LF+ GL+ TT+ETLR F FG V A +VK R++G S+GFGFV+Y+ E A KAI+
Sbjct: 2 SKLFIGGLAWHTTEETLRSRFEEFGAVDEAVVVKDRDTGRSRGFGFVRYSQDEDAQKAID 61
Query: 98 GMD 100
M+
Sbjct: 62 AMN 64
>gi|115454539|ref|NP_001050870.1| Os03g0670700 [Oryza sativa Japonica Group]
gi|108710321|gb|ABF98116.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
gi|113549341|dbj|BAF12784.1| Os03g0670700 [Oryza sativa Japonica Group]
Length = 196
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
FV GL+ T D +L FS +GE++ +KI+ RE+G S+GFGFV +++ ++ AIEGM
Sbjct: 10 CFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGM 69
Query: 100 DGK 102
+GK
Sbjct: 70 NGK 72
>gi|298528813|ref|ZP_07016217.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298512465|gb|EFI36367.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 84
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL+V LS TT+ LRD+F+ FGEV AKI++ RE+G S+GFGFV+ A +A+E
Sbjct: 2 TNLYVGNLSWNTTETQLRDSFAEFGEVSSAKIIEDRETGRSRGFGFVEMEN--GADEAVE 59
Query: 98 GMDGK 102
++GK
Sbjct: 60 KLNGK 64
>gi|335423511|ref|ZP_08552532.1| RNP-1 like RNA-binding protein [Salinisphaera shabanensis E1L3A]
gi|334891336|gb|EGM29584.1| RNP-1 like RNA-binding protein [Salinisphaera shabanensis E1L3A]
Length = 90
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++V LS T D+ LR F AFGEV AK++ RE+G S+GFGFV+ A +AIEG
Sbjct: 2 NIYVGNLSWNTNDDELRGAFEAFGEVSSAKVIMDRETGRSRGFGFVEMPDDNDAKQAIEG 61
Query: 99 MDGK 102
M+ K
Sbjct: 62 MNNK 65
>gi|294461052|gb|ADE76094.1| unknown [Picea sitchensis]
Length = 150
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS T ++ LRD FS +GE++ +++ +R SG SKGFGFV++A+ A A++ M
Sbjct: 37 LFVGGLSFDTNEKVLRDAFSLYGEILEVRVIINRASGLSKGFGFVQFASETDAVNALKEM 96
Query: 100 DGK 102
DG+
Sbjct: 97 DGQ 99
>gi|15822705|gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum]
Length = 339
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 48/66 (72%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV GLS T + +L++TFS +GEV+ A+++ RE+G S+GFGF+ + + E A A+
Sbjct: 39 SSKLFVGGLSYGTDESSLKETFSQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSAM 98
Query: 97 EGMDGK 102
+ MDG+
Sbjct: 99 QAMDGQ 104
>gi|255547195|ref|XP_002514655.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223546259|gb|EEF47761.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 267
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 46/66 (69%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ +FV G+S +T D +LR+ F +GEV+ A+++ RE+G S+GF FV Y + E A AI
Sbjct: 39 SSKVFVGGISYQTDDTSLREAFGKYGEVIEARVIIDRETGRSRGFAFVTYTSSEEASSAI 98
Query: 97 EGMDGK 102
+ +DG+
Sbjct: 99 QALDGQ 104
>gi|544426|sp|Q03878.1|GRP1_DAUCA RecName: Full=Glycine-rich RNA-binding protein
gi|18347|emb|CAA41152.1| glycine-rich protein [Daucus carota]
gi|445138|prf||1908438A Gly-rich protein
Length = 157
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T DE+L FS FG++ +KI+ RE+G S+GFGFV + ++
Sbjct: 2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 62 DAIEGMNGQ 70
>gi|209735756|gb|ACI68747.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 81
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS TT+E+L + F+ +G + +++ +E+G S+GFGFVKY E A A+EGM
Sbjct: 7 LFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALEGM 66
Query: 100 DGK 102
+GK
Sbjct: 67 NGK 69
>gi|388494768|gb|AFK35450.1| unknown [Medicago truncatula]
Length = 176
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
Q ++ S LF+ G+S T + LR+ FS +G+V+ AKI+ R++G S+GFGF+ +AT
Sbjct: 32 QAIRSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATS 91
Query: 90 EAAGKAIEGMDGK 102
E A A++ MD K
Sbjct: 92 EEASSALQAMDNK 104
>gi|449500867|ref|XP_004161215.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 8/103 (7%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQA--EPSTNLFVSGLSKRTTDETLRDTFS 59
A+R A+A R L S P PP R + +T LFV GLS TTD+ L + FS
Sbjct: 3 AIRKAMAITSNRRVLPSLFP------PPSRLVSFRAIATKLFVGGLSYYTTDKGLSEAFS 56
Query: 60 AFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
+G+V+ A +V R S SKGFGFV +A+L+ A A+ M+GK
Sbjct: 57 QYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGK 99
>gi|168034678|ref|XP_001769839.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678948|gb|EDQ65401.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 133
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LF+ GL+ T + TLRD FS+FG V KI+ R++G S+GFGFV + + E A A+
Sbjct: 44 SSKLFIGGLAWATDENTLRDAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVAL 103
Query: 97 EGMDGK 102
+ MDG+
Sbjct: 104 QEMDGR 109
>gi|281212020|gb|EFA86181.1| hypothetical protein PPL_00743 [Polysphondylium pallidum PN500]
Length = 602
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
+ P + TNL ++ + K + E LRD F+ FGE+V K+V R + + G+GFVKYAT
Sbjct: 145 EDPDLDALTNLIINNIPKHFSSEDLRDMFANFGEIVSYKVVTKRGNSKNMGYGFVKYATP 204
Query: 90 EAAGKAIEGMDG 101
E A AIE M+G
Sbjct: 205 EGATAAIEQMNG 216
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V+ L + T E L + FS FGEVV KI+ +G S+ GFV ++ A A+
Sbjct: 240 NLYVNRLEPQVTKEDLAEAFSKFGEVVETKILVDPNTGSSRCVGFVHFSARRNALTALSA 299
Query: 99 MDG 101
M+G
Sbjct: 300 MNG 302
>gi|356544204|ref|XP_003540544.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 364
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG +V + KI++ E+G S+GFGF+ Y + EA+ AIE
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIE 172
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 173 AMNGQY-LC 180
>gi|414878516|tpg|DAA55647.1| TPA: hypothetical protein ZEAMMB73_431003 [Zea mays]
Length = 97
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NLFV GLS T + L+D FS G+V+ AK++ H SG SKGFGFVK+++ A A++
Sbjct: 34 NLFVGGLSYDTNETALKDVFSQCGDVIAAKVICHPTSGKSKGFGFVKFSSQNQADAALQK 93
Query: 99 MDG 101
M+G
Sbjct: 94 MNG 96
>gi|46139099|ref|XP_391240.1| hypothetical protein FG11064.1 [Gibberella zeae PH-1]
Length = 127
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L+V LS TTDETLR TFS FGEV + I++ R++G ++GFGFV ++T E A A++ +
Sbjct: 4 LYVGNLSWNTTDETLRQTFSEFGEVTDSIIMRDRDTGRARGFGFVTFSTEEQATAAVDAL 63
Query: 100 D 100
+
Sbjct: 64 N 64
>gi|38344030|emb|CAE01512.2| OJ991214_12.1 [Oryza sativa Japonica Group]
gi|38346331|emb|CAE02067.2| OJ000126_13.13 [Oryza sativa Japonica Group]
gi|116309334|emb|CAH66418.1| H0622F05.1 [Oryza sativa Indica Group]
gi|116309399|emb|CAH66476.1| OSIGBa0137L20.5 [Oryza sativa Indica Group]
Length = 137
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GLS+ T+++L + FS +G+V+ A IV + + KGFGFVK+A+ EAA KA E M
Sbjct: 39 LFIGGLSQFATEDSLAEAFSQYGQVLEATIVTDKMTNRPKGFGFVKFASEEAANKAKEEM 98
Query: 100 DGKV 103
+GKV
Sbjct: 99 NGKV 102
>gi|449462934|ref|XP_004149190.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T LFV GLS TTD+ L + FS +G+V+ A +V R S SKGFGFV +A+L+ A A+
Sbjct: 34 ATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTAL 93
Query: 97 EGMDGK 102
M+GK
Sbjct: 94 SEMNGK 99
>gi|297838115|ref|XP_002886939.1| hypothetical protein ARALYDRAFT_475645 [Arabidopsis lyrata subsp.
lyrata]
gi|297332780|gb|EFH63198.1| hypothetical protein ARALYDRAFT_475645 [Arabidopsis lyrata subsp.
lyrata]
Length = 782
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
S+ PP + E TNL++ L D+ L + FS+FGE+V AK++K R +G SKG+G
Sbjct: 449 STPTKPPSKEYDE--TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 506
Query: 83 FVKYATLEAAGKAIEGMDG 101
FVKYA ++ A A++ M+G
Sbjct: 507 FVKYADVQMANTAVQAMNG 525
>gi|449486948|ref|XP_004157450.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 173
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 24 SSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
S+L+ Q + S+ +FV GLS T D+ L + F+ +GEVV A+++ R++G S+GFGF
Sbjct: 26 SNLSVFQTLRFMSSSKVFVGGLSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGF 85
Query: 84 VKYATLEAAGKAIEGMDGK 102
V + E A AI+ +DG+
Sbjct: 86 VTFGASEDASSAIQALDGQ 104
>gi|449439323|ref|XP_004137435.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 171
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 24 SSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
S+L+ Q + S+ +FV GLS T D+ L + F+ +GEVV A+++ R++G S+GFGF
Sbjct: 26 SNLSVFQTLRFMSSSKVFVGGLSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGF 85
Query: 84 VKYATLEAAGKAIEGMDGK 102
V + E A AI+ +DG+
Sbjct: 86 VTFGASEDASSAIQALDGQ 104
>gi|242084350|ref|XP_002442600.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
gi|241943293|gb|EES16438.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
Length = 165
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L FS +GEV+ +KI+ RE+ S+GFGFV ++T EA AIEGM+
Sbjct: 11 FVGGLAWATDDNSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|15241418|ref|NP_199943.1| splicing factor 1 [Arabidopsis thaliana]
gi|30696034|ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana]
gi|79330558|ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana]
gi|8843867|dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana]
gi|23297082|gb|AAN13087.1| unknown protein [Arabidopsis thaliana]
gi|222423074|dbj|BAH19518.1| AT5G51300 [Arabidopsis thaliana]
gi|222423561|dbj|BAH19750.1| AT5G51300 [Arabidopsis thaliana]
gi|332008680|gb|AED96063.1| splicing factor 1 [Arabidopsis thaliana]
gi|332008681|gb|AED96064.1| splicing factor 1 [Arabidopsis thaliana]
gi|332008682|gb|AED96065.1| splicing factor 1 [Arabidopsis thaliana]
Length = 804
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
S+ PP + E TNL++ L D+ L + FS+FGE+V AK++K R +G SKG+G
Sbjct: 467 STPTKPPSKEYDE--TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 524
Query: 83 FVKYATLEAAGKAIEGMDG 101
FVKYA ++ A A++ M+G
Sbjct: 525 FVKYADVQMANTAVQAMNG 543
>gi|449468384|ref|XP_004151901.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
gi|449522522|ref|XP_004168275.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 145
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+ LFV+GLS + +L+D FS+FGEV +IV ++SG S+GFGFV +A A A
Sbjct: 43 NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAK 102
Query: 97 EGMDGKVSL 105
+ MDGK L
Sbjct: 103 DAMDGKAVL 111
>gi|13877739|gb|AAK43947.1|AF370132_1 unknown protein [Arabidopsis thaliana]
Length = 804
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
S+ PP + E TNL++ L D+ L + FS+FGE+V AK++K R +G SKG+G
Sbjct: 467 STPTKPPSKEYDE--TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 524
Query: 83 FVKYATLEAAGKAIEGMDG 101
FVKYA ++ A A++ M+G
Sbjct: 525 FVKYADVQMANTAVQAMNG 543
>gi|198282085|ref|NP_001105572.1| glycine-rich RNA binding protein [Zea mays]
gi|2668742|gb|AAB88616.1| glycine-rich RNA binding protein [Zea mays]
gi|194692162|gb|ACF80165.1| unknown [Zea mays]
gi|195623052|gb|ACG33356.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 145
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 11 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|392593259|gb|EIW82584.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 116
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S ++V LS TTD+TLR FS FG VV + +++ R++G S+GFGFV Y++ + A AI
Sbjct: 3 SAKIYVGNLSWNTTDDTLRQAFSTFGNVVDSVVMRDRDTGRSRGFGFVTYSSTQEAESAI 62
Query: 97 EGMDGK 102
G++ +
Sbjct: 63 SGLNDQ 68
>gi|195618802|gb|ACG31231.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195625478|gb|ACG34569.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 146
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 11 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|194693774|gb|ACF80971.1| unknown [Zea mays]
Length = 133
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 11 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|297795935|ref|XP_002865852.1| hypothetical protein ARALYDRAFT_495202 [Arabidopsis lyrata subsp.
lyrata]
gi|297311687|gb|EFH42111.1| hypothetical protein ARALYDRAFT_495202 [Arabidopsis lyrata subsp.
lyrata]
Length = 798
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
S+ PP + E TNL++ L D+ L + FS+FGE+V AK++K R +G SKG+G
Sbjct: 462 STPTKPPSKEYDE--TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 519
Query: 83 FVKYATLEAAGKAIEGMDG 101
FVKYA ++ A A++ M+G
Sbjct: 520 FVKYADVQMANTAVQAMNG 538
>gi|20257687|gb|AAM16009.1| glycine-rich RNA binding protein [Zea mays]
gi|20257713|gb|AAM16022.1| glycine-rich RNA binding protein [Zea mays]
Length = 149
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 14 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 73
Query: 101 GK 102
GK
Sbjct: 74 GK 75
>gi|20257715|gb|AAM16023.1| glycine-rich RNA binding protein [Zea mays]
gi|20257721|gb|AAM16026.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 14 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 73
Query: 101 GK 102
GK
Sbjct: 74 GK 75
>gi|20257689|gb|AAM16010.1| glycine-rich RNA binding protein [Zea mays]
Length = 147
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 13 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 72
Query: 101 GK 102
GK
Sbjct: 73 GK 74
>gi|395823283|ref|XP_003803977.1| PREDICTED: LOW QUALITY PROTEIN: nucleolin [Otolemur garnettii]
Length = 700
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 59/104 (56%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + APRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 546 AIRLELQAPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 588
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 589 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 630
>gi|125548231|gb|EAY94053.1| hypothetical protein OsI_15830 [Oryza sativa Indica Group]
Length = 113
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GLS+ T+++L + FS +G+V+ A IV + + KGFGFVK+A+ EAA KA E M
Sbjct: 39 LFIGGLSQFATEDSLAEAFSQYGQVLEATIVTDKMTNRPKGFGFVKFASEEAANKAKEEM 98
Query: 100 DGKVSL 105
+GK S
Sbjct: 99 NGKASF 104
>gi|353235522|emb|CCA67534.1| related to glycine-rich RNA-binding protein [Piriformospora indica
DSM 11827]
Length = 236
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S ++V LS TTD+TLR+ F +G VV + +++ RE+G S+GFGFV Y++ E A AI
Sbjct: 2 SAKIYVGNLSWNTTDDTLREAFRQYGNVVDSIVMRDRETGRSRGFGFVTYSSEEEASNAI 61
Query: 97 EGMD 100
G++
Sbjct: 62 SGLN 65
>gi|223647416|gb|ACN10466.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 193
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS TT+E+L + F+ +G + +++ +E+G S+GFGFVKY E A A+EGM
Sbjct: 7 LFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALEGM 66
Query: 100 DGK 102
+GK
Sbjct: 67 NGK 69
>gi|20257673|gb|AAM16002.1| glycine-rich RNA binding protein [Zea mays]
Length = 139
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 5 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 64
Query: 101 GK 102
GK
Sbjct: 65 GK 66
>gi|116781215|gb|ABK22008.1| unknown [Picea sitchensis]
Length = 140
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 45/67 (67%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T LFV GLS TT++ L + FS FGEVV K+V R S SKGFGFV+YA+ A +A
Sbjct: 31 TTKLFVGGLSFYTTEKALTEAFSRFGEVVEVKVVMDRVSQRSKGFGFVQYASEADAERAK 90
Query: 97 EGMDGKV 103
M+GKV
Sbjct: 91 AEMNGKV 97
>gi|20257695|gb|AAM16013.1| glycine-rich RNA binding protein [Zea mays]
Length = 149
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 15 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 74
Query: 101 GK 102
GK
Sbjct: 75 GK 76
>gi|225464121|ref|XP_002264164.1| PREDICTED: uncharacterized protein LOC100265361 [Vitis vinifera]
Length = 409
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
+P + LFV+GLS T+++TLR F FGE+V KI+ + S SKG+ F++Y T
Sbjct: 309 NQPTNIKTKKLFVTGLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTE 368
Query: 90 EAAGKAIEGMDGKV 103
EAA A++ M+GK+
Sbjct: 369 EAASAALKEMNGKI 382
>gi|357442985|ref|XP_003591770.1| RNA-binding protein [Medicago truncatula]
gi|355480818|gb|AES62021.1| RNA-binding protein [Medicago truncatula]
Length = 284
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Query: 22 FSSSLNPPQRPQAEP-----STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESG 76
+SLN P +A + LFV+GLS T+++TLR F FGE+V K++ + S
Sbjct: 171 LENSLNMPNSSEASQEASVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISK 230
Query: 77 YSKGFGFVKYATLEAAGKAIEGMDGKV 103
SKG+ F++Y T EAA A++ M+GK+
Sbjct: 231 RSKGYAFIEYTTEEAASAALKEMNGKI 257
>gi|2267567|gb|AAB63581.1| glycine-rich RNA binding protein 1 [Pelargonium x hortorum]
gi|2267569|gb|AAB63582.1| glycine-rich RNA binding protein 2 [Pelargonium x hortorum]
Length = 166
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T D L FS +GEVV +KI+ RE+G S+GFGFV ++ ++
Sbjct: 4 ADVEYRCFVGGLAWATDDHALEQAFSQYGEVVESKIINDRETGRSRGFGFVTFSNEKSMN 63
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 64 DAIEGMNGQ 72
>gi|351725383|ref|NP_001238370.1| uncharacterized protein LOC100527079 [Glycine max]
gi|255631508|gb|ACU16121.1| unknown [Glycine max]
Length = 130
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS TT+ L + FS +G+V+ AKIV R S SKGFGFV +A+ + A AIE M
Sbjct: 31 LFVGGLSFYTTENALSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDEAENAIEDM 90
Query: 100 DGK 102
GK
Sbjct: 91 KGK 93
>gi|390600853|gb|EIN10247.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 329
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Query: 20 SPFSSSLNPPQRPQAEP-----STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRE 74
SP+S PP+RP P S+ L V GLS RT + L D FS FG+V IV +
Sbjct: 52 SPYSRRSPPPKRPTHAPHAPPPSSVLGVFGLSIRTQERDLDDEFSRFGQVEKVTIVYDQR 111
Query: 75 SGYSKGFGFVKYATLEAAGKAIEGMDG 101
SG S+GFGF+K AT+E A KAIE ++G
Sbjct: 112 SGRSRGFGFIKMATVEDATKAIENLNG 138
>gi|218193471|gb|EEC75898.1| hypothetical protein OsI_12955 [Oryza sativa Indica Group]
Length = 139
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L FS +GE++ +KI+ RE+G S+GFGFV +++ ++ AIEGM+
Sbjct: 11 FVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|20257691|gb|AAM16011.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 20 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 79
Query: 101 GK 102
GK
Sbjct: 80 GK 81
>gi|20257667|gb|AAM15999.1| glycine-rich RNA binding protein [Zea mays]
gi|20257671|gb|AAM16001.1| glycine-rich RNA binding protein [Zea mays]
gi|20257677|gb|AAM16004.1| glycine-rich RNA binding protein [Zea mays]
gi|20257685|gb|AAM16008.1| glycine-rich RNA binding protein [Zea mays]
gi|20257703|gb|AAM16017.1| glycine-rich RNA binding protein [Zea mays]
gi|20257717|gb|AAM16024.1| glycine-rich RNA binding protein [Zea mays]
gi|20257719|gb|AAM16025.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 20 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 79
Query: 101 GK 102
GK
Sbjct: 80 GK 81
>gi|357152187|ref|XP_003576037.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 102
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D++L + F +FGE++ AK++ RE+G S+GFGFV + T +A AI M+
Sbjct: 7 FVGGLAWVTDDQSLENAFRSFGEILDAKVIPDRETGRSRGFGFVTFTTEQAMQNAINAMN 66
Query: 101 GK 102
GK
Sbjct: 67 GK 68
>gi|20257683|gb|AAM16007.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 20 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 79
Query: 101 GK 102
GK
Sbjct: 80 GK 81
>gi|20257675|gb|AAM16003.1| glycine-rich RNA binding protein [Zea mays]
Length = 156
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 21 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 80
Query: 101 GK 102
GK
Sbjct: 81 GK 82
>gi|20257669|gb|AAM16000.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 21 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 80
Query: 101 GK 102
GK
Sbjct: 81 GK 82
>gi|195626882|gb|ACG35271.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 203
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 68 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 127
Query: 101 GK 102
GK
Sbjct: 128 GK 129
>gi|5929884|gb|AAD56625.1|AF151373_1 nucleolin-related protein NRP [Rattus norvegicus]
Length = 715
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETLR++F
Sbjct: 557 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLRESFDG- 599
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 600 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 641
>gi|336272443|ref|XP_003350978.1| hypothetical protein SMAC_04282 [Sordaria macrospora k-hell]
gi|380090745|emb|CCC04915.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 192
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS T D LR F FG V A +VK R++G S+GFGFV+YA A AI M
Sbjct: 4 LFVGGLSWNTDDNMLRAKFEEFGAVEEAVVVKDRDTGRSRGFGFVRYANDADAENAIANM 63
Query: 100 DGK 102
DG+
Sbjct: 64 DGQ 66
>gi|18402803|ref|NP_566672.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20466724|gb|AAM20679.1| unknown protein [Arabidopsis thaliana]
gi|21536799|gb|AAM61131.1| unknown [Arabidopsis thaliana]
gi|25084257|gb|AAN72206.1| unknown protein [Arabidopsis thaliana]
gi|332642921|gb|AEE76442.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 374
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 5/81 (6%)
Query: 23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
S +PP + + LF++GLS T+++TLR F FGE+V KI+ + S SKG+
Sbjct: 272 DDSESPPVK-----TKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYA 326
Query: 83 FVKYATLEAAGKAIEGMDGKV 103
F++Y T EAAG A++ M+GK+
Sbjct: 327 FLEYTTEEAAGTALKEMNGKI 347
>gi|212274941|ref|NP_001130982.1| hypothetical protein [Zea mays]
gi|194690622|gb|ACF79395.1| unknown [Zea mays]
gi|413951564|gb|AFW84213.1| hypothetical protein ZEAMMB73_909652 [Zea mays]
Length = 142
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
PP P + LFV+GLS + +L D FS+FG V +I+ + SG S+GFGFV ++
Sbjct: 38 PPGAPAPTSDSRLFVAGLSWSVDERSLTDAFSSFGTVTEVRIMYDKNSGRSRGFGFVHFS 97
Query: 88 TLEAAGKAIEGMDGKVSL 105
A A + MDGKV L
Sbjct: 98 NDNEAKCAKDAMDGKVML 115
>gi|20257711|gb|AAM16021.1| glycine-rich RNA binding protein [Zea mays]
Length = 150
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 16 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 75
Query: 101 GK 102
GK
Sbjct: 76 GK 77
>gi|108710322|gb|ABF98117.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 153
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L FS +GE++ +KI+ RE+G S+GFGFV +++ ++ AIEGM+
Sbjct: 11 FVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|50881454|gb|AAT85299.1| glycine-rich RNA-binding protein, putative [Oryza sativa Japonica
Group]
gi|108710320|gb|ABF98115.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
gi|154550663|gb|ABS83497.1| receptor-like serine threonine kinase [Oryza sativa Japonica Group]
gi|169244423|gb|ACA50485.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|215697732|dbj|BAG91726.1| unnamed protein product [Oryza sativa Japonica Group]
gi|306415943|gb|ADM86846.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
Length = 162
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L FS +GE++ +KI+ RE+G S+GFGFV +++ ++ AIEGM+
Sbjct: 11 FVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|409197759|ref|ZP_11226422.1| RNP-1 like RNA-binding protein [Marinilabilia salmonicolor JCM
21150]
Length = 121
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 40/64 (62%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+FV+ LS RT E L F FGEV AK++ RE+GYSK FGFV+ AA AIE
Sbjct: 27 NIFVAKLSSRTKSEDLEQMFGEFGEVTSAKVIMDRETGYSKRFGFVEMPDDSAANAAIEN 86
Query: 99 MDGK 102
+D K
Sbjct: 87 LDDK 90
>gi|304376936|gb|ACI70007.2| Cold-inducible RNA-binding protein [Salmo salar]
Length = 82
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS TT+E+L + F+ +G + +++ +E+G S+GFGFVKY E A A++GM
Sbjct: 7 LFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALDGM 66
Query: 100 DGK 102
+GK
Sbjct: 67 NGK 69
>gi|34851124|gb|AAL13082.1| putative glycine-rich RNA-binding protein [Prunus avium]
Length = 178
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T ++ L FS FGE++ +KI+ RE+G S+GFGFV ++ +A
Sbjct: 4 AEIEFRCFVGGLAWATDNDALERAFSPFGEIIESKIINDRETGRSRGFGFVTFSNEKAMR 63
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 64 DAIEGMNGQ 72
>gi|7024451|dbj|BAA92156.1| glycine-rich RNA-binding protein [Citrus unshiu]
Length = 167
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ TTD +L + FSA+G+++ +KI+ RE+G S+GFGFV + ++ AIEGM+
Sbjct: 11 FVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>gi|296087958|emb|CBI35241.3| unnamed protein product [Vitis vinifera]
Length = 315
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
+P + LFV+GLS T+++TLR F FGE+V KI+ + S SKG+ F++Y T
Sbjct: 215 NQPTNIKTKKLFVTGLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTE 274
Query: 90 EAAGKAIEGMDGKV 103
EAA A++ M+GK+
Sbjct: 275 EAASAALKEMNGKI 288
>gi|222623613|gb|EEE57745.1| hypothetical protein OsJ_08262 [Oryza sativa Japonica Group]
Length = 369
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 23 SSSLNPPQRPQAEPSTN-LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
S + QAE T LFV+GLS T+++TLR F FGE+V KI+ + S SKG+
Sbjct: 249 DDSFKSSEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGY 308
Query: 82 GFVKYATLEAAGKAIEGMDGKV 103
F++Y T EA G A++ M+G++
Sbjct: 309 AFIEYTTEEAGGAALKAMNGQI 330
>gi|294941928|ref|XP_002783310.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
gi|239895725|gb|EER15106.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
Length = 429
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 22 FSSSLNPPQRPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSK 79
F + +N PQ + P N+FV + T++ LRD FS+FG +V AK+V + +G S+
Sbjct: 313 FRNPINVHTAPQTKGPPGANVFVFWVPDAWTEDDLRDHFSSFGNIVSAKVVVDKHTGLSR 372
Query: 80 GFGFVKYATLEAAGKAIEGMDGKVS 104
G+GF+ Y ++AG+A+ M+G V+
Sbjct: 373 GYGFISYDNAQSAGRAVAEMNGFVA 397
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
T LFVSGL T +E LR F FG + + G + FV++A E A KAI
Sbjct: 132 DTKLFVSGLGPGTQEEELRTIFEPFGRINEVHV-----PGPHALYAFVRFAEKEDALKAI 186
Query: 97 EGMDGKVSL 105
++G+V++
Sbjct: 187 REVNGRVTV 195
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LFV GL + LR F +G V I++ R + S+G FV++ + + AI
Sbjct: 13 SVKLFVRGLPVHYPESDLRAVFEEYGMVEDVFILRDRSTMQSRGMAFVRFRDIPSGMAAI 72
Query: 97 EGMDGKVSLC 106
+ ++G LC
Sbjct: 73 KALNG-YRLC 81
>gi|221486340|gb|EEE24601.1| splicing factor, putative [Toxoplasma gondii GT1]
Length = 576
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++T+ DTFSAFG ++ AKI++ E+G S+GFGFV + T EA+ A+
Sbjct: 117 NVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAA 176
Query: 99 MDGK 102
M+G+
Sbjct: 177 MNGQ 180
>gi|221508124|gb|EEE33711.1| splicing factor, putative [Toxoplasma gondii VEG]
Length = 576
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++T+ DTFSAFG ++ AKI++ E+G S+GFGFV + T EA+ A+
Sbjct: 117 NVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAA 176
Query: 99 MDGK 102
M+G+
Sbjct: 177 MNGQ 180
>gi|380709246|gb|AEE42608.1| glycine-rich RNA-binding protein 1, partial [Chelidonium majus]
Length = 146
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D++L FS++ +V +KI+ RE+G+S+GFGFV +A +A IEGM+
Sbjct: 12 FVGGLAWATDDQSLEKAFSSYRGIVESKIINDRETGWSRGFGFVTFANEQAMKDVIEGMN 71
Query: 101 GK 102
G+
Sbjct: 72 GQ 73
>gi|115448473|ref|NP_001048016.1| Os02g0730800 [Oryza sativa Japonica Group]
gi|46390469|dbj|BAD15930.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|46390865|dbj|BAD16369.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|113537547|dbj|BAF09930.1| Os02g0730800 [Oryza sativa Japonica Group]
gi|218191513|gb|EEC73940.1| hypothetical protein OsI_08808 [Oryza sativa Indica Group]
Length = 399
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 23 SSSLNPPQRPQAEPSTN-LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
S + QAE T LFV+GLS T+++TLR F FGE+V KI+ + S SKG+
Sbjct: 279 DDSFKSSEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGY 338
Query: 82 GFVKYATLEAAGKAIEGMDGKV 103
F++Y T EA G A++ M+G++
Sbjct: 339 AFIEYTTEEAGGAALKAMNGQI 360
>gi|301310455|ref|ZP_07216394.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides sp.
20_3]
gi|423336704|ref|ZP_17314451.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
gi|300832029|gb|EFK62660.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides sp.
20_3]
gi|409240584|gb|EKN33362.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
Length = 123
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL++S LS +DE LR F+ +GE+ AK++ RE+G S+GFGFV+ + E A KAIE
Sbjct: 2 NLYISNLSYNISDEDLRQLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEE 61
Query: 99 M-----DGKV 103
+ DGKV
Sbjct: 62 LNQASYDGKV 71
>gi|294886537|ref|XP_002771747.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
gi|239875509|gb|EER03563.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
Length = 422
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 22 FSSSLNPPQRPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSK 79
F + +N PQ + P N+FV + T++ LRD FS+FG +V AK+V + +G S+
Sbjct: 306 FRNPINVHTAPQTKGPPGANVFVFSVPDAWTEDDLRDHFSSFGNIVSAKVVVDKHTGLSR 365
Query: 80 GFGFVKYATLEAAGKAIEGMDGKVS 104
G+GF+ Y ++AG+A+ M+G V+
Sbjct: 366 GYGFISYDNAQSAGRAVAEMNGFVA 390
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
T LFVSGL T +E LR F FG + + G + FV++A E A KAI
Sbjct: 132 DTKLFVSGLGPATQEEELRTIFEPFGRINEVHV-----PGPHALYAFVRFAEKEDALKAI 186
Query: 97 EGMDGKVSL 105
++G+V++
Sbjct: 187 REVNGRVTV 195
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LFV GL + LR F +G V I++ R + S+G FV++ + + AI
Sbjct: 13 SVKLFVRGLPVHYPESDLRAVFEEYGMVEDVFILRDRSTMQSRGMAFVRFRDIPSGMAAI 72
Query: 97 EGMDG 101
+ ++G
Sbjct: 73 KALNG 77
>gi|159164540|pdb|2FC8|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 102
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
S S P R Q PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFG
Sbjct: 3 SGSSGPNARSQ--PSKTLFVKGLSEDTTEETLKESFDG---SVRARIVTDRETGSSKGFG 57
Query: 83 FVKYATLEAAGKAIEGM-DGKVS 104
FV + + E A A E M DG++
Sbjct: 58 FVDFNSEEDAKAAKEAMEDGEID 80
>gi|342882418|gb|EGU83098.1| hypothetical protein FOXB_06359 [Fusarium oxysporum Fo5176]
Length = 113
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LFV GL+ TT +TLR FS FGEV A ++ RE+G S+GFGFV +++ E A AIE
Sbjct: 2 SKLFVGGLAWATTSDTLRAKFSEFGEVTDAIVMTDRETGRSRGFGFVTFSSQEEASAAIE 61
Query: 98 GMD 100
M+
Sbjct: 62 AMN 64
>gi|222629430|gb|EEE61562.1| hypothetical protein OsJ_15917 [Oryza sativa Japonica Group]
Length = 149
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 27 NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKY 86
+PP ++ L+VSGLS RTT+E+LR+ F FG++ +V R + +GF F+ Y
Sbjct: 56 HPPPSASHGAASRLYVSGLSFRTTEESLRNAFERFGQLTEVNLVMERVAKRPRGFAFLSY 115
Query: 87 ATLEAAGKAIEGMDGK 102
A+ E + A+EGM GK
Sbjct: 116 ASEEESKNAMEGMQGK 131
>gi|297793541|ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310490|gb|EFH40914.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 95
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 54/87 (62%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T LFVS LS TTD++LR F+ FG+++ A++++ +++ KGFGF+ + + + A A+
Sbjct: 6 TTQLFVSRLSAYTTDQSLRQLFAPFGQIIEARLIRDQQTQRPKGFGFITFESEDDAQNAL 65
Query: 97 EGMDGKVSLCMASFLHALARIINPFPI 123
+ ++GK+ F+ A + P I
Sbjct: 66 KALNGKIVNGRLIFVEAAKEVEAPITI 92
>gi|242823058|ref|XP_002488014.1| glycine-rich RNA-binding protein, putative [Talaromyces stipitatus
ATCC 10500]
gi|218712935|gb|EED12360.1| glycine-rich RNA-binding protein, putative [Talaromyces stipitatus
ATCC 10500]
Length = 134
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GL+ TTD+TLR F FG + A ++K R++ S+GFGFV++AT A AI+GM
Sbjct: 4 LFIGGLAWHTTDDTLRQGFEKFGTIEEAIVIKDRDTNRSRGFGFVRFATDAEADAAIDGM 63
Query: 100 -----DGKV 103
DG+V
Sbjct: 64 NNQEFDGRV 72
>gi|359482021|ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Vitis vinifera]
gi|297740158|emb|CBI30340.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
++ LFV GLS TT++ L + FS +G+VV AKIV R S SKGFGFV +A+ E A KA
Sbjct: 33 ASKLFVGGLSFYTTEKGLSEHFSQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQKAR 92
Query: 97 EGMDGK 102
MDGK
Sbjct: 93 TEMDGK 98
>gi|237833669|ref|XP_002366132.1| splicing factor, putative [Toxoplasma gondii ME49]
gi|211963796|gb|EEA98991.1| splicing factor, putative [Toxoplasma gondii ME49]
Length = 576
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++T+ DTFSAFG ++ AKI++ E+G S+GFGFV + T EA+ A+
Sbjct: 117 NVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAA 176
Query: 99 MDGK 102
M+G+
Sbjct: 177 MNGQ 180
>gi|259490527|ref|NP_001159310.1| uncharacterized protein LOC100304402 [Zea mays]
gi|223943329|gb|ACN25748.1| unknown [Zea mays]
gi|413938710|gb|AFW73261.1| chloroplast protein synthesis 4 [Zea mays]
Length = 398
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV+GLS T+++TLR F FGE+V KI+ R S SKG+ FV+Y T EA G A++ M
Sbjct: 301 LFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKAM 360
Query: 100 DGKV 103
+G++
Sbjct: 361 NGQI 364
>gi|413938711|gb|AFW73262.1| chloroplast protein synthesis 4 [Zea mays]
Length = 400
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV+GLS T+++TLR F FGE+V KI+ R S SKG+ FV+Y T EA G A++ M
Sbjct: 303 LFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKAM 362
Query: 100 DGKV 103
+G++
Sbjct: 363 NGQI 366
>gi|189306|gb|AAA59954.1| nucleolin [Homo sapiens]
Length = 707
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 22/110 (20%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 552 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 594
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG--MDG-KVSLCMA 108
V A+IV RE+G SKGFGFV + + E A +A+E +DG KV+L A
Sbjct: 595 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKEAMEDGEIDGNKVTLDWA 642
>gi|37906123|gb|AAP44766.1| nucleolin [Bos taurus]
Length = 203
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 57/104 (54%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG +P R Q PS LFV GLS+ TT+ETL+++F
Sbjct: 60 AIRLELQGPRG--------------SPNARSQ--PSKTLFVKGLSEDTTEETLKESFDG- 102
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
+ A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 103 --SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 144
>gi|21553495|gb|AAM62588.1| glycine-rich RNA-binding protein, putative [Arabidopsis thaliana]
Length = 152
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ +FV GLS T E L++ F +FG++V A +V RESG S+GFGFV Y ++E A A++
Sbjct: 33 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 92
Query: 98 GMDGK 102
M K
Sbjct: 93 AMQNK 97
>gi|449516497|ref|XP_004165283.1| PREDICTED: glycine-rich RNA-binding protein 2-like, partial
[Cucumis sativus]
Length = 100
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 7/76 (9%)
Query: 45 LSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVS 104
LS+ TTDE LR+ FS+FG++ AK+V R +G SKGF FV Y+T++ A KA E M+ K
Sbjct: 1 LSRLTTDEKLREAFSSFGQLADAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAK-- 58
Query: 105 LCMASFLHALARIINP 120
FL ++P
Sbjct: 59 -----FLDGWVIFVDP 69
>gi|218195435|gb|EEC77862.1| hypothetical protein OsI_17125 [Oryza sativa Indica Group]
Length = 152
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 27 NPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKY 86
+PP ++ L+VSGLS RTT+E+LR+ F FG++ +V R + +GF F+ Y
Sbjct: 59 HPPPSASHGAASRLYVSGLSFRTTEESLRNAFERFGQLTEVNLVMERVAKRPRGFAFLSY 118
Query: 87 ATLEAAGKAIEGMDGK 102
A+ E + A+EGM GK
Sbjct: 119 ASEEESKNAMEGMQGK 134
>gi|99029149|gb|ABF60862.1| GRSF [Lilium longiflorum]
Length = 207
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 15/96 (15%)
Query: 8 AAPRGLRRLFSTSPFSSSLNPPQRP-QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH 66
AAPRG R P+RP +++PS ++V L + D L FS G+V+
Sbjct: 105 AAPRGSR--------------PERPRESDPSLRVYVGNLPWQVDDSRLEQLFSEHGKVID 150
Query: 67 AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
A++V R+SG S+GFGFV AT E AI +DG+
Sbjct: 151 ARVVYDRQSGRSRGFGFVTLATREEVDDAIAALDGQ 186
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 52 ETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
E L + F G V A+++ +RE+ S+GFGFV +T+E A +A+E
Sbjct: 43 EKLANLFDKAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAERAVE 88
>gi|224104887|ref|XP_002313606.1| predicted protein [Populus trichocarpa]
gi|222850014|gb|EEE87561.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 10/90 (11%)
Query: 24 SSLNPPQRPQAEP----------STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHR 73
SSL +PQ P S +FV GLS +T++ + + FS FGEV+ AKIV +
Sbjct: 10 SSLKVFSQPQLYPQPLLFFSKGFSAKVFVKGLSFSSTEKKIAEAFSEFGEVIEAKIVMDK 69
Query: 74 ESGYSKGFGFVKYATLEAAGKAIEGMDGKV 103
KG+GFV +A +AA KA EGM+GK+
Sbjct: 70 ARKRPKGYGFVTFAKKDAAEKACEGMNGKL 99
>gi|2331133|gb|AAB66885.1| glycine-rich protein [Oryza sativa Japonica Group]
Length = 161
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T + +L FS +GE++ +KI+ RE+G S+GFGFV +++ +A AIEGM+
Sbjct: 11 FVGGLAWATDNRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|298528142|ref|ZP_07015546.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511794|gb|EFI35696.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 84
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL+V L TT+ LRD+F+ FGEV AKI++ RE+G S+GFGFV+ A +AIE
Sbjct: 2 TNLYVGNLPWSTTEAQLRDSFAEFGEVSSAKIIEDRETGRSRGFGFVEMEN--GADEAIE 59
Query: 98 GMDGK 102
++GK
Sbjct: 60 ALNGK 64
>gi|320164028|gb|EFW40927.1| splicing factor 3B subunit 4 [Capsaspora owczarzaki ATCC 30864]
Length = 283
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYAT 88
R + NLF+ L ++ L DTFSAFG ++H KI++ +++G +GFGFV +A+
Sbjct: 90 DRKDIDIGANLFIGNLDTEVDEKMLFDTFSAFGVILHTPKIMRDQQNGNPRGFGFVNFAS 149
Query: 89 LEAAGKAIEGMDGKVSLC 106
EA+ AIE M+G+ LC
Sbjct: 150 FEASDAAIEAMNGQY-LC 166
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+V L R D L + F G V H I K R SG +G+GFV+Y T E A
Sbjct: 15 YVGNLDDRVNDRLLWELFLQAGPVAHVFIPKDRVSGLQQGYGFVEYPTEEDA 66
>gi|223039621|ref|ZP_03609908.1| RNA-binding region RNP-1 [Campylobacter rectus RM3267]
gi|222879192|gb|EEF14286.1| RNA-binding region RNP-1 [Campylobacter rectus RM3267]
Length = 81
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++V LS R T+ L+DTF+ FGEV AKIVK R++ SKGFGFV+ A KAIE
Sbjct: 2 NIYVGNLSYRMTEAELKDTFAPFGEVKRAKIVKDRDTNRSKGFGFVEMENDADALKAIEA 61
Query: 99 MDGK 102
++ K
Sbjct: 62 LNNK 65
>gi|297793663|ref|XP_002864716.1| hypothetical protein ARALYDRAFT_358310 [Arabidopsis lyrata subsp.
lyrata]
gi|297310551|gb|EFH40975.1| hypothetical protein ARALYDRAFT_358310 [Arabidopsis lyrata subsp.
lyrata]
Length = 327
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 25 SLNPPQRPQA---EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
SL+ P QA S+ LF+ G++ +++LR+ F+ +GEVV +++ RE+G S+GF
Sbjct: 24 SLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVETRVILDRETGRSRGF 83
Query: 82 GFVKYATLEAAGKAIEGMDGK 102
GFV + + EAA AI+ +DG+
Sbjct: 84 GFVTFTSSEAASSAIQALDGR 104
>gi|15221825|ref|NP_173298.1| glycine-rich RNA-binding protein 6 [Arabidopsis thaliana]
gi|9795594|gb|AAF98412.1|AC026238_4 Similar to glycine-rich RNA-binding proteins [Arabidopsis thaliana]
gi|29029110|gb|AAO64934.1| At1g18630 [Arabidopsis thaliana]
gi|110743184|dbj|BAE99483.1| hypothetical protein [Arabidopsis thaliana]
gi|332191616|gb|AEE29737.1| glycine-rich RNA-binding protein 6 [Arabidopsis thaliana]
Length = 155
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ +FV GLS T E L++ F +FG++V A +V RESG S+GFGFV Y ++E A A++
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 98 GMDGK 102
M K
Sbjct: 96 AMQNK 100
>gi|255322500|ref|ZP_05363645.1| RNA-binding region RNP-1 [Campylobacter showae RM3277]
gi|255300408|gb|EET79680.1| RNA-binding region RNP-1 [Campylobacter showae RM3277]
Length = 81
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++V LS R T+ L+DTF+ FGEV AKIVK R++ SKGFGFV+ A KAIE
Sbjct: 2 NIYVGNLSYRMTEAELKDTFAPFGEVKRAKIVKDRDTNRSKGFGFVEIENDADALKAIEA 61
Query: 99 MDGK 102
++ K
Sbjct: 62 LNNK 65
>gi|30692258|ref|NP_849525.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|332661647|gb|AEE87047.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 105
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+E FV GL+ T DE L+ TFS FG+V+ +KI+ RESG S+GFGFV + +A
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 94 KAIEGMD 100
AIE M+
Sbjct: 62 DAIEEMN 68
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
++ + N+FV LS DE L+ F A GEVV A + R++G SKGFG+V ++T EAA
Sbjct: 386 NSDANCNIFVGKLSWNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAA 445
Query: 93 GKAIEGMDGK 102
KAI M+GK
Sbjct: 446 EKAIAEMNGK 455
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV +S ++ L +TF G++V ++ RE+G KGFG+V++ ++E A A +
Sbjct: 492 LFVGNVSFNANEDMLWETFGEHGDIVSVRLPTDRETGQMKGFGYVEFTSVENAKSAFNAL 551
Query: 100 DGK 102
+GK
Sbjct: 552 NGK 554
>gi|225430808|ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera]
Length = 373
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLFV L ++ L DTFSAFG +V + KI++ ++G S+GFGFV Y + EA+ AIE
Sbjct: 113 NLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIE 172
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 173 AMNGQY-LC 180
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+V L + T+E L + F G VV+ + K R + +G+GFV++ + E A AI+
Sbjct: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
>gi|357473251|ref|XP_003606910.1| Glycine-rich RNA binding protein [Medicago truncatula]
gi|355507965|gb|AES89107.1| Glycine-rich RNA binding protein [Medicago truncatula]
Length = 161
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T +E L FS +GE+V +KI+ RE+G S+GFGFV +A ++
Sbjct: 2 ADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 61
Query: 94 KAIEGMDGK 102
AIE M+G+
Sbjct: 62 DAIEAMNGQ 70
>gi|338762832|gb|AEI98619.1| hypothetical protein 111O18.6 [Coffea canephora]
Length = 368
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG +V + KI++ E+G S+GFGF+ Y + EA+ AIE
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIE 172
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 173 AMNGQY-LC 180
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
+V L + ++E L + F G VV+ + K R + +G+GFV++ + E A AI+ ++
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRSEEDADYAIKVLN 87
>gi|115529229|dbj|BAF34340.1| putative glycine-rich RNA-binding protein [Dianthus caryophyllus]
Length = 163
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GLS T D +L + F+ FGEV +KI+ RE+G S+GFGFV +A ++
Sbjct: 2 AEVEYRCFVGGLSWGTDDRSLAEAFNKFGEVTDSKIINDRETGRSRGFGFVTFANEQSMR 61
Query: 94 KAIEGMDGK 102
AI+ M+GK
Sbjct: 62 DAIDEMNGK 70
>gi|224130158|ref|XP_002328668.1| predicted protein [Populus trichocarpa]
gi|222838844|gb|EEE77195.1| predicted protein [Populus trichocarpa]
Length = 142
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ +F+ G+S +T D L++ F +G VV I+ R++G S+GFGFV Y + E A AI
Sbjct: 39 SSKIFIGGISFQTDDNGLKEAFDKYGNVVEGIIIMDRDTGRSRGFGFVTYTSSEEASSAI 98
Query: 97 EGMDGK 102
+ MDG+
Sbjct: 99 QAMDGQ 104
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NLFV GLS D+ L+ F FGEV+ A+++ R + SKGFG+V +A+ E A KA+E
Sbjct: 402 NLFVGGLSWNVDDDWLKKEFEKFGEVISARVITERGTERSKGFGYVDFASPEDARKAVEA 461
Query: 99 MDG 101
M G
Sbjct: 462 MAG 464
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 29 PQRPQAE-----------PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
P+RP E P+T LF+ L T +++ + FS +G++ ++ E+
Sbjct: 481 PERPPQEKRSFGQEELSAPTTTLFIGNLPFSATQDSVYEAFSEYGDINSVRLPTDPETER 540
Query: 78 SKGFGFVKYATLEAAGKAI 96
KGFG+V++AT EAA A+
Sbjct: 541 IKGFGYVEFATQEAATAAV 559
>gi|4704605|gb|AAD28176.1|AF109917_1 glycine-rich RNA-binding protein [Picea glauca]
Length = 155
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L++ FS +GEVV +KI+ RE+G S+GFGFV + ++ AI+ M+
Sbjct: 11 FVGGLAWSTDDRSLQEAFSPYGEVVESKIISDRETGRSRGFGFVTFNDEQSMRDAIDAMN 70
Query: 101 GKV 103
GK+
Sbjct: 71 GKM 73
>gi|388566786|ref|ZP_10153228.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
gi|388265964|gb|EIK91512.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
Length = 133
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
L+V L DE L+ FSAFG V AK++ RE+G SKGFGFV+ + A AI+
Sbjct: 3 NKLYVGNLPYTVRDEDLQQAFSAFGAVNSAKVMMERETGRSKGFGFVEMGSDSEAQSAIQ 62
Query: 98 GMDGKVSLCMASFLHALARIINPFP 122
GM+G+ SL S + AR + P P
Sbjct: 63 GMNGQ-SLGGRSLVVNEARPMEPRP 86
>gi|296205845|ref|XP_002749930.1| PREDICTED: uncharacterized protein LOC100395223 isoform 1
[Callithrix jacchus]
Length = 713
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 555 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 597
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 598 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 639
>gi|193788267|dbj|BAG53161.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 475 AIRLELQGPRG-------SPNAGS---------QPSKTLFVKGLSEDTTEETLKESFDG- 517
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 518 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 559
>gi|281349809|gb|EFB25393.1| hypothetical protein PANDA_005719 [Ailuropoda melanoleuca]
Length = 645
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG +P R Q PS LFV GLS+ TT+ETL+++F
Sbjct: 515 AIRLELQGPRG--------------SPNARSQ--PSKTLFVKGLSEDTTEETLKESFDG- 557
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 558 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 599
>gi|197098386|ref|NP_001127178.1| nucleolin [Pongo abelii]
gi|75070972|sp|Q5RF26.3|NUCL_PONAB RecName: Full=Nucleolin
gi|55725699|emb|CAH89631.1| hypothetical protein [Pongo abelii]
Length = 712
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 554 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 596
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 597 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 638
>gi|397502540|ref|XP_003821912.1| PREDICTED: nucleolin-like [Pan paniscus]
Length = 710
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 552 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 594
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 595 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 636
>gi|55956788|ref|NP_005372.2| nucleolin [Homo sapiens]
gi|90110781|sp|P19338.3|NUCL_HUMAN RecName: Full=Nucleolin; AltName: Full=Protein C23
gi|62988860|gb|AAY24247.1| unknown [Homo sapiens]
gi|119591367|gb|EAW70961.1| nucleolin, isoform CRA_b [Homo sapiens]
gi|119591369|gb|EAW70963.1| nucleolin, isoform CRA_b [Homo sapiens]
gi|168277892|dbj|BAG10924.1| nucleolin [synthetic construct]
Length = 710
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 552 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 594
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 595 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 636
>gi|388502672|gb|AFK39402.1| unknown [Medicago truncatula]
Length = 140
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS TT++TL D FS +G+VV AK++ R S SKG+GFV +A+ + A KAI M
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 100 DGK 102
+ K
Sbjct: 94 NEK 96
>gi|426338868|ref|XP_004033393.1| PREDICTED: nucleolin [Gorilla gorilla gorilla]
Length = 710
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 552 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 594
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 595 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 636
>gi|303668381|gb|ADM16300.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 121
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS TT+E+L + F+ +G + +++ +E+G S+GFGFVKY E A A++GM
Sbjct: 7 LFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALDGM 66
Query: 100 DGK 102
+GK
Sbjct: 67 NGK 69
>gi|402889645|ref|XP_003908119.1| PREDICTED: nucleolin isoform 2 [Papio anubis]
Length = 683
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 525 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 567
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 568 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 609
>gi|301764124|ref|XP_002917484.1| PREDICTED: nucleolin-like [Ailuropoda melanoleuca]
Length = 717
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 559 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 601
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 602 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 643
>gi|255535545|ref|YP_003095916.1| RNA-binding protein [Flavobacteriaceae bacterium 3519-10]
gi|255341741|gb|ACU07854.1| RNA-binding protein [Flavobacteriaceae bacterium 3519-10]
Length = 122
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+FVS ++ T +E+L+D FS FGEV AKI+ RE+G S+GFGFV+ + E AIE
Sbjct: 3 NIFVSNINYSTREESLQDLFSEFGEVSSAKIITDRETGRSRGFGFVEMSD-EDGKNAIEA 61
Query: 99 MDGK 102
++GK
Sbjct: 62 LNGK 65
>gi|224131664|ref|XP_002321147.1| predicted protein [Populus trichocarpa]
gi|222861920|gb|EEE99462.1| predicted protein [Populus trichocarpa]
Length = 120
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 35 EPSTN--LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
P+TN LFV+GLS +++L+D FS+FG+V I+ R SG S+GFGFV + + A
Sbjct: 13 NPATNNKLFVAGLSWSVDEKSLKDAFSSFGDVTEVNILYDRNSGRSRGFGFVSFCKEDEA 72
Query: 93 GKAIEGMDGKVSL 105
A + MDGK L
Sbjct: 73 VSAKDAMDGKALL 85
>gi|332815667|ref|XP_516145.3| PREDICTED: nucleolin [Pan troglodytes]
Length = 711
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 553 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 595
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 596 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 637
>gi|255550690|ref|XP_002516394.1| spliceosome associated protein, putative [Ricinus communis]
gi|223544492|gb|EEF46011.1| spliceosome associated protein, putative [Ricinus communis]
Length = 376
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG +V + KI++ E+G S+GFGF+ Y + +A+ AIE
Sbjct: 113 NLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFDASDAAIE 172
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 173 AMNGQY-LC 180
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
+V L + ++E L + F G VV+ + K R + +G+GFV++ + E A AI+ M+
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKIMN 87
>gi|403278071|ref|XP_003930653.1| PREDICTED: nucleolin-like [Saimiri boliviensis boliviensis]
Length = 713
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 555 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 597
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 598 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 639
>gi|410969636|ref|XP_003991299.1| PREDICTED: nucleolin [Felis catus]
Length = 715
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 557 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 599
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 600 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 641
>gi|297265320|ref|XP_001116949.2| PREDICTED: nucleolin-like [Macaca mulatta]
gi|75075722|sp|Q4R4J7.3|NUCL_MACFA RecName: Full=Nucleolin
gi|67967725|dbj|BAE00345.1| unnamed protein product [Macaca fascicularis]
gi|67971272|dbj|BAE01978.1| unnamed protein product [Macaca fascicularis]
Length = 711
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 553 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 595
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 596 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 637
>gi|402889643|ref|XP_003908118.1| PREDICTED: nucleolin isoform 1 [Papio anubis]
Length = 695
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 537 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 579
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 580 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 621
>gi|374721345|gb|AEZ68008.1| nucleolin [Chlorocebus aethiops]
Length = 712
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 554 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 596
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 597 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 638
>gi|345790650|ref|XP_850477.2| PREDICTED: nucleolin isoform 1 [Canis lupus familiaris]
Length = 715
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 557 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 599
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 600 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 641
>gi|26325114|dbj|BAC26311.1| unnamed protein product [Mus musculus]
Length = 707
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 564 RSQPSKTLFVKGLSENTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 620
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 621 KAAKEAMEDGEID 633
>gi|402889647|ref|XP_003908120.1| PREDICTED: nucleolin isoform 3 [Papio anubis]
Length = 634
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG +P R Q PS LFV GLS+ TT+ETL+++F
Sbjct: 476 AIRLELQGPRG--------------SPNARSQ--PSKTLFVKGLSEDTTEETLKESFDG- 518
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 519 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 560
>gi|544423|sp|Q99070.1|GRP2_SORBI RecName: Full=Glycine-rich RNA-binding protein 2
gi|21625|emb|CAA40862.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 168
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T +ETL F+ FG+V+ +K++ RE+G S+GFGFV +++ ++ AIE M+
Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|339501141|ref|YP_004699176.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
gi|338835490|gb|AEJ20668.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
Length = 116
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L+V LS T++++LR+ FS FG V AKI+ RE+G SKGFGFV+ +T E A AI G
Sbjct: 26 LYVGNLSYNTSEDSLRNLFSNFGSVASAKIIFDRETGNSKGFGFVEMSTDEEASAAIAGT 85
Query: 100 DGK 102
+G+
Sbjct: 86 NGR 88
>gi|355761078|gb|EHH61752.1| hypothetical protein EGM_19839, partial [Macaca fascicularis]
Length = 705
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 547 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 589
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 590 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 631
>gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 47/66 (71%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV GLS T + +L++ FS +G+V+ A+++ R++G S+GFGF+ + + E A A+
Sbjct: 39 SSKLFVGGLSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASAL 98
Query: 97 EGMDGK 102
+ MDG+
Sbjct: 99 QAMDGQ 104
>gi|15239505|ref|NP_200911.1| glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]
gi|9759450|dbj|BAB10366.1| unnamed protein product [Arabidopsis thaliana]
gi|16974556|gb|AAL31194.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|21928059|gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|225879144|dbj|BAH30642.1| hypothetical protein [Arabidopsis thaliana]
gi|332010031|gb|AED97414.1| glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]
Length = 309
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 25 SLNPPQRPQA---EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
SL+ P QA S+ LF+ G++ +++LR+ F+ +GEVV +++ RE+G S+GF
Sbjct: 24 SLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGF 83
Query: 82 GFVKYATLEAAGKAIEGMDGK 102
GFV + + EAA AI+ +DG+
Sbjct: 84 GFVTFTSSEAASSAIQALDGR 104
>gi|354502803|ref|XP_003513471.1| PREDICTED: nucleolin [Cricetulus griseus]
Length = 762
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 616 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 672
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 673 KAAKEAMEDGEID 685
>gi|149016335|gb|EDL75581.1| nucleolin, isoform CRA_e [Rattus norvegicus]
Length = 505
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 362 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 418
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 419 KAAKEAMEDGEID 431
>gi|164427760|ref|XP_965121.2| hypothetical protein NCU02736 [Neurospora crassa OR74A]
gi|157071873|gb|EAA35885.2| predicted protein [Neurospora crassa OR74A]
Length = 200
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 38/63 (60%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS T D LR F FG V A +VK R++G S+GFGFV+Y A AI M
Sbjct: 4 LFVGGLSWNTDDNMLRAKFEEFGAVEEAVVVKDRDTGRSRGFGFVRYGNDADAENAIANM 63
Query: 100 DGK 102
DG+
Sbjct: 64 DGQ 66
>gi|356532261|ref|XP_003534692.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 365
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG +V + KI++ ++G S+GFGF+ Y + EA+ AIE
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 172
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 173 AMNGQY-LC 180
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
+V L + ++E L + F G VV+ + K R + +G+GFV++ + E A AI+ ++
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
>gi|357473273|ref|XP_003606921.1| Glycine-rich RNA binding protein [Medicago truncatula]
gi|355507976|gb|AES89118.1| Glycine-rich RNA binding protein [Medicago truncatula]
Length = 164
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T E L FS +GE++ +KI+ RE+G S+GFGFV +A ++
Sbjct: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 64 DAIEGMNGQ 72
>gi|148708274|gb|EDL40221.1| nucleolin, isoform CRA_b [Mus musculus]
Length = 488
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 348 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 404
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 405 KAAKEAMEDGEID 417
>gi|226222462|gb|ACO38649.1| nucleolin-like protein [Rattus norvegicus]
Length = 569
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 426 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 482
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 483 KTAKEAMEDGEID 495
>gi|149016333|gb|EDL75579.1| nucleolin, isoform CRA_d [Rattus norvegicus]
gi|149016334|gb|EDL75580.1| nucleolin, isoform CRA_d [Rattus norvegicus]
Length = 496
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 353 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 409
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 410 KAAKEAMEDGEID 422
>gi|387050|gb|AAA36966.1| nucleolin, C23, partial [Cricetulus griseus]
Length = 679
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 532 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 588
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 589 KAAKEAMEDGEID 601
>gi|149016331|gb|EDL75577.1| nucleolin, isoform CRA_b [Rattus norvegicus]
Length = 698
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 555 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 611
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 612 KAAKEAMEDGEID 624
>gi|148708273|gb|EDL40220.1| nucleolin, isoform CRA_a [Mus musculus]
Length = 537
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 394 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 450
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 451 KAAKEAMEDGEID 463
>gi|392578419|gb|EIW71547.1| hypothetical protein TREMEDRAFT_56482 [Tremella mesenterica DSM
1558]
Length = 223
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 44/61 (72%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V LS TTD+TLRD F FG+V+ + ++K RE+G S+GFGFV ++T E A +I+ M
Sbjct: 6 VYVGNLSWNTTDDTLRDAFMQFGQVLDSIVMKDRETGRSRGFGFVTFSTAEEAEISIQQM 65
Query: 100 D 100
+
Sbjct: 66 N 66
>gi|26341628|dbj|BAC34476.1| unnamed protein product [Mus musculus]
Length = 550
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 407 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 463
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 464 KAAKEAMEDGEID 476
>gi|168035555|ref|XP_001770275.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678492|gb|EDQ64950.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 106
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
FV GL+ TTD +L + F FGEVV K++ RE+G S+GFGFV +A + +AI+ M
Sbjct: 4 CFVGGLAWATTDGSLEEAFRPFGEVVQCKVITDRETGRSRGFGFVTFADENSMNEAIKDM 63
Query: 100 DGK 102
+GK
Sbjct: 64 NGK 66
>gi|145347251|ref|XP_001418087.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578315|gb|ABO96380.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 319
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAG 93
E NLF+ L ++ L DTFSAFG V++ KI++ ++G SKGFGFV Y + EA+
Sbjct: 112 EVGANLFIGNLDPDIDEKLLYDTFSAFGVVINTPKIMRDPDNGASKGFGFVAYDSFEASD 171
Query: 94 KAIEGMDGKVSLC 106
AIE M+G+ LC
Sbjct: 172 AAIEAMNGQF-LC 183
>gi|20257693|gb|AAM16012.1| glycine-rich RNA binding protein [Zea mays]
Length = 153
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++ +A AIEGM+
Sbjct: 18 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXDAMRSAIEGMN 77
Query: 101 GK 102
GK
Sbjct: 78 GK 79
>gi|2267593|gb|AAB63589.1| glycine-rich RNA-binding protein [Oryza sativa Indica Group]
Length = 165
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T + +L FS +GE++ +KI+ RE+G S+GFGFV +++ +A AIEGM
Sbjct: 11 FVGGLAWATDNRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMS 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|262196624|ref|YP_003267833.1| RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
gi|262079971|gb|ACY15940.1| RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Length = 125
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S +FV GLS T D +LR F FG V AK++ R++G S+GFGFV +A A AI
Sbjct: 2 SNKIFVGGLSWDTDDSSLRAAFERFGAVTEAKVITDRDTGRSRGFGFVTFAESGQAAAAI 61
Query: 97 EGMDG 101
E MDG
Sbjct: 62 EEMDG 66
>gi|26327461|dbj|BAC27474.1| unnamed protein product [Mus musculus]
Length = 707
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 564 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 620
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 621 KAAKEAMEDGEID 633
>gi|84875537|ref|NP_035010.3| nucleolin [Mus musculus]
gi|128843|sp|P09405.2|NUCL_MOUSE RecName: Full=Nucleolin; AltName: Full=Protein C23
gi|12802527|gb|AAK07920.1|AF318184_1 nucleolin [Mus musculus]
gi|53454|emb|CAA30538.1| nucleolin [Mus musculus]
gi|26350437|dbj|BAC38858.1| unnamed protein product [Mus musculus]
gi|74179984|dbj|BAE36542.1| unnamed protein product [Mus musculus]
gi|74194436|dbj|BAE37270.1| unnamed protein product [Mus musculus]
gi|74201341|dbj|BAE26119.1| unnamed protein product [Mus musculus]
gi|148708278|gb|EDL40225.1| nucleolin, isoform CRA_f [Mus musculus]
Length = 707
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 564 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 620
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 621 KAAKEAMEDGEID 633
>gi|13529464|gb|AAH05460.1| Nucleolin [Mus musculus]
Length = 707
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 564 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 620
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 621 KAAKEAMEDGEID 633
>gi|74177681|dbj|BAE38940.1| unnamed protein product [Mus musculus]
Length = 707
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 564 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 620
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 621 KAAKEAMEDGEID 633
>gi|319902685|ref|YP_004162413.1| RNP-1 like RNA-binding protein [Bacteroides helcogenes P 36-108]
gi|319417716|gb|ADV44827.1| RNP-1 like RNA-binding protein [Bacteroides helcogenes P 36-108]
Length = 102
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++++GL+ TTD L D FS +GEV A+++ RE+G S+GF FV+ EAA KAI+
Sbjct: 2 NIYIAGLNFSTTDADLNDLFSEYGEVSSARVITDRETGRSRGFAFVEMPDDEAAQKAIDE 61
Query: 99 MDG 101
++G
Sbjct: 62 LNG 64
>gi|74214426|dbj|BAE40448.1| unnamed protein product [Mus musculus]
gi|74219790|dbj|BAE40485.1| unnamed protein product [Mus musculus]
Length = 707
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 564 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 620
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 621 KAAKEAMEDGEID 633
>gi|297844820|ref|XP_002890291.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336133|gb|EFH66550.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 158
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LFV GLS T E L++ F +FG++V A +V RESG S+GFGFV Y ++E A A++
Sbjct: 36 SKLFVGGLSPATDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEDANNAMQ 95
Query: 98 GMDGK 102
M K
Sbjct: 96 CMHNK 100
>gi|148708277|gb|EDL40224.1| nucleolin, isoform CRA_e [Mus musculus]
Length = 706
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 563 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 619
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 620 KAAKEAMEDGEID 632
>gi|128844|sp|P13383.3|NUCL_RAT RecName: Full=Nucleolin; AltName: Full=Protein C23
gi|205792|gb|AAA41732.1| nucleolin [Rattus norvegicus]
Length = 713
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 570 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 626
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 627 KAAKEAMEDGEID 639
>gi|128842|sp|P08199.2|NUCL_MESAU RecName: Full=Nucleolin; AltName: Full=Protein C23
Length = 714
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 567 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 623
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 624 KAAKEAMEDGEID 636
>gi|333993552|ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
gi|333734416|gb|AEF80365.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
Length = 100
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L+V LS +TT++ LR+ FS FG V +KI+ RESG SKGFGF++ +T E A AI G
Sbjct: 5 LYVGNLSYQTTEDGLRNLFSQFGNVTSSKIIFDRESGSSKGFGFIEMSTDEEAAAAITGT 64
Query: 100 DG 101
+G
Sbjct: 65 NG 66
>gi|219885617|gb|ACL53183.1| unknown [Zea mays]
Length = 275
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 15 RLFSTSPFSSSLNPPQRPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
RL + + SS +RPQ + P+ +V L + D L FS GEVV AK+V
Sbjct: 177 RLLNVNRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYD 236
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110
RE+G S+GFGFV + E AI +DG+V+ A F
Sbjct: 237 RETGRSRGFGFVSMVSKEELNDAISALDGQVNWTAALF 274
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 24 SSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
+++ PP+ + ++V L E L F G V A+++ +RE+G S+GFGF
Sbjct: 100 AAVEPPEEAK------VYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGF 153
Query: 84 VKYATLEAAGKAIE 97
V +T+E A KAIE
Sbjct: 154 VTMSTVEEADKAIE 167
>gi|161760644|ref|NP_036881.2| nucleolin [Rattus norvegicus]
gi|55250726|gb|AAH85751.1| Nucleolin [Rattus norvegicus]
gi|149016332|gb|EDL75578.1| nucleolin, isoform CRA_c [Rattus norvegicus]
Length = 714
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 571 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 627
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 628 KAAKEAMEDGEID 640
>gi|31455187|gb|AAH06494.3| NCL protein [Homo sapiens]
gi|31455191|gb|AAH06516.3| NCL protein [Homo sapiens]
gi|31455242|gb|AAH02343.3| NCL protein [Homo sapiens]
Length = 482
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 324 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 366
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 367 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 408
>gi|342320413|gb|EGU12353.1| Splicing factor 3b subunit 4 [Rhodotorula glutinis ATCC 204091]
Length = 317
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH-AKIVKHRESGYSKGFGFVKYAT 88
R Q + NLF+ L + L DTF+AFG +V AKI + +G SKGFGFV Y +
Sbjct: 92 DRKQLDIGANLFIGNLDPNIDERMLYDTFTAFGTLVQPAKISRDVGTGASKGFGFVSYDS 151
Query: 89 LEAAGKAIEGMDGK 102
EAA AIE M+G+
Sbjct: 152 FEAADAAIESMNGQ 165
>gi|297620951|ref|YP_003709088.1| RNA-binding protein [Waddlia chondrophila WSU 86-1044]
gi|297376252|gb|ADI38082.1| RNA-binding protein [Waddlia chondrophila WSU 86-1044]
gi|337293226|emb|CCB91217.1| putative RNA-binding protein rbpA [Waddlia chondrophila 2032/99]
Length = 92
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 46/62 (74%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L+V LS R +++ +D F++FGEV+ AKI+ R +G SKGFGFV++A EAA +AI+ +
Sbjct: 3 LYVGNLSYRVSEDQFKDYFASFGEVLSAKIITDRFTGQSKGFGFVEFADKEAAEEAIKEL 62
Query: 100 DG 101
+G
Sbjct: 63 NG 64
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV L TDE LR F FG V I K E G SKGFGFV Y T E A KA+E
Sbjct: 220 NNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKD-EDGKSKGFGFVCYETPEDASKAVE 278
Query: 98 GMDGK 102
+DGK
Sbjct: 279 ELDGK 283
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K LRDTF+ FG +V AK+ + G SKG+GF+++ T AA +AIE
Sbjct: 132 NIFIKNLDKDIDTVALRDTFAQFGNIVSAKVATDGQ-GNSKGYGFIQFDTEAAAKEAIEK 190
Query: 99 MDG 101
++G
Sbjct: 191 VNG 193
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL++ L DETLR+ F FG + ++++ SG S+G FV +++ E A +A+
Sbjct: 325 NLYIKNLEDGADDETLRELFKEFGTITSCRVMRD-ASGVSRGSAFVAFSSPEEATRAVTE 383
Query: 99 MDGKV 103
++GK+
Sbjct: 384 LNGKM 388
>gi|303275187|ref|XP_003056892.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461244|gb|EEH58537.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 302
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLFV L ++ L DTFSAFG V+ KI++ +SG S+GFGFV Y + EAA AIE
Sbjct: 96 NLFVGNLDSELDEKLLYDTFSAFGVVITTPKIMRDPDSGNSRGFGFVSYDSFEAADAAIE 155
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 156 AMNGQF-LC 163
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
++V L T+E L + F G VV+ + K R S +G+GFV++A E A AI+
Sbjct: 10 IYVGNLDLACTEEILWEVFVQAGPVVNVYVPKDRVSNAHQGYGFVEFANEEDADYAIK 67
>gi|387047|gb|AAA36961.1| nucleolin, partial [Cricetus cricetus]
Length = 192
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 45 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 101
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 102 KAAKEAMEDGEID 114
>gi|194211413|ref|XP_001495211.2| PREDICTED: nucleolin [Equus caballus]
Length = 705
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 547 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 589
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
+ A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 590 --SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 631
>gi|212546539|ref|XP_002153423.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
gi|210064943|gb|EEA19038.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
Length = 135
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GL+ TTD+TLR F FG + A ++K R++ S+GFGFV+++T A AIEGM
Sbjct: 4 LFIGGLAWHTTDDTLRSGFEKFGTIEEAIVIKDRDTNRSRGFGFVRFSTDAEADAAIEGM 63
Query: 100 -----DGKV 103
DG+V
Sbjct: 64 NNQDFDGRV 72
>gi|168038795|ref|XP_001771885.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676836|gb|EDQ63314.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 157
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LF+ GL+ T + TLRD F +FG V KI+ R++G S+GFGFV + + + A A+
Sbjct: 44 SSKLFIGGLAWATDENTLRDAFGSFGTVTDVKIILDRDTGRSRGFGFVNFTSPQEAEVAL 103
Query: 97 EGMDGK 102
+ MDG+
Sbjct: 104 QEMDGR 109
>gi|150007582|ref|YP_001302325.1| RNA-binding protein rbpA [Parabacteroides distasonis ATCC 8503]
gi|255013892|ref|ZP_05286018.1| putative RNA-binding protein rbpA [Bacteroides sp. 2_1_7]
gi|298375526|ref|ZP_06985483.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides sp.
3_1_19]
gi|410101874|ref|ZP_11296802.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
gi|423331931|ref|ZP_17309715.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|149936006|gb|ABR42703.1| putative RNA-binding protein rbpA [Parabacteroides distasonis ATCC
8503]
gi|298268026|gb|EFI09682.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides sp.
3_1_19]
gi|409229772|gb|EKN22644.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|409239672|gb|EKN32456.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
Length = 123
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL++S LS +DE LR F+ +GE+ AK++ RE+G S+GFGFV+ + E A KAIE
Sbjct: 2 NLYISNLSYNISDEDLRLLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEE 61
Query: 99 M-----DGKV 103
+ DGKV
Sbjct: 62 LNQASYDGKV 71
>gi|21388660|dbj|BAC00786.1| glycine-rich RNA-binding protein [Physcomitrella patens]
Length = 178
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
FV GL+ TTD +L + F FGEVV K++ RE+G S+GFGFV +A + +AI+ M
Sbjct: 7 CFVGGLAWATTDGSLEEAFRPFGEVVQCKVITDRETGRSRGFGFVTFADENSMNEAIKDM 66
Query: 100 DGK 102
+GK
Sbjct: 67 NGK 69
>gi|336371226|gb|EGN99565.1| hypothetical protein SERLA73DRAFT_159820 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 8/80 (10%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST ++V LS TTD+TLR+ FS +G+VV + +++ RE+G S+GFGFV +++ + A AI
Sbjct: 2 STKVYVGNLSWSTTDDTLREAFSEYGQVVDSIVMRDRETGRSRGFGFVTFSSEQEAEAAI 61
Query: 97 -----EGMDG---KVSLCMA 108
+ +DG KV+L A
Sbjct: 62 NSLHEQDLDGRRIKVNLANA 81
>gi|329960883|ref|ZP_08299162.1| hypothetical protein HMPREF9446_00723 [Bacteroides fluxus YIT
12057]
gi|328532169|gb|EGF58973.1| hypothetical protein HMPREF9446_00723 [Bacteroides fluxus YIT
12057]
Length = 101
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 45/63 (71%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++++GL+ TTD L D FS +GEV A+++ RE+G S+GFGFV+ + AA KAI+
Sbjct: 2 NIYIAGLNFSTTDADLNDLFSEYGEVSSARVITDRETGRSRGFGFVEMSDDTAAQKAIDE 61
Query: 99 MDG 101
++G
Sbjct: 62 LNG 64
>gi|221221302|gb|ACM09312.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 131
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS TT+++L + FS +G + ++ RE+G +GFGFVKY E A A+EGM
Sbjct: 7 LFVGGLSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAKDAMEGM 66
Query: 100 DGK 102
+G+
Sbjct: 67 NGQ 69
>gi|440913256|gb|ELR62731.1| Nucleolin, partial [Bos grunniens mutus]
Length = 714
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 556 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 598
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
+ A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 599 --SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 640
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S L +S LS T+ETL++ F + H K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct: 489 SKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 544
>gi|357462205|ref|XP_003601384.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355490432|gb|AES71635.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 135
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
LFV GLS +++L+D FS+FG+V +IV ++SG ++GFGFV ++ +AA A +
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKD 95
Query: 98 GMDGKVSL 105
MDGK L
Sbjct: 96 AMDGKALL 103
>gi|426221705|ref|XP_004023200.1| PREDICTED: LOW QUALITY PROTEIN: nucleolin [Ovis aries]
Length = 724
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 566 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 608
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
+ A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 609 --SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 650
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S L +S LS T+ETL++ F + H K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct: 499 SKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 554
>gi|260804435|ref|XP_002597093.1| hypothetical protein BRAFLDRAFT_215789 [Branchiostoma floridae]
gi|229282356|gb|EEN53105.1| hypothetical protein BRAFLDRAFT_215789 [Branchiostoma floridae]
Length = 113
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD++LR F FGE+ A ++ R++G S+G+GFV AT EAA KA +
Sbjct: 8 TKIFVGGLPYHTTDDSLRSFFQTFGEIEEAVVITDRQTGKSRGYGFVTMATREAAEKACK 67
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + +++ A R P
Sbjct: 68 DPNPIIDGRKANVNLAYIGAKPRNTQP 94
>gi|2645699|gb|AAC61787.1| glycine-rich RNA-binding protein [Euphorbia esula]
Length = 165
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 45/62 (72%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ TTD++L++ FS +GE++ +KI+ RE+G S+GFGFV + ++ AI+GM+
Sbjct: 10 FVGGLAWATTDQSLQEAFSPYGEILDSKIINDRETGRSRGFGFVTFNNEKSMRDAIQGMN 69
Query: 101 GK 102
+
Sbjct: 70 SQ 71
>gi|409197867|ref|ZP_11226530.1| RNP-1 like RNA-binding protein [Marinilabilia salmonicolor JCM
21150]
Length = 99
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NLFV+ LS TT E L D F+ +GEVV AK++ RE+G SK FGFV+ +AA KAI+
Sbjct: 2 NLFVAKLSDATTSEDLNDLFAEYGEVVSAKVIMDRETGSSKRFGFVEMKEDDAAQKAIKD 61
Query: 99 MD 100
++
Sbjct: 62 LN 63
>gi|331284195|ref|NP_001193589.1| nucleolin [Bos taurus]
gi|296490214|tpg|DAA32327.1| TPA: nucleolin [Bos taurus]
Length = 720
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 562 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 604
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
+ A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 605 --SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 646
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S L +S LS T+ETL++ F + H K+ ++ ++G SKG+ F+++A+ E A +A+
Sbjct: 495 SKTLVLSNLSYSATEETLQEVFE---KATHIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 550
>gi|47229392|emb|CAF99380.1| unnamed protein product [Tetraodon nigroviridis]
Length = 278
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A R++ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRVMQP 97
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 33 QAEPST------NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKY 86
Q +PS N+FV L + ++ L DTFS FG ++ K+V RE+G SKG+G+V Y
Sbjct: 90 QRDPSVRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKVVCDRETGLSKGYGYVHY 149
Query: 87 ATLEAAGKAIEGMDG 101
T EAA AI+ +DG
Sbjct: 150 ETNEAAASAIDKLDG 164
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L TD+ LRD F G + AKI++ ++ S+GFGFV ++T E A +A+
Sbjct: 353 NLYVKNLDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSRGFGFVCFSTPEDATRAVNE 412
Query: 99 MDGKV 103
M GK+
Sbjct: 413 MSGKI 417
>gi|6911146|gb|AAF31404.1|AF200323_1 putative glycine-rich RNA-binding protein 2 [Catharanthus roseus]
Length = 160
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ TTD++L + FS +GEV+ +K++ RE+G S+GFGFV + ++ AI GM+
Sbjct: 11 FVGGLAWATTDQSLSEAFSQYGEVLESKVINDRETGRSRGFGFVTFGDEKSMKDAIVGMN 70
Query: 101 GKV 103
G+
Sbjct: 71 GQT 73
>gi|242055771|ref|XP_002457031.1| hypothetical protein SORBIDRAFT_03g047450 [Sorghum bicolor]
gi|241929006|gb|EES02151.1| hypothetical protein SORBIDRAFT_03g047450 [Sorghum bicolor]
Length = 146
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 45/65 (69%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NLF+ GLS T + L+D FS +G+V+ +++ H +G SKGFGFVK+++ A A++
Sbjct: 60 NLFIGGLSYDTNETALKDAFSQYGDVIAVRVICHPTTGKSKGFGFVKFSSENQAAAALQK 119
Query: 99 MDGKV 103
++G+V
Sbjct: 120 LNGQV 124
>gi|20257707|gb|AAM16019.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++ +A AIEGM+
Sbjct: 20 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXEDAMRSAIEGMN 79
Query: 101 GK 102
GK
Sbjct: 80 GK 81
>gi|260825257|ref|XP_002607583.1| hypothetical protein BRAFLDRAFT_71461 [Branchiostoma floridae]
gi|229292931|gb|EEN63593.1| hypothetical protein BRAFLDRAFT_71461 [Branchiostoma floridae]
Length = 183
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+ EP LFV GLS TT E L TFS +GE+ K++ RE+G S+GFGFV +A A
Sbjct: 4 EKEPG-KLFVGGLSWDTTSEGLESTFSEYGEITDCKVITDRETGRSRGFGFVTFANDSDA 62
Query: 93 GKAIEGMDG 101
A + MDG
Sbjct: 63 ANAKKCMDG 71
>gi|213510736|ref|NP_001133148.1| cold inducible RNA binding protein [Salmo salar]
gi|197632151|gb|ACH70799.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219968|gb|ACM08645.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|221221054|gb|ACM09188.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 154
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS TT+++L + FS +G + ++ RE+G +GFGFVKY E A A+EGM
Sbjct: 7 LFVGGLSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAKDAMEGM 66
Query: 100 DGK 102
+G+
Sbjct: 67 NGQ 69
>gi|297830792|ref|XP_002883278.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297329118|gb|EFH59537.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF++GLS T+++TLR F FGE+V KI+ + S SKG+ F++Y T EAA A++ M
Sbjct: 286 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAASAALKEM 345
Query: 100 DGKV 103
+GK+
Sbjct: 346 NGKI 349
>gi|116790981|gb|ABK25812.1| unknown [Picea sitchensis]
Length = 166
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S+ +FV GLS D+TLR++F+ FG+V+ AKI+ RE+G S+GFGFV +A+ + A A
Sbjct: 38 SSKVFVGGLSYGVDDQTLRESFATFGDVMEAKIINDRETGRSRGFGFVTFASPDEANAA 96
>gi|195621182|gb|ACG32421.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 146
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV L+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T +A AIEGM+
Sbjct: 11 FVGXLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|357460829|ref|XP_003600696.1| Splicing factor 3B subunit [Medicago truncatula]
gi|355489744|gb|AES70947.1| Splicing factor 3B subunit [Medicago truncatula]
Length = 379
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG +V + KI++ ++G S+GFGF+ Y + EA+ AIE
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 172
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 173 AMNGQY-LC 180
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+V L + ++E L + F G VV+ + K R + +G+GFV++ + E A AI+
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIK 84
>gi|224071499|ref|XP_002303489.1| predicted protein [Populus trichocarpa]
gi|222840921|gb|EEE78468.1| predicted protein [Populus trichocarpa]
Length = 794
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
+P+ TNL++ L D+ L FS+FGE+V AK++K R +G SKG+GFVKY ++
Sbjct: 496 KPKEYDDTNLYIGYLPPNLDDDGLIGLFSSFGEIVMAKVIKDRITGLSKGYGFVKYCDVQ 555
Query: 91 AAGKAIEGMDG 101
A AI M+G
Sbjct: 556 MANNAIASMNG 566
>gi|452820612|gb|EME27652.1| splicing factor 3B subunit 4 [Galdieria sulphuraria]
Length = 265
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLFV LS+ ++ L DTFSAFG ++ I++ E+G SKG+GF+K+ + EA+ AIE
Sbjct: 111 NLFVGNLSQEVDEKLLYDTFSAFGAIIETPHIMRDPETGESKGYGFIKFDSFEASDAAIE 170
Query: 98 GMDGK 102
M+G+
Sbjct: 171 TMNGQ 175
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 17 FSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESG 76
F T+ F + P +R Q L+V L +R ++E L + G V H I + R +G
Sbjct: 5 FGTTNFYQASQPAERNQ---EATLYVGNLDERVSEELLWELMVQVGPVKHVYIPRDRITG 61
Query: 77 YSKGFGFVKY 86
++G+GFV++
Sbjct: 62 QTQGYGFVEF 71
>gi|356508388|ref|XP_003522939.1| PREDICTED: uncharacterized protein LOC100806292 [Glycine max]
Length = 185
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T + L FS +GE+V +K++ RE+G S+GFGFV +A+ +A AIEGM+
Sbjct: 11 FVGGLAWATDSDALEKAFSHYGEIVESKVIIDRETGRSRGFGFVTFASEQAMKDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 15 RLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSAFGEVV 65
R T FS P R Q +PS N+FV L++ ++ L DTFS FG ++
Sbjct: 95 RAMDTMNFSMIKGKPCRIMWSQRDPSLRRSGVGNIFVKNLNEAIDNKQLYDTFSLFGNIL 154
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
K+V RE G S G+G+V Y T EAA AIE +DG
Sbjct: 155 SCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDG 190
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L TD+ LRD F+ G + A+++K + G S+GFGFV Y+T E + +A+
Sbjct: 328 NLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNE 387
Query: 99 MDGKV 103
M+GK+
Sbjct: 388 MNGKL 392
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
RP + TN ++ + D L F+ FGEV+ A V ++ + GFGF+ +A E
Sbjct: 209 RPDIDSWTNCYIKNVPYEWDDARLNQEFAQFGEVLSAT-VSREDTNQTLGFGFINFAEHE 267
Query: 91 AAGKAIEGMDGK 102
+A A+E ++GK
Sbjct: 268 SAVAAVEALNGK 279
>gi|449507320|ref|XP_004162998.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 139
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T +L FS +GE+V AKIV RE+G S+GFGFV + EA AIE M+
Sbjct: 11 FVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMN 70
Query: 101 GKV 103
G +
Sbjct: 71 GHI 73
>gi|449462238|ref|XP_004148848.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
gi|449507318|ref|XP_004162997.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 141
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T +L FS +GE+V AKIV RE+G S+GFGFV + EA AIE M+
Sbjct: 11 FVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMN 70
Query: 101 GKV 103
G +
Sbjct: 71 GHI 73
>gi|449462236|ref|XP_004148847.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
gi|449507315|ref|XP_004162996.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 144
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T +L FS +GE+V AKIV RE+G S+GFGFV + EA AIE M+
Sbjct: 11 FVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMN 70
Query: 101 GKV 103
G +
Sbjct: 71 GHI 73
>gi|449462234|ref|XP_004148846.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 156
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T +L FS +GE+V AKIV RE+G S+GFGFV + EA AIE M+
Sbjct: 11 FVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMN 70
Query: 101 GKV 103
G +
Sbjct: 71 GHI 73
>gi|449462232|ref|XP_004148845.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
gi|449507311|ref|XP_004162995.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 171
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T +L FS +GE+V AKIV RE+G S+GFGFV + EA AIE M+
Sbjct: 11 FVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMN 70
Query: 101 GKV 103
G +
Sbjct: 71 GHI 73
>gi|387169546|gb|AFJ66205.1| hypothetical protein 34G24.3 [Capsella rubella]
Length = 806
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 23 SSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFG 82
S+ PP + E TNL++ L D+ L + FS+FGE+V AK++K R +G SK +G
Sbjct: 466 STPSKPPSKEYDE--TNLYIGFLPPMLDDDGLINLFSSFGEIVMAKVIKDRVTGLSKTYG 523
Query: 83 FVKYATLEAAGKAIEGMDG 101
FVKYA ++ A A++ M+G
Sbjct: 524 FVKYADVQMANTAVQAMNG 542
>gi|145506438|ref|XP_001439180.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406363|emb|CAK71783.1| unnamed protein product [Paramecium tetraurelia]
Length = 386
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 7 VAAPRGLRRLFSTSPFSSSLNP-PQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
+ +P G + + + + + L + P NLFV L D L D FS++G V+
Sbjct: 250 IYSPDGSKEIITKEKYLNDLATFNSKKTGPPGANLFVFHLPNEHKDSDLMDLFSSYGNVI 309
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV 103
A+++ ++G SKGFGFV + E+A KA E MDG +
Sbjct: 310 SARVMTDPKTGKSKGFGFVSFDKQESAQKAKEAMDGHL 347
>gi|312282683|dbj|BAJ34207.1| unnamed protein product [Thellungiella halophila]
Length = 166
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 41/62 (66%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D L TFS FGEV+ +KI+ RE+G S+GFGFV + ++ AIE M+
Sbjct: 10 FVGGLAWATADADLERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEEMN 69
Query: 101 GK 102
GK
Sbjct: 70 GK 71
>gi|293332827|ref|NP_001169335.1| uncharacterized protein LOC100383202 [Zea mays]
gi|224028769|gb|ACN33460.1| unknown [Zea mays]
gi|413918115|gb|AFW58047.1| hypothetical protein ZEAMMB73_457780 [Zea mays]
Length = 714
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL++ L D+ L FS FG++V AK++K R +G SKG+GFVKY+ + A AI
Sbjct: 420 TNLYIGYLPPTMDDDGLVSLFSQFGDIVMAKVIKDRNTGQSKGYGFVKYSDVSEANAAIA 479
Query: 98 GMDG 101
M+G
Sbjct: 480 AMNG 483
>gi|297819134|ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata]
gi|297323288|gb|EFH53709.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata]
Length = 102
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LFVS LS TTD++LR FS FG++ A++++ E+ KGFGF+ + + + A KA+
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFESEDDARKAL 65
Query: 97 EGMDGKV 103
+ +DGK+
Sbjct: 66 KSLDGKI 72
>gi|449446458|ref|XP_004140988.1| PREDICTED: uncharacterized protein LOC101208465 [Cucumis sativus]
Length = 394
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF++GLS T+++TLR F FG++V KI+ + S SKG+ FV+Y T EAA A++ M
Sbjct: 308 LFITGLSFYTSEKTLRAAFEGFGKLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEM 367
Query: 100 DGKV 103
+GK+
Sbjct: 368 NGKI 371
>gi|20257681|gb|AAM16006.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++ A AIEGM+
Sbjct: 14 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXAMRSAIEGMN 73
Query: 101 GK 102
GK
Sbjct: 74 GK 75
>gi|444509674|gb|ELV09400.1| Nucleolin [Tupaia chinensis]
Length = 261
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 6/81 (7%)
Query: 25 SLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFV 84
S +P R Q PS LFV GLS+ TT+ETL+++F V A+IV RE+G S+GFGFV
Sbjct: 179 SGSPNARSQ--PSKTLFVKGLSEDTTEETLKESFDG---SVRARIVTDRETGSSRGFGFV 233
Query: 85 KYATLEAAGKAIEGM-DGKVS 104
+ + E A A E M DG++
Sbjct: 234 DFNSEEDAKAAKEAMGDGEID 254
>gi|2674201|gb|AAC61786.1| glycine-rich RNA-binding protein [Euphorbia esula]
Length = 164
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 45/62 (72%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ TTD++L++ FS +GE++ +KI+ RE+G S+GFGFV + ++ AI+GM+
Sbjct: 10 FVGGLAWATTDQSLQEAFSPYGEILDSKIINDRETGRSRGFGFVTFNNEKSMRDAIQGMN 69
Query: 101 GK 102
+
Sbjct: 70 SQ 71
>gi|331239532|ref|XP_003332419.1| hypothetical protein PGTG_13804 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309311409|gb|EFP88000.1| hypothetical protein PGTG_13804 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 788
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 29 PQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
PQ+ Q +P NLF+ GLS L F FG +V A+++K+ +G SK FGFV + T
Sbjct: 299 PQQKQVDP-CNLFIKGLSPEIESGDLFHAFKQFGTIVSARVMKNEATGISKQFGFVSFTT 357
Query: 89 LEAAGKAIEGMDGKV 103
EA A++ MDG V
Sbjct: 358 EEATSNALKTMDGAV 372
>gi|449525960|ref|XP_004169984.1| PREDICTED: uncharacterized LOC101208465 [Cucumis sativus]
Length = 394
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF++GLS T+++TLR F FG++V KI+ + S SKG+ FV+Y T EAA A++ M
Sbjct: 308 LFITGLSFYTSEKTLRAAFEGFGKLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEM 367
Query: 100 DGKV 103
+GK+
Sbjct: 368 NGKI 371
>gi|357143694|ref|XP_003573016.1| PREDICTED: uncharacterized protein LOC100843274 [Brachypodium
distachyon]
Length = 387
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 45/64 (70%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV+GLS T+++TLR F FGE+V KI+ + S SKG+ F++Y T +A G A++ M
Sbjct: 290 LFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEDAGGAALKAM 349
Query: 100 DGKV 103
+G++
Sbjct: 350 NGEI 353
>gi|367020484|ref|XP_003659527.1| hypothetical protein MYCTH_2296694 [Myceliophthora thermophila ATCC
42464]
gi|347006794|gb|AEO54282.1| hypothetical protein MYCTH_2296694 [Myceliophthora thermophila ATCC
42464]
Length = 153
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LF+ GL+ T + TLR F FGEV A +VK R++G S+GFGFV+Y + A KAI
Sbjct: 2 SKLFIGGLAWHTEEATLRQKFEEFGEVEEAVVVKDRDTGRSRGFGFVRYINEDDAQKAIT 61
Query: 98 GMD 100
M+
Sbjct: 62 AMN 64
>gi|145493210|ref|XP_001432601.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399714|emb|CAK65204.1| unnamed protein product [Paramecium tetraurelia]
Length = 388
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 7 VAAPRGLRRLFSTSPFSSSLNP-PQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
+ +P G + + + + + L + P NLFV L D L D FS++G V+
Sbjct: 252 IYSPDGSKEIITKEKYLNDLATFNSKKTGPPGANLFVFHLPNEHKDSDLMDLFSSYGNVI 311
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV 103
A+++ ++G SKGFGFV + E+A KA E MDG +
Sbjct: 312 SARVMTDPKTGKSKGFGFVSFDKQESAQKAKEAMDGHL 349
>gi|2331131|gb|AAB66884.1| glycine-rich protein [Oryza sativa Japonica Group]
Length = 162
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L FS +GE++ +KI+ RE+G S GFGF+ +++ ++ AIEGM+
Sbjct: 11 FVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSLGFGFITFSSEQSMRDAIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|410910980|ref|XP_003968968.1| PREDICTED: RNA-binding protein 24-like [Takifugu rubripes]
Length = 232
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A R++ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRVMQP 97
>gi|444510365|gb|ELV09582.1| Nucleolin [Tupaia chinensis]
Length = 679
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AEPS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 401 AEPSKTLFVKGLSEDTTEETLKESFDG---SVRARIVTDRETGSSKGFGFVDFNSEEDAK 457
Query: 94 KAIEGM-DGKV 103
A E M DG++
Sbjct: 458 AAKEAMEDGEI 468
>gi|302756609|ref|XP_002961728.1| hypothetical protein SELMODRAFT_140819 [Selaginella moellendorffii]
gi|300170387|gb|EFJ36988.1| hypothetical protein SELMODRAFT_140819 [Selaginella moellendorffii]
Length = 130
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
++ LF+ GL+ D TLR F+ +GEV A+++ RE+G S+GFGFV + A A+
Sbjct: 9 ASKLFIGGLAWGVDDGTLRTAFANYGEVTEARVIMDRETGRSRGFGFVTFENDNEAKAAV 68
Query: 97 EGMDG 101
+GMDG
Sbjct: 69 QGMDG 73
>gi|297802026|ref|XP_002868897.1| hypothetical protein ARALYDRAFT_490700 [Arabidopsis lyrata subsp.
lyrata]
gi|297314733|gb|EFH45156.1| hypothetical protein ARALYDRAFT_490700 [Arabidopsis lyrata subsp.
lyrata]
Length = 164
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+E FV GL+ T D L TFS FG+V+ +KI+ RE+G S+GFGFV + +A
Sbjct: 2 SEVEYRCFVGGLAWATQDHDLERTFSQFGDVLDSKIINDRETGRSRGFGFVTFKDEKAMR 61
Query: 94 KAIEGMDGK 102
AIE M+GK
Sbjct: 62 DAIEEMNGK 70
>gi|242073000|ref|XP_002446436.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
gi|241937619|gb|EES10764.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
Length = 135
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS+ T+E+L + FS +G+V+ A +V+ + + KGFGFVK+A+ E A A E M
Sbjct: 37 LFVGGLSQFATEESLAEAFSRYGQVIEATVVRDKVTDIPKGFGFVKFASPEEANNAREEM 96
Query: 100 DGK 102
+GK
Sbjct: 97 NGK 99
>gi|168037600|ref|XP_001771291.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677380|gb|EDQ63851.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ TTD+ L F FG+V+ +K++ RE+G S+GFGF+ +A A +AI+ M+
Sbjct: 5 FVGGLAWATTDDRLEQAFRPFGDVIQSKVISDRETGRSRGFGFITFADENAMNEAIKEMN 64
Query: 101 GK 102
GK
Sbjct: 65 GK 66
>gi|15231311|ref|NP_190188.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7630030|emb|CAB88326.1| RNA binding protein-like [Arabidopsis thaliana]
gi|46931202|gb|AAT06405.1| At3g46020 [Arabidopsis thaliana]
gi|50253530|gb|AAT71967.1| At3g46020 [Arabidopsis thaliana]
gi|332644581|gb|AEE78102.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 102
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LFVS LS TTD++LR FS FG++ A++++ E+ KGFGF+ + + + A KA+
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 97 EGMDGKV 103
+ +DGK+
Sbjct: 66 KSLDGKI 72
>gi|413934108|gb|AFW68659.1| hypothetical protein ZEAMMB73_687460 [Zea mays]
Length = 270
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG +V + KI++ E+G S+GFGFV Y + E++ +AIE
Sbjct: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYESFESSDQAIE 85
Query: 98 GMDGKVSLC 106
M+ + LC
Sbjct: 86 AMNNQ-HLC 93
>gi|119591368|gb|EAW70962.1| nucleolin, isoform CRA_c [Homo sapiens]
gi|193785526|dbj|BAG50892.1| unnamed protein product [Homo sapiens]
Length = 536
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 20/103 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG +P R Q PS LFV GLS+ TT+ETL+++F
Sbjct: 378 AIRLELQGPRG--------------SPNARSQ--PSKTLFVKGLSEDTTEETLKESFDG- 420
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKV 103
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 421 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 461
>gi|112994|sp|P10979.1|GRPA_MAIZE RecName: Full=Glycine-rich RNA-binding, abscisic acid-inducible
protein
gi|22313|emb|CAA31077.1| ABA-inducible gene protein [Zea mays]
gi|195605904|gb|ACG24782.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195617536|gb|ACG30598.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195620254|gb|ACG31957.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195637320|gb|ACG38128.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|226091|prf||1410284A abscisic acid inducible gene
Length = 157
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 46/62 (74%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T++E+L + F+++GE++ +K++ RE+G S+GFGFV +++ + AIE M+
Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|413933457|gb|AFW68008.1| responsive to abscisic acid15 [Zea mays]
Length = 159
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 46/62 (74%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T++E+L + F+++GE++ +K++ RE+G S+GFGFV +++ + AIE M+
Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|226491203|ref|NP_001151562.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195647746|gb|ACG43341.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 46/62 (74%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T++E+L + F+++GE++ +K++ RE+G S+GFGFV +++ + AIE M+
Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|195645042|gb|ACG41989.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 142
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 46/62 (74%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T++E+L + F+++GE++ +K++ RE+G S+GFGFV +++ + AIE M+
Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|194700358|gb|ACF84263.1| unknown [Zea mays]
gi|413933458|gb|AFW68009.1| responsive to abscisic acid15 [Zea mays]
Length = 140
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 46/62 (74%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T++E+L + F+++GE++ +K++ RE+G S+GFGFV +++ + AIE M+
Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|297735183|emb|CBI17545.3| unnamed protein product [Vitis vinifera]
Length = 238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLFV L ++ L DTFSAFG +V + KI++ ++G S+GFGFV Y + EA+ AIE
Sbjct: 113 NLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIE 172
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 173 AMNGQY-LC 180
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
+V L + T+E L + F G VV+ + K R + +G+GFV++ + E A AI+ ++
Sbjct: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
>gi|112983234|ref|NP_001037606.1| TAR DNA binding protein homolog [Bombyx mori]
gi|95115208|gb|ABF55970.1| TBPH [Bombyx mori]
Length = 286
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 22 FSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
F + +PP RP+ ++L V GL +TT+E +RD FS+FG+++ ++ + +G SKGF
Sbjct: 75 FPRAESPPPRPRC---SDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKRDTRTGLSKGF 131
Query: 82 GFVKYATLEAAGKAI 96
GF+K+A EA +A+
Sbjct: 132 GFIKFAEYEAQLRAL 146
>gi|47086303|ref|NP_998030.1| RNA-binding protein 24 [Danio rerio]
gi|82239979|sp|Q76LC6.1|RBM24_DANRE RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24; AltName: Full=RNA-binding protein
SEB-4
gi|45126691|dbj|BAD12194.1| RNA binding protein [Danio rerio]
gi|190337254|gb|AAI63034.1| RNA binding motif protein 24 [Danio rerio]
gi|190338707|gb|AAI63027.1| RNA binding motif protein 24 [Danio rerio]
Length = 230
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A R++ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRVMQP 97
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L + L DTFSAFG ++ KI H E G SKG+GFV Y TLEAA AI+
Sbjct: 117 NIFIKNLDPSIDHKALHDTFSAFGNILSCKIA-HDEQGNSKGYGFVHYETLEAAESAIKS 175
Query: 99 MDG 101
++G
Sbjct: 176 VNG 178
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L D+ LRD FS +G + AKI++ ++ S+GFGFV + + E A +A+
Sbjct: 313 NLYVKNLDDDMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATRAVTE 372
Query: 99 MDGKV 103
M+G++
Sbjct: 373 MNGRI 377
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TDE L F +G + I + + G SKGFGFV + + A A++
Sbjct: 209 TNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRD-DDGTSKGFGFVNFEKHQDAQNAVD 267
Query: 98 GMDGK 102
+ K
Sbjct: 268 DLHKK 272
>gi|212722916|ref|NP_001132731.1| uncharacterized protein LOC100194217 [Zea mays]
gi|194695242|gb|ACF81705.1| unknown [Zea mays]
gi|413933459|gb|AFW68010.1| responsive to abscisic acid15 [Zea mays]
Length = 96
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 48/69 (69%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T++E+L + F+++GE++ +K++ RE+G S+GFGFV +++ +
Sbjct: 4 ADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSML 63
Query: 94 KAIEGMDGK 102
AIE M+GK
Sbjct: 64 DAIENMNGK 72
>gi|34534595|dbj|BAC87055.1| unnamed protein product [Homo sapiens]
Length = 603
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 20/103 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG +P R Q PS LFV GLS+ TT+ETL+++F
Sbjct: 445 AIRLELQGPRG--------------SPNARSQ--PSKTLFVKGLSEDTTEETLKESFDG- 487
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKV 103
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 488 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 528
>gi|296811816|ref|XP_002846246.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
gi|238843634|gb|EEQ33296.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
Length = 133
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GL+ TTD+TLRD FS FG + A +VK R++ S+GFGFV+++ A A+ M
Sbjct: 6 LFIGGLAWHTTDDTLRDGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSNESEADAALNAM 65
Query: 100 -----DGKV 103
DG+V
Sbjct: 66 NNQEFDGRV 74
>gi|449431998|ref|XP_004133787.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
gi|449477982|ref|XP_004155183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
Length = 481
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ +F+ GLS+ +E LRD + GE+ +I+K ++SG SKG+ F+ + T EAA KAIE
Sbjct: 105 SEVFIGGLSRDVLEEDLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIE 164
Query: 98 GMDGK 102
+ GK
Sbjct: 165 DLHGK 169
Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 15 RLFSTSPFSSSLNPPQRPQAEPSTN---LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVK 71
+L SP S +P P + L+V + + TT E L++ F GEV +
Sbjct: 254 KLDGNSPTVSWADPKSMPDNSAAAQVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPP 313
Query: 72 HRESGYSKGFGFVKYATLEAAGKAIE 97
+ + F F+ YA +A KA++
Sbjct: 314 GKAGSSKRDFAFIHYAERSSALKAVK 339
>gi|385808713|ref|YP_005845109.1| RRM domain RNA-binding protein [Ignavibacterium album JCM 16511]
gi|383800761|gb|AFH47841.1| RRM domain RNA-binding protein [Ignavibacterium album JCM 16511]
Length = 83
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 40/64 (62%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV L DETLR+TF G VV AK++K RE+G S+GFGFV+ A AI
Sbjct: 2 STKLFVGSLPWSVDDETLRETFEEHGNVVSAKVIKDRETGRSRGFGFVEMENSADAKSAI 61
Query: 97 EGMD 100
E ++
Sbjct: 62 EALN 65
>gi|375146726|ref|YP_005009167.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361060772|gb|AEV99763.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 104
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++VS LS DE L+D F+ +GEV AK++ RE+G S+GFGFV+ + A+ KAI
Sbjct: 2 NIYVSNLSFDVQDEDLKDFFAPYGEVTSAKVITDRETGRSRGFGFVEMSDEAASKKAIAE 61
Query: 99 MDG 101
+DG
Sbjct: 62 LDG 64
>gi|20257699|gb|AAM16015.1| glycine-rich RNA binding protein [Zea mays]
gi|20257705|gb|AAM16018.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++ A AIEGM+
Sbjct: 20 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXAMRSAIEGMN 79
Query: 101 GK 102
GK
Sbjct: 80 GK 81
>gi|20257679|gb|AAM16005.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++ A AIEGM+
Sbjct: 20 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXAMRSAIEGMN 79
Query: 101 GK 102
GK
Sbjct: 80 GK 81
>gi|351725105|ref|NP_001235801.1| uncharacterized protein LOC100305467 [Glycine max]
gi|255625591|gb|ACU13140.1| unknown [Glycine max]
Length = 156
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T + L FS +G+VV +KI+ RE+G S+GFGFV +A+ ++
Sbjct: 4 ADVEYRCFVGGLAWATDNYDLEKAFSQYGDVVESKIINDRETGRSRGFGFVTFASEDSMR 63
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 64 DAIEGMNGQ 72
>gi|226510389|ref|NP_001150093.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195636652|gb|ACG37794.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 135
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPST-NLFVSGLSKRTTDETLRDTFSAFGEV 64
A+AA R R ++ S++ P Q+ T LFV GLS+ T+ +L + FS +G+V
Sbjct: 2 AMAALREASRCLASRGRSAAWRPVLLAQSRGITYKLFVGGLSQFATEASLAEAFSRYGQV 61
Query: 65 VHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
+ A +V+ + + KGFGFVK+A+ E A A E M+GK
Sbjct: 62 IEATVVRDKVTDVPKGFGFVKFASPEEANNAREEMNGK 99
>gi|162463657|ref|NP_001105707.1| glycine-rich protein1 [Zea mays]
gi|22293|emb|CAA43431.1| glycine-rich protein [Zea mays]
Length = 155
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++T E IEGM+
Sbjct: 11 FVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEERMRNRIEGMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|194699346|gb|ACF83757.1| unknown [Zea mays]
gi|414587318|tpg|DAA37889.1| TPA: glycine-rich RNA-binding protein 2 [Zea mays]
Length = 135
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPST-NLFVSGLSKRTTDETLRDTFSAFGEV 64
A+AA R R ++ S++ P Q+ T LFV GLS+ T+ +L + FS +G+V
Sbjct: 2 AMAALRETSRCLASRGRSAAWRPVLLAQSRGITYKLFVGGLSQFATEASLAEAFSRYGQV 61
Query: 65 VHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
+ A +V+ + + KGFGFVK+A+ E A A E M+GK
Sbjct: 62 IEATVVRDKVTDVPKGFGFVKFASPEEANNAREEMNGK 99
>gi|226499338|ref|NP_001149519.1| glycine-rich RNA-binding protein 8 [Zea mays]
gi|195627730|gb|ACG35695.1| glycine-rich RNA-binding protein 8 [Zea mays]
Length = 198
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 41/62 (66%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
F+ LS TTDE+L+D FS FG + AK+V + SG S+GFGFV + +A AIEGM
Sbjct: 9 CFIGNLSWSTTDESLKDAFSKFGNLTEAKVVLDKFSGRSRGFGFVTFDEKQAMEDAIEGM 68
Query: 100 DG 101
+G
Sbjct: 69 NG 70
>gi|414587608|tpg|DAA38179.1| TPA: hypothetical protein ZEAMMB73_126317 [Zea mays]
Length = 750
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL++ L D L FS FGE+V AK++K R +G SKG+GFVKY+ + A AI
Sbjct: 427 TNLYIGYLPPTMDDAGLVSLFSQFGEIVMAKVIKDRNTGQSKGYGFVKYSDVSQANAAIA 486
Query: 98 GMDG 101
M+G
Sbjct: 487 AMNG 490
>gi|402217291|gb|EJT97372.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 167
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 42 VSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
+ LS T D+TLR FS FG+V+ ++K RESG S+GFGFV + T + A AI+G++
Sbjct: 17 IGNLSWNTNDDTLRSAFSQFGQVLDCIVMKDRESGRSRGFGFVTFGTSQEAQAAIDGLN 75
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+IE
Sbjct: 122 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQD-ESGASKGYGFVHFETEEAANKSIEK 180
Query: 99 MDG 101
++G
Sbjct: 181 VNG 183
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 318 VNLYVKNLDDTIDDERLRKEFTPFGTITSAKVM--MEEGRSKGFGFVCFSQPEEATKAVT 375
Query: 98 GMDGKV 103
M+G++
Sbjct: 376 EMNGRI 381
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TD+ L++ F +G + K++ ++ G S+GFGFV + +A +A+
Sbjct: 214 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVM-IKDDGKSRGFGFVAFEDPNSAEQAVL 272
Query: 98 GMDGK 102
++GK
Sbjct: 273 DLNGK 277
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 41/65 (63%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST L+V L+ DE L FS FGEV A++V RESG S+GF FV A+ +AA KA
Sbjct: 89 STKLYVGNLAWSCDDEMLNQAFSQFGEVKAAEVVLDRESGRSRGFAFVTMASPDAAEKAR 148
Query: 97 EGMDG 101
G+DG
Sbjct: 149 RGLDG 153
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A + L+V L D L D F FG V +A++V R+SG S+GF FV +T E A
Sbjct: 199 EAGDANRLYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEA 258
Query: 93 GKAIEGMDGK 102
+A+ +DG+
Sbjct: 259 NEAMANLDGE 268
>gi|6273331|gb|AAF06329.1|AF191305_1 glycine-rich RNA binding protein, partial [Medicago sativa]
Length = 105
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T ++ L FS +GE+V +KI+ RE+G S+GFGFV +A ++
Sbjct: 2 ADVEDRCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 61
Query: 94 KAIEGMDGK 102
IE M+G+
Sbjct: 62 DVIEAMNGQ 70
>gi|224094731|ref|XP_002310211.1| predicted protein [Populus trichocarpa]
gi|222853114|gb|EEE90661.1| predicted protein [Populus trichocarpa]
Length = 184
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG +V + KI++ E+G S+GFGF+ Y + EA+ AIE
Sbjct: 94 NLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIE 153
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 154 AMNGQY-LC 161
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+V L + ++E L + F G VV+ + K R + +G+GFV++ + E A AI+
Sbjct: 9 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 65
>gi|392927018|ref|NP_509705.3| Protein TIAR-3 [Caenorhabditis elegans]
gi|211970450|emb|CAB01717.3| Protein TIAR-3 [Caenorhabditis elegans]
Length = 450
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 24 SSLNPPQRPQAEPSTN--LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
S+ PP + + S + +FV LSK ++E L+ TF+ FGEV AK+++ ++ SKG+
Sbjct: 209 SASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGY 268
Query: 82 GFVKYATLEAAGKAIEGMDGK 102
GFV + + A AI GM+GK
Sbjct: 269 GFVSFPNKQNAENAIAGMNGK 289
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T+++V +S++TTD LRD FS +G++ +I K ++ + FV+Y E A KAI
Sbjct: 326 NTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFK------TQRYAFVRYEKKECATKAI 379
Query: 97 EGMDGK 102
M+GK
Sbjct: 380 MEMNGK 385
>gi|83032218|gb|ABB97027.1| unknown [Brassica rapa]
Length = 208
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 18 STSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
+++ ++S + Q + S+ +FV G+S T + LR+ FS +GEVV AKI+ RE+G
Sbjct: 14 TSAHVTASNSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGR 73
Query: 78 SKGFGFVKYATLEAAGKAIEGMDGK 102
S+GF FV + + E A A++ +DG+
Sbjct: 74 SRGFAFVTFTSTEEASNAMQ-LDGQ 97
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 6/71 (8%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI- 96
TN+FV L DE L++ FS +G++ K+V+ SG SKGFGFVKY T EAA KA+
Sbjct: 199 TNVFVKNLGDDMNDEKLKELFSEYGQIESVKVVRD-ASGKSKGFGFVKYETHEAAQKAVL 257
Query: 97 ----EGMDGKV 103
+ MDGKV
Sbjct: 258 ELHGKSMDGKV 268
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
P +++ L + DE L++ FS+FG + AK++ E G KGFG V +++ E A KA
Sbjct: 300 PGVPIYIKNLDESIDDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKA 357
Query: 96 IEGMDGKV 103
++ M+G++
Sbjct: 358 VDEMNGRL 365
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
P R + N+F+ L K + L FSAFG ++ K+V + SKG+ +V +
Sbjct: 96 PDDRLRKSGVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCKVVC--DDNGSKGYAYVHFD 153
Query: 88 TLEAAGKAIEGMDG 101
+L AA +AI M+G
Sbjct: 154 SLAAANRAIWHMNG 167
>gi|257043450|gb|ACV33079.1| glycine-rich RNA-binding protein [Limonium bicolor]
Length = 140
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S+ LF+ GLS T D++L+D F++FG+V A+++ R +G S+GFGFV+Y E+A A
Sbjct: 33 SSSKLFIGGLSWGTDDQSLKDAFASFGDVTEARVIMDRNTGKSRGFGFVEYNDTESASSA 92
Query: 96 IEGMDGK 102
+ MDG+
Sbjct: 93 MSSMDGQ 99
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 21 PFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKG 80
P S PQRP+ + + ++V LS + L + FS GEV+ A+I+ RESG S+G
Sbjct: 161 PRDRSSRSPQRPRGD-ANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRG 219
Query: 81 FGFVKYATLEAAGKAIEGMDG 101
FGFV Y + E AI +DG
Sbjct: 220 FGFVTYGSAEEVENAISNLDG 240
>gi|624925|dbj|BAA05170.1| RNA-binding glycine rich protein [Nicotiana sylvestris]
gi|295393567|gb|ADG03639.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 259
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV GLS T + +L++ FS GEV+ A+++ R++G S+GFGFV + + E A A+
Sbjct: 39 SSKLFVGGLSWGTDETSLKEAFSQHGEVIEARVIMDRDTGRSRGFGFVSFTSTEEAASAL 98
Query: 97 EGMDGK 102
+DG+
Sbjct: 99 TALDGQ 104
>gi|212274429|ref|NP_001130902.1| uncharacterized protein LOC100192006 [Zea mays]
gi|194690404|gb|ACF79286.1| unknown [Zea mays]
gi|413934109|gb|AFW68660.1| hypothetical protein ZEAMMB73_687460 [Zea mays]
Length = 357
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG +V + KI++ E+G S+GFGFV Y + E++ +AIE
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYESFESSDQAIE 172
Query: 98 GMDGKVSLC 106
M+ + LC
Sbjct: 173 AMNNQ-HLC 180
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
+V L + ++E L + F G VV+ + K R + +G+GFV++ + E A AI+ ++
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKTLN 87
>gi|297825019|ref|XP_002880392.1| hypothetical protein ARALYDRAFT_481034 [Arabidopsis lyrata subsp.
lyrata]
gi|297326231|gb|EFH56651.1| hypothetical protein ARALYDRAFT_481034 [Arabidopsis lyrata subsp.
lyrata]
Length = 159
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T D L FS +G+VV +KI+ RE+G S+GFGFV + ++
Sbjct: 4 ADVEYRCFVGGLAWATDDRALETAFSQYGDVVDSKIINDRETGRSRGFGFVTFKDEKSMK 63
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 64 DAIEGMNGQ 72
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE+L+D FS FG+ + K+++ SG SKGFGFV Y E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDA 244
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 245 NKAVEEMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|343961999|dbj|BAK62587.1| nucleolin [Pan troglodytes]
Length = 537
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 20/103 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG +P R Q PS LFV GLS+ TT+ETL+++F
Sbjct: 379 AIRLELQGPRG--------------SPNARSQ--PSKTLFVKGLSEDTTEETLKESFDG- 421
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKV 103
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 422 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 462
>gi|365153971|ref|ZP_09350405.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
gi|158605004|gb|EAT99377.3| 31 kDa ribonucleoprotein, (RNA-binding proteinRNP-T) (RNA-binding
protein 1/2/3) (AtRBP33) (RNA-binding proteincp31)
[Campylobacter concisus 13826]
gi|363650683|gb|EHL89770.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
Length = 81
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++V LS RTT+ L++ F+ FGEV AKIVK RE+ SKGFGFV+ KAI+
Sbjct: 2 NIYVGNLSYRTTEAELKEAFAQFGEVRRAKIVKDRETDRSKGFGFVEMDDANEGQKAIDA 61
Query: 99 MDGK 102
++ K
Sbjct: 62 LNEK 65
>gi|449486950|ref|XP_004157451.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 163
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ +FV GLS + D TLR FS +GEVV A++V ++G KGFGFV ++ E A AI+
Sbjct: 70 SKVFVGGLSYNSDDLTLRVAFSKYGEVVEARVVMDPDTGRCKGFGFVTFSAKEEASSAIK 129
Query: 98 GMDGK 102
+DGK
Sbjct: 130 ALDGK 134
>gi|156388911|ref|XP_001634736.1| predicted protein [Nematostella vectensis]
gi|156221822|gb|EDO42673.1| predicted protein [Nematostella vectensis]
Length = 313
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
E T L V+ + + TD+T R F A + + KIV+H+ SG+S GFGFV Y T E A K
Sbjct: 2 ESKTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQK 61
Query: 95 AIEGMDG 101
AI+ ++G
Sbjct: 62 AIDKLNG 68
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V + K+ + R F A+G +V+ ++++ + +G KG GFV Y A AI
Sbjct: 92 NLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISS 151
Query: 99 MDG 101
+ G
Sbjct: 152 LSG 154
>gi|226498016|ref|NP_001151732.1| RNA binding protein [Zea mays]
gi|195649405|gb|ACG44170.1| RNA binding protein [Zea mays]
Length = 147
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 12 GLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVK 71
G+R S ++ L PP +T L+VSGLS RTT+ +LRD F FG++ +V
Sbjct: 40 GVRNQQRASTATACLPPPSTSHGA-ATRLYVSGLSFRTTERSLRDAFEKFGDLTEVCLVM 98
Query: 72 HRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
R + +GF F+ Y E A A+EGM GK
Sbjct: 99 DRVAKRPRGFAFLSYTGEEEARGAMEGMHGK 129
>gi|59802519|gb|AAX07503.1| unknown [Gemmata sp. Wa1-1]
Length = 122
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
L+V LS TD L+D F+ +G VV A+++ R++G SKGFGFV+ T + A AI G
Sbjct: 41 KLYVGNLSWGVTDSQLQDMFTPYGSVVSAQVIMDRDTGRSKGFGFVEMGTDQEAQAAITG 100
Query: 99 MDGKV 103
M G+V
Sbjct: 101 MHGQV 105
>gi|63054583|ref|NP_594001.2| U2 snRNP-associated RNA-binding protein Sap49 [Schizosaccharomyces
pombe 972h-]
gi|26399889|sp|O14102.2|SAP49_SCHPO RecName: Full=Spliceosome-associated protein 49
gi|159883972|emb|CAC19730.2| U2 snRNP-associated RNA-binding protein Sap49 [Schizosaccharomyces
pombe]
Length = 335
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NLFV L + L DTFSA G++V A V E+G SKG+GFV Y + E A AIE
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
Query: 99 MDGK 102
M+ +
Sbjct: 160 MNNQ 163
>gi|22328599|ref|NP_193122.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|48310472|gb|AAT41827.1| At4g13860 [Arabidopsis thaliana]
gi|332657937|gb|AEE83337.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 87
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T ++V LS TTD+ LR+ FS +G VV A +++ R + S+GFGFV Y++ A A+
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 97 EGMDGK 102
GMDGK
Sbjct: 62 SGMDGK 67
>gi|10799202|gb|AAG23220.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 170
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T +ETL F+ FG+V+ +K++ RE+G S+GFGFV +++ ++ AIE M+
Sbjct: 11 FVGGLAWATNNETLEHAFANFGQVLDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|308081546|ref|NP_001183096.1| uncharacterized protein LOC100501457 [Zea mays]
gi|238009292|gb|ACR35681.1| unknown [Zea mays]
gi|414871228|tpg|DAA49785.1| TPA: hypothetical protein ZEAMMB73_160597 [Zea mays]
Length = 359
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG +V + KI++ E+G S+GFGFV Y + E++ +AIE
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYESFESSDQAIE 172
Query: 98 GMDGKVSLC 106
M+ + LC
Sbjct: 173 AMNNQ-HLC 180
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+V L + ++E L + F G VV+ + K R + +G+GFV++ + E A AI+
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
>gi|432883399|ref|XP_004074265.1| PREDICTED: RNA-binding protein 24-like [Oryzias latipes]
Length = 232
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A R++ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRVMQP 97
>gi|74179817|dbj|BAE36484.1| unnamed protein product [Mus musculus]
Length = 707
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGF+ + + E A
Sbjct: 564 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFLDFNSEEDA 620
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 621 KAAKEAMEDGEID 633
>gi|256839767|ref|ZP_05545276.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738697|gb|EEU52022.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 123
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL++S LS +D LR F+ +GE+ AK++ RE+G S+GFGFV+ + E A KAIE
Sbjct: 2 NLYISNLSYNISDADLRQLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEE 61
Query: 99 M-----DGKV 103
+ DGKV
Sbjct: 62 LNQASYDGKV 71
>gi|403172110|ref|XP_003331254.2| hypothetical protein PGTG_13217 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169716|gb|EFP86835.2| hypothetical protein PGTG_13217 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 392
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH-AKIVKHRESGYSKGFGFVKYATL 89
R Q + NLF+ L + L DTFS FG +V AKI ++ +G S G+GFV Y +
Sbjct: 93 RKQVDIGANLFIGNLDANVDERMLYDTFSTFGTLVQTAKIARNPTTGQSNGYGFVAYESF 152
Query: 90 EAAGKAIEGMDGK 102
EAA AIE M+G+
Sbjct: 153 EAADTAIESMNGQ 165
>gi|145491019|ref|XP_001431509.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145522722|ref|XP_001447205.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398614|emb|CAK64111.1| unnamed protein product [Paramecium tetraurelia]
gi|124414705|emb|CAK79808.1| unnamed protein product [Paramecium tetraurelia]
Length = 260
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
E NLF+ L ++TL +TFSAFG ++ KI+++ E+G SKG+GFV Y E++
Sbjct: 103 EVGANLFIGNLDTEIDEKTLYETFSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDG 162
Query: 95 AIEGMDGK 102
A+ M+G+
Sbjct: 163 ALTAMNGQ 170
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
PP + + +T +++ L ++ TD+ + + F G VV+ I K + SG +G+GFV++
Sbjct: 10 PPLYERNQEAT-IYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFK 68
Query: 88 TLEAAGKAIEGM 99
+ E A AI+ M
Sbjct: 69 SEEDADYAIKIM 80
>gi|327270050|ref|XP_003219804.1| PREDICTED: RNA-binding protein 24-like [Anolis carolinensis]
Length = 230
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|169772913|ref|XP_001820925.1| glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40]
gi|238490830|ref|XP_002376652.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
gi|83768786|dbj|BAE58923.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697065|gb|EED53406.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
Length = 125
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S ++V LS T DE+LR TFS FG V+ A ++K RE+G S+GFGFV ++ A A
Sbjct: 2 SSAKVYVGNLSWNTNDESLRQTFSEFGNVLDAIVMKDRETGRSRGFGFVTFSAQTEADAA 61
Query: 96 IEGMD 100
I G++
Sbjct: 62 IGGLN 66
>gi|356538789|ref|XP_003537883.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Glycine
max]
Length = 140
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
FV GL+ T D L FS +G +V +KI+ RE+G S+GFGFV +A+ + AIEGM
Sbjct: 10 CFVGGLAWATDDHALEKAFSHYGNIVESKIINDRETGRSRGFGFVTFASENSMKDAIEGM 69
Query: 100 DGK 102
+G+
Sbjct: 70 NGQ 72
>gi|209976406|gb|ACJ04160.1| putative glycine-rich RNA-binding protein [Chorispora bungeana]
Length = 175
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T D L FS +G+VV +KI+ RE+G S+GFGFV + ++
Sbjct: 4 ADVEFRCFVGGLAWATDDRALETAFSQYGDVVDSKIINDRETGRSRGFGFVTFKDEKSMK 63
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 64 DAIEGMNGQ 72
>gi|159476562|ref|XP_001696380.1| nuclear pre-mRNA splicing factor, component of splicing factor 3b
[Chlamydomonas reinhardtii]
gi|158282605|gb|EDP08357.1| nuclear pre-mRNA splicing factor, component of splicing factor 3b
[Chlamydomonas reinhardtii]
Length = 396
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEA 91
QA+ NLF+ L ++ L DTFSAFG +V+ KI++ ++G S+GFGFV Y EA
Sbjct: 113 QADVGANLFIGNLDPDVDEKLLYDTFSAFGVIVNTPKIMRDPDTGNSRGFGFVSYDCFEA 172
Query: 92 AGKAIEGMDGK 102
+ AIE M+G+
Sbjct: 173 SDAAIEAMNGQ 183
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V L +TT+E + + F+ G VV+ + K R + +G+GFV++ E A AI+ +
Sbjct: 33 VYVGNLDVQTTEELVWELFTQAGPVVNVYMPKDRVTNAHQGYGFVEFKGEEDADYAIKVL 92
Query: 100 D 100
+
Sbjct: 93 N 93
>gi|115482332|ref|NP_001064759.1| Os10g0457000 [Oryza sativa Japonica Group]
gi|31432465|gb|AAP54095.1| Splicing factor 3B subunit 4, putative, expressed [Oryza sativa
Japonica Group]
gi|113639368|dbj|BAF26673.1| Os10g0457000 [Oryza sativa Japonica Group]
gi|215737182|dbj|BAG96111.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218184664|gb|EEC67091.1| hypothetical protein OsI_33883 [Oryza sativa Indica Group]
Length = 355
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG +V + KI++ E+G S+GFGFV Y + E++ +AIE
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIE 172
Query: 98 GMDGKVSLC 106
M+ + LC
Sbjct: 173 AMNNQ-HLC 180
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+V L + ++E L + F G VV+ + K R + +G+GFV++ + E A AI+
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
>gi|302765773|ref|XP_002966307.1| hypothetical protein SELMODRAFT_439636 [Selaginella moellendorffii]
gi|300165727|gb|EFJ32334.1| hypothetical protein SELMODRAFT_439636 [Selaginella moellendorffii]
Length = 289
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
T+++V GL+ T++ +R TF FGE+ KI++ + G S+G+GF+ +AT EAA A
Sbjct: 5 DQTSVYVGGLAYDVTEDLIRSTFEEFGEIDKVKIIQDHD-GQSRGYGFITFATSEAANGA 63
Query: 96 IEGMDGKV 103
I GM+GKV
Sbjct: 64 IYGMNGKV 71
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+V E+G +KG+GFV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKAMYDTFSAFGHILSCKVVTD-ENGVNKGYGFVHFETQEAANKAIEK 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS +G + AK++ + SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDEIDDERLRKEFSRYGTITSAKVMSD-DKANSKGFGFVCFSSPEEATKAVT 352
Query: 98 GMDGKV 103
M+G++
Sbjct: 353 EMNGRI 358
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+F+ L++ D L + +G ++ AKI+ + SKGFGF+ + EAA ++
Sbjct: 192 TNVFIKNLAEDVDDGKLAEFGGQYGSILSAKIM--FDDSKSKGFGFISFEDHEAANDFVK 249
Query: 98 GMDG 101
++G
Sbjct: 250 TING 253
>gi|126322255|ref|XP_001376382.1| PREDICTED: RNA-binding protein 24-like [Monodelphis domestica]
gi|395511913|ref|XP_003760195.1| PREDICTED: RNA-binding protein 24 [Sarcophilus harrisii]
Length = 235
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|374812290|ref|ZP_09716027.1| RNP-1 like RNA-binding protein [Treponema primitia ZAS-1]
Length = 99
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L+V LS TT++ LR+ FS FG V +KI+ RE+G SKGFGF++ T E A AI G
Sbjct: 5 LYVGNLSYNTTEDGLRNLFSEFGSVASSKIIFDRETGNSKGFGFIEMGTDEEASAAIAGT 64
Query: 100 DGK 102
+G+
Sbjct: 65 NGR 67
>gi|346223551|ref|ZP_08844693.1| RNP-1 like RNA-binding protein [Anaerophaga thermohalophila DSM
12881]
Length = 159
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NLFV+ LS TT + L D F+ +GEVV AK++ R++G SK FGFV+ E+A KAI+
Sbjct: 58 NLFVAKLSAATTSDDLNDLFAEYGEVVSAKVIMDRDTGASKRFGFVEMKDEESAQKAIKD 117
Query: 99 MD 100
++
Sbjct: 118 LN 119
>gi|1346180|sp|P49310.1|GRP1_SINAL RecName: Full=Glycine-rich RNA-binding protein GRP1A
gi|496233|gb|AAA59212.1| homology with RNA-binding proteins in meristematic tissue [Sinapis
alba]
Length = 166
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D L FS +GEV+ +KI+ RE+G S+GFGFV + ++ AIEGM+
Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>gi|426351703|ref|XP_004043369.1| PREDICTED: RNA-binding protein 24 [Gorilla gorilla gorilla]
Length = 335
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|120610816|ref|YP_970494.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120589280|gb|ABM32720.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 116
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S ++V L TDE+LR F+ FG V +KI+ RE+G SKGFGFV+ ++ E A AI
Sbjct: 2 SCKIYVGNLPYSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAI 61
Query: 97 EGMDGKVSLCMASFLHALAR 116
G++G +S+ S + LAR
Sbjct: 62 TGLNG-LSVDGRSIVVNLAR 80
>gi|47225499|emb|CAG11982.1| unnamed protein product [Tetraodon nigroviridis]
Length = 261
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A +A +A +
Sbjct: 12 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRASADRACK 71
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A R+I P
Sbjct: 72 DPNPIIDGRKANVNLAYLGAKPRVIQP 98
>gi|240848881|ref|NP_001155373.1| spliceosome associated protein-like [Acyrthosiphon pisum]
gi|239792048|dbj|BAH72409.1| ACYPI000210 [Acyrthosiphon pisum]
Length = 370
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+F+ L ++ L DTFSAFG ++ KI++ ++G SKGF F+ YA+ EA+ AIE
Sbjct: 101 NVFIGNLDSEVDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINYASFEASDAAIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQ-HLC 168
Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V GL ++ +D + + F G VV+ + K R + +G+GFV++ + A AI+ M
Sbjct: 15 IYVGGLDEKVSDTLMWELFVQAGPVVNVHMPKDRVTQSHQGYGFVEFLAEDDADYAIKIM 74
Query: 100 D 100
+
Sbjct: 75 N 75
>gi|21754197|dbj|BAC04474.1| unnamed protein product [Homo sapiens]
Length = 211
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|325279880|ref|YP_004252422.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM 20712]
gi|324311689|gb|ADY32242.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM 20712]
Length = 99
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+++SGLS TTD L + FS +GE+ AKI+ RE+G S+GFGFV+ KAI+
Sbjct: 2 NIYISGLSYGTTDADLNELFSEYGEISSAKIISDRETGRSRGFGFVEMTNDTEGQKAIDE 61
Query: 99 MDG 101
++G
Sbjct: 62 LNG 64
>gi|242039481|ref|XP_002467135.1| hypothetical protein SORBIDRAFT_01g020190 [Sorghum bicolor]
gi|241920989|gb|EER94133.1| hypothetical protein SORBIDRAFT_01g020190 [Sorghum bicolor]
Length = 355
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG +V + KI++ E+G S+GFGFV Y + E++ +AIE
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIE 172
Query: 98 GMDGKVSLC 106
M+ + LC
Sbjct: 173 AMNNQ-HLC 180
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+V L + ++E L + F G VV+ + K R + +G+GFV++ + E A AI+
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
>gi|71659778|ref|XP_821609.1| poly(A)-binding protein [Trypanosoma cruzi strain CL Brener]
gi|459650|gb|AAC46487.1| poly(A) binding protein [Trypanosoma cruzi]
gi|515321|gb|AAC46489.1| poly(A) binding protein [Trypanosoma cruzi]
gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|70886993|gb|EAN99758.1| poly(A)-binding protein, putative [Trypanosoma cruzi]
gi|407408287|gb|EKF31789.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
gi|407847529|gb|EKG03215.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi]
Length = 550
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSK--GFGFVKYATLEAAGKA 95
TNL+V L DE L++ FSAFGEV AK+ R+ G ++ GF +V YAT EAA KA
Sbjct: 184 TNLYVKNLDPSVNDEKLKEVFSAFGEVTSAKV---RDLGANQTVGFAYVAYATHEAAAKA 240
Query: 96 IEGMDGKVS 104
+E +D K S
Sbjct: 241 VEELDEKES 249
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V T E L++ F GE V ++ R + S+ FGFV + AA +AI+
Sbjct: 289 NLYVKNFDDTVTSERLKELFERCGETVSVSVMMDRATRVSRCFGFVSFKEQSAASRAIQE 348
Query: 99 MDGKVSL 105
+ G +L
Sbjct: 349 LHGSTAL 355
>gi|326519747|dbj|BAK00246.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 368
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG +V + KI++ E+G S+GFGFV Y + E++ +AIE
Sbjct: 113 NLFIGNLDPEVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIE 172
Query: 98 GMDGKVSLC 106
M+ + LC
Sbjct: 173 AMNNQ-HLC 180
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+V L + ++E L + F G VV+ + K R + +G+GFV++ + E A AI+
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V ++ TD+ RD F+AFG+V + + + +E G S+GFGFV + T EAA KA++
Sbjct: 245 TNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAAKAVD 303
Query: 98 GMDGK 102
++GK
Sbjct: 304 DLNGK 308
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E G SKG+GFV Y T EAA +AI+
Sbjct: 153 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKH 211
Query: 99 MDG 101
++G
Sbjct: 212 VNG 214
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
P + S +L+V L T+ L + FS G V ++ + + S G+ +V Y T
Sbjct: 58 PHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSD 117
Query: 92 AGKAIEGMD 100
KA+E ++
Sbjct: 118 GEKALEELN 126
>gi|1346181|sp|P49311.1|GRP2_SINAL RecName: Full=Glycine-rich RNA-binding protein GRP2A
gi|496237|gb|AAA59213.1| homology with RNA-binding proteins in meristematic tissue [Sinapis
alba]
Length = 169
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T + +L FS FGE+V +KI+ RE+G S+GFGFV + ++ AIEGM+
Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>gi|357163035|ref|XP_003579604.1| PREDICTED: uncharacterized protein LOC100833136 [Brachypodium
distachyon]
Length = 749
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL++ L D L + FS FGE+V AK++K R +G SKG+GFVKY+ + A AI
Sbjct: 428 TNLYIGYLPPMFDDSGLINLFSQFGEIVMAKVIKDRNTGQSKGYGFVKYSDVSQANAAIA 487
Query: 98 GMDG 101
M G
Sbjct: 488 AMSG 491
>gi|307110375|gb|EFN58611.1| hypothetical protein CHLNCDRAFT_10145, partial [Chlorella
variabilis]
Length = 329
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYAT 88
R A+ NLF+ GL ++ L DTFSAFG +V+ KI++ ++G +KGFGF+ + +
Sbjct: 101 DRNTADVGANLFIGGLDPEVDEKLLYDTFSAFGVIVNNPKIMRDPDTGLTKGFGFLSFDS 160
Query: 89 LEAAGKAIEGMDGK 102
EA+ A+E M+G+
Sbjct: 161 FEASDAALEAMNGQ 174
>gi|168034546|ref|XP_001769773.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678882|gb|EDQ65335.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 134
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 37 STNLFV-SGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S+ LF+ +GL+ T + TLRD FS+FG V KI+ R++G S+GFGFV + + E A A
Sbjct: 44 SSKLFIGAGLAWATDENTLRDAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVA 103
Query: 96 IEGMDGK 102
++ MDG+
Sbjct: 104 LQEMDGR 110
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ TDE L++ FSAFG+ + ++++ E G S+GFGFV YA E A KA++
Sbjct: 191 TNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRD-EKGRSRGFGFVNYAHHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
R Q NL+V L DE LR FS +G + AK++ E+G SKGFGFV +++ E
Sbjct: 287 RIQRYQGVNLYVKNLDDSIDDERLRKEFSPYGTITSAKVMT--EAGQSKGFGFVCFSSPE 344
Query: 91 AAGKAIEGMDGKV 103
A KA+ M+G++
Sbjct: 345 EATKAVTEMNGRI 357
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ + ++ L DTFSAFG ++ K+V E G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNIDDSIDNKALYDTFSAFGNILSCKVVCD-ERG-SKGYGFVHFETQEAANRAIET 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
>gi|384250449|gb|EIE23928.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 358
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ + ++ L DTFSAFG ++ KI++ E+G +KGFGFV Y + EA+ AIE
Sbjct: 117 NLFIGNIDPDVDEKLLYDTFSAFGMIIQTPKIMRDPETGATKGFGFVSYDSFEASDAAIE 176
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 177 AMNGQF-LC 184
>gi|344289554|ref|XP_003416507.1| PREDICTED: RNA-binding protein 24-like [Loxodonta africana]
Length = 237
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|242036065|ref|XP_002465427.1| hypothetical protein SORBIDRAFT_01g038690 [Sorghum bicolor]
gi|241919281|gb|EER92425.1| hypothetical protein SORBIDRAFT_01g038690 [Sorghum bicolor]
Length = 727
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL++ L D L FS FG++V AK++K R +G SKG+GFVKY+ + A AI
Sbjct: 428 TNLYIGYLPPTMDDAGLVSLFSQFGDIVMAKVIKDRNTGQSKGYGFVKYSDVSQANAAIA 487
Query: 98 GMDG 101
M+G
Sbjct: 488 AMNG 491
>gi|157864926|ref|XP_001681171.1| RNA-binding protein 5-like protein [Leishmania major strain
Friedlin]
gi|68124466|emb|CAJ02310.1| RNA-binding protein 5-like protein [Leishmania major strain
Friedlin]
Length = 245
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N++V+ L D+ L+D FS +G +V A+I++ ++S SKG+GFV + + +A KAI
Sbjct: 19 SRNVYVASLPLSFDDQQLQDLFSPYGRIVSARIMRAKKSHASKGYGFVMFREVSSAEKAI 78
Query: 97 EGMDGKV 103
EG+ G+V
Sbjct: 79 EGLHGRV 85
>gi|452821825|gb|EME28851.1| glycine-rich RNA binding protein isoform 1 [Galdieria sulphuraria]
Length = 149
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
+FV GL ++ LR+TFS +GEVV A++V RE+G S+GFGFV YA + +
Sbjct: 5 EDNRVFVGGLPWSVGEDDLRETFSKYGEVVDARVVVERETGRSRGFGFVSYAEGSSVEEC 64
Query: 96 IEGMDGK 102
I +DG+
Sbjct: 65 IAALDGQ 71
>gi|297811255|ref|XP_002873511.1| hypothetical protein ARALYDRAFT_487975 [Arabidopsis lyrata subsp.
lyrata]
gi|297319348|gb|EFH49770.1| hypothetical protein ARALYDRAFT_487975 [Arabidopsis lyrata subsp.
lyrata]
Length = 173
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T ++V GL +T +E L+ F FGE++H +V RE+G S+G+GFV + E+A +A +
Sbjct: 40 TKIYVGGLPWKTRNEGLKSYFQQFGEIIHVNVVCDRETGRSEGYGFVTFRDAESATRACQ 99
Query: 98 G----MDGKVSLCMASFLHA 113
+DG+ + C +++ A
Sbjct: 100 NPKPVIDGREAKCNLAYIGA 119
>gi|45239008|gb|AAS55633.1| unknown [Homo sapiens]
Length = 236
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|225447115|ref|XP_002273998.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial [Vitis
vinifera]
gi|297739201|emb|CBI28852.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T LFV+GLS +++L+D FS+FG+V +I+ ++SG S+GFGFV ++ A A
Sbjct: 37 NTKLFVAGLSWSVDEKSLKDAFSSFGDVTEVRIMYDKDSGRSRGFGFVYFSKEVDARSAK 96
Query: 97 EGMDGKVSL 105
+ MDGK L
Sbjct: 97 DAMDGKAFL 105
>gi|115686233|ref|XP_784135.2| PREDICTED: splicing factor 3B subunit 4-like [Strongylocentrotus
purpuratus]
Length = 425
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+F+ L ++ L DTFSAFG ++ KI++ ESG SKG+ F+ +A+ EAA AIE
Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDVESGNSKGYAFINFASFEAADAAIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQY-LC 168
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
PPQ + ++V GL ++ T+ L + F G VV+ + K R + +G+GFV++
Sbjct: 5 PPQERNQD--ATVYVGGLDEKVTEALLWELFLQAGPVVNTHMPKDRVTQSHQGYGFVEFM 62
Query: 88 TLEAAGKAIE 97
E A AI+
Sbjct: 63 GEEDADYAIK 72
>gi|296421441|ref|XP_002840273.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636488|emb|CAZ84464.1| unnamed protein product [Tuber melanosporum]
Length = 91
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GL+ T D+ LR F FG V A +VK R++G S+GFGFV+Y++ E A A++ M
Sbjct: 4 LFIGGLAWHTDDDALRQKFQEFGNVEEAVVVKDRDTGRSRGFGFVRYSSDEEATAAMDNM 63
Query: 100 D 100
+
Sbjct: 64 N 64
>gi|395007942|ref|ZP_10391636.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
gi|394314048|gb|EJE51000.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
Length = 117
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ ++V L TD TL FS FG V AK++ RE+G SKGFGFV+ A+ E A AI
Sbjct: 2 SSKIYVGNLPYSVTDSTLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAI 61
Query: 97 EGMDGKVSLCMASFLHALAR 116
G+ G +S+ S + LAR
Sbjct: 62 TGLHG-MSVDGRSIVVNLAR 80
>gi|393788491|ref|ZP_10376619.1| hypothetical protein HMPREF1068_02899 [Bacteroides nordii
CL02T12C05]
gi|392655108|gb|EIY48753.1| hypothetical protein HMPREF1068_02899 [Bacteroides nordii
CL02T12C05]
Length = 115
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F++GLS +D L + F+ +GEV A+++ RE+G SKG+GFV+ A EA KAI
Sbjct: 2 NIFIAGLSYNISDSDLTELFAEYGEVASARVISDRETGRSKGYGFVEMADEEAGNKAISA 61
Query: 99 MD 100
++
Sbjct: 62 LN 63
>gi|194038046|ref|XP_001925482.1| PREDICTED: RNA-binding protein 24-like [Sus scrofa]
Length = 236
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|378727388|gb|EHY53847.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 179
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GL+ TTDETL + FS FG + A +VK R++ S+GFGFV++AT A +A++ M
Sbjct: 4 LFIGGLAWHTTDETLYEGFSQFGNIEEAVVVKDRDTNRSRGFGFVRFATKAEADEAMQRM 63
Query: 100 D 100
+
Sbjct: 64 N 64
>gi|425765484|gb|EKV04163.1| hypothetical protein PDIP_88470 [Penicillium digitatum Pd1]
gi|425778342|gb|EKV16473.1| hypothetical protein PDIG_20660 [Penicillium digitatum PHI26]
Length = 136
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GLS T D +LR F FG V A +VK R++G S+GFGFV+++T E A A+ M
Sbjct: 4 LFIGGLSWNTDDNSLRQRFEEFGVVEDATVVKDRDTGRSRGFGFVRFSTDEEATAAMNAM 63
Query: 100 DGK 102
+ +
Sbjct: 64 NNQ 66
>gi|395830517|ref|XP_003788370.1| PREDICTED: RNA-binding protein 24 [Otolemur garnettii]
Length = 236
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|376316225|emb|CCF99622.1| RNA recognition motif-containing protein [uncultured Flavobacteriia
bacterium]
Length = 83
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+FV L+ D LR+ F AFG V A+++ RE+G S+GFGFV+ E A A++G
Sbjct: 2 NIFVGNLAWGVDDVVLREAFEAFGAVDSARVITDRETGRSRGFGFVEMPNQEEAQAALDG 61
Query: 99 MDGK 102
M+GK
Sbjct: 62 MEGK 65
>gi|348566023|ref|XP_003468802.1| PREDICTED: RNA-binding protein 24-like [Cavia porcellus]
Length = 236
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|221139802|ref|NP_001137414.1| RNA-binding protein 24 isoform 1 [Homo sapiens]
gi|297677216|ref|XP_002816502.1| PREDICTED: RNA-binding protein 24 [Pongo abelii]
gi|332822992|ref|XP_001175216.2| PREDICTED: RNA-binding protein 24 isoform 1 [Pan troglodytes]
gi|402865906|ref|XP_003897142.1| PREDICTED: RNA-binding protein 24 [Papio anubis]
gi|403270855|ref|XP_003927374.1| PREDICTED: RNA-binding protein 24 [Saimiri boliviensis boliviensis]
gi|74761312|sp|Q9BX46.1|RBM24_HUMAN RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24; AltName: Full=RNA-binding
region-containing protein 6
gi|119575782|gb|EAW55378.1| RNA binding motif protein 24, isoform CRA_a [Homo sapiens]
gi|158259565|dbj|BAF85741.1| unnamed protein product [Homo sapiens]
gi|164691129|dbj|BAF98747.1| unnamed protein product [Homo sapiens]
gi|261861082|dbj|BAI47063.1| RNA binding motif protein 24 [synthetic construct]
gi|410210220|gb|JAA02329.1| RNA binding motif protein 24 [Pan troglodytes]
gi|410346986|gb|JAA40725.1| RNA binding motif protein 24 [Pan troglodytes]
gi|431913274|gb|ELK14952.1| RNA-binding protein 24 [Pteropus alecto]
Length = 236
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
+RP E TN +V L + TD LR F FG+V A ++K S ++GFGFV Y
Sbjct: 244 ERPDIEDWTNCYVKNLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDA 303
Query: 90 EAAGKAIEGMDGKV 103
+ A A+EG+ GK
Sbjct: 304 DGAHAAVEGLSGKT 317
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR+ F+ +G + A++++ +G S+GFGFV ++T E A A+
Sbjct: 361 VNLYVKNLDDLLQDEELREAFTNYGTITSARVMRD-STGNSRGFGFVCFSTPEEAATAVA 419
Query: 98 GMDGKV 103
M+GK+
Sbjct: 420 EMNGKL 425
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+FV L ++ L DTFS FG ++ K V + +G SKG+G+V Y T EAA +AI
Sbjct: 165 NIFVKNLDPSIDNKALYDTFSLFGNILSCK-VANDPTGQSKGYGYVHYETAEAATEAINK 223
Query: 99 MDG 101
++G
Sbjct: 224 ING 226
>gi|238014210|gb|ACR38140.1| unknown [Zea mays]
gi|414873814|tpg|DAA52371.1| TPA: glycine-rich RNA-binding protein 8 isoform 1 [Zea mays]
gi|414873815|tpg|DAA52372.1| TPA: glycine-rich RNA-binding protein 8 isoform 2 [Zea mays]
gi|414873816|tpg|DAA52373.1| TPA: glycine-rich RNA-binding protein 8 isoform 3 [Zea mays]
Length = 205
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 41/62 (66%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
F+ LS TTDE+L+D FS FG + AK+V + SG S+GFGFV + +A AIEGM
Sbjct: 9 CFIGNLSWSTTDESLKDAFSKFGNLTEAKVVLDKFSGRSRGFGFVTFDEKQAMEDAIEGM 68
Query: 100 DG 101
+G
Sbjct: 69 NG 70
>gi|348533904|ref|XP_003454444.1| PREDICTED: RNA-binding protein 24-like [Oreochromis niloticus]
Length = 235
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A +A +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRASADRACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A R+I P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRVIQP 97
>gi|321249350|ref|XP_003191429.1| single-stranded DNA binding protein [Cryptococcus gattii WM276]
gi|317457896|gb|ADV19642.1| single-stranded DNA binding protein, putative [Cryptococcus gattii
WM276]
Length = 442
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+ E +TN+FV LS ++ L+ F + GEVV A++V R+S S+GFG+V++A LEA+
Sbjct: 189 EEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLEAS 248
Query: 93 GKAIEGMDG 101
KAIE DG
Sbjct: 249 AKAIE-KDG 256
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
Q+ P+ L++ LS T++ + + F G+V ++ R++G KGFG+V+++++E A
Sbjct: 289 QSPPAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVEDA 348
Query: 93 GKAIEGMDG 101
A++ M+G
Sbjct: 349 SAALKAMNG 357
>gi|410905335|ref|XP_003966147.1| PREDICTED: RNA-binding protein 24-like [Takifugu rubripes]
Length = 235
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A +A +A +
Sbjct: 12 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRASADRACK 71
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A R+I P
Sbjct: 72 DPNPIIDGRKANVNLAYLGAKPRVIQP 98
>gi|357122080|ref|XP_003562744.1| PREDICTED: uncharacterized protein LOC100841917 [Brachypodium
distachyon]
Length = 324
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S+ LFV GLS T D TL+D FS +G+V A+++ R++G SKGFGF+ Y + EAA A
Sbjct: 30 SSSKLFVGGLSYATDDPTLKDAFSHYGDVCEARVIIDRDTGRSKGFGFITYTSSEAAAAA 89
Query: 96 IEGMDGK 102
I MDGK
Sbjct: 90 ISAMDGK 96
>gi|326426729|gb|EGD72299.1| napor protein short isoform [Salpingoeca sp. ATCC 50818]
Length = 353
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 14 RRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHR 73
++ ++ +P+ + PQ+ + P++NLF+ L + D +L TF +FG V+ +K+ +
Sbjct: 247 QQPYAQAPYGGAARAPQK-EGPPNSNLFIYHLPQELNDHSLAATFMSFGNVISSKVFVDK 305
Query: 74 ESGYSKGFGFVKYATLEAAGKAIEGMDG 101
+G SK FGFV Y ++A AI+ M+G
Sbjct: 306 YTGQSKCFGFVSYDNPQSAQAAIQAMNG 333
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV +SK T+ L F FGE+ ++ E G SKG FVKY +A +AI +
Sbjct: 113 LFVGMISKTCTEADLEAMFRPFGEIESVNVLIGPE-GQSKGCAFVKYTNAGSANQAIAKL 171
Query: 100 DGKVSL--CMASFLHALA 115
++ C A + +A
Sbjct: 172 HNSTTMEGCRAPMVVKIA 189
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
PP P+ E + LFV L K +E L +G + I+K++ +G S+G FV +
Sbjct: 15 PP--PKDEDAIKLFVGQLPKSYGEEQLTALLQPYGAIHDMMILKNKMTGESRGCAFVTFC 72
Query: 88 TLEAAGKAIEGMDGKVSL 105
+ ++A AI + K +L
Sbjct: 73 SRQSALSAIADLHEKRTL 90
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 24 SSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
S +P QR + N+FV L K ++ L DTFS FG ++ K++ E+G SKG+GF
Sbjct: 121 SQRDPGQRKRG--VGNVFVKNLEKSIDNKALYDTFSTFGRILSCKVISD-ENG-SKGYGF 176
Query: 84 VKYATLEAAGKAIEGMDG 101
V + T E+AGKAIE M+G
Sbjct: 177 VHFETQESAGKAIEKMNG 194
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL++ L DE LR FS FG + AK++ E+G SKGFGFV +++ + A KA
Sbjct: 329 NLYIKNLDDTINDEHLRKEFSPFGTITSAKVM--MENGRSKGFGFVCFSSSKDAAKASRE 386
Query: 99 MDGKV 103
M+GK+
Sbjct: 387 MNGKL 391
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + D+ L + F+ +G + K++ + G SKGFGFV + + E A
Sbjct: 220 KAKDYTNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTD-DCGRSKGFGFVSFQSHEDA 278
Query: 93 GKAIEGMDGK 102
A++ M+GK
Sbjct: 279 QAAVDDMNGK 288
>gi|544416|sp|Q05966.1|GRP10_BRANA RecName: Full=Glycine-rich RNA-binding protein 10
gi|17819|emb|CAA78513.1| glycine-rich RNA binding protein [Brassica napus]
Length = 169
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+E FV GL+ T D L TFS FGEV+ +KI+ RE+G S+GFGFV + ++
Sbjct: 2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMK 61
Query: 94 KAIEGMDGK 102
AI+ M+GK
Sbjct: 62 DAIDEMNGK 70
>gi|401409932|ref|XP_003884414.1| putative splicing factor [Neospora caninum Liverpool]
gi|325118832|emb|CBZ54384.1| putative splicing factor [Neospora caninum Liverpool]
Length = 550
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++T+ DTFS FG ++ AKI++ E+G S+GFGFV + T EA+ A+
Sbjct: 117 NIFLGNLDPDVDEKTIYDTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAA 176
Query: 99 MDGKVSLC 106
M+G+ +C
Sbjct: 177 MNGQF-IC 183
>gi|330920718|ref|XP_003299119.1| hypothetical protein PTT_10054 [Pyrenophora teres f. teres 0-1]
gi|311327336|gb|EFQ92795.1| hypothetical protein PTT_10054 [Pyrenophora teres f. teres 0-1]
Length = 171
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LF+ GL+ T D+ LR F FG+V A +VK R++G S+GFGFV+YA A A++
Sbjct: 2 SKLFIGGLAWHTDDQALRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRYAQDTEADAAMQ 61
Query: 98 GMDGK 102
M+ +
Sbjct: 62 AMNNE 66
>gi|189203945|ref|XP_001938308.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985407|gb|EDU50895.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 168
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LF+ GL+ T D+ LR F FG+V A +VK R++G S+GFGFV+YA A A++
Sbjct: 2 SKLFIGGLAWHTDDQALRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRYAQDTEADAAMQ 61
Query: 98 GMDGK 102
M+ +
Sbjct: 62 AMNNE 66
>gi|405963050|gb|EKC28659.1| RNA-binding protein 24-A [Crassostrea gigas]
Length = 223
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD++LR+ F FGE+ A ++ R++G S+G+GFV A EAA +A +
Sbjct: 13 TKIFVGGLPYHTTDKSLREFFDKFGEIEEAVVITDRQTGKSRGYGFVTMANREAAERACK 72
Query: 98 G----MDGKVSLCMASFLHALARIIN 119
+DG+ + ++L A R I
Sbjct: 73 DPNPIIDGRKANVNLAYLGAKPRGIQ 98
>gi|345570637|gb|EGX53458.1| hypothetical protein AOL_s00006g324 [Arthrobotrys oligospora ATCC
24927]
Length = 463
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ GL + TTD+ L + S FGEV+ +K + R SG KG+GF K+A++E+A IE
Sbjct: 213 TNVYIKGLPESTTDKQLLEMVSPFGEVISSKAIIDRPSGSCKGYGFAKFASVESAKACIE 272
Query: 98 GMDGK 102
+ +
Sbjct: 273 DLKSR 277
>gi|333381249|ref|ZP_08472931.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
gi|332830219|gb|EGK02847.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
Length = 107
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F++GLS D L+D FS +GE+ AK++ + +G SKG+GFV+ A A KAIE
Sbjct: 2 NIFIAGLSYSINDNDLKDLFSEYGEITSAKVIMDKATGRSKGYGFVELADNAAGQKAIEE 61
Query: 99 MDG 101
++G
Sbjct: 62 LNG 64
>gi|432908495|ref|XP_004077889.1| PREDICTED: RNA-binding protein 24-like isoform 1 [Oryzias latipes]
Length = 237
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A +A +A +
Sbjct: 12 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRASADRACK 71
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A R+I P
Sbjct: 72 DPNPIIDGRKANVNLAYLGAKPRVIQP 98
>gi|383763833|ref|YP_005442815.1| putative RNA-binding region [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381384101|dbj|BAM00918.1| putative RNA-binding region [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 105
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++V LS RTT++ LR TF A+G V A I++ RESG SKGFGFV+ + A AI
Sbjct: 2 NIYVGNLSYRTTEDELRRTFEAYGAVSSASIIRDRESGQSKGFGFVEMPSDSEALAAINA 61
Query: 99 MDGK 102
++ K
Sbjct: 62 LNDK 65
>gi|261880310|ref|ZP_06006737.1| RNA-binding protein [Prevotella bergensis DSM 17361]
gi|270333000|gb|EFA43786.1| RNA-binding protein [Prevotella bergensis DSM 17361]
Length = 112
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 46/64 (71%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+FVS ++ RT +E+L + F+++GEV A+I+ RE+G S+GFGFV+ + A AIE
Sbjct: 2 NIFVSNINYRTQNESLLNLFASYGEVTSARIITDRETGRSRGFGFVEMPNDDEAKAAIEA 61
Query: 99 MDGK 102
++GK
Sbjct: 62 INGK 65
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDK 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 268 NLYVKNLDDSINDERLRREFAPFGTITSAKVM--MEDGRSKGFGFVCFSAPEEATKAVTE 325
Query: 99 MDGKV 103
M+G++
Sbjct: 326 MNGRI 330
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 50 TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
TD+ L++ F +G + K++ ++ G S+GFGFV + +AA +A+ ++GK
Sbjct: 175 TDDKLKEMFEKYGTITSHKVM-IKDDGKSRGFGFVAFEDPDAAEQAVLELNGK 226
>gi|356519721|ref|XP_003528518.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 137
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 26 LNPPQR--------PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
++PPQ P S LFV GLS ++L++ FS+FG+V IV ++SG
Sbjct: 18 VSPPQTQCRFYCSPPSHASSNKLFVGGLSWSVDHKSLKEAFSSFGDVTEVTIVYDKDSGR 77
Query: 78 SKGFGFVKYATLEAAGKAIEGMDGKVSL 105
S+GFGFV ++ + A A + MDGK L
Sbjct: 78 SRGFGFVIFSNEDDAKCAKDAMDGKALL 105
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGASKGYGFVHFETEEAANKSIDK 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 219 VNLYVKNLDDTIDDERLRKEFTPFGTITSAKVM--MEEGRSKGFGFVCFSQPEEATKAVT 276
Query: 98 GMDGKV 103
M+G++
Sbjct: 277 EMNGRI 282
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + + TTDE R+ F FGE+ A + + ESG S+GFGFV + + E+A A++
Sbjct: 235 TNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVD 294
Query: 98 GMDGK 102
++ K
Sbjct: 295 NLNEK 299
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E G SKG+GFV Y T EAA AI+
Sbjct: 143 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKH 201
Query: 99 MDG 101
++G
Sbjct: 202 VNG 204
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N+F+ L K + L DTFSAFG ++ K+ SG SKGFGFV++ T EAA KAI
Sbjct: 116 SGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAALKAI 174
Query: 97 EGMDG 101
E ++G
Sbjct: 175 EKLNG 179
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV L++ T++E L++ F FG + +++ E G SK FGFV + + A +++E
Sbjct: 208 NNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGE-GKSKCFGFVNFENADDAARSVE 266
Query: 98 GMDGK 102
++GK
Sbjct: 267 ALNGK 271
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L D+ L++ F+ FG + K+++ +G S+G GFV +++ E A +A+
Sbjct: 312 NLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRD-PNGISRGSGFVAFSSPEEAARALAE 370
Query: 99 MDGKV 103
M+G++
Sbjct: 371 MNGRM 375
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T+L+V L TD L D F+ G+VV ++ + S S G+G+V Y+ A +A+
Sbjct: 28 TTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRAL 87
Query: 97 E 97
+
Sbjct: 88 D 88
>gi|375146472|ref|YP_005008913.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361060518|gb|AEV99509.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 95
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++VS LS DE L+D F+ +GEV AK++ RE+G S+GFGFV+ A+ KAI
Sbjct: 2 NIYVSNLSFDVHDEDLKDFFAPYGEVTSAKVITDRETGRSRGFGFVEMTDEAASKKAIAE 61
Query: 99 MDG 101
+DG
Sbjct: 62 LDG 64
>gi|170590788|ref|XP_001900153.1| Hypothetical RNA-binding protein C08B11.5 in chromosome II,
putative [Brugia malayi]
gi|158592303|gb|EDP30903.1| Hypothetical RNA-binding protein C08B11.5 in chromosome II,
putative [Brugia malayi]
Length = 375
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV L ++ L DTFSAFG ++ KI++ E+G SKGF FV +A+ EA+ AIE
Sbjct: 101 NVFVGNLDPEVDEKLLFDTFSAFGVILQVPKIMRDAETGXSKGFAFVNFASFEASDSAIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQF-LC 168
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V GL ++ TD L + F G VV + K R + +GFGF+++ E A AI+ M
Sbjct: 15 IYVGGLDEKVTDAILWELFVQAGPVVSVNMPKDRVTSSHQGFGFIEFMGEEDADYAIKIM 74
Query: 100 D 100
+
Sbjct: 75 N 75
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDK 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 296 VNLYVKNLDDSINDERLRREFAPFGTITSAKVM--MEDGRSKGFGFVCFSAPEEATKAVT 353
Query: 98 GMDGKV 103
M+G++
Sbjct: 354 EMNGRI 359
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TD+ L++ F +G + K++ ++ G S+GFGFV + +AA +A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVM-IKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 ELNGK 255
>gi|61098037|ref|NP_001012881.1| RNA-binding protein 24 [Gallus gallus]
gi|53127514|emb|CAG31140.1| hypothetical protein RCJMB04_2l21 [Gallus gallus]
Length = 246
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|21750187|dbj|BAC03738.1| unnamed protein product [Homo sapiens]
Length = 687
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 20/103 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG +P R Q PS LFV GLS+ TT+ETL+++F
Sbjct: 529 AIRLELQGPRG--------------SPNARSQ--PSKTLFVKGLSEDTTEETLKESFDG- 571
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKV 103
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 572 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 612
>gi|451853629|gb|EMD66922.1| hypothetical protein COCSADRAFT_168179 [Cochliobolus sativus
ND90Pr]
Length = 159
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GL+ T D+TLR F FG V A +VK R++G S+GFGFV+YA A A++ M
Sbjct: 4 LFIGGLAWHTDDQTLRSKFEEFGPVEEAVVVKDRDTGRSRGFGFVRYAQETEADAAMQAM 63
Query: 100 DGK 102
+ +
Sbjct: 64 NNE 66
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N+F+ L K + L DTFSAFG ++ K+ SG SKGFGFV++ T EAA KAI
Sbjct: 116 SGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAALKAI 174
Query: 97 EGMDG 101
E ++G
Sbjct: 175 EKLNG 179
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV L++ T++E L++ F FG + +++ E G SK FGFV + + A +++E
Sbjct: 208 NNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGE-GKSKCFGFVNFENADDAARSVE 266
Query: 98 GMDGK 102
++GK
Sbjct: 267 ALNGK 271
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L D+ L++ F+ FG + K+++ +G S+G GFV +++ E A +A+
Sbjct: 312 NLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRD-PNGISRGSGFVAFSSPEEAARALAE 370
Query: 99 MDGKV 103
M+G++
Sbjct: 371 MNGRM 375
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T+L+V L TD L D F+ G+VV ++ + S S G+G+V Y+ A +A+
Sbjct: 28 TTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRAL 87
Query: 97 E 97
+
Sbjct: 88 D 88
>gi|444518299|gb|ELV12076.1| Adenylyl cyclase-associated protein 2 [Tupaia chinensis]
Length = 609
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|268578407|ref|XP_002644186.1| Hypothetical protein CBG17168 [Caenorhabditis briggsae]
Length = 244
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
+FV LSK ++E L+ TF FGEV AK+++ ++ SKG+GFV + + A AI GM
Sbjct: 7 VFVGDLSKDVSNELLKSTFQKFGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAISGM 66
Query: 100 DGK 102
+GK
Sbjct: 67 NGK 69
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T+++V +S +TTD LRD+FS +G++ ++ K ++ + FV+Y E A KAI
Sbjct: 106 NTSVYVGNISPQTTDVDLRDSFSTYGDIAEVRVFK------TQRYAFVRYEKKECATKAI 159
Query: 97 EGMDGK 102
M+GK
Sbjct: 160 MEMNGK 165
>gi|406929710|gb|EKD65230.1| RNA-binding protein [uncultured bacterium]
Length = 95
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 41/64 (64%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LFV LS TTDE L FS G+V+ AK + R SG KGFGFV+ AT E A KAI
Sbjct: 2 STRLFVGRLSYGTTDEQLEQHFSQAGKVISAKAIVDRYSGQGKGFGFVEMATAEEAQKAI 61
Query: 97 EGMD 100
+ ++
Sbjct: 62 QQLN 65
>gi|90093320|ref|NP_001035014.1| RNA-binding protein 24 [Danio rerio]
gi|89130440|gb|AAI14277.1| Zgc:136803 [Danio rerio]
Length = 142
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDCSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRILQP 97
>gi|392404677|ref|YP_006441289.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
gi|390612631|gb|AFM13783.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
Length = 141
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++V L+ TDE LR F AFG+V KIV+ R++G S+GF FV+ E A A+
Sbjct: 2 NIYVGNLAYNATDEELRSAFEAFGQVTSVKIVRDRDTGRSRGFAFVEMEDGEGAQNAVAE 61
Query: 99 MDGK 102
M+GK
Sbjct: 62 MNGK 65
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDK 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 296 VNLYVKNLDDSINDERLRREFAPFGTITSAKVM--MEDGRSKGFGFVCFSAPEEATKAVT 353
Query: 98 GMDGKV 103
M+G++
Sbjct: 354 EMNGRI 359
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TD+ L++ F +G + K++ ++ G S+GFGFV + +AA +A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVM-IKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 ELNGK 255
>gi|355565264|gb|EHH21753.1| hypothetical protein EGK_04889, partial [Macaca mulatta]
Length = 705
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 57/104 (54%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 547 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 589
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E DG++
Sbjct: 590 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEATEDGEID 631
>gi|402593376|gb|EJW87303.1| hypothetical protein WUBG_01785 [Wuchereria bancrofti]
Length = 375
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV L ++ L DTFSAFG ++ KI++ E+G SKGF FV +A+ EA+ AIE
Sbjct: 101 NVFVGNLDPEVDEKLLFDTFSAFGVILQVPKIMRDAETGNSKGFAFVNFASFEASDSAIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQF-LC 168
Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V GL ++ TD L + F G VV + K R + +GFGF+++ E A AI+ M
Sbjct: 15 IYVGGLDEKVTDAILWELFVQAGPVVSVNMPKDRVTSSHQGFGFIEFMGEEDADYAIKIM 74
Query: 100 D 100
+
Sbjct: 75 N 75
>gi|449439327|ref|XP_004137437.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 168
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ +FV GLS + D TLR FS +GEVV A++V ++G KGFGFV ++ E A AI+
Sbjct: 70 SKVFVGGLSYNSDDLTLRVAFSKYGEVVEARVVMDPDTGRCKGFGFVTFSAKEEASSAIK 129
Query: 98 GMDGK 102
+DGK
Sbjct: 130 ALDGK 134
>gi|147906083|ref|NP_001079578.1| RNA-binding protein 24-B [Xenopus laevis]
gi|82247547|sp|Q9I8B3.1|RB24B_XENLA RecName: Full=RNA-binding protein 24-B; AltName: Full=MTR-1a;
AltName: Full=RNA-binding motif protein 24-B
gi|8920429|emb|CAB96420.1| hypothetical protein [Xenopus laevis]
gi|27924271|gb|AAH44956.1| MGC52530 protein [Xenopus laevis]
Length = 224
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|312067511|ref|XP_003136777.1| spliceosomal protein on the X [Loa loa]
gi|307768054|gb|EFO27288.1| spliceosomal protein on the X [Loa loa]
Length = 375
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV L ++ L DTFSAFG ++ KI++ E+G SKGF FV +A+ EA+ AIE
Sbjct: 101 NVFVGNLDPEVDEKLLFDTFSAFGVILQVPKIMRDAETGNSKGFAFVNFASFEASDSAIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQF-LC 168
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V GL ++ TD L + F G VV + K R + +GFGF+++ E A AI+ M
Sbjct: 15 IYVGGLDEKVTDAILWELFVQAGPVVSVNMPKDRVTSSHQGFGFIEFMGEEDADYAIKIM 74
Query: 100 D 100
+
Sbjct: 75 N 75
>gi|296805886|ref|XP_002843767.1| ribonucleoprotein [Arthroderma otae CBS 113480]
gi|238845069|gb|EEQ34731.1| ribonucleoprotein [Arthroderma otae CBS 113480]
Length = 471
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S NLF LS +E LR F FGE+V A+IV RESG S+GFG+V++A +E A KA
Sbjct: 232 SANLFAGNLSWNVDEEWLRSEFEEFGELVGARIVTDRESGRSRGFGYVEFANVEDAVKA 290
>gi|225433489|ref|XP_002264895.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial
[Vitis vinifera]
gi|147833478|emb|CAN75185.1| hypothetical protein VITISV_001912 [Vitis vinifera]
gi|298205231|emb|CBI17290.3| unnamed protein product [Vitis vinifera]
Length = 152
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKY 86
S LF+ GLS T D++L+D FS+FG+VV A+++ R++G S+GFGFV +
Sbjct: 38 SSAKLFIGGLSYGTDDQSLKDAFSSFGDVVEARVITDRDTGRSRGFGFVNF 88
>gi|255579369|ref|XP_002530529.1| RNA binding protein, putative [Ricinus communis]
gi|223529933|gb|EEF31861.1| RNA binding protein, putative [Ricinus communis]
Length = 127
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T LFV GLS TTD+ L + FS +G+VV A IV R SKGFGFV +A+ + A A+
Sbjct: 30 ATKLFVGGLSFYTTDKGLTEAFSQYGQVVEATIVSDRVLDRSKGFGFVTFASEDEAHNAL 89
Query: 97 EGMDGK 102
M+GK
Sbjct: 90 SEMNGK 95
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N+F+ L K +TL DTFSAFG ++ K+ E G SKGFGFV+Y EAA AI
Sbjct: 126 SANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATD-EMGQSKGFGFVQYDKGEAAQSAI 184
Query: 97 EGMDG 101
+ ++G
Sbjct: 185 KSLNG 189
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL++ L D+ L + FS +G++ KI++ +G SKG GFV ++T E A +A+
Sbjct: 322 NLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRD-ANGVSKGSGFVAFSTREEASQALTE 380
Query: 99 MDGKV 103
M+GK+
Sbjct: 381 MNGKM 385
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV LS+ TT E L F A+G + A I+ + G S+ FGF+ + + + A +A+E
Sbjct: 218 NNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMD-GKSRCFGFINFKSPDDAARAVE 276
Query: 98 GMDGK 102
++GK
Sbjct: 277 ELNGK 281
>gi|197308346|gb|ACH60524.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308348|gb|ACH60525.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308350|gb|ACH60526.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308352|gb|ACH60527.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308354|gb|ACH60528.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308356|gb|ACH60529.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308358|gb|ACH60530.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308362|gb|ACH60532.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308364|gb|ACH60533.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308366|gb|ACH60534.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308368|gb|ACH60535.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308370|gb|ACH60536.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308372|gb|ACH60537.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308374|gb|ACH60538.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308376|gb|ACH60539.1| glycine-rich RNA-binding protein [Pseudotsuga menziesii]
gi|197308378|gb|ACH60540.1| glycine-rich RNA-binding protein [Pseudotsuga macrocarpa]
Length = 71
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T D +L++ FS +GEVV +KI+ RE+G S+GFGFV + ++
Sbjct: 4 ADVEFRCFVGGLAWSTDDRSLQEAFSPYGEVVESKIISDRETGRSRGFGFVTFNDEQSMR 63
Query: 94 KAIEGMDG 101
AI+ M+G
Sbjct: 64 DAIDAMNG 71
>gi|224045660|ref|XP_002188575.1| PREDICTED: RNA-binding protein 24 isoform 1 [Taeniopygia guttata]
Length = 226
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|157279879|ref|NP_001098455.1| RNA-binding protein 24 [Bos taurus]
gi|151554292|gb|AAI49346.1| RBM24 protein [Bos taurus]
gi|296474026|tpg|DAA16141.1| TPA: RNA binding motif protein 24 [Bos taurus]
Length = 236
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N+F+ L K +TL DTFSAFG ++ K+ E G SKGFGFV+Y EAA AI
Sbjct: 126 SANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATD-EMGQSKGFGFVQYDKGEAAQSAI 184
Query: 97 EGMDG 101
+ ++G
Sbjct: 185 KSLNG 189
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV LS+ TT E L F A+G + A I+ + G S+ FGF+ + + + A +A+E
Sbjct: 218 NNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMD-GKSRCFGFINFKSPDDAARAVE 276
Query: 98 GMDGK 102
++GK
Sbjct: 277 ELNGK 281
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL------EAA 92
NL++ L D+ L + FS +G++ KI++ +G SKG GFV ++TL E
Sbjct: 322 NLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRD-ANGVSKGSGFVAFSTLPFIQLTEMN 380
Query: 93 GKAIEG 98
GK I G
Sbjct: 381 GKMISG 386
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N+F+ L ++ L DTFSAFG ++ KI ESG SKG+GFV Y T EAA AI
Sbjct: 126 SGNVFIKNLDTSIDNKALHDTFSAFGNILSCKIALD-ESGNSKGYGFVHYETEEAADNAI 184
Query: 97 EGMDG 101
+ +DG
Sbjct: 185 KHVDG 189
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL++ L DE LR FS +G + AK++ E G SKGFGFV +++ + A KA+
Sbjct: 324 NLYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCD-EKGTSKGFGFVCFSSPDEATKAVTE 382
Query: 99 MDGKV 103
M+G++
Sbjct: 383 MNGRM 387
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V L + DE ++ FS FG + A +V+ E G SKGFGF+ + E A KA++
Sbjct: 220 TNVYVKNLDESINDEQFKEMFSKFGPITSA-LVQTDEEGKSKGFGFINFENYEDAHKAVD 278
Query: 98 GMD 100
++
Sbjct: 279 TLN 281
>gi|357146461|ref|XP_003574000.1| PREDICTED: splicing factor 3B subunit 4-like [Brachypodium
distachyon]
Length = 359
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG +V + KI++ E+G S+GFGFV Y + E++ +AIE
Sbjct: 113 NLFIGNLDPEVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIE 172
Query: 98 GMDGKVSLC 106
M+ + LC
Sbjct: 173 AMNNQ-HLC 180
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+V L + ++E L + F G VV+ + K R + +G+GFV++ + E A AI+
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
>gi|242076850|ref|XP_002448361.1| hypothetical protein SORBIDRAFT_06g025810 [Sorghum bicolor]
gi|241939544|gb|EES12689.1| hypothetical protein SORBIDRAFT_06g025810 [Sorghum bicolor]
Length = 727
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL++ L D L FS FG++V AK++K R +G SKG+GFVKY+ + A AI
Sbjct: 429 TNLYIGYLPPTMDDPGLISLFSQFGDIVMAKVIKDRNTGQSKGYGFVKYSDVSQANAAIA 488
Query: 98 GMDG 101
M+G
Sbjct: 489 AMNG 492
>gi|146078133|ref|XP_001463467.1| RNA-binding protein 5-like protein [Leishmania infantum JPCM5]
gi|398010986|ref|XP_003858689.1| RNA-binding protein 5-like protein [Leishmania donovani]
gi|134067553|emb|CAM65832.1| RNA-binding protein 5-like protein [Leishmania infantum JPCM5]
gi|322496899|emb|CBZ31969.1| RNA-binding protein 5-like protein [Leishmania donovani]
Length = 245
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N++V+ L D+ L+D FS +G +V A+I++ ++S SKG+GFV + + +A KAI
Sbjct: 19 SRNVYVASLPLSFDDQQLQDLFSPYGRIVSARIMRAKKSHASKGYGFVMFREVSSAEKAI 78
Query: 97 EGMDGKV 103
EG+ G+V
Sbjct: 79 EGLHGRV 85
>gi|452002034|gb|EMD94493.1| hypothetical protein COCHEDRAFT_1131167 [Cochliobolus
heterostrophus C5]
Length = 125
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GL+ T D+TLR F FG V A +VK R++G S+GFGFV+YA A A++ M
Sbjct: 4 LFIGGLAWHTDDQTLRSKFEEFGPVEEAVVVKDRDTGRSRGFGFVRYAQETEADAAMQAM 63
Query: 100 DGK 102
+ +
Sbjct: 64 NNE 66
>gi|432854500|ref|XP_004067931.1| PREDICTED: nucleolin-like isoform 4 [Oryzias latipes]
Length = 655
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
P+ LFV GLS+ T+D+TLRD+F V A+IV RE+G SKGFGFV + A
Sbjct: 504 PTKTLFVKGLSEDTSDQTLRDSFEG---AVGARIVTDRETGSSKGFGFVDFDNENDCKAA 560
Query: 96 IEGM-DGKVSLCMASFLHA 113
E M DG++ + +A
Sbjct: 561 KEAMEDGEIDGSKVTLDYA 579
>gi|432854494|ref|XP_004067928.1| PREDICTED: nucleolin-like isoform 1 [Oryzias latipes]
Length = 698
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
P+ LFV GLS+ T+D+TLRD+F V A+IV RE+G SKGFGFV + A
Sbjct: 547 PTKTLFVKGLSEDTSDQTLRDSFEG---AVGARIVTDRETGSSKGFGFVDFDNENDCKAA 603
Query: 96 IEGM-DGKVSLCMASFLHA 113
E M DG++ + +A
Sbjct: 604 KEAMEDGEIDGSKVTLDYA 622
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N+F+ L K +TL DTFSAFG ++ K+ E G SKGFGFV+Y EAA AI
Sbjct: 126 SANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATD-EMGQSKGFGFVQYDKGEAAQSAI 184
Query: 97 EGMDG 101
+ ++G
Sbjct: 185 KSLNG 189
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL++ L D+ L + FS +G++ KI++ +G SKG GFV ++T E A +A+
Sbjct: 322 NLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRD-ANGVSKGSGFVAFSTREEASQALTE 380
Query: 99 MDGKV 103
M+GK+
Sbjct: 381 MNGKM 385
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV LS+ TT E L F A+G + A I+ + G S+ FGF+ + + + A +A+E
Sbjct: 218 NNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMD-GKSRCFGFINFKSPDDAARAVE 276
Query: 98 GMDGK 102
++GK
Sbjct: 277 ELNGK 281
>gi|56388843|gb|AAH87677.1| Rbm3 protein [Rattus norvegicus]
Length = 148
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GL+ T ++ L D FS+FG + +VK RE+ S+GFGF+ + E A A+ M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 100 DGKVS--LCMASF-LHALARIINPFPIFL 125
+G+V C +F L A +++ FP+ L
Sbjct: 68 NGEVRPPACRGAFSLSATFFVLSVFPLCL 96
>gi|20257697|gb|AAM16014.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++ AIEGM+
Sbjct: 14 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXXXRSAIEGMN 73
Query: 101 GK 102
GK
Sbjct: 74 GK 75
>gi|255691172|ref|ZP_05414847.1| RNA-binding protein [Bacteroides finegoldii DSM 17565]
gi|260623075|gb|EEX45946.1| hypothetical protein BACFIN_06178 [Bacteroides finegoldii DSM
17565]
Length = 99
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++++GLS RT D L + F+ FGEV AK++ RE+G S+GF FV+ + E KAI+
Sbjct: 2 NIYIAGLSYRTNDADLTNLFAEFGEVSSAKVIMDRETGNSRGFAFVEMTSDEEGQKAIDE 61
Query: 99 MDG 101
++G
Sbjct: 62 LNG 64
>gi|147907395|ref|NP_001080995.1| RNA-binding protein 24-A [Xenopus laevis]
gi|82236599|sp|Q6GQD3.1|RB24A_XENLA RecName: Full=RNA-binding protein 24-A; AltName: Full=RNA-binding
motif protein 24-A; AltName: Full=RRM domain-containing
protein SEB-4; Short=SEB-4; AltName: Full=Xseb-4
gi|49114954|gb|AAH72812.1| Seb4-A-prov protein [Xenopus laevis]
Length = 225
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|423302507|ref|ZP_17280529.1| hypothetical protein HMPREF1057_03670 [Bacteroides finegoldii
CL09T03C10]
gi|408470383|gb|EKJ88917.1| hypothetical protein HMPREF1057_03670 [Bacteroides finegoldii
CL09T03C10]
Length = 99
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++++GLS RT D L + F+ FGEV AK++ RE+G S+GF FV+ + E KAI+
Sbjct: 2 NIYIAGLSYRTNDADLTNLFAEFGEVSSAKVIMDRETGKSRGFAFVEMTSDEEGQKAIDE 61
Query: 99 MDG 101
++G
Sbjct: 62 LNG 64
>gi|371777269|ref|ZP_09483591.1| RNP-1 like RNA-binding protein [Anaerophaga sp. HS1]
Length = 92
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+FV+ LS RT E L FS FGEV AK++ R +GYSK FGFV+ + A AI+
Sbjct: 2 NIFVAKLSARTKSEDLEQLFSEFGEVSSAKVIMDRATGYSKRFGFVEMPNDDEAQTAIDN 61
Query: 99 MDGK 102
+D K
Sbjct: 62 LDDK 65
>gi|149632517|ref|XP_001508012.1| PREDICTED: RNA-binding protein 24-like [Ornithorhynchus anatinus]
Length = 267
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 48 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 107
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 108 DPNPIIDGRKANVNLAYLGAKPRIMQP 134
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE LR+ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA KAIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE L FS FG + AK++ E G S+GFGFV +++ E A KA+
Sbjct: 295 VNLYVKNLDDNINDERLWKEFSPFGTITSAKVMM--EEGRSRGFGFVCFSSPEEATKAVT 352
Query: 98 GMDGKV 103
M+G++
Sbjct: 353 EMNGRI 358
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAF-GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
TN+++ DE LR+ F + G+ + K++ E G SKGFGFV + E A KA+
Sbjct: 191 TNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMD-EGGKSKGFGFVSFERHEDAQKAV 249
Query: 97 EGMDGK 102
+ M+ K
Sbjct: 250 DEMNTK 255
>gi|30681492|ref|NP_850017.1| glycine-rich RNA-binding protein 7 [Arabidopsis thaliana]
gi|330252116|gb|AEC07210.1| glycine-rich RNA-binding protein 7 [Arabidopsis thaliana]
Length = 159
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D L F+ +G+V+ +KI+ RE+G S+GFGFV + +A AIEGM+
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>gi|21553354|gb|AAM62447.1| glycine-rich RNA binding protein 7 [Arabidopsis thaliana]
Length = 175
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D L F+ +G+V+ +KI+ RE+G S+GFGFV + +A AIEGM+
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>gi|227204227|dbj|BAH56965.1| AT2G21660 [Arabidopsis thaliana]
Length = 153
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D L F+ +G+V+ +KI+ RE+G S+GFGFV + +A AIEGM+
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE LR+ FS FG+ + K+++ SG SKGFGFV Y E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDA 244
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 245 NKAVEEMNGK 254
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE LR+ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|15226605|ref|NP_179760.1| glycine-rich RNA-binding protein 7 [Arabidopsis thaliana]
gi|544424|sp|Q03250.1|GRP7_ARATH RecName: Full=Glycine-rich RNA-binding protein 7
gi|16226372|gb|AAL16149.1|AF428381_1 At2g22292/F2G1.7_ [Arabidopsis thaliana]
gi|16301|emb|CAA78711.1| glycine rich protein [Arabidopsis thaliana]
gi|166837|gb|AAA32853.1| RNA-binding protein [Arabidopsis thaliana]
gi|4567224|gb|AAD23639.1| glycine-rich RNA binding protein 7 [Arabidopsis thaliana]
gi|15810032|gb|AAL06943.1| At2g21660/F2G1.7 [Arabidopsis thaliana]
gi|330252115|gb|AEC07209.1| glycine-rich RNA-binding protein 7 [Arabidopsis thaliana]
Length = 176
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D L F+ +G+V+ +KI+ RE+G S+GFGFV + +A AIEGM+
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 143 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGASKGYGFVHFETEEAANKSIDK 201
Query: 99 MDG 101
++G
Sbjct: 202 VNG 204
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 340 NLYVKNLDDTIDDERLRKEFTPFGTITSAKVM--MEEGRSKGFGFVCFSQPEEATKAVTE 397
Query: 99 MDGKV 103
M+G++
Sbjct: 398 MNGRI 402
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + T++ L+D F +G + K++ ++ G S+GFGFV + +AA +A+
Sbjct: 235 TNVYVKNFGEDMTEDKLKDMFEKYGTITSHKVMS-KDDGKSRGFGFVAFEDPDAAEQAVL 293
Query: 98 GMDGK 102
++GK
Sbjct: 294 ELNGK 298
>gi|406883357|gb|EKD30966.1| hypothetical protein ACD_77C00438G0003 [uncultured bacterium]
Length = 117
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+S LS D LR+ F+ +GE+ AK++ RE+G S+GFGFV+ T A KAIE
Sbjct: 2 NIFISNLSWAVRDADLRELFAEYGEISSAKVITDRETGKSRGFGFVEMPTEAEAKKAIEE 61
Query: 99 MD 100
+D
Sbjct: 62 LD 63
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDR 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 276 NLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAVTE 333
Query: 99 MDGKV 103
M+G++
Sbjct: 334 MNGRI 338
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TD+ L++ F +G + K++ ++ G S+GFGFV + +AA +A+
Sbjct: 171 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVM-IKDDGKSRGFGFVAFEDPDAAEQAVL 229
Query: 98 GMDGK 102
++GK
Sbjct: 230 ELNGK 234
>gi|148927167|ref|ZP_01810792.1| RNP-1 like RNA-binding protein [candidate division TM7 genomosp.
GTL1]
gi|147887382|gb|EDK72831.1| RNP-1 like RNA-binding protein [candidate division TM7 genomosp.
GTL1]
Length = 108
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 41/65 (63%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LF+ L+ TTD++LR F+ GEV AK+V R+SG SKGFGFV Y E A AI
Sbjct: 2 SKKLFIGSLAYATTDDSLRAHFAEKGEVEEAKVVTDRDSGRSKGFGFVTYVNDEDADTAI 61
Query: 97 EGMDG 101
+ +D
Sbjct: 62 KELDN 66
>gi|124021001|sp|Q5ZMA3.2|RBM24_CHICK RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24
Length = 225
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|441623518|ref|XP_003263507.2| PREDICTED: RNA-binding protein 24, partial [Nomascus leucogenys]
Length = 196
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDR 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 268 NLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAVTE 325
Query: 99 MDGKV 103
M+G++
Sbjct: 326 MNGRI 330
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 50 TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
TD+ L+D F +G + K++ ++ G S+GFGFV + +AA +A+ ++GK
Sbjct: 175 TDDKLKDMFEKYGTITSHKVM-IKDDGKSRGFGFVAFEDPDAAEQAVLELNGK 226
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDR 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 296 VNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAVT 353
Query: 98 GMDGKV 103
M+G++
Sbjct: 354 EMNGRI 359
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TD+ L++ F +G + K++ ++ G S+GFGFV + +AA +A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVM-IKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 ELNGK 255
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDR 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 267 VNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAVT 324
Query: 98 GMDGKV 103
M+G++
Sbjct: 325 EMNGRI 330
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 50 TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
TD+ L++ F +G + K++ ++ G S+GFGFV + +AA +A+ ++GK
Sbjct: 175 TDDKLKEMFEKYGTITSHKVM-IKDDGKSRGFGFVAFEDPDAAEQAVLELNGK 226
>gi|119591366|gb|EAW70960.1| nucleolin, isoform CRA_a [Homo sapiens]
Length = 490
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 20/103 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG +P R Q PS LFV GLS+ TT+ETL+++F
Sbjct: 332 AIRLELQGPRG--------------SPNARSQ--PSKTLFVKGLSEDTTEETLKESFDG- 374
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKV 103
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 375 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 415
>gi|20257701|gb|AAM16016.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D +L + FS +GEV+ +KI+ RE+ S+GFGFV ++ AIEGM+
Sbjct: 20 FVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXXXRSAIEGMN 79
Query: 101 GK 102
GK
Sbjct: 80 GK 81
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE LR+ FS FG+ + K+++ SG SKGFGFV Y E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDA 244
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 245 NKAVEEMNGK 254
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|440293224|gb|ELP86367.1| polyadenylate-binding protein, putative [Entamoeba invadens IP1]
Length = 519
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
+ + E TNLFV + K + + ++D F FGE++ K+ + E+G S GFG+VKY T+E
Sbjct: 96 KQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVN-ENGASNGFGYVKYRTIE 154
Query: 91 AAGKAIE 97
AA KA+E
Sbjct: 155 AALKAVE 161
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 26 LNPPQR--PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
++ PQ P + + +FVS LSK T+ L SA E A + R Y +
Sbjct: 1 MSAPQNLFPNFDDNKTIFVSSLSKNVTESLLYKEISAKFESQVASVHVSRNEHYDTAIAY 60
Query: 84 VKYATLEAAGKAIEGMDGKV 103
V T EAA KAIE M+G +
Sbjct: 61 VNMNTHEAAKKAIETMNGAL 80
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDR 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 296 VNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAVT 353
Query: 98 GMDGKV 103
M+G++
Sbjct: 354 EMNGRI 359
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TD+ L++ F +G + K++ ++ G S+GFGFV + +AA +A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVM-IKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 ELNGK 255
>gi|389741761|gb|EIM82949.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 145
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S ++V LS TTD+TLR FS FG ++ + +++ RE+G S+GFGFV + T E A AI
Sbjct: 2 SAKVYVGNLSWNTTDDTLRQAFSEFGAILDSIVMRDRETGRSRGFGFVTFGTPEEADAAI 61
Query: 97 EGMD 100
++
Sbjct: 62 NNLN 65
>gi|167533335|ref|XP_001748347.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773159|gb|EDQ86802.1| predicted protein [Monosiga brevicollis MX1]
Length = 406
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 21 PFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSK 79
P + + E NL++ L+ ++ L DTFSAFG ++ H K+++ E+G+SK
Sbjct: 83 PIRVNKSASHSKHMEVGANLYIGNLAPEVDEKLLFDTFSAFGVILQHPKVMRDLETGHSK 142
Query: 80 GFGFVKYATLEAAGKAIEGM 99
GF F+ YAT EA+ AI+ M
Sbjct: 143 GFAFINYATFEASDAAIKAM 162
>gi|118354822|ref|XP_001010672.1| RNA-binding motif protein 8 [Tetrahymena thermophila]
gi|89292439|gb|EAR90427.1| RNA-binding motif protein 8 [Tetrahymena thermophila SB210]
Length = 124
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV+GL + TTD+ + D F FGE+ + + R SGY KG+ V+Y L+ A AI+G+
Sbjct: 39 LFVTGLHEETTDDQIYDAFGEFGEIKNCHLNLDRRSGYVKGYALVQYENLQHAQDAIKGL 98
Query: 100 DGKVSL 105
+G L
Sbjct: 99 NGTTIL 104
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDR 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 296 VNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAVT 353
Query: 98 GMDGKV 103
M+G++
Sbjct: 354 EMNGRI 359
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TD+ L+D F +G + K++ ++ G S+GFGFV + +AA +A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVM-IKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 ELNGK 255
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDR 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 296 VNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAVT 353
Query: 98 GMDGKV 103
M+G++
Sbjct: 354 EMNGRI 359
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TD+ L++ F +G + K++ ++ G S+GFGFV + +AA +A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVM-IKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 ELNGK 255
>gi|20067397|emb|CAC84501.1| putative nucleolin [Triturus carnifex]
Length = 338
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+E S LFV GLS TT+ETL++ AF V +IV R+SG SKGFGFV ++T E A
Sbjct: 195 SEKSKTLFVRGLSADTTEETLKE---AFDGAVGTRIVTDRDSGASKGFGFVDFSTAEDAS 251
Query: 94 KAIEGM-DGKVS 104
A E M DG++
Sbjct: 252 AAKEAMEDGEID 263
>gi|45360685|ref|NP_989016.1| RNA-binding protein 24 [Xenopus (Silurana) tropicalis]
gi|82237576|sp|Q6P8A7.1|RBM24_XENTR RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24
gi|38174185|gb|AAH61322.1| RNA binding motif protein 24 [Xenopus (Silurana) tropicalis]
Length = 226
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDR 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 296 VNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAVT 353
Query: 98 GMDGKV 103
M+G++
Sbjct: 354 EMNGRI 359
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TD+ L+D F +G + K++ ++ G S+GFGFV + +AA +A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVM-IKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 ELNGK 255
>gi|393784278|ref|ZP_10372444.1| hypothetical protein HMPREF1071_03312 [Bacteroides salyersiae
CL02T12C01]
gi|392666318|gb|EIY59833.1| hypothetical protein HMPREF1071_03312 [Bacteroides salyersiae
CL02T12C01]
Length = 115
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F++GLS +D L + F+ +GEV A+++ RE+G SKG+GFV+ A EA KAI
Sbjct: 2 NIFIAGLSYNISDSDLTELFAEYGEVASARVISDRETGRSKGYGFVEMADEEAGDKAIAA 61
Query: 99 MD 100
++
Sbjct: 62 LN 63
>gi|365986018|ref|XP_003669841.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
gi|343768610|emb|CCD24598.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
Length = 426
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+EPS LF+ LS + + +TFS +GE++ +I H E+ KGFG+V+++ +E A
Sbjct: 266 SEPSDTLFLGNLSFNADKDNIYETFSKYGEIISVRIPTHPETEQPKGFGYVQFSNIEDAK 325
Query: 94 KAIEGMDGK 102
KA+EG+ G+
Sbjct: 326 KALEGLQGE 334
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
EP+T +FV LS DE L+ F G VV A+++ R + S+G+G+V + A
Sbjct: 168 GEPAT-IFVGRLSWSIDDEWLKKEFEHIGGVVGARVIYERGTDRSRGYGYVDFEDKSYAE 226
Query: 94 KAIEGMDGK 102
KAI+ M GK
Sbjct: 227 KAIQEMQGK 235
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDR 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 296 VNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAVT 353
Query: 98 GMDGKV 103
M+G++
Sbjct: 354 EMNGRI 359
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TD+ L++ F +G + K++ ++ G S+GFGFV + +AA +A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVM-IKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 ELNGK 255
>gi|308480880|ref|XP_003102646.1| hypothetical protein CRE_03259 [Caenorhabditis remanei]
gi|308261080|gb|EFP05033.1| hypothetical protein CRE_03259 [Caenorhabditis remanei]
Length = 358
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
++FV LSK ++E L+ TF +GEV AK+++ ++ SKG+GFV + + A AI G
Sbjct: 134 HVFVGDLSKDVSNELLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAIAG 193
Query: 99 MDGK 102
M+GK
Sbjct: 194 MNGK 197
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T+++V +S++TT+ LR++FS +G++ ++ K ++ + FV+Y E A KAI
Sbjct: 234 NTSVYVGNISQQTTETDLRESFSTYGDIAEVRVFK------TQRYAFVRYDKKECATKAI 287
Query: 97 EGMDGK-----VSLCMASFLHAL-ARIINPFPIFL 125
M+GK C A+ ++ +NP PI L
Sbjct: 288 MEMNGKELTGNQVRCSWGRTQAVPSQALNPLPIDL 322
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGASKGYGFVHFETEEAANKSIDK 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV ++ E A KA+
Sbjct: 296 VNLYVKNLDDTIDDERLRKEFTPFGTITSAKVM--MEEGRSKGFGFVCFSQPEEATKAVT 353
Query: 98 GMDGKV 103
M+G++
Sbjct: 354 EMNGRI 359
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TD+ L++ F +G + K++ ++ G S+GFGFV + +AA +A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVM-SKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 ELNGK 255
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + TDE L++ FSAFG + +++K E G S+GFGFV YA E A KA+
Sbjct: 191 TNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKD-EKGRSRGFGFVNYAHHEDAQKAVN 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ + + ++ L DTFSAFG ++ K+V E G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNMDESIDNKALYDTFSAFGNILSCKVVCD-EKG-SKGYGFVHFETQEAANRAIET 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
R Q NL+V L DE LR F+ +G + AK++ + SKGFGFV +++ E
Sbjct: 287 RIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMT--DGSQSKGFGFVCFSSPE 344
Query: 91 AAGKAIEGMDGKV 103
A KA+ M+G++
Sbjct: 345 EATKAVTEMNGRI 357
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N+F+ L K ++TL +TFS+FG ++ K+ E+G SKGFGFV+Y EAA AI
Sbjct: 133 SANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAMD-EAGQSKGFGFVQYEKEEAAQNAI 191
Query: 97 EGMDG 101
+ ++G
Sbjct: 192 KSLNG 196
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL++ L D+ LR+ FS FG++ K+++ ++G SKG GFV ++T E A +A+
Sbjct: 329 NLYLKNLDDSIGDDQLRELFSNFGKITSYKVMRD-QNGLSKGSGFVAFSTREEASQALTE 387
Query: 99 MDGKV 103
M+GK+
Sbjct: 388 MNGKM 392
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV LS+ TT E L F +G + A +V G S+ FGF+ + +AA +A++
Sbjct: 225 NNVFVKNLSESTTKEDLLKVFGEYGSITSA-VVMIGMDGKSRCFGFINFENPDAASRAVQ 283
Query: 98 GMDGK 102
++GK
Sbjct: 284 ELNGK 288
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
Q P+T+L+V L +D L + FS G+VV ++ + S S G+ +V ++ A
Sbjct: 41 QPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDA 100
Query: 93 GKAIEGMD 100
+A+E ++
Sbjct: 101 ARALEVLN 108
>gi|388567211|ref|ZP_10153648.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
gi|388265594|gb|EIK91147.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
Length = 97
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ L+V L D++LR FS FG V AK++ R+SG SKGFGFV+ A+ A AI
Sbjct: 2 SSKLYVGNLPYSVNDDSLRHNFSEFGNVASAKVMTDRDSGRSKGFGFVEMASEAEAQAAI 61
Query: 97 EGMDGK 102
G++G+
Sbjct: 62 NGLNGQ 67
>gi|313237737|emb|CBY12875.1| unnamed protein product [Oikopleura dioica]
Length = 307
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG ++ KI++ ++G SKGF F+ Y++ EAA A+E
Sbjct: 99 NLFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINYSSFEAADAALE 158
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 159 AMNGQY-LC 166
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
++V GL ++ T+ L + F G VV+ + K R + +G+GFV++ + + A AI+
Sbjct: 13 VYVGGLDEKVTEHLLAELFIQVGPVVNCHMPKDRVTQTHQGYGFVEFLSEDDADYAIK 70
>gi|227206222|dbj|BAH57166.1| AT2G21660 [Arabidopsis thaliana]
Length = 99
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D L F+ +G+V+ +KI+ RE+G S+GFGFV + +A AIEGM+
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>gi|241752336|ref|XP_002401050.1| RNA-binding protein precursor, putative [Ixodes scapularis]
gi|215508305|gb|EEC17759.1| RNA-binding protein precursor, putative [Ixodes scapularis]
Length = 195
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
TNL ++ L + TDE R F++ G + +KIV+H+ +GYS GFGFV Y ++E A +A+
Sbjct: 9 QTNLIINYLPQTLTDEEFRSLFTSIGPIKSSKIVRHKATGYSYGFGFVDYQSIEDAARAV 68
Query: 97 EGMDG 101
++G
Sbjct: 69 GTLNG 73
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 22/93 (23%)
Query: 31 RPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVH--------------------AK 68
RP E NL++ G+ K E F+ FG ++
Sbjct: 87 RPGGETIKHANLYIRGIPKHYPPEQAEKLFADFGRLIQFRVLKDDSGSGNKGYGSVTKVN 146
Query: 69 IVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
I++ +G SKGFGFV A + AIE ++G
Sbjct: 147 IIRDTSTGLSKGFGFVTMANYQDCVWAIEALNG 179
>gi|392579826|gb|EIW72953.1| hypothetical protein TREMEDRAFT_72942 [Tremella mesenterica DSM
1558]
Length = 475
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+AEP+ N++V GLS +E L F + GEVV A+++ ++ SKGFGFV++ T E A
Sbjct: 207 EAEPTANVYVGGLSWNVDNEWLASEFQSCGEVVEARVMFDHQNQKSKGFGFVRFKTAEEA 266
Query: 93 GKAI----EGMDGKVSLC 106
KA+ +DG+ C
Sbjct: 267 AKAVAMTGHEIDGRAIRC 284
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
P+ L++ GLS ++ + + F FG++ + RE+G KGFG+V++A ++ A A
Sbjct: 309 PAATLYLGGLSYDLNEDAVYEAFGDFGDIQRVSLPTDRETGAPKGFGYVEFADVDQATAA 368
Query: 96 IEGMDGK 102
+E M+GK
Sbjct: 369 LEAMNGK 375
>gi|313240198|emb|CBY32547.1| unnamed protein product [Oikopleura dioica]
Length = 307
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG ++ KI++ ++G SKGF F+ Y++ EAA A+E
Sbjct: 99 NLFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINYSSFEAADAALE 158
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 159 AMNGQY-LC 166
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
++V GL ++ T+ L + F G VV+ + K R + +G+GFV++ + + A AI+
Sbjct: 13 VYVGGLDEKVTEHLLAELFIQVGPVVNCHMPKDRVTQTHQGYGFVEFLSEDDADYAIK 70
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V +S TDE RD F+ +G+V + + + E G S+GFGFV + T E A KA+E
Sbjct: 246 TNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSRGFGFVNFTTHECAAKAVE 304
Query: 98 GMDGK 102
++GK
Sbjct: 305 ELNGK 309
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+F+ L ++ L DTF+AFG ++ K+ + E+G SKG+GFV Y T EAA +AI+
Sbjct: 154 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIK 211
>gi|401416391|ref|XP_003872690.1| RNA-binding protein 5-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488915|emb|CBZ24164.1| RNA-binding protein 5-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 245
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 16 LFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRES 75
+ P + SLN Q S N++V+ L D+ L+D FS +G +V A+I++ ++S
Sbjct: 1 MMHPQPVAQSLNDDTLKQ---SRNVYVASLPLSFDDQQLQDLFSPYGRIVSARIMRAKKS 57
Query: 76 GYSKGFGFVKYATLEAAGKAIEGMDGKV 103
SKG+GFV + +A KAIEG+ G+V
Sbjct: 58 HASKGYGFVMFREASSAEKAIEGLHGRV 85
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 54/101 (53%), Gaps = 11/101 (10%)
Query: 10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
PR R T F P R Q +PS N+F+ L K ++ L DTFSA
Sbjct: 62 PRDSERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
FG ++ K+V E+G SKG+GFV + T EAA +AIE M+G
Sbjct: 122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|443918492|gb|ELU38942.1| splicing factor 3b subunit 4 [Rhizoctonia solani AG-1 IA]
Length = 325
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 21 PFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEV-VHAKIVKHRESGYSK 79
P + + + Q + NLF+ GL + L DTFSAFG + AK+ + SG SK
Sbjct: 83 PIRVNKSSSDKKQLDVGANLFIGGLDLNVDERLLYDTFSAFGVMSTTAKVARDPASGESK 142
Query: 80 GFGFVKYATLEAAGKAIEGMDGK 102
G+GFV Y E+A AIE M+G+
Sbjct: 143 GYGFVSYTDFESADAAIEAMNGQ 165
>gi|340502094|gb|EGR28811.1| splicing factor subunit 4, putative [Ichthyophthirius multifiliis]
Length = 267
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
E N+F+ L + T++ L DTFS FG ++ +IV+ ++ SKG+ FV Y EAA
Sbjct: 96 EVGANIFIGNLDQSITEQQLHDTFSQFGLIISRRIVRDPDNDESKGYAFVSYDNFEAADA 155
Query: 95 AIEGMDGK 102
AI M+G+
Sbjct: 156 AINTMNGQ 163
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
P ++V G+ ++ T E L + FS G VV+ + K + +G +G+GFV++ + E A +
Sbjct: 10 PDATIYVGGIDQKVTQEVLWELFSQCGIVVNVHLPKDKITGEHQGYGFVEFKSEEDADYS 69
Query: 96 IEGM 99
I+ M
Sbjct: 70 IKIM 73
>gi|302814001|ref|XP_002988685.1| hypothetical protein SELMODRAFT_18499 [Selaginella moellendorffii]
gi|300143506|gb|EFJ10196.1| hypothetical protein SELMODRAFT_18499 [Selaginella moellendorffii]
Length = 135
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GLS TTD L D FS +G V+ AK+V R++ S+GFGFV + + AI+GM
Sbjct: 11 FVGGLSWATTDRNLEDAFSPYGTVIEAKVVLDRDTERSRGFGFVTFGDENSMQDAIDGMH 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>gi|121705230|ref|XP_001270878.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
gi|119399024|gb|EAW09452.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
Length = 133
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GL+ TTD+ LR F FG+V A +VK R++ S+GFGFV++++ A KA++ M
Sbjct: 4 LFIGGLAWHTTDDALRQGFEQFGQVEEAIVVKDRDTNRSRGFGFVRFSSDSDADKAMDAM 63
Query: 100 DGK 102
+ +
Sbjct: 64 NNQ 66
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+ + E+G SKG+GFV + T EAA K+IE
Sbjct: 91 NVFIKNLDKSIDNKALFDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK 149
Query: 99 MDG 101
++G
Sbjct: 150 VNG 152
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR F+ FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 288 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTE 345
Query: 99 MDGKV 103
M+G++
Sbjct: 346 MNGRI 350
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + +DE L+D F +G + K++ +++ G S+GFGFV + +AA +A
Sbjct: 183 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVM-YKDDGNSRGFGFVAFEDPDAAERACI 241
Query: 98 GMDGK 102
++GK
Sbjct: 242 ELNGK 246
>gi|168033388|ref|XP_001769197.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679462|gb|EDQ65909.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 83
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
+ +++V GLS ++++T++ F FGEVV KIV RESG S+GFGFV + +A A
Sbjct: 3 DANSVYVGGLSYESSEDTVKKAFMEFGEVVSVKIVYDRESGESRGFGFVSFTNPRSATMA 62
Query: 96 IEGMDG 101
I MDG
Sbjct: 63 IRDMDG 68
>gi|57899926|dbj|BAD87838.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 203
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GLS T + L+D FS G ++ K++ H +G SKG+GFVK+A+ + A A+ M
Sbjct: 126 LFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKM 185
Query: 100 DGKV 103
G+V
Sbjct: 186 GGEV 189
>gi|242048440|ref|XP_002461966.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
gi|241925343|gb|EER98487.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
Length = 294
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 20 SPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSK 79
+P S ++ P R Q+ PS ++V L + D L FS G+VV A++V RE+G S+
Sbjct: 193 APRGSRVDRPPR-QSGPSLRIYVGNLPWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSR 251
Query: 80 GFGFVKYATLEAAGKAIEGMDGK 102
GFGFV AT + AI +DG+
Sbjct: 252 GFGFVTMATQDELDDAIAALDGQ 274
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 26 LNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVK 85
+ PP+ + ++V L E L F G V A+++ +RE+ S+GFGFV
Sbjct: 110 VEPPEEAK------VYVGNLPYDVDSERLAQLFEQAGVVEVAEVIYNRETDRSRGFGFVT 163
Query: 86 YATLEAAGKAIE 97
+T+E A KA+E
Sbjct: 164 MSTVEEADKAVE 175
>gi|255077948|ref|XP_002502554.1| predicted protein [Micromonas sp. RCC299]
gi|226517819|gb|ACO63812.1| predicted protein [Micromonas sp. RCC299]
Length = 325
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 15 RLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHR 73
+LF P ++ + + NLFV L ++ L DTFSAFG V+ KI++
Sbjct: 96 KLFG-KPIRANKASVDKKSTDVGANLFVGNLDPDMDEKLLYDTFSAFGVVITTPKIMRDP 154
Query: 74 ESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC 106
++G S+GFGFV Y + EA+ AIE M+G+ LC
Sbjct: 155 DTGNSRGFGFVSYDSFEASDAAIEAMNGQF-LC 186
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
++V L + T+E + + F G VV+ + K R S +G+ FV+Y E A AI+
Sbjct: 33 VYVGNLDPQVTEEIVWEVFVQAGPVVNVYMPKDRVSNAHQGYAFVEYRGEEDADYAIK 90
>gi|326491331|dbj|BAK05765.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 42/67 (62%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
E FV LS TTDE+L+D FS +G+V AK+V + SG S+GF FV + +A +
Sbjct: 40 EDEYRCFVGNLSWSTTDESLKDAFSKYGKVTEAKVVMDKFSGRSRGFAFVTFDEKKAMEE 99
Query: 95 AIEGMDG 101
AIE M+G
Sbjct: 100 AIEDMNG 106
>gi|123399974|ref|XP_001301574.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882772|gb|EAX88644.1| hypothetical protein TVAG_023270 [Trichomonas vaginalis G3]
Length = 245
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
EPSTN+F++ + + L++ S +GE+V KI+ + E+G S+ FGFV++ L A
Sbjct: 42 EPSTNVFINYIPPNYNQDDLKNLCSQYGEIVCCKIMINLETGQSRCFGFVRFKELSQAAA 101
Query: 95 AIEGMDG 101
AI G+DG
Sbjct: 102 AIRGIDG 108
>gi|300797848|ref|NP_001178029.1| RNA-binding protein 24 [Rattus norvegicus]
Length = 236
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|298707500|emb|CBJ30102.1| Uncharacterized protein [Ectocarpus siliculosus]
Length = 470
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG- 98
+FV GL T D++LR F +GE+ A +V + + SKG+GFV + +++ A A+E
Sbjct: 165 IFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENP 224
Query: 99 ---MDGKVSLCMASFLHALARIINPFP 122
+DG+VSLC + L R P P
Sbjct: 225 EKMIDGRVSLCNLAAL----RSSQPLP 247
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKY----ATLEAAGKA 95
+FV GLS TT E+LR FS FGE+ + R SG SKG+GFV + A +
Sbjct: 283 IFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEP 342
Query: 96 IEGMDGKVSLC 106
+ +DG+++ C
Sbjct: 343 EKQLDGRLTHC 353
>gi|409080475|gb|EKM80835.1| hypothetical protein AGABI1DRAFT_112564 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197375|gb|EKV47302.1| hypothetical protein AGABI2DRAFT_192533 [Agaricus bisporus var.
bisporus H97]
Length = 168
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 28 PPQRPQAEPST-NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKY 86
PP+R S N LS TTDETLR FS FG+V+ + +++ R++G S+GFGFV +
Sbjct: 16 PPEREAKLMSVKNTVYRNLSWNTTDETLRQAFSDFGQVLDSIVMRDRDTGRSRGFGFVTF 75
Query: 87 ATLEAAGKAIEGMD 100
+ A AI G++
Sbjct: 76 SNSGEADAAINGLN 89
>gi|195431559|ref|XP_002063804.1| GK15864 [Drosophila willistoni]
gi|194159889|gb|EDW74790.1| GK15864 [Drosophila willistoni]
Length = 556
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T+L V GL +TT+++LR+ F +FGEV+ A+I K +SG SKGFGFV++ + EA + +
Sbjct: 107 TDLIVLGLPWKTTEDSLREYFESFGEVLMAQIKKDVKSGQSKGFGFVRFGSYEAQMRVLS 166
Query: 98 G---MDGK 102
+DG+
Sbjct: 167 NRHLIDGR 174
>gi|432864810|ref|XP_004070428.1| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Oryzias
latipes]
Length = 299
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
+ +++L V GL +TT++ L+D FS FGEV+ ++ + ++G SKGFGFV++A E K
Sbjct: 102 QKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFADYETQTK 161
Query: 95 AIEG---MDGKVSLC 106
I +DG+ C
Sbjct: 162 VITQRHMIDGRWCDC 176
>gi|422295561|gb|EKU22860.1| glycine-rich rna-binding protein 4 [Nannochloropsis gaditana
CCMP526]
Length = 186
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 29 PQRP----QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFV 84
P RP Q+E LFV LS RT LR+ F FG +V + ++++RE+G S+GFGFV
Sbjct: 17 PPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFV 76
Query: 85 KYATLEAAGKAIEGMD 100
Y A AI MD
Sbjct: 77 VYEQKHEADAAISRMD 92
>gi|412988957|emb|CCO15548.1| predicted protein [Bathycoccus prasinos]
Length = 247
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV L ++ L DTFSAFG V+ A K+ + ESG S+GFGFV++ + EA+ +AIE
Sbjct: 45 NVFVGNLDAEIDEKMLYDTFSAFGSVITAPKVQRDPESGESRGFGFVQFDSFEASDRAIE 104
Query: 98 GMDGK 102
M G+
Sbjct: 105 AMHGQ 109
>gi|298528161|ref|ZP_07015565.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511813|gb|EFI35715.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 84
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL+V L TT+ LRD F+ +GEV AKI++ RE+G S+GFGFV+ A +AIE
Sbjct: 2 TNLYVGNLPWSTTEAQLRDLFAEYGEVSSAKIIEDRETGRSRGFGFVEMEN--GADEAIE 59
Query: 98 GMDG 101
++G
Sbjct: 60 SLNG 63
>gi|351725469|ref|NP_001238373.1| glycine-rich RNA-binding protein [Glycine max]
gi|5726567|gb|AAD48471.1|AF169205_1 glycine-rich RNA-binding protein [Glycine max]
Length = 160
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL+ T D L FS +GE+V KI+ RE+G S+GFGFV +A+ ++
Sbjct: 4 ADVEYRCFVGGLAWATDDHALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMK 63
Query: 94 KAIEGMDGK 102
AI M+G+
Sbjct: 64 DAIGAMNGQ 72
>gi|409046552|gb|EKM56032.1| hypothetical protein PHACADRAFT_145047 [Phanerochaete carnosa
HHB-10118-sp]
Length = 322
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEV-VHAKIVKHRESGYSKGFGFVKYATL 89
+ Q + NLF+ L + + L DTFSAFG + AKI + +SG SKG+GFV Y
Sbjct: 92 KKQLDVGANLFIGNLDENVDERLLYDTFSAFGVMATTAKIARDPQSGQSKGYGFVSYTDF 151
Query: 90 EAAGKAIEGMDGK 102
E++ AIE M+G+
Sbjct: 152 ESSDAAIESMNGQ 164
>gi|375143372|ref|YP_005005813.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361057418|gb|AEV96409.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 104
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++VS LS DE L+D F+ +GEV AK++ RE+G S+GFGFV+ A+ KAI
Sbjct: 2 NIYVSNLSFDVQDEDLKDFFAPYGEVSSAKVITDRETGRSRGFGFVEMTDEAASKKAIAE 61
Query: 99 MDG 101
+DG
Sbjct: 62 LDG 64
>gi|327301915|ref|XP_003235650.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
gi|326463002|gb|EGD88455.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
Length = 149
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GL+ TTD+TLR+ FS FG + A +VK R++ S+GFGFV++++ A A+ M
Sbjct: 6 LFIGGLAWHTTDDTLREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAALNAM 65
Query: 100 -----DGKV 103
DG+V
Sbjct: 66 NNQEFDGRV 74
>gi|156837267|ref|XP_001642663.1| hypothetical protein Kpol_1076p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156113219|gb|EDO14805.1| hypothetical protein Kpol_1076p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 526
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 11/107 (10%)
Query: 7 VAAPRGL-----RRLFST--SPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFS 59
VAAP GL R+ S P SS P + ++ S +F+ GL+ TT+ETLRD F+
Sbjct: 119 VAAPGGLPWEQLRQTMSQLQQPADSS-RPVKADLSKDSCKMFIGGLNWETTEETLRDYFN 177
Query: 60 AFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKV 103
+G+VV KI+K +G S+GFGF+ + + + ++ +DGKV
Sbjct: 178 KYGKVVELKIMKDNNTGRSRGFGFLTFEDATSVDEVVKTQHILDGKV 224
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 38/67 (56%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
R + + + +FV G+ + D F+ +G ++ A+++ +++G S+GFGFV Y + +
Sbjct: 233 REEQDKTGKIFVGGIGADVRPKEFEDFFAQYGTIIDAQLMLDKDTGRSRGFGFVTYDSPD 292
Query: 91 AAGKAIE 97
A + +
Sbjct: 293 AVDRVCQ 299
>gi|149024638|gb|EDL81135.1| rCG31562, isoform CRA_d [Rattus norvegicus]
Length = 271
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 3 LRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFG 62
L V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FG
Sbjct: 71 LVYVVNYPKDNKRKMDEADASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFG 128
Query: 63 EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
EV+ ++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 129 EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 175
>gi|375144786|ref|YP_005007227.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361058832|gb|AEV97823.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 102
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+VS L + D+ L FS +G+V AK++ RE+G S+GFGFV+ ++ E A KAI+
Sbjct: 2 NLYVSNLGFQVNDDDLAKLFSQYGQVSSAKVIMDRETGRSRGFGFVEMSSDEEARKAIKE 61
Query: 99 MDGK 102
++GK
Sbjct: 62 LEGK 65
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|301108515|ref|XP_002903339.1| CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans
T30-4]
gi|262097711|gb|EEY55763.1| CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans
T30-4]
Length = 255
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
Q P NLFV + T++ L + F+ FG V+ A+I+ +E+G S+GFGFV Y +A
Sbjct: 139 QGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSA 198
Query: 93 GKAIEGMDG 101
AI+GM+G
Sbjct: 199 EAAIKGMNG 207
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N+F+ L K +TL DTFSAFG ++ K+ E G SKGFGFV+Y EAA AI
Sbjct: 125 SANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATD-EMGQSKGFGFVQYDKGEAAQSAI 183
Query: 97 EGMDG 101
+ ++G
Sbjct: 184 KSLNG 188
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL++ L D+ L + FS +G++ KI++ +G SKG GFV ++T E A +A+
Sbjct: 321 NLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRD-ANGVSKGSGFVAFSTREEASQALTE 379
Query: 99 MDGKV 103
M+GK+
Sbjct: 380 MNGKM 384
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV LS+ TT E L F A+G + A I+ + G S+ FGF+ + + + A +A+E
Sbjct: 217 NNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMD-GKSRCFGFINFKSPDDAARAVE 275
Query: 98 GMDGK 102
++GK
Sbjct: 276 ELNGK 280
>gi|148682885|gb|EDL14832.1| mCG16669, isoform CRA_c [Mus musculus]
Length = 289
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 3 LRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFG 62
L V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FG
Sbjct: 73 LVYVVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFG 130
Query: 63 EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
EV+ ++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 131 EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 177
>gi|440293231|gb|ELP86374.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 538
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
+ + E TNLFV + K + + ++D F FGE++ K+ + E+G S GFG+VKY T+E
Sbjct: 94 KQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVN-ENGASNGFGYVKYRTIE 152
Query: 91 AAGKAIE 97
AA KA+E
Sbjct: 153 AALKAVE 159
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 35/72 (48%)
Query: 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
P + + +FVSGL+K T+ L SA E A + R Y +V T EA
Sbjct: 7 PDFDENKTVFVSGLTKNVTESLLYKEISAKFESQVASVHVSRNEHYDTAIAYVNMNTHEA 66
Query: 92 AGKAIEGMDGKV 103
A KAIE M+G +
Sbjct: 67 AKKAIETMNGAL 78
>gi|302679630|ref|XP_003029497.1| hypothetical protein SCHCODRAFT_85789 [Schizophyllum commune H4-8]
gi|300103187|gb|EFI94594.1| hypothetical protein SCHCODRAFT_85789 [Schizophyllum commune H4-8]
Length = 174
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 8/80 (10%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST ++V LS TTD+TLR FS FG+V+ + +++ RE+G S+GFGFV +++ A AI
Sbjct: 2 STKVYVGNLSWNTTDDTLRQAFSNFGQVLDSIVMRDRETGRSRGFGFVTFSSSGEAESAI 61
Query: 97 -----EGMDG---KVSLCMA 108
+ +DG KV+L A
Sbjct: 62 SSLNEQELDGRRIKVNLANA 81
>gi|116283521|gb|AAH29728.1| Tardbp protein [Mus musculus]
Length = 288
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 3 LRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFG 62
L V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FG
Sbjct: 71 LVYVVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFG 128
Query: 63 EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
EV+ ++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 129 EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 175
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|358337762|dbj|GAA56093.1| splicing factor 3B subunit 4 [Clonorchis sinensis]
Length = 363
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+F+ L ++ L DTFSAFG ++ KI++ E+G SKG+ F+ +A+ EA+ AIE
Sbjct: 101 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGYAFINFASFEASDAAIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQY-LC 168
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V GL ++TT+ L + F G VV+ + K R + +G+GFV++ T E A A+ M
Sbjct: 15 IYVGGLDEKTTESILWELFLQAGPVVNVHMPKDRITMQHQGYGFVEFMTEEDADYAMRIM 74
Query: 100 D 100
+
Sbjct: 75 N 75
>gi|15221187|ref|NP_177563.1| glycine-rich RNA-binding protein 5 [Arabidopsis thaliana]
gi|12324900|gb|AAG52402.1|AC020579_4 putative RNA-binding protein; 37609-36098 [Arabidopsis thaliana]
gi|25083154|gb|AAN72048.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|30023780|gb|AAP13423.1| At1g74230 [Arabidopsis thaliana]
gi|332197447|gb|AEE35568.1| glycine-rich RNA-binding protein 5 [Arabidopsis thaliana]
Length = 289
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 15 RLFS--TSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
RLFS +S ++S + Q + S+ +FV G+S T + LR+ FS +GEVV AKI+
Sbjct: 9 RLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVD 68
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
RE+G S+GF FV + + E A A++ +DG+
Sbjct: 69 RETGRSRGFAFVTFTSTEEASNAMQ-LDGQ 97
>gi|392410002|ref|YP_006446609.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
gi|390623138|gb|AFM24345.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
Length = 118
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 16 LFSTSPFSSSLNPPQRPQAE-PS--TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
LFS+ P + P+ E PS +V +S +T DE LRD F +G+V AK++
Sbjct: 10 LFSSMNGRVCCIPVEYPRKESPSDRNQFYVGNISFKTEDEQLRDLFETYGQVDAAKVIID 69
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
R +G S+GFGFV+ +A +AIE +D K
Sbjct: 70 RATGRSRGFGFVEMPDRDAGLRAIEDLDSK 99
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|313240807|emb|CBY33099.1| unnamed protein product [Oikopleura dioica]
Length = 252
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 25 SLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFV 84
SL P Q+ T +FV GL TTD++LR F +G++ A ++ R++G S+G+GFV
Sbjct: 2 SLGPQQKDTT--MTKIFVGGLPYHTTDDSLRQFFDVYGDIEEAVVITDRQTGKSRGYGFV 59
Query: 85 KYATLEAAGKAIEG----MDGKVSLCMASFLHALARII 118
A E A KAI+ +DG+ + +++ A R++
Sbjct: 60 TMAKKEDAQKAIQEPNPIIDGRKANVNLAYIGAKPRLM 97
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|340382462|ref|XP_003389738.1| PREDICTED: hypothetical protein LOC100632716 [Amphimedon
queenslandica]
Length = 433
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L D FSAFG ++ A KI++ +SG SKGF FV +A+ +A+ AIE
Sbjct: 101 NLFIGNLDPEIDEKMLYDIFSAFGVILQAPKIMRDVDSGGSKGFAFVNFASFDASDAAIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQY-LC 168
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|302809382|ref|XP_002986384.1| hypothetical protein SELMODRAFT_49298 [Selaginella moellendorffii]
gi|300145920|gb|EFJ12593.1| hypothetical protein SELMODRAFT_49298 [Selaginella moellendorffii]
Length = 145
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
FV GLS TTD L D FS +G V+ AK+V R++ S+GFGFV + + AI+GM
Sbjct: 4 CFVGGLSWATTDRNLEDAFSPYGTVIEAKVVLDRDTERSRGFGFVTFGDENSMQDAIDGM 63
Query: 100 DGK 102
GK
Sbjct: 64 HGK 66
>gi|156086826|ref|XP_001610820.1| ribonucleoprotein [Babesia bovis T2Bo]
gi|154798073|gb|EDO07252.1| ribonucleoprotein, putative [Babesia bovis]
Length = 306
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
+F GL++ TT ETLR+ FS +G VVH++IV + +G S+GFGFV ++ +AA KA+ +
Sbjct: 34 IFAGGLNRSTTAETLRNYFSKYGTVVHSEIVADKTTGRSRGFGFVTFSN-DAALKAVLAV 92
Query: 100 DGKVSLCMASFLHALAR 116
K+ +A A+ +
Sbjct: 93 SHKIDNVLADVKQAIKK 109
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
P E +FV G++ +++ +D F +G V++ + + + +GFGFV Y
Sbjct: 117 PTREEVNRIFVGGIADNISEDEFKDYFGKYGSVLNYNFIVDKSTNKPRGFGFVVYEDPAD 176
Query: 92 AGKAI 96
KAI
Sbjct: 177 VDKAI 181
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
P R T F P R Q +PS N+F+ L K ++ L DTFSA
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
FG ++ K+V E+G SKG+GFV + T EAA +AIE M+G
Sbjct: 122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNG 160
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|194385376|dbj|BAG65065.1| unnamed protein product [Homo sapiens]
Length = 142
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS T +++L FS +G++ +VK RE+ S+GFGFV + ++ A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 100 DGKVSL 105
+GKV +
Sbjct: 68 NGKVRI 73
>gi|56682929|ref|NP_001008545.1| TAR DNA-binding protein 43 isoform 2 [Mus musculus]
gi|354496956|ref|XP_003510589.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Cricetulus
griseus]
gi|33086856|gb|AAP92691.1| TARDBP S9 [Mus musculus]
Length = 304
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FGEV+
Sbjct: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFGEVL 131
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 132 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 175
>gi|154332728|ref|XP_001562626.1| RNA-binding protein 5-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059629|emb|CAM41749.1| RNA-binding protein 5-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 244
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N++V+ L D+ L+D FS +G +V A+I++ ++S SKG+GFV + + A KAI
Sbjct: 18 SRNVYVASLPLSFDDQHLQDLFSPYGRIVSARIMRAKKSHASKGYGFVMFREVSCAEKAI 77
Query: 97 EGMDGKV 103
EG+ G+V
Sbjct: 78 EGLHGRV 84
>gi|440800622|gb|ELR21658.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 229
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
P Q+ + LFV + K + T+R FS +GE+VH I++ R + SKG GFV Y+
Sbjct: 2 PDQQGECAKPWKLFVGQVPKNVQEATIRSFFSPYGEIVHMNILRDRFTQISKGCGFVSYS 61
Query: 88 TLEAAGKAIEGMDGKVSL 105
T EAA KAI + V++
Sbjct: 62 TKEAADKAISALHSVVTI 79
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ L T+E LR F+ +G + I+K GFVKY E A KAI +
Sbjct: 103 LFIGKLPTTVTEELLRQIFAPYGNIEKLNILK---GPADVNCGFVKYDNREEAEKAIRAL 159
Query: 100 DGKV 103
+GKV
Sbjct: 160 NGKV 163
>gi|344257835|gb|EGW13939.1| TAR DNA-binding protein 43 [Cricetulus griseus]
Length = 199
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 3 LRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFG 62
L V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FG
Sbjct: 71 LVYVVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFG 128
Query: 63 EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLCMASFLHALARIIN 119
EV+ ++ K ++G+SKGFGFV++ E K + +DG+ C +++
Sbjct: 129 EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKL----PNSKVFC 184
Query: 120 PFPIFL 125
FP+ L
Sbjct: 185 SFPVCL 190
>gi|297831910|ref|XP_002883837.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329677|gb|EFH60096.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 365
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L DTFSAFG V H KI++ ++G +GFGF+ Y + EA+ AIE
Sbjct: 113 NLFIGNLDPDVDEKMLYDTFSAFGMVADHPKIMRDPDTGNPRGFGFISYDSFEASDAAIE 172
Query: 98 GMDGK 102
M G+
Sbjct: 173 AMSGQ 177
>gi|257222468|gb|ACV52544.1| TDP-43 variant 3 [Mus musculus]
Length = 295
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FGEV+
Sbjct: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFGEVL 131
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 132 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 175
>gi|255539831|ref|XP_002510980.1| zinc finger protein, putative [Ricinus communis]
gi|223550095|gb|EEF51582.1| zinc finger protein, putative [Ricinus communis]
Length = 798
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL++ L D+ L FSAFG++V AK++K R +G SKG+GFVKY ++ A AI
Sbjct: 497 TNLYIGYLPPNLDDDGLIGLFSAFGDIVMAKVIKDRVTGVSKGYGFVKYRDIQMANNAIA 556
Query: 98 GMDG 101
M+G
Sbjct: 557 SMNG 560
>gi|452851903|ref|YP_007493587.1| RNP-1 like RNA-binding protein [Desulfovibrio piezophilus]
gi|451895557|emb|CCH48436.1| RNP-1 like RNA-binding protein [Desulfovibrio piezophilus]
Length = 87
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S NL+V LS TT++ +R F+ FGEV+ K+++ RE+G +GFGFV+ AG A+
Sbjct: 2 SKNLYVGNLSWSTTEDEVRAAFAEFGEVLSVKLIEDRETGRPRGFGFVEMDD-NGAGDAV 60
Query: 97 EGMDGK 102
+ +DGK
Sbjct: 61 DALDGK 66
>gi|308493359|ref|XP_003108869.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
gi|308247426|gb|EFO91378.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
Length = 404
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 25 SLNPPQRPQAEPST---NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
++ P Q+P +T ++FV LS ++ LR+ F FG+V AK+++ + SKG+
Sbjct: 117 AVEPGQQPSKVDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 176
Query: 82 GFVKYATLEAAGKAIEGMDGK 102
GFV Y E A +AIE M+G+
Sbjct: 177 GFVSYPKREEAERAIEQMNGQ 197
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T+++V ++ + DE +R F+++G + +I K +G+ FVK+ +AA KAI
Sbjct: 238 NTSVYVGNIANLSEDE-IRQAFASYGRISEVRIFK------MQGYAFVKFDNKDAAAKAI 290
Query: 97 EGMDGK 102
M+ +
Sbjct: 291 VQMNNQ 296
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|170098488|ref|XP_001880463.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644901|gb|EDR09150.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 154
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 45/64 (70%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S ++V LS TTD+TLR FS FG+V+ + +++ R++G S+GFGFV +++ + A AI
Sbjct: 2 SAKVYVGNLSWNTTDDTLRQAFSEFGQVLDSIVMRDRDTGRSRGFGFVTFSSGQEADAAI 61
Query: 97 EGMD 100
G++
Sbjct: 62 GGLN 65
>gi|301108523|ref|XP_002903343.1| CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans
T30-4]
gi|262097715|gb|EEY55767.1| CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans
T30-4]
Length = 260
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
Q P NLFV + T++ L + F+ FG V+ A+I+ +E+G S+GFGFV Y +A
Sbjct: 144 QGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSA 203
Query: 93 GKAIEGMDG 101
AI+GM+G
Sbjct: 204 EAAIKGMNG 212
>gi|171680237|ref|XP_001905064.1| hypothetical protein [Podospora anserina S mat+]
gi|170939745|emb|CAP64971.1| unnamed protein product [Podospora anserina S mat+]
Length = 176
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LF+ GL+ T + TLR F FG V A +VK R++G S+GFGFV+Y + A KAI
Sbjct: 2 SKLFIGGLAWHTEEATLRQKFEEFGVVEEAVVVKDRDTGRSRGFGFVRYTNPDDAQKAIS 61
Query: 98 GM 99
M
Sbjct: 62 AM 63
>gi|124487277|ref|NP_001074894.1| RNA-binding protein 24 [Mus musculus]
gi|354467200|ref|XP_003496058.1| PREDICTED: RNA-binding protein 24-like [Cricetulus griseus]
gi|380877121|sp|D3Z4I3.1|RBM24_MOUSE RecName: Full=RNA-binding protein 24; AltName: Full=RNA-binding
motif protein 24
Length = 236
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|56682931|ref|NP_001003899.1| TAR DNA-binding protein 43 isoform 3 [Mus musculus]
gi|354496954|ref|XP_003510588.1| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Cricetulus
griseus]
gi|20071690|gb|AAH27105.1| TAR DNA binding protein [Mus musculus]
gi|33086850|gb|AAP92688.1| TARDBP S6 [Mus musculus]
gi|148682883|gb|EDL14830.1| mCG16669, isoform CRA_a [Mus musculus]
Length = 295
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FGEV+
Sbjct: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFGEVL 131
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 132 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 175
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + E+G SKG+GFV + T EAA K+IE
Sbjct: 100 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 296 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 353
Query: 98 GMDGKV 103
M+G++
Sbjct: 354 EMNGRI 359
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + +DE LR+ F +G + K++ ++E G S+GFGFV + +AA +A
Sbjct: 192 TNVYVKNFGEDFSDEMLREMFEKYGRITSHKVM-YKEDGSSRGFGFVAFEDPDAAERACM 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 ELNGK 255
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|256421371|ref|YP_003122024.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
gi|256036279|gb|ACU59823.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
Length = 108
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++V+ L R D L FS FGEV AKI+K E+G S+GFGFV+ E KA++
Sbjct: 2 NIYVANLHYRLNDADLHQIFSEFGEVTSAKIIKDHETGRSRGFGFVEMPNQEEGSKAMDS 61
Query: 99 MDG 101
++G
Sbjct: 62 LNG 64
>gi|168033888|ref|XP_001769446.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679366|gb|EDQ65815.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 108
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%)
Query: 19 TSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYS 78
+SP S R Q + LFV LS R +E L FS +G V+ A+I R+SG S
Sbjct: 5 SSPRSDRSGSRDRRQRDGPNKLFVGNLSWRCDEEALETLFSDYGRVLEARIATERDSGRS 64
Query: 79 KGFGFVKYATLEAAGKAIEGMDG 101
+GFGFV ++ AIE +DG
Sbjct: 65 RGFGFVTLSSETEVNAAIESLDG 87
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 166 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 224
Query: 98 GMDGK 102
M+GK
Sbjct: 225 EMNGK 229
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 75 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 132
Query: 99 MDG 101
M+G
Sbjct: 133 MNG 135
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 269 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 326
Query: 98 GMDGKV 103
M+G++
Sbjct: 327 EMNGRI 332
>gi|255930353|ref|XP_002556736.1| Pc06g01290 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581349|emb|CAP79122.1| Pc06g01290 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 140
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GLS T D +LR F FG V A +VK R++G S+GFGFV+++T + A A+ M
Sbjct: 4 LFIGGLSWNTDDNSLRQRFEEFGVVEDATVVKDRDTGRSRGFGFVRFSTDDEATAAMNAM 63
Query: 100 DGK 102
+ +
Sbjct: 64 NNQ 66
>gi|71745456|ref|XP_827358.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma brucei]
gi|70831523|gb|EAN77028.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261331563|emb|CBH14557.1| PABP2 [Trypanosoma brucei gambiense DAL972]
Length = 555
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
Q + TNL+V L DE L++ FS FGEV AK V+ + GFG+V YAT EAA
Sbjct: 179 QLKQYTNLYVKNLDPSVDDEKLKEVFSPFGEVTSAK-VRDLAGRPTVGFGYVAYATHEAA 237
Query: 93 GKAIEGMDGKVS 104
KA+E +D K S
Sbjct: 238 AKAVEELDDKES 249
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V T E L+ F FGE V ++ + + S+ FGFV + +A +AI+
Sbjct: 289 NLYVKNFDDTVTSERLKALFDPFGETVSVSVMMDKATKVSRCFGFVSFKEQSSAAQAIQE 348
Query: 99 MDGKVSL 105
+ G +L
Sbjct: 349 LHGSTAL 355
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDA 244
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 245 NKAVEEMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
P R T F P R Q +PS N+F+ L K ++ L DTFSA
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 121
Query: 61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
FG ++ K+V E+G SKG+ FV + T EAA KAIE M+G
Sbjct: 122 FGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 15 RLFSTSPFSSSLNPPQRPQ--AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
RLF PF + Q A TN+++ DE L++ FS +G++V K++
Sbjct: 166 RLF-VGPFKNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTD 224
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC 106
SG SKGFGFV + T EAA +A+E M+GK +C
Sbjct: 225 -SSGKSKGFGFVSFDTHEAAQRAVEYMNGK-DIC 256
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L++ L + +E LR FS+FG + K+++ E G SKGFG + ++ E A KA+ M
Sbjct: 295 LYIKNLDETIDEEQLRRAFSSFGSMSRVKVME--EEGRSKGFGLICFSCPEEATKAMAEM 352
Query: 100 DGKV 103
+G+V
Sbjct: 353 NGQV 356
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L + ++ L + FSAFG+++ +K++ + S+G+ FV + + AA +AIE
Sbjct: 99 NVFIKNLDRSIDNKMLYEHFSAFGKILSSKVMSDDKG--SRGYAFVHFQSQSAADRAIEE 156
Query: 99 MDG 101
M+G
Sbjct: 157 MNG 159
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K + L DTFSAFG ++ K+ SG SKG+GFV+Y + EAA KAIE
Sbjct: 116 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSEEAAQKAIEK 174
Query: 99 MDG 101
++G
Sbjct: 175 LNG 177
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+FV LS+ T +E LR F FG + ++K E G S+ FGFV + E A +A+E
Sbjct: 206 TNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKD-EDGKSRCFGFVNFENAEDAARAVE 264
Query: 98 GMDG 101
++G
Sbjct: 265 ALNG 268
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL++ L +DE L++ FS +G + K+++ SG SKG GFV ++ E A +A+
Sbjct: 310 NLYIKNLDDSISDEKLKELFSPYGTITSCKVMRD-PSGVSKGSGFVAFSNPEEASRALSE 368
Query: 99 MDGKV 103
M+GK+
Sbjct: 369 MNGKM 373
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T+L+V L TD L D F+ G+VV ++ + S S G+G+V Y + A +A+E
Sbjct: 27 TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALE 86
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE L++ FS FG+ + K+++ SG SKGFGFV Y E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDA 244
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 245 NKAVEEMNGK 254
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|26350443|dbj|BAC38861.1| unnamed protein product [Mus musculus]
Length = 301
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FGEV+
Sbjct: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFGEVL 131
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 132 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 175
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|357120144|ref|XP_003561789.1| PREDICTED: uncharacterized protein LOC100835076 [Brachypodium
distachyon]
Length = 356
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 41/68 (60%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
P NLFV+GLS R TD L FS GEV+ A IV + S+GFGFV ATL+ A +
Sbjct: 48 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMATLKEADRC 107
Query: 96 IEGMDGKV 103
I+ +D V
Sbjct: 108 IKYLDRSV 115
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 204 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 262
Query: 98 GMDGK 102
M+GK
Sbjct: 263 EMNGK 267
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 113 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 170
Query: 99 MDG 101
M+G
Sbjct: 171 MNG 173
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 307 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 364
Query: 98 GMDGKV 103
M+G++
Sbjct: 365 EMNGRI 370
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|356503807|ref|XP_003520694.1| PREDICTED: LOW QUALITY PROTEIN: glycine-rich RNA-binding protein 2,
mitochondrial-like [Glycine max]
Length = 148
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAK--IVKHRESGYSKGFGFVKYATLEAAGK 94
S+ LF+ GLS D++L+D S FG VV K ++ +RESG +GFGFV ++ E+A
Sbjct: 34 SSKLFIGGLSYGVDDQSLKDASSGFGYVVDGKTKVITNRESGRXRGFGFVNFSNDESASS 93
Query: 95 AIEGMDGK 102
+ MDGK
Sbjct: 94 TLSTMDGK 101
>gi|354496958|ref|XP_003510590.1| PREDICTED: TAR DNA-binding protein 43-like isoform 3 [Cricetulus
griseus]
Length = 302
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FGEV+
Sbjct: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFGEVL 131
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 132 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 175
>gi|348041335|ref|NP_001231687.1| TAR DNA-binding protein 43 isoform 2 [Xenopus (Silurana)
tropicalis]
Length = 353
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+++L V GL +TT++ L+D FS FGEV+ ++ K ++G+SKGFGFV++A E K +
Sbjct: 104 TSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVM 163
Query: 97 EG---MDGKVSLC 106
+DG+ C
Sbjct: 164 SQRHMIDGRWCDC 176
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDA 244
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 245 NKAVEEMNGK 254
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|348523079|ref|XP_003449051.1| PREDICTED: nucleolin-like isoform 1 [Oreochromis niloticus]
Length = 700
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
R + P+ LFV GLS+ TT+ETL+D F V A+IV R++G SKGFGFV ++
Sbjct: 539 NRGNSGPTKTLFVKGLSEDTTEETLKDAFEG---AVAARIVTDRDTGSSKGFGFVDFSNE 595
Query: 90 EAAGKAIEGM-DGKVSLCMASFLHA 113
+ A E M DG++ + +A
Sbjct: 596 DDCKAAKEAMEDGEIDGSKVTLDYA 620
>gi|56682933|ref|NP_001008546.1| TAR DNA-binding protein 43 isoform 4 [Mus musculus]
gi|33086854|gb|AAP92690.1| TARDBP S8 [Mus musculus]
Length = 302
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FGEV+
Sbjct: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFGEVL 131
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 132 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 175
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|402593573|gb|EJW87500.1| hypothetical protein WUBG_01586, partial [Wuchereria bancrofti]
Length = 166
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
LF+ GLS TTDE LR +S +G VV +++ ++ YS+GFGFV +AT++ A A+
Sbjct: 100 LFIGGLSHETTDEQLRQYYSQWGTVVDCIVIRDPQTKYSRGFGFVTFATIQMAEAAM 156
>gi|396471623|ref|XP_003838913.1| hypothetical protein LEMA_P025860.1 [Leptosphaeria maculans JN3]
gi|312215482|emb|CBX95434.1| hypothetical protein LEMA_P025860.1 [Leptosphaeria maculans JN3]
Length = 164
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LF+ GL+ T D+ LR F FG+V A +VK R++G S+GFGFV+YA A A++
Sbjct: 2 SKLFIGGLAWHTDDQALRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRYANDAEADAAMQ 61
Query: 98 GMDGK 102
++ +
Sbjct: 62 ALNNE 66
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V ++ TD+ RD F+AFG+V + + + +E G S+GFGFV + T EAA KA+E
Sbjct: 215 TNVYVKNIANEVTDDEFRDLFAAFGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAAKAVE 273
Query: 98 GMDGK 102
++ K
Sbjct: 274 DLNNK 278
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E+G SKG+GFV Y T EAA +AI+
Sbjct: 123 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKH 181
Query: 99 MDG 101
++G
Sbjct: 182 VNG 184
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|348523081|ref|XP_003449052.1| PREDICTED: nucleolin-like isoform 2 [Oreochromis niloticus]
Length = 706
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
R + P+ LFV GLS+ TT+ETL+D F V A+IV R++G SKGFGFV ++
Sbjct: 545 NRGNSGPTKTLFVKGLSEDTTEETLKDAFEG---AVAARIVTDRDTGSSKGFGFVDFSNE 601
Query: 90 EAAGKAIEGM-DGKVSLCMASFLHA 113
+ A E M DG++ + +A
Sbjct: 602 DDCKAAKEAMEDGEIDGSKVTLDYA 626
>gi|195570612|ref|XP_002103301.1| GD19030 [Drosophila simulans]
gi|194199228|gb|EDX12804.1| GD19030 [Drosophila simulans]
Length = 244
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 12 GLRRLFSTS-PFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70
G+R +F T P PP RP+ TNL ++ L + T+ L FS +GE+ AK++
Sbjct: 17 GIRGMFQTGGPVDP---PPSRPEVRNKTNLILNYLPQDMTESELHRLFSKYGEIRKAKVI 73
Query: 71 KHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
+HR++G S +GFV + + A A+ ++G
Sbjct: 74 RHRDTGISCCYGFVDFVSERQAAAAVYNLNG 104
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
RP +TNL+V+ L ++ +R+ F+ +G+++ +++HR + +G F+ +
Sbjct: 118 RPTEYENTNLYVANLPTYMDEKKIRELFAPYGKLLDVTLLRHRFNNKFRGVAFLDFELAR 177
Query: 91 AAGKAIEGMD 100
A +A GMD
Sbjct: 178 DAEEAKYGMD 187
>gi|359688008|ref|ZP_09258009.1| RNP-1 like RNA-binding protein [Leptospira licerasiae serovar
Varillal str. MMD0835]
Length = 100
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 40/66 (60%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV GLS TTD TLR F G + A IV RE+G S+GFGFV + +A A+
Sbjct: 2 SSKLFVGGLSWSTTDLTLRQVFETHGAIQEANIVVDRETGRSRGFGFVTFVDQSSANAAV 61
Query: 97 EGMDGK 102
++GK
Sbjct: 62 SELNGK 67
>gi|356531689|ref|XP_003534409.1| PREDICTED: uncharacterized protein LOC100818518 [Glycine max]
Length = 780
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL++ L D+ L F FGE+V AK++K R SG SKG+GFVKYA + A AI
Sbjct: 465 TNLYIGYLPPNLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADITMANNAIL 524
Query: 98 GMDG 101
M+G
Sbjct: 525 AMNG 528
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 190 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 247
Query: 99 MDG 101
M+G
Sbjct: 248 MNG 250
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 281 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 339
Query: 98 GMDGK 102
M+GK
Sbjct: 340 EMNGK 344
>gi|303315989|ref|XP_003067999.1| Glycine-rich RNA-binding protein 2, mitochondrial precursor ,
putative [Coccidioides posadasii C735 delta SOWgp]
gi|240107675|gb|EER25854.1| Glycine-rich RNA-binding protein 2, mitochondrial precursor ,
putative [Coccidioides posadasii C735 delta SOWgp]
Length = 117
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LF+ GL+ TTDETLR FS FG + A +VK R++ S+GFGFV++A+ A A+
Sbjct: 2 SKLFIGGLAWHTTDETLRQGFSKFGSIEEAIVVKDRDTNRSRGFGFVRFASEGEAEAAMN 61
Query: 98 GMDGK 102
M+ +
Sbjct: 62 EMNNQ 66
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K + L DTFSAFG ++ K+ SG SKG+GFV+Y + EAA KAIE
Sbjct: 116 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSDEAAQKAIEK 174
Query: 99 MDG 101
++G
Sbjct: 175 LNG 177
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+FV LS+ T +E LR F FG + ++K E G S+ FGFV + E A +A+E
Sbjct: 206 TNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKD-EDGKSRCFGFVNFENAEDAARAVE 264
Query: 98 GMDG 101
++G
Sbjct: 265 ALNG 268
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL++ L +D+ L++ FS +G + K+++ SG SKG GFV ++T E A +A+
Sbjct: 310 NLYLKNLDDSISDDKLKELFSPYGTITSCKVMRD-PSGVSKGSGFVAFSTPEEASRALSE 368
Query: 99 MDGKV 103
M+GK+
Sbjct: 369 MNGKM 373
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T+L+V L TD L D F+ G+VV ++ + S S G+G+V Y + A +A+E
Sbjct: 27 TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALE 86
>gi|340992759|gb|EGS23314.1| hypothetical protein CTHT_0009820 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 191
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LF+ GL+ T D TL+ F FG V A +VK R++G S+GFGFV+Y A KA++
Sbjct: 2 SKLFIGGLAWHTEDATLKKKFEEFGVVEEAVVVKDRDTGRSRGFGFVRYTNEADAQKAMD 61
Query: 98 GMD 100
M+
Sbjct: 62 AMN 64
>gi|328767802|gb|EGF77850.1| hypothetical protein BATDEDRAFT_33617 [Batrachochytrium
dendrobatidis JAM81]
Length = 308
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
LF+S L ++ L DTFSAFG + KI ++ E+G SKG+GFV ++T EA+ AIE
Sbjct: 100 LFISNLDMTVDEKALYDTFSAFGMIASTPKISRNPETGESKGYGFVSFSTFEASDAAIEA 159
Query: 99 MDGK 102
M+G+
Sbjct: 160 MNGQ 163
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V + R TD + + F G VV+ + K R + +G+GFV++ T + A A + M
Sbjct: 13 VYVGNIEDRATDSLIWELFLQAGPVVNVYLPKDRVTQMHQGYGFVEFMTEQDAEYASKVM 72
Query: 100 D 100
+
Sbjct: 73 N 73
>gi|326474784|gb|EGD98793.1| glycine-rich RNA-binding protein [Trichophyton tonsurans CBS
112818]
Length = 149
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GL+ TTD+TLR+ FS FG + A +VK R++ S+GFGFV++++ A A+ M
Sbjct: 6 LFIGGLAWHTTDDTLREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAALNAM 65
Query: 100 -----DGKV 103
DG+V
Sbjct: 66 NNQEFDGRV 74
>gi|281494221|gb|ADA71972.1| TDP-43 variant 2 [Mus musculus]
Length = 304
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FGEV+
Sbjct: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFGEVL 131
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 132 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMVDGRWCDC 175
>gi|348676035|gb|EGZ15853.1| hypothetical protein PHYSODRAFT_346711 [Phytophthora sojae]
Length = 264
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
Q P NLFV + T++ L + F+ FG V+ A+I+ +E+G S+GFGFV Y +A
Sbjct: 146 QGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSA 205
Query: 93 GKAIEGMDG 101
AI+GM+G
Sbjct: 206 EAAIKGMNG 214
>gi|348523085|ref|XP_003449054.1| PREDICTED: nucleolin-like isoform 4 [Oreochromis niloticus]
Length = 659
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
R + P+ LFV GLS+ TT+ETL+D F V A+IV R++G SKGFGFV ++ +
Sbjct: 499 RGNSGPTKTLFVKGLSEDTTEETLKDAFEG---AVAARIVTDRDTGSSKGFGFVDFSNED 555
Query: 91 AAGKAIEGM-DGKVSLCMASFLHA 113
A E M DG++ + +A
Sbjct: 556 DCKAAKEAMEDGEIDGSKVTLDYA 579
>gi|348523083|ref|XP_003449053.1| PREDICTED: nucleolin-like isoform 3 [Oreochromis niloticus]
Length = 658
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
R + P+ LFV GLS+ TT+ETL+D F V A+IV R++G SKGFGFV ++
Sbjct: 497 NRGNSGPTKTLFVKGLSEDTTEETLKDAFEG---AVAARIVTDRDTGSSKGFGFVDFSNE 553
Query: 90 EAAGKAIEGM-DGKVSLCMASFLHA 113
+ A E M DG++ + +A
Sbjct: 554 DDCKAAKEAMEDGEIDGSKVTLDYA 578
>gi|148682886|gb|EDL14833.1| mCG16669, isoform CRA_d [Mus musculus]
Length = 300
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FGEV+
Sbjct: 76 VVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFGEVL 133
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 134 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 177
>gi|240254664|ref|NP_182201.4| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|63003880|gb|AAY25469.1| At2g46780 [Arabidopsis thaliana]
gi|330255657|gb|AEC10751.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 336
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL+ T +T+R F FGE+V A ++ + +G SKG+GFV + EAA +A +
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 98 GM----DGKVSLCMASFLHA 113
M DG+ + C + L A
Sbjct: 82 NMNPVIDGRRANCNLACLGA 101
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
P R T F P R Q +PS N+F+ L K ++ L DTFSA
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
FG ++ K+V E+G SKG+GFV + T EAA +AIE M+G
Sbjct: 122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNG 160
>gi|260221864|emb|CBA30852.1| Putative RNA-binding protein rbpB [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 124
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ ++V L TD++L+ FS FGEV AK++ R++G SKGF FV+ +T A AI
Sbjct: 28 SSKIYVGNLPYSVTDDSLQSNFSEFGEVTSAKVMMDRDTGRSKGFAFVEMSTPAFAQAAI 87
Query: 97 EGMDGKVSLCMASFLHALAR 116
+G++G+ S+ S + LAR
Sbjct: 88 DGLNGQ-SVDGRSIVVNLAR 106
>gi|34535789|dbj|BAC87434.1| unnamed protein product [Homo sapiens]
Length = 135
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A LFV GLS T +++L FS +G++ +VK RE+ S+GFGFV + ++ A
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 94 KAIEGMDGKVSLCMAS 109
A+ M+GKV + + S
Sbjct: 62 DAMMAMNGKVRIRVLS 77
>gi|56682935|ref|NP_001003898.1| TAR DNA-binding protein 43 isoform 5 [Mus musculus]
gi|26337419|dbj|BAC32395.1| unnamed protein product [Mus musculus]
gi|33086852|gb|AAP92689.1| TARDBP S7 [Mus musculus]
gi|148682888|gb|EDL14835.1| mCG16669, isoform CRA_f [Mus musculus]
gi|257222466|gb|ACV52543.1| TDP-43 variant 5 [Mus musculus]
Length = 298
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FGEV+
Sbjct: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFGEVL 131
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 132 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 175
>gi|449525351|ref|XP_004169681.1| PREDICTED: uncharacterized LOC101205455 [Cucumis sativus]
Length = 778
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 23 SSSLNPPQ--------RPQAE-PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHR 73
+S+ N PQ +P E TNL++ L D+ L FS FG++V AK++K R
Sbjct: 457 TSASNTPQASVGANGVKPAKEYDDTNLYIGYLPPTFDDDGLIRLFSTFGDIVMAKVIKDR 516
Query: 74 ESGYSKGFGFVKYATLEAAGKAIEGMDG 101
SG SKG+GFVKY+ ++ A AI M+G
Sbjct: 517 VSGLSKGYGFVKYSDIQMANNAIASMNG 544
>gi|449458337|ref|XP_004146904.1| PREDICTED: uncharacterized protein LOC101205455 [Cucumis sativus]
Length = 777
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 23 SSSLNPPQ--------RPQAE-PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHR 73
+S+ N PQ +P E TNL++ L D+ L FS FG++V AK++K R
Sbjct: 457 TSASNTPQASVGANGVKPAKEYDDTNLYIGYLPPTFDDDGLIRLFSTFGDIVMAKVIKDR 516
Query: 74 ESGYSKGFGFVKYATLEAAGKAIEGMDG 101
SG SKG+GFVKY+ ++ A AI M+G
Sbjct: 517 VSGLSKGYGFVKYSDIQMANNAIASMNG 544
>gi|414878514|tpg|DAA55645.1| TPA: hypothetical protein ZEAMMB73_431003, partial [Zea mays]
Length = 82
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
+F +GLS T + L+D FS G+V+ AK++ H SG SKGFGFVK+++ A A++ M
Sbjct: 20 IFSAGLSYDTNETALKDVFSQCGDVIAAKVICHPTSGKSKGFGFVKFSSQNQADAALQKM 79
Query: 100 DG 101
+G
Sbjct: 80 NG 81
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE L++ FS FG+ + K+++ SG SKGFGFV Y E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDA 244
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 245 NKAVEEMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|149024634|gb|EDL81131.1| rCG31562, isoform CRA_a [Rattus norvegicus]
gi|149024636|gb|EDL81133.1| rCG31562, isoform CRA_a [Rattus norvegicus]
Length = 295
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FGEV+
Sbjct: 74 VVNYPKDNKRKMDEADASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFGEVL 131
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 132 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 175
>gi|258564224|ref|XP_002582857.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908364|gb|EEP82765.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 146
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LF+ GL+ TTDETLR+ FS +G + A +VK R++ S+GFGFV++A+ A A+
Sbjct: 2 SKLFIGGLAWHTTDETLREGFSKYGTIEEAIVVKDRDTNRSRGFGFVRFASEAEADAAMN 61
Query: 98 GM 99
M
Sbjct: 62 AM 63
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 292 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 349
Query: 99 MDGKV 103
M+G++
Sbjct: 350 MNGRI 354
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F G + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 246
Query: 98 GMDGK 102
M+GK
Sbjct: 247 EMNGK 251
>gi|119177425|ref|XP_001240490.1| hypothetical protein CIMG_07653 [Coccidioides immitis RS]
gi|320032129|gb|EFW14085.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
gi|392867546|gb|EAS29215.2| hypothetical protein CIMG_07653 [Coccidioides immitis RS]
Length = 147
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GL+ TTDETLR FS FG + A +VK R++ S+GFGFV++A+ A A+ M
Sbjct: 4 LFIGGLAWHTTDETLRQGFSKFGSIEEAIVVKDRDTNRSRGFGFVRFASEGEAEAAMNEM 63
Query: 100 DGK 102
+ +
Sbjct: 64 NNQ 66
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|399218847|emb|CCF75734.1| unnamed protein product [Babesia microti strain RI]
Length = 237
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
E NLF+ L ++ L DTFSAFG V+ KIV+ E+G KGFGFV + + +++
Sbjct: 109 EIGANLFIGNLDPDVDEKLLYDTFSAFGLVLSTKIVREEETGLGKGFGFVSFDSFDSSDA 168
Query: 95 AIEGMDGKVSLC 106
A+ M+G+ LC
Sbjct: 169 ALASMNGQY-LC 179
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 292 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 349
Query: 99 MDGKV 103
M+G++
Sbjct: 350 MNGRI 354
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F G + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 246
Query: 98 GMDGK 102
M+GK
Sbjct: 247 EMNGK 251
>gi|356538787|ref|XP_003537882.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Glycine
max]
Length = 170
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 43/62 (69%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T ++ L FS +G++V +K++ RE+G S+GFGFV +A+ ++ AI GM+
Sbjct: 11 FVGGLAWVTGNDALEKAFSIYGDIVESKVINDRETGRSRGFGFVTFASEQSMKDAIAGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>gi|256083494|ref|XP_002577978.1| splicing factor 3b subunit 4 (fragment) [Schistosoma mansoni]
gi|350645079|emb|CCD60205.1| splicing factor 3b, subunit 4 (fragment),putative [Schistosoma
mansoni]
Length = 344
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+F+ L ++ L DTFSAFG ++ KI++ E+G SKG+ F+ +A+ EA+ AIE
Sbjct: 101 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGYAFINFASFEASDAAIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQY-LC 168
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V GL ++ + L + F G VV+ + K R + +G+GFV++ T E A A+ M
Sbjct: 15 IYVGGLDEKVNESILWELFLQAGPVVNVHMPKDRINMQHQGYGFVEFMTEEDADYAMRIM 74
Query: 100 D 100
+
Sbjct: 75 N 75
>gi|115456445|ref|NP_001051823.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|40714682|gb|AAR88588.1| putative RNA binding protein [Oryza sativa Japonica Group]
gi|108711961|gb|ABF99756.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711962|gb|ABF99757.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711963|gb|ABF99758.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711964|gb|ABF99759.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113550294|dbj|BAF13737.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|125546344|gb|EAY92483.1| hypothetical protein OsI_14220 [Oryza sativa Indica Group]
gi|125588547|gb|EAZ29211.1| hypothetical protein OsJ_13272 [Oryza sativa Japonica Group]
gi|215695067|dbj|BAG90258.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215715212|dbj|BAG94963.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764998|dbj|BAG86695.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 205
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
F+ LS TTDE+L+D F FG + AK+V + SG S+GFGFV + +A AIEGM
Sbjct: 9 CFIGNLSWSTTDESLKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKAMEDAIEGM 68
Query: 100 DG 101
+G
Sbjct: 69 NG 70
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 120 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 177
Query: 99 MDG 101
M+G
Sbjct: 178 MNG 180
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 315 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 372
Query: 99 MDGKV 103
M+G++
Sbjct: 373 MNGRI 377
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 211 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 269
Query: 98 GMDGK 102
M+GK
Sbjct: 270 EMNGK 274
>gi|326524682|dbj|BAK04277.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 657
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 40/64 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL++ L D L + FS FGE+V AK++K R +G SKG+GFVKY+ + A AI
Sbjct: 336 TNLYIGYLPPMFDDSGLINLFSQFGEIVMAKVIKDRNTGQSKGYGFVKYSDVSQANAAIA 395
Query: 98 GMDG 101
M G
Sbjct: 396 AMSG 399
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 292 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 349
Query: 99 MDGKV 103
M+G++
Sbjct: 350 MNGRI 354
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F G + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 246
Query: 98 GMDGK 102
M+GK
Sbjct: 247 EMNGK 251
>gi|425781282|gb|EKV19258.1| hypothetical protein PDIG_04180 [Penicillium digitatum PHI26]
gi|425783364|gb|EKV21218.1| hypothetical protein PDIP_08850 [Penicillium digitatum Pd1]
Length = 162
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LFV GLS T+D+TLR+ F FGE+ A +VK R + S+GFGFV++AT A A+
Sbjct: 2 SKLFVHGLSWHTSDDTLREGFQQFGEIQEAIVVKDRATLRSRGFGFVRFATDAEADSALG 61
Query: 98 GM-----DGKV 103
M DG+V
Sbjct: 62 AMNNQEFDGRV 72
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + + TDE R F +GE+ A + + E+G S+GFGFV ++ EAA A+E
Sbjct: 239 TNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 298
Query: 98 GMD 100
G++
Sbjct: 299 GLN 301
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E G SKG+GFV Y T EAA AI+
Sbjct: 147 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNAIKH 205
Query: 99 MDG 101
++G
Sbjct: 206 VNG 208
>gi|212722336|ref|NP_001132163.1| uncharacterized protein LOC100193584 [Zea mays]
gi|194693616|gb|ACF80892.1| unknown [Zea mays]
Length = 234
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 44/59 (74%)
Query: 44 GLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
GL+ T++E+L + F+++GE++ +K++ RE+G S+GFGFV +++ + AIE M+GK
Sbjct: 89 GLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGK 147
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|449540824|gb|EMD31812.1| hypothetical protein CERSUDRAFT_88684 [Ceriporiopsis subvermispora
B]
Length = 292
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+EPS+ LFV LS T++TL +TF+ +G++ ++ RE+G KGF +V+++ +EA+
Sbjct: 140 SEPSSVLFVGNLSWDATEDTLWETFNEYGDIKSVRVPTDRETGKPKGFAYVEFSDIEASK 199
Query: 94 KAIEGMDG 101
KA EG G
Sbjct: 200 KAFEGAAG 207
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 29 PQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
P ++ + +FV LS ++ L F+ GEVV A++ R +G S+GFG+V +AT
Sbjct: 35 PAEEASDATKTIFVGKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGKSRGFGYVTFAT 94
Query: 89 LEAAGKAI 96
+EA AI
Sbjct: 95 VEAVDAAI 102
>gi|357152395|ref|XP_003576105.1| PREDICTED: uncharacterized protein LOC100823193 [Brachypodium
distachyon]
Length = 267
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ +FV GLS T + LR+ F+ +G+++ AKI+ ES S+GFGF+ YA + A AI
Sbjct: 30 SSKIFVGGLSYNTDETGLREAFTHYGDIIDAKIIVDHESRRSRGFGFITYAAEDQAKAAI 89
Query: 97 EGMDGK 102
+DGK
Sbjct: 90 MALDGK 95
>gi|315057077|ref|XP_003177913.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
gi|311339759|gb|EFQ98961.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
Length = 152
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GL+ TTD+TLR+ FS FG + A +VK R++ S+GFGFV++++ A A+ M
Sbjct: 6 LFIGGLAWHTTDDTLREGFSQFGTIEEAIVVKDRDTNRSRGFGFVRFSSEAEADAALNAM 65
Query: 100 -----DGKV 103
DG+V
Sbjct: 66 NNQEFDGRV 74
>gi|440714448|ref|ZP_20895027.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
gi|436440644|gb|ELP33948.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
Length = 196
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V LS + T+E LR F +GEV I+ RE+G S+GF FV+ A E A AIE
Sbjct: 55 TNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIE 114
Query: 98 GMDG 101
++G
Sbjct: 115 NLNG 118
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|421614043|ref|ZP_16055112.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
gi|408495250|gb|EKJ99839.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
Length = 189
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V LS + T+E LR F +GEV I+ RE+G S+GF FV+ A E A AIE
Sbjct: 55 TNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIE 114
Query: 98 GMDG 101
++G
Sbjct: 115 NLNG 118
>gi|402086968|gb|EJT81866.1| hypothetical protein GGTG_01840 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 192
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LF+ GL+ T + TLR F FG V A +VK R++G S+GFGFV+Y + A +AI
Sbjct: 2 SKLFIGGLAWHTEEGTLRQKFEEFGAVEEAVVVKDRDTGRSRGFGFVRYTNEDDAQRAIS 61
Query: 98 GMD 100
M+
Sbjct: 62 AMN 64
>gi|417304381|ref|ZP_12091404.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|449136828|ref|ZP_21772190.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
gi|327539333|gb|EGF25954.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|448884533|gb|EMB15023.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
Length = 195
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V LS + T+E LR F +GEV I+ RE+G S+GF FV+ A E A AIE
Sbjct: 55 TNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIE 114
Query: 98 GMDG 101
++G
Sbjct: 115 NLNG 118
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|226528122|ref|NP_001150704.1| LOC100284337 [Zea mays]
gi|195641226|gb|ACG40081.1| RNA-binding region-containing protein 1 [Zea mays]
Length = 283
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL+ T+ + LR + FG+++ A ++ R SG SKG+GFV + E+A KA E
Sbjct: 32 TKVFVGGLAWETSSDRLRRFYERFGDILEAVVITDRHSGRSKGYGFVTFREAESASKACE 91
Query: 98 G----MDGKVSLCMASFLHALARIINPFP 122
+DG+ + C L +L R +P P
Sbjct: 92 DPTPVIDGRRANCN---LASLGRAQHPVP 117
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGINDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ + G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--DGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + D+ L+D FS +G + +++ E+G S+GFGFV + E A +A++
Sbjct: 191 TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ FS FG+ + K+++ SG SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|390598508|gb|EIN07906.1| hypothetical protein PUNSTDRAFT_88604 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 343
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEV-VHAKIVKHRESGYSKGFGFVKYATL 89
+ Q + NLF+ L + + L DTFSAFG + AKI + +G SKG+GFV Y
Sbjct: 92 KKQLDVGANLFIGNLDENVDERVLYDTFSAFGVISTTAKIARDPSTGQSKGYGFVSYTDF 151
Query: 90 EAAGKAIEGMDGK 102
E++ AIE M+G+
Sbjct: 152 ESSDAAIESMNGQ 164
>gi|238006540|gb|ACR34305.1| unknown [Zea mays]
gi|413938540|gb|AFW73091.1| RNA-binding region-containing protein 1 [Zea mays]
Length = 283
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL+ T+ + LR + FG+++ A ++ R SG SKG+GFV + E+A KA E
Sbjct: 32 TKVFVGGLAWETSSDRLRRFYERFGDILEAVVITDRHSGRSKGYGFVTFREAESASKACE 91
Query: 98 G----MDGKVSLCMASFLHALARIINPFP 122
+DG+ + C L +L R +P P
Sbjct: 92 DPTPVIDGRRANCN---LASLGRAQHPVP 117
>gi|224149436|ref|XP_002336806.1| predicted protein [Populus trichocarpa]
gi|222836937|gb|EEE75330.1| predicted protein [Populus trichocarpa]
Length = 112
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LF+ GL D TL++ FS +GEV+ A+++ RE+G S+GFGFV Y + E+A +A
Sbjct: 13 SSKLFIGGLPWSADDHTLKEAFSGYGEVIEARVIMDRETGRSRGFGFVSYDSSESASEAQ 72
Query: 97 EGMDGK 102
MDG+
Sbjct: 73 SAMDGQ 78
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ E G SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|86824038|gb|AAI05528.1| TAR DNA binding protein [Bos taurus]
Length = 298
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FGEV+
Sbjct: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFGEVL 131
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 132 MVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 175
>gi|356542092|ref|XP_003539505.1| PREDICTED: uncharacterized protein LOC100800982 isoform 1 [Glycine
max]
gi|356542094|ref|XP_003539506.1| PREDICTED: uncharacterized protein LOC100800982 isoform 2 [Glycine
max]
Length = 780
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL++ L D+ L F FGE+V AK++K R SG SKG+GFVKYA + A AI
Sbjct: 465 TNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADITMANNAIL 524
Query: 98 GMDG 101
M+G
Sbjct: 525 AMNG 528
>gi|300121123|emb|CBK21504.2| unnamed protein product [Blastocystis hominis]
Length = 302
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 29 PQRPQAEP-----STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
PQ QA P + + ++ L+ D++LR FS +G + ++K R+SG S+G G
Sbjct: 94 PQHEQAAPKEFIDTNKIIITSLAWSVNDDSLRQAFSKYGNLEECTVLKDRQSGKSRGRGI 153
Query: 84 VKYATLEAAGKAIEGMDG 101
V++AT EA KAIE M+G
Sbjct: 154 VRFATEEAMKKAIEEMNG 171
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ V GL D L D F GE+ ++++ +RE+ S+GFGFV +A+ A A+E
Sbjct: 6 VIVLGLPFSCDDSALYDYFQECGEITDSRVMVNRENKKSRGFGFVTFASEAAFNNALE 63
>gi|209489428|gb|ACI49190.1| hypothetical protein Csp3_JD02.018 [Caenorhabditis angaria]
Length = 485
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 29 PQRPQAE-PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
PQ+ A STNL++ GL+ TTD+TLRD S +G + K + + + + KG+GFV +
Sbjct: 172 PQQDNAPLSSTNLYIRGLTPSTTDDTLRDLCSKYGNIASTKAIMDKATNHCKGYGFVDFE 231
Query: 88 TLEAAGKAIEGMD 100
+ +AA A++G++
Sbjct: 232 SPQAAQAAVDGLN 244
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+ G
Sbjct: 250 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTG 307
Query: 99 MDGKV 103
M+G++
Sbjct: 308 MNGRI 312
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 112
Query: 99 MDG 101
M+G
Sbjct: 113 MNG 115
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 204
Query: 98 GMDGK 102
M+GK
Sbjct: 205 EMNGK 209
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 267 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 324
Query: 99 MDG 101
M+G
Sbjct: 325 MNG 327
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 461 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 518
Query: 98 GMDGKV 103
M+G++
Sbjct: 519 EMNGRI 524
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 358 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 416
Query: 98 GMDGK 102
M+GK
Sbjct: 417 EMNGK 421
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ K+ + E+G SKG+GFV + T EAA K+IE
Sbjct: 91 NVFIKNLDKAIDNKAMYDTFSAFGNILSCKVAQD-ENGASKGYGFVHFETEEAANKSIEK 149
Query: 99 MDG 101
++G
Sbjct: 150 VNG 152
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR F+ FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 288 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTE 345
Query: 99 MDGKV 103
M+G++
Sbjct: 346 MNGRI 350
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + +DE LRD F +G + K++ ++E G S+GFGFV + +AA +A
Sbjct: 183 TNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVM-YKEDGSSRGFGFVAFEDPDAAERACL 241
Query: 98 GMDGK 102
++GK
Sbjct: 242 ELNGK 246
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|315046452|ref|XP_003172601.1| hypothetical protein MGYG_05193 [Arthroderma gypseum CBS 118893]
gi|311342987|gb|EFR02190.1| hypothetical protein MGYG_05193 [Arthroderma gypseum CBS 118893]
Length = 481
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
S NLF LS +E LR F FGE+V +IV RESG S+GFG+V++A +E A KA
Sbjct: 237 SANLFAGNLSWNVDEEWLRSEFEEFGELVGTRIVTDRESGRSRGFGYVEFANVEDAVKA 295
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LF+ +S + +++ FS +G + ++ ESG KGFG+V++++++ A A+
Sbjct: 343 SDTLFIGNISFSADESMVQELFSKYGSIQGIRLPTDPESGRPKGFGYVQFSSVDEARAAM 402
Query: 97 EGMDG 101
E G
Sbjct: 403 EAEHG 407
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 115 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 172
Query: 99 MDG 101
M+G
Sbjct: 173 MNG 175
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 310 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 367
Query: 99 MDGKV 103
M+G++
Sbjct: 368 MNGRI 372
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 206 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 264
Query: 98 GMDGK 102
M+GK
Sbjct: 265 EMNGK 269
>gi|408393961|gb|EKJ73218.1| hypothetical protein FPSE_06642 [Fusarium pseudograminearum CS3096]
Length = 112
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 43/64 (67%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S L++ LS TTD+TLR+ FG ++ + +++ R++G S+GFGFV + ++E A A+
Sbjct: 2 SAKLYIGNLSWNTTDDTLRNACQEFGMIIDSIVMRDRDTGRSRGFGFVTFGSVEEAENAV 61
Query: 97 EGMD 100
G++
Sbjct: 62 NGLN 65
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+ A + R LR +++S P RP ++FV LS + LR+ FS F
Sbjct: 70 AMNARMCLGRELRVNWASSAIQQQT--PHRPDTSKHHHIFVGDLSPQIETSDLREAFSPF 127
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
GE+ ++VK + SKG+GFV + + A AI MDG
Sbjct: 128 GEISDCRVVKDATTQKSKGYGFVSFTNKQDAENAIHTMDG 167
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 33 QAEPST-NLFVSGLSKRTTDET-LRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
Q+ PS ++ GL++ + E LR F FGE+V ++ K KG+ F+K+ + E
Sbjct: 208 QSSPSNCTVYCGGLNQMASSEDFLRQAFDEFGEIVDIRLFK------DKGYAFIKFNSKE 261
Query: 91 AAGKAI 96
+A +AI
Sbjct: 262 SACRAI 267
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETHEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F +G + +++ +SG SKGFGFV + E A +A++
Sbjct: 191 TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K + L +TFSAFG ++ K+ SG SKG+GFV+Y T EAA +AI+
Sbjct: 128 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQRAIDK 186
Query: 99 MDGKV----SLCMASFLHALAR 116
++G + + + F+H L R
Sbjct: 187 LNGMLLNDKQVYVGPFVHKLQR 208
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+NL+V L + TD+ LR+ F+ FG + K+++ +G S+G GFV ++T E A +AI
Sbjct: 321 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRD-PTGVSRGSGFVAFSTPEEASRAIT 379
Query: 98 GMDGKV 103
M+GK+
Sbjct: 380 EMNGKM 385
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V LS+ +DE L F FG I++ E G SKGFGFV + + A +A++
Sbjct: 218 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVD 276
Query: 98 GMDGKV 103
++GK
Sbjct: 277 ALNGKT 282
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T+L+V L TD L + FS G+VV ++ + + S G+G+V YAT + A +A+
Sbjct: 38 TTSLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 97
Query: 97 EGMD 100
++
Sbjct: 98 NELN 101
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|212692825|ref|ZP_03300953.1| hypothetical protein BACDOR_02324 [Bacteroides dorei DSM 17855]
gi|237709514|ref|ZP_04539995.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265754720|ref|ZP_06089772.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|345514558|ref|ZP_08794069.1| hypothetical protein BSEG_02848 [Bacteroides dorei 5_1_36/D4]
gi|423230213|ref|ZP_17216617.1| hypothetical protein HMPREF1063_02437 [Bacteroides dorei
CL02T00C15]
gi|423241058|ref|ZP_17222172.1| hypothetical protein HMPREF1065_02795 [Bacteroides dorei
CL03T12C01]
gi|423243926|ref|ZP_17225001.1| hypothetical protein HMPREF1064_01207 [Bacteroides dorei
CL02T12C06]
gi|212664614|gb|EEB25186.1| hypothetical protein BACDOR_02324 [Bacteroides dorei DSM 17855]
gi|229436630|gb|EEO46707.1| hypothetical protein BSEG_02848 [Bacteroides dorei 5_1_36/D4]
gi|229456570|gb|EEO62291.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263234834|gb|EEZ20402.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|392631722|gb|EIY25691.1| hypothetical protein HMPREF1063_02437 [Bacteroides dorei
CL02T00C15]
gi|392643120|gb|EIY36878.1| hypothetical protein HMPREF1065_02795 [Bacteroides dorei
CL03T12C01]
gi|392643444|gb|EIY37194.1| hypothetical protein HMPREF1064_01207 [Bacteroides dorei
CL02T12C06]
Length = 122
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F++GL+ ++ L + F+ +GEVV KI+ RE+G SKG+GFV+ A EA KAI
Sbjct: 2 NIFIAGLNYNMSEAELGELFAEYGEVVSVKIIMDRETGRSKGYGFVEMADDEAGDKAIAA 61
Query: 99 -----MDGK 102
MDGK
Sbjct: 62 LNEVDMDGK 70
>gi|195122786|ref|XP_002005892.1| GI20724 [Drosophila mojavensis]
gi|193910960|gb|EDW09827.1| GI20724 [Drosophila mojavensis]
Length = 536
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 48/68 (70%), Gaps = 3/68 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T+L V GL+ +TT+++LR+ F ++GEV+ A+I K +SG SKGFGFV++ + EA + +
Sbjct: 107 TDLIVLGLAWKTTEDSLREYFESYGEVLMAQIKKDVKSGQSKGFGFVRFGSYEAQMRVLA 166
Query: 98 G---MDGK 102
+DG+
Sbjct: 167 NRHLIDGR 174
>gi|357472741|ref|XP_003606655.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355507710|gb|AES88852.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 112
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
ST LF++GLS T + LRDTF G+++ K++ + +G SKG+GFV++ + AA
Sbjct: 30 HSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAAT 89
Query: 95 AIEGMDGKV 103
A + + G++
Sbjct: 90 ARKELHGQI 98
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N+F+ L ++TL DTFSAFG+++ KI E+G SKGFGFV Y E+A AI
Sbjct: 134 SGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKIATD-ENGNSKGFGFVHYEESESAKAAI 192
Query: 97 EGMDG 101
E ++G
Sbjct: 193 ENVNG 197
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V ++ ++ LR+TFS FG + + + ESG S+GFGFV + E A KA+E
Sbjct: 228 TNVYVKNINLNWDEDKLRETFSPFG-TISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVE 286
Query: 98 GMDGK 102
++ K
Sbjct: 287 ELNNK 291
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NLFV L D L + F +G + AK++ ++G SKGFGFV Y++ E A KAI
Sbjct: 332 NLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLD-DAGKSKGFGFVCYSSPEEATKAITE 390
Query: 99 M 99
M
Sbjct: 391 M 391
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 93
Query: 99 MDG 101
M+G
Sbjct: 94 MNG 96
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 231 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 288
Query: 99 MDGKV 103
M+G++
Sbjct: 289 MNGRI 293
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 185
Query: 98 GMDGK 102
M+GK
Sbjct: 186 EMNGK 190
>gi|432908497|ref|XP_004077890.1| PREDICTED: RNA-binding protein 24-like isoform 2 [Oryzias latipes]
Length = 121
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A +A +A +
Sbjct: 12 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRASADRACK 71
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A R+I P
Sbjct: 72 DPNPIIDGRKANVNLAYLGAKPRVIQP 98
>gi|302762759|ref|XP_002964801.1| hypothetical protein SELMODRAFT_406315 [Selaginella moellendorffii]
gi|300167034|gb|EFJ33639.1| hypothetical protein SELMODRAFT_406315 [Selaginella moellendorffii]
Length = 127
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 30 QRPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA 87
RP+A + L+V+GL+ D +LR F FG+V+ K++ + ++G SKGFGFV +
Sbjct: 10 NRPKARYMRACKLYVNGLAWGVDDLSLRGAFEEFGDVIDTKVMTNPDTGRSKGFGFVTFK 69
Query: 88 TLEAAGKAIEGMDGK 102
+ A +A+E MDGK
Sbjct: 70 REDEAKEALESMDGK 84
>gi|258575439|ref|XP_002541901.1| predicted protein [Uncinocarpus reesii 1704]
gi|237902167|gb|EEP76568.1| predicted protein [Uncinocarpus reesii 1704]
Length = 503
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
++ S NLFV LS +E LR F +FGE+ +IV R+SG S+GFG+V++ E A
Sbjct: 260 ESNASANLFVGNLSWNVDEEWLRSEFESFGELSGVRIVTDRDSGRSRGFGYVEFTNAEDA 319
Query: 93 GKAIEGMDG 101
KA E G
Sbjct: 320 AKAFEAKKG 328
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 39/65 (60%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LF+ +S + +++TFS++G + ++ ESG KGFG++++++++ A A+
Sbjct: 369 SDTLFIGNISFGADENAIQETFSSYGTISGIRLPTDPESGRPKGFGYIQFSSVDEARSAL 428
Query: 97 EGMDG 101
+ G
Sbjct: 429 NELQG 433
>gi|452836287|gb|EME38231.1| hypothetical protein DOTSEDRAFT_140462 [Dothistroma septosporum
NZE10]
Length = 170
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 43 SGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
SGL+ T D+TLR F +G+V A +VK R++G S+GFGFV++A AA AI+ M+
Sbjct: 4 SGLAWHTDDQTLRTKFEEYGQVDEAIVVKDRDTGRSRGFGFVRFAEDSAADAAIQAMN 61
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 93
Query: 99 MDG 101
M+G
Sbjct: 94 MNG 96
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 231 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 288
Query: 99 MDGKV 103
M+G++
Sbjct: 289 MNGRI 293
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 127 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 185
Query: 98 GMDGK 102
M+GK
Sbjct: 186 EMNGK 190
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
R +A TN+++ DE L+D FS +G+ + K++ SG SKGFGFV + + E
Sbjct: 241 RSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHE 299
Query: 91 AAGKAIEGMDGK 102
AA KA+E M+G+
Sbjct: 300 AAKKAVEEMNGR 311
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++TL + FSAFG+++ +K++ + SKG+ FV + AA +AIE
Sbjct: 157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEE 214
Query: 99 MDGKV 103
M+GK+
Sbjct: 215 MNGKL 219
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
+R + L++ L DE LR+ FS+FG + K+++ E G SKGFG + +++
Sbjct: 343 ERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSP 400
Query: 90 EAAGKAIEGMDGKV 103
E A KA+ M+G++
Sbjct: 401 EDATKAMTEMNGRI 414
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ DE LR+ FS +G + +++ E+G S+GFGFV + E A KA++
Sbjct: 191 TNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|4455315|emb|CAB36850.1| RNA-binding protein like [Arabidopsis thaliana]
gi|7268090|emb|CAB78428.1| RNA-binding protein like [Arabidopsis thaliana]
Length = 126
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 43 SGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
S LS TTD+ LR+ FS +G VV A +++ R + S+GFGFV Y++ A A+ GMDGK
Sbjct: 47 SDLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGK 106
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 63 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 120
Query: 99 MDG 101
M+G
Sbjct: 121 MNG 123
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 258 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 315
Query: 99 MDGKV 103
M+G++
Sbjct: 316 MNGRI 320
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 154 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 212
Query: 98 GMDGK 102
M+GK
Sbjct: 213 EMNGK 217
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ DE LR+ FS +G + +++ E+G S+GFGFV + E A KA++
Sbjct: 191 TNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|321443204|gb|EFX60016.1| hypothetical protein DAPPUDRAFT_39159 [Daphnia pulex]
Length = 91
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTDETL+ F FG + A ++ R++G S+G+GFV T EAA AI
Sbjct: 5 TKIFVGGLPYHTTDETLKAFFLKFGNIEEAVVITDRQTGKSRGYGFVTMETPEAAQNAIR 64
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L RI P
Sbjct: 65 DPNPIIDGRKANVNLAYLGVKTRIARP 91
>gi|116747535|ref|YP_844222.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans MPOB]
gi|116696599|gb|ABK15787.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans MPOB]
Length = 122
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S L+V LS +T+ E LR+ FS G V A +V+ RESG S+GFGFV+ +T E KAI
Sbjct: 2 SMKLYVGNLSFQTSSEQLRELFSQVGTVESATVVEDRESGRSRGFGFVEMSTKEEGQKAI 61
Query: 97 EGMDGK 102
++GK
Sbjct: 62 AELNGK 67
>gi|449681524|ref|XP_002157695.2| PREDICTED: splicing factor 3B subunit 4-like [Hydra magnipapillata]
Length = 328
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+F+ L ++ L DTFSAFG ++ KI++ E+G SKGF F+ +A+ EA+ AI+
Sbjct: 58 NIFIGNLDPDIDEKLLYDTFSAFGVILTTPKIMRDPETGNSKGFAFINFASFEASDAAID 117
Query: 98 GMDGK 102
M+G+
Sbjct: 118 AMNGQ 122
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
P R T F + P R Q +PS N+F+ L K ++ + DTFSA
Sbjct: 64 PADAERALDTMNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSA 123
Query: 61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
FG ++ K+ + ESG SKG+GFV + T EAA K+I+ ++G
Sbjct: 124 FGNILSCKVAQD-ESGSSKGYGFVHFETEEAATKSIDKVNG 163
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TD+ L++ F +G + +V +++ S+GFGFV + EAA +A+E
Sbjct: 194 TNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQK-SRGFGFVAFEDPEAAERAVE 252
Query: 98 GMDGK 102
++GK
Sbjct: 253 DLNGK 257
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
+R NL+V L DE LR FS FG + AK++ E SKGFGF
Sbjct: 290 ERMNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITSAKVM--LEERRSKGFGF 341
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
E ++NL+V L D+ L++ FS+ G++ AK+++H +SG SKGFGFV ++T E A K
Sbjct: 306 EKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRH-DSGLSKGFGFVCFSTSEEAQK 364
Query: 95 AIEGMDG 101
A+ ++G
Sbjct: 365 ALTTLNG 371
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V L + T++ +RD FS FG+V I+K +G S+GFGFV + + + A KA+E
Sbjct: 207 TNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDG-NGKSRGFGFVNFESPDEAKKAVE 265
Query: 98 GMDG 101
++G
Sbjct: 266 ALNG 269
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NLFV L +L+D F FG ++ K+ + E+G SK FGFV++ + ++A A+
Sbjct: 118 NLFVKNLDPSINSASLQDIFCKFGNILSCKVAE--ENGKSKCFGFVQFDSDDSATAALNA 175
Query: 99 -----MDGKVSLCMASFLHALAR 116
+DGK L ++ F+ R
Sbjct: 176 LNDTMLDGK-KLFVSKFVKKCER 197
>gi|413938542|gb|AFW73093.1| hypothetical protein ZEAMMB73_850373 [Zea mays]
Length = 163
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL+ T+ + LR + FG+++ A ++ R SG SKG+GFV + E+A KA E
Sbjct: 32 TKVFVGGLAWETSSDRLRRFYERFGDILEAVVITDRHSGRSKGYGFVTFREAESASKACE 91
Query: 98 G----MDGKVSLCMASFLHALARIINPFP 122
+DG+ + C L +L R +P P
Sbjct: 92 DPTPVIDGRRANCN---LASLGRAQHPVP 117
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--LEGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ +E LRD F+ +G + +++ +SG S+GFGFV + E A KA++
Sbjct: 191 TNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTD-DSGKSRGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|116206982|ref|XP_001229300.1| hypothetical protein CHGG_02784 [Chaetomium globosum CBS 148.51]
gi|88183381|gb|EAQ90849.1| hypothetical protein CHGG_02784 [Chaetomium globosum CBS 148.51]
Length = 179
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LF+ GL+ T + TLR F FG V A +VK R++G S+GFGFV+Y A KAIE
Sbjct: 2 SKLFIGGLAWHTEEPTLRQKFEEFGVVEEAVVVKDRDTGRSRGFGFVRYTNEGDAIKAIE 61
Query: 98 GMD 100
M+
Sbjct: 62 AMN 64
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 86
Query: 99 MDG 101
M+G
Sbjct: 87 MNG 89
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 224 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 281
Query: 99 MDGKV 103
M+G++
Sbjct: 282 MNGRI 286
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 178
Query: 98 GMDGK 102
M+GK
Sbjct: 179 EMNGK 183
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 35 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 92
Query: 99 MDG 101
M+G
Sbjct: 93 MNG 95
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 230 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 287
Query: 99 MDGKVSLCMASFLHALAR 116
M+G++ + F ALA+
Sbjct: 288 MNGRI-VATKPFYVALAQ 304
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 126 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 184
Query: 98 GMDGK 102
M+GK
Sbjct: 185 EMNGK 189
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 104 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 161
Query: 99 MDG 101
M+G
Sbjct: 162 MNG 164
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 299 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 356
Query: 99 MDGKV 103
M+G++
Sbjct: 357 MNGRI 361
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 195 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 253
Query: 98 GMDGK 102
M+GK
Sbjct: 254 EMNGK 258
>gi|195382465|ref|XP_002049950.1| GJ21868 [Drosophila virilis]
gi|194144747|gb|EDW61143.1| GJ21868 [Drosophila virilis]
Length = 539
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T+L V GL+ +TT+++LR+ F +GEV+ A+I K +SG SKGFGFV++ + EA + +
Sbjct: 107 TDLIVLGLAWKTTEDSLREYFEGYGEVLMAQIKKDVKSGQSKGFGFVRFGSYEAQMRVLS 166
Query: 98 G---MDGK 102
+DG+
Sbjct: 167 NRHLIDGR 174
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 86
Query: 99 MDG 101
M+G
Sbjct: 87 MNG 89
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 224 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 281
Query: 99 MDGKV 103
M+G++
Sbjct: 282 MNGRI 286
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 178
Query: 98 GMDGK 102
M+GK
Sbjct: 179 EMNGK 183
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 41 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 98
Query: 99 MDG 101
M+G
Sbjct: 99 MNG 101
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 236 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 293
Query: 99 MDGKV 103
M+G++
Sbjct: 294 MNGRI 298
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 132 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 190
Query: 98 GMDGK 102
M+GK
Sbjct: 191 EMNGK 195
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETHEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ FS +G + +++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>gi|341900388|gb|EGT56323.1| CBN-TIAR-1 protein [Caenorhabditis brenneri]
Length = 399
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 25 SLNPPQRPQAEPST---NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
++ P Q+P +T ++FV LS ++ LR+ F FG+V AK+++ + SKG+
Sbjct: 115 AVEPGQQPSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 174
Query: 82 GFVKYATLEAAGKAIEGMDGK 102
GFV Y E A +AIE M+G+
Sbjct: 175 GFVSYPKREEAERAIEQMNGQ 195
Score = 35.4 bits (80), Expect = 8.4, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T+++V ++ ++E +R F+++G + +I K +G+ FVK+ +AA KAI
Sbjct: 236 NTSVYVGNIAN-LSEEDIRQAFASYGRISEVRIFK------MQGYAFVKFDNKDAAAKAI 288
Query: 97 EGMDGK 102
M+ +
Sbjct: 289 VQMNNQ 294
>gi|386346963|ref|YP_006045212.1| RNP-1 like RNA-binding protein [Spirochaeta thermophila DSM 6578]
gi|339411930|gb|AEJ61495.1| RNP-1 like RNA-binding protein [Spirochaeta thermophila DSM 6578]
Length = 100
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S ++V L+ +TT++TLR F +GEV KI+ R+SG+SKGFGFV+ A+ EA AI
Sbjct: 2 SFKIYVGNLNYQTTEDTLRQLFEQYGEVESVKIITDRDSGFSKGFGFVEMASEEAGEAAI 61
Query: 97 EGMD 100
++
Sbjct: 62 SALN 65
>gi|291233573|ref|XP_002736726.1| PREDICTED: RNA-binding protein 38-like [Saccoglossus kowalevskii]
Length = 219
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T LFV GL TTD++LR+ F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 14 TKLFVGGLPYSTTDKSLREYFDNFGEIEEAVVITDRQTGKSRGYGFVTMADRPAAERACK 73
Query: 98 G----MDGKVSLCMASFLHALARII 118
+DG+ + +F+ A R +
Sbjct: 74 DPNPIIDGRKANVNLAFIGAKPRGV 98
>gi|449297589|gb|EMC93607.1| hypothetical protein BAUCODRAFT_76311, partial [Baudoinia
compniacensis UAMH 10762]
Length = 253
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LFV GLS +E L F FGE+ +I+ RE+G SKGFGFV++ +++ A KA+E
Sbjct: 1 STLFVGGLSWNVDEEWLMREFEEFGELASTRIMTDRETGKSKGFGFVEFKSVDGAIKAVE 60
Query: 98 GMDG 101
G G
Sbjct: 61 GKQG 64
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
EPS+ LFV +S ++ + + FS +G + ++ R++G KGFG+V+ +++ A
Sbjct: 105 EPSSTLFVGNVSFDANEDMVTEVFSEYGSIKAVRLPTDRDTGALKGFGYVEMFSIDDAKV 164
Query: 95 AIEGMDG 101
A E + G
Sbjct: 165 AFEALQG 171
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 15/89 (16%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N+F+ L K ++TL +TFS+FG ++ K+ E+G SKGFGFV+Y EAA AI
Sbjct: 121 SANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAVD-EAGQSKGFGFVQYDKEEAAQNAI 179
Query: 97 EGMDGKVSLCMASFLHALARIINPFPIFL 125
+ ++G +IN P+F+
Sbjct: 180 KSLNG--------------MLINDKPVFV 194
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL++ L D+ L + FS FG++ K+++ ++G SKG GFV ++T E A +A+
Sbjct: 317 NLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRD-QNGLSKGSGFVAFSTREEASQALTE 375
Query: 99 MDGKV 103
M+GK+
Sbjct: 376 MNGKM 380
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV LS+ TT E L F +G++ A +V G S+ FGF+ + +AA A++
Sbjct: 213 NNVFVKNLSESTTKEDLLKIFGEYGDITSA-VVMIGMDGKSRCFGFINFENPDAASHAVQ 271
Query: 98 GMDGK 102
++GK
Sbjct: 272 ELNGK 276
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
Q P+T+L+V L +D L + FS G+VV ++ + S S G+ +V Y+ A
Sbjct: 29 QPLPTTSLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDA 88
Query: 93 GKAIE 97
+A+E
Sbjct: 89 ARALE 93
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 86
Query: 99 MDG 101
M+G
Sbjct: 87 MNG 89
Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 224 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 281
Query: 99 MDGKVSLCMASFLHALAR 116
M+G++ + F ALA+
Sbjct: 282 MNGRI-VATKPFYVALAQ 298
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 178
Query: 98 GMDGK 102
M+GK
Sbjct: 179 EMNGK 183
>gi|440800287|gb|ELR21326.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 500
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 44/58 (75%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+FVS +++ TD+ L+D FS+ G+V A +VK++ +G +KGFGFVK+ATL+A A++
Sbjct: 55 IFVSDIARGVTDQELKDAFSSAGQVTDALVVKNKFTGETKGFGFVKFATLDAVHAALD 112
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 136 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 193
Query: 99 MDG 101
M+G
Sbjct: 194 MNG 196
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 331 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 388
Query: 99 MDGKV 103
M+G++
Sbjct: 389 MNGRI 393
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 227 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 285
Query: 98 GMDGK 102
M+GK
Sbjct: 286 EMNGK 290
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 291 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 348
Query: 98 GMDGKV 103
M+G++
Sbjct: 349 EMNGRI 354
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F G + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 246
Query: 98 GMDGK 102
M+GK
Sbjct: 247 EMNGK 251
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETHEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F +G + +++ ++G SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTD-DTGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 DMNGK 254
>gi|312095606|ref|XP_003148410.1| hypothetical protein LOAG_12851 [Loa loa]
Length = 233
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
LF+ GLS TTDE LR +S +G VV +++ ++ YS+GFGFV +AT++ A A+
Sbjct: 64 LFIGGLSHETTDEQLRQYYSQWGTVVDCIVIRDPQTKYSRGFGFVTFATIQMAEAAM 120
>gi|301606181|ref|XP_002932728.1| PREDICTED: polyadenylate-binding protein 1-B-like [Xenopus
(Silurana) tropicalis]
Length = 447
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 20 SPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSK 79
+ FS P +P+ S NL+V LS D L+ F+ FG + AK++ RE G SK
Sbjct: 117 TEFSKKPEPLHKPRYN-SVNLYVKNLSYEIDDYRLKKEFAPFGTITSAKVM--REGGRSK 173
Query: 80 GFGFVKYATLEAAGKAIEGMDGKV 103
GFGFV ++T A KA+ M+GK+
Sbjct: 174 GFGFVCFSTPAEARKALSEMNGKI 197
>gi|294925596|ref|XP_002778960.1| spliceosome-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239887806|gb|EER10755.1| spliceosome-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 388
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 13 LRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
L +LFS + + + + E NLF+ L ++ L DTFSAFG +V +
Sbjct: 85 LTKLFSKPIRCNKSSSDRIVRDEVGANLFIGNLGPDVDEKQLYDTFSAFGSIVVFCKIMR 144
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
E+G SKGFGFV Y EA+ A+ GM+G+
Sbjct: 145 SETGESKGFGFVSYDGFEASDAAMAGMNGQ 174
>gi|3510252|gb|AAC33496.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 304
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL+ T +T+R F FGE+V A ++ + +G SKG+GFV + EAA +A +
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 98 GM----DGKVSLCMASFLHA 113
M DG+ + C + L A
Sbjct: 82 NMNPVIDGRRANCNLACLGA 101
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 120 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 177
Query: 99 MDG 101
M+G
Sbjct: 178 MNG 180
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 315 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 372
Query: 99 MDGKV 103
M+G++
Sbjct: 373 MNGRI 377
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 211 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 269
Query: 98 GMDGK 102
M+GK
Sbjct: 270 EMNGK 274
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
P R T F P R Q +PS N+F+ L K ++ L DTFSA
Sbjct: 36 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 95
Query: 61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
FG ++ K+V E+G SKG+GFV + T EAA +AIE M+G
Sbjct: 96 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNG 134
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A
Sbjct: 160 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 218
Query: 93 GKAIEGMDGK 102
KA++ M+GK
Sbjct: 219 QKAVDEMNGK 228
>gi|224097630|ref|XP_002311019.1| predicted protein [Populus trichocarpa]
gi|222850839|gb|EEE88386.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 24 SSLNPPQRPQAEP--STNLFVS-GLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKG 80
+S + + Q P + LF++ GLS T+++TLR F FGE+V KI+ + S SKG
Sbjct: 249 NSADSSEASQTTPVKTKKLFITAGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 308
Query: 81 FGFVKYATLEAAGKAIEGMDGKVSL 105
+ FV+Y T EAA A++ M+GKV +
Sbjct: 309 YAFVEYTTEEAASAALKEMNGKVGV 333
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
P R T F P R Q +PS N+F+ L D+ L DTFSA
Sbjct: 53 PADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSA 112
Query: 61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
FG ++ K+V E+G SKG+ FV + T EAA KAIE M+G
Sbjct: 113 FGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNG 151
>gi|148682889|gb|EDL14836.1| mCG16669, isoform CRA_g [Mus musculus]
Length = 288
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FGEV+
Sbjct: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFGEVL 131
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 132 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 175
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 86
Query: 99 MDG 101
M+G
Sbjct: 87 MNG 89
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 146 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 203
Query: 99 MDG 101
M+G
Sbjct: 204 MNG 206
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 341 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTE 398
Query: 99 MDGKV 103
M+G++
Sbjct: 399 MNGRI 403
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 237 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 295
Query: 98 GMDGK 102
M+GK
Sbjct: 296 EMNGK 300
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L + ++ + DTFSAFG ++ K+ + E+G SKG+GFV + T EAA K+IE
Sbjct: 100 NVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQD-ENGTSKGYGFVHFETEEAANKSIEK 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E SKGFGFV +++ E A KA+
Sbjct: 297 NLYVKNLDDTIDDERLRKEFSPFGTITSAKVM--MEDNRSKGFGFVCFSSPEEATKAVTE 354
Query: 99 MDGKV 103
M+G++
Sbjct: 355 MNGRI 359
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + T+E LR F +G++ KI+ ++ G SKGFGFV + + EAA A+E
Sbjct: 192 TNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIM-SKDDGKSKGFGFVAFESPEAAETAVE 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 ALNGK 255
>gi|1002380|gb|AAC47514.1| RRM-type RNA binding protein [Caenorhabditis elegans]
Length = 398
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV L ++ L DTFSAFG ++ KI++ +SG SKGF F+ +A+ EA+ A+E
Sbjct: 111 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 170
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 171 AMNGQF-LC 178
>gi|116197981|ref|XP_001224802.1| hypothetical protein CHGG_07146 [Chaetomium globosum CBS 148.51]
gi|88178425|gb|EAQ85893.1| hypothetical protein CHGG_07146 [Chaetomium globosum CBS 148.51]
Length = 374
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95
P +NLFV+G+ R + + F +GEV +I+K SG S+GFGFVK T E A A
Sbjct: 68 PGSNLFVTGIHPRLEESEITRLFEKYGEVEKCQIMKDPHSGESRGFGFVKMVTSEMADAA 127
Query: 96 IEGMDGKV 103
IEG+ G+V
Sbjct: 128 IEGLRGEV 135
>gi|32476441|ref|NP_869435.1| RNA-binding protein [Rhodopirellula baltica SH 1]
gi|32446986|emb|CAD78892.1| RNA-binding protein [Rhodopirellula baltica SH 1]
Length = 206
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V LS + T+E LR F +GEV I+ RE+G S+GF FV+ A E A AIE
Sbjct: 66 TNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIE 125
Query: 98 GMDG 101
++G
Sbjct: 126 NLNG 129
>gi|413921822|gb|AFW61754.1| hypothetical protein ZEAMMB73_478558 [Zea mays]
Length = 131
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 15 RLFSTSPFSSSLNPPQRPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
RL + + SS +RPQ + P+ +V L + D L FS GEVV AK+V
Sbjct: 22 RLLNVNRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYD 81
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
RE+G S+GFGFV + E AI +DG+
Sbjct: 82 RETGRSRGFGFVSMVSKEELNDAISALDGQ 111
>gi|406865924|gb|EKD18965.1| splicing factor 3b subunit 4 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 650
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
Q+P E LF+ L ++TL DTFS FG + + ESG SKG+GFV YAT
Sbjct: 94 QKP-IEVGAELFIGNLDPMVDEKTLYDTFSRFGSLQAPPKIARDESGLSKGYGFVSYATF 152
Query: 90 EAAGKAIEGMDGK 102
EA+ AI M+G+
Sbjct: 153 EASDDAIANMNGQ 165
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ +S TD+ RD F+ FG+V + + + +E G S+GFGFV + T EAA KA++
Sbjct: 245 TNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAAKAVD 303
Query: 98 GMDGK 102
++GK
Sbjct: 304 DLNGK 308
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E+G SKG+GFV Y T EAA +AI+
Sbjct: 153 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKH 211
Query: 99 MDG 101
++G
Sbjct: 212 VNG 214
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 18 STSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY 77
+ P SS P PQA S +L+V L T+ L + FS G V ++ + +
Sbjct: 48 TAGPTPSSAAP--HPQA--SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRR 103
Query: 78 SKGFGFVKYATLEAAGKAIEGMD 100
S G+ +V Y T KA+E ++
Sbjct: 104 SLGYAYVNYNTTSDGEKALEELN 126
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L + ++ + DTFSAFG ++ K+ + E+G SKG+GFV + T EAA K+IE
Sbjct: 100 NVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQD-ENGTSKGYGFVHFETEEAANKSIEK 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + ++E LR+ F FG++ K++ ++ G SKGFGFV + + EAA A++
Sbjct: 192 TNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMS-KDDGKSKGFGFVAFESPEAAETAVD 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 ALNGK 255
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRE------SGYSKGFGFVKYATLEAA 92
NL+V L DE LR F+ FG + AK++ + SKGFGFV +++ E A
Sbjct: 297 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEA 356
Query: 93 GKAIEGMDGKV 103
KA+ M+G++
Sbjct: 357 TKAVTEMNGRI 367
>gi|326430602|gb|EGD76172.1| splicing factor 3b [Salpingoeca sp. ATCC 50818]
Length = 256
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L ++ L DTFSAFG ++ H KI++ ++G SKG+ FV YA EA+ AI+
Sbjct: 100 NLYIGNLDPSVDEKLLYDTFSAFGVILQHPKIMRDPDTGASKGYAFVNYANFEASDAAIK 159
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 160 AMNGQY-LC 167
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 25 SLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFV 84
+L P +R Q ++V GL R T+ L + F G VV + K R +G +G+GFV
Sbjct: 2 NLQPTERNQ---DATVYVGGLDDRATESLLWELFQQAGPVVSVHMPKDRVTGLHQGYGFV 58
Query: 85 KYATLEAAGKAIEGMD 100
++ E A A++ M+
Sbjct: 59 EFLGEEDAEYALKIMN 74
>gi|226502460|ref|NP_001151678.1| LOC100285313 [Zea mays]
gi|195648731|gb|ACG43833.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|223972767|gb|ACN30571.1| unknown [Zea mays]
Length = 293
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
+FV GLS TT+ TL TF +G+V+ A++V RE+G S+GFGFV ++ A AI GM
Sbjct: 9 IFVGGLSWNTTERTLERTFGQYGKVIEAQVVVERETGRSRGFGFVTFSEPRAVDAAIRGM 68
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244
Query: 93 GKAIEGMDGK 102
KA++ M+GK
Sbjct: 245 QKAVDEMNGK 254
>gi|226502290|ref|NP_001150604.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195640520|gb|ACG39728.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|414591943|tpg|DAA42514.1| TPA: glycine-rich RNA-binding protein 7 [Zea mays]
Length = 316
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
+FV GLS +TT+ TL TF +G V+ A++V RE+G S+GFGFV ++ A AI GM
Sbjct: 9 IFVGGLSWKTTERTLERTFGQYGNVIEAQVVVKRETGRSRGFGFVTFSEPRAVDAAIRGM 68
>gi|168008942|ref|XP_001757165.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691663|gb|EDQ78024.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 161
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
FV GLS TTD+ L + F FG V+ AK++ +E+G+S+GFGFV + + +AIE +
Sbjct: 9 CFVGGLSWNTTDKGLEEEFRRFGNVLEAKVIVDKETGHSRGFGFVNFGDERSMDEAIERL 68
Query: 100 DGK 102
GK
Sbjct: 69 HGK 71
>gi|403418256|emb|CCM04956.1| predicted protein [Fibroporia radiculosa]
Length = 336
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVK----- 85
R + + +T LF+ GL+ T E++RD FS FG+VV A ++ RE+G SKGFGFV
Sbjct: 88 RQEHQRATKLFIGGLAGSVTSESMRDFFSQFGKVVDATVMLDRETGRSKGFGFVSFENVN 147
Query: 86 ------YATLEAAGKAIE 97
+ LE GK I+
Sbjct: 148 VEPLLGFGNLEIDGKLID 165
>gi|341903554|gb|EGT59489.1| CBN-TIAR-3 protein [Caenorhabditis brenneri]
Length = 417
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
++FV LSK +++ L+ TF +GEV AK+++ ++ SKG+GFV + + A AI G
Sbjct: 193 HVFVGDLSKDVSNDLLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAIAG 252
Query: 99 MDGK 102
M+GK
Sbjct: 253 MNGK 256
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T+++V +S++TTD LRD+FS +G++ ++ K ++ + FV+Y E A KAI
Sbjct: 293 NTSVYVGNISQQTTDADLRDSFSTYGDIAEVRVFK------TQRYAFVRYDKKECATKAI 346
Query: 97 EGMDGKVSL-----CMASFLHAL-ARIINPFPIFL 125
M+GK C A+ + +NP PI L
Sbjct: 347 MEMNGKEMAGNQVRCSWGRTQAVPNQALNPLPIDL 381
>gi|291224886|ref|XP_002732430.1| PREDICTED: splicing factor 3b, subunit 4-like [Saccoglossus
kowalevskii]
Length = 388
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+F+ L ++ L DTFSAFG ++ KI++ ESG SKG+ F+ +A+ +A+ AIE
Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPESGNSKGYAFINFASFDASDAAIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQY-LC 168
Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V GL ++ ++ L + F G VV+ + K R + +G+GFV++ E A AI+ M
Sbjct: 15 VYVGGLDEKVSEALLWELFLQSGPVVNTHMPKDRVTQQHQGYGFVEFLGEEDADYAIKIM 74
Query: 100 D 100
+
Sbjct: 75 N 75
>gi|224138468|ref|XP_002326610.1| predicted protein [Populus trichocarpa]
gi|222833932|gb|EEE72409.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL++ L D+ L FS+FGE+V AK++K R +G SKG+GFVKY ++ A AI
Sbjct: 426 TNLYIGYLPPNLDDDGLIGLFSSFGEIVMAKVIKDRITGLSKGYGFVKYRDVQMANNAIA 485
Query: 98 GMDG 101
M+G
Sbjct: 486 SMNG 489
>gi|91079430|ref|XP_968120.1| PREDICTED: similar to spliceosome associated protein [Tribolium
castaneum]
gi|270004395|gb|EFA00843.1| hypothetical protein TcasGA2_TC003731 [Tribolium castaneum]
Length = 393
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+F+ L ++ L DTFSAFG ++ KI++ ++G SKGF F+ +A+ EA+ +IE
Sbjct: 101 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGFAFINFASFEASDASIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQY-LC 168
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V GL + T+ L + F G +V+ + K R + +G+GFV++ E A AI+ M
Sbjct: 15 IYVGGLDDKVTESLLWELFVQSGPLVNVHMPKDRVTMMHQGYGFVEFMGEEDADYAIKIM 74
Query: 100 D 100
+
Sbjct: 75 N 75
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 8 AAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA 67
AAPRG R PP+ Q PS ++V L + D L FS G+VV A
Sbjct: 219 AAPRGAR----------VERPPR--QFGPSFRIYVGNLPWQVDDSRLVQLFSEHGKVVDA 266
Query: 68 KIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
++V RE+G S+GFGFV AT E AI +DG+
Sbjct: 267 RVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQ 301
Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 26 LNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVK 85
+ PP+ ++V L E L F G V ++++ +RE+ S+GFGFV
Sbjct: 137 VEPPE------EAKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVT 190
Query: 86 YATLEAAGKAIE-----GMDGKV 103
+T+E A KA+E +DG++
Sbjct: 191 MSTVEEAEKAVEMFHRYDVDGRL 213
>gi|339244657|ref|XP_003378254.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316972855|gb|EFV56501.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 432
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+F+ L ++ L DTFSAFG ++ KI++ E+G SKGF F+ +A+ EA+ AIE
Sbjct: 101 NVFIGNLDPEVDEKLLYDTFSAFGVLLQVPKIMRDPETGNSKGFAFINFASFEASDAAIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQY-LC 168
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V GL +R ++ L + F G +V + K R S +G+GFV++ E A AI+ M
Sbjct: 15 IYVGGLDERVSETILWELFVQAGPIVSVHMPKDRISSTHQGYGFVEFMGEEDADYAIKIM 74
Query: 100 D 100
+
Sbjct: 75 N 75
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETHEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ FS +G + +++ + G SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTD-DGGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 DMNGK 254
>gi|148225398|ref|NP_001080637.1| TAR DNA binding protein [Xenopus laevis]
gi|28278686|gb|AAH44271.1| Tardbp-prov protein [Xenopus laevis]
Length = 245
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+++L V GL +TT++ L+D FS FGEV+ ++ K ++G+SKGFGFV++ E K +
Sbjct: 104 TSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFTEYETQVKVM 163
Query: 97 EG---MDGKVSLC 106
+DG+ C
Sbjct: 164 SQRHMIDGRWCDC 176
>gi|58865526|ref|NP_001011979.1| TAR DNA binding protein [Rattus norvegicus]
gi|53734262|gb|AAH83752.1| Tardbp protein [Rattus norvegicus]
gi|149024637|gb|EDL81134.1| rCG31562, isoform CRA_c [Rattus norvegicus]
Length = 285
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 6 AVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV 65
V P+ +R + SS++ + Q +++L V GL +TT++ L+D FS FGEV+
Sbjct: 74 VVNYPKDNKRKMDEADASSAVKVKRAVQK--TSDLIVLGLPWKTTEQDLKDYFSTFGEVL 131
Query: 66 HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG---MDGKVSLC 106
++ K ++G+SKGFGFV++ E K + +DG+ C
Sbjct: 132 MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 175
>gi|397505333|ref|XP_003823221.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 24 [Pan
paniscus]
Length = 236
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV G TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGXPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|224060641|ref|XP_002193452.1| PREDICTED: nucleolin [Taeniopygia guttata]
Length = 692
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LFV GLS+ TT+ETLR++F + A+IV R++G SKGFGFV +++ E A A
Sbjct: 549 SKTLFVRGLSEDTTEETLRESFEG---SISARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 605
Query: 97 EGM-DGKVS 104
E M DG++
Sbjct: 606 EAMEDGEID 614
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
Q Q ST L V+ LS T+ETL++ F + V G KG+ FV +AT
Sbjct: 447 QENQKGESTTLIVNNLSYAATEETLQEVFKKASSIR----VPQNNQGRPKGYAFVDFATA 502
Query: 90 EAAGKAIEGMDG 101
E A +A+ ++
Sbjct: 503 EDAKEALNSLNN 514
>gi|45384000|ref|NP_990596.1| nucleolin [Gallus gallus]
gi|128840|sp|P15771.1|NUCL_CHICK RecName: Full=Nucleolin; AltName: Full=Protein C23
gi|63711|emb|CAA35060.1| unnamed protein product [Gallus gallus]
Length = 694
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LFV GLS+ TT+ETLR++F + A+IV R++G SKGFGFV +++ E A A
Sbjct: 552 SKTLFVRGLSEDTTEETLRESFEG---SISARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 608
Query: 97 EGM-DGKVS 104
E M DG++
Sbjct: 609 EAMEDGEID 617
>gi|308510552|ref|XP_003117459.1| CRE-SAP-49 protein [Caenorhabditis remanei]
gi|308242373|gb|EFO86325.1| CRE-SAP-49 protein [Caenorhabditis remanei]
Length = 389
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV L ++ L DTFSAFG ++ KI++ +SG SKGF F+ +A+ EA+ A+E
Sbjct: 101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQF-LC 168
>gi|297839301|ref|XP_002887532.1| hypothetical protein ARALYDRAFT_476560 [Arabidopsis lyrata subsp.
lyrata]
gi|297333373|gb|EFH63791.1| hypothetical protein ARALYDRAFT_476560 [Arabidopsis lyrata subsp.
lyrata]
Length = 292
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 15 RLFS--TSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
R+FS +S ++S + Q + S+ +FV G+S T + LR+ FS +GEVV AKI+
Sbjct: 9 RIFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVD 68
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
RE+G S+GF FV + + E A A++ +DG+
Sbjct: 69 RETGRSRGFAFVTFTSTEEASNAMQ-LDGQ 97
>gi|171451954|dbj|BAG15905.1| DAZAP [Dugesia japonica]
Length = 354
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GL + TT+E+L+ FS FG+VV A ++ +G S+GFG+V+Y+ EA
Sbjct: 13 LFVGGLHQSTTNESLKSYFSKFGDVVEASVMMDHRTGRSRGFGYVRYSDNEA-------- 64
Query: 100 DGKVSLCMASFLHALARIINPFP 122
V M++ H + I+P P
Sbjct: 65 ---VQKVMSTKHHLEGKEIDPKP 84
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKY 86
+FV G++ +ETLRD F FG + ++K + +GF FV +
Sbjct: 99 IFVGGIAPEHNEETLRDFFKQFGNITELTLMKDQSGHRHRGFAFVAF 145
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDA 244
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 245 NKAVEEMNGK 254
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDA 244
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 245 NKAVEEMNGK 254
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|374584597|ref|ZP_09657689.1| RNP-1 like RNA-binding protein [Leptonema illini DSM 21528]
gi|373873458|gb|EHQ05452.1| RNP-1 like RNA-binding protein [Leptonema illini DSM 21528]
Length = 109
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 41/65 (63%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST L+V GLS TTD TLR +F A G V A +V R +G S+GFGFV +A +A AI
Sbjct: 2 STKLYVGGLSWDTTDTTLRHSFEAHGSVHEAIVVMDRYTGKSRGFGFVTFADENSARTAI 61
Query: 97 EGMDG 101
M+G
Sbjct: 62 SAMNG 66
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|440796891|gb|ELR17992.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 147
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
S LFV GLS T D +LR F GEVV AK+++ R++G S+GFGFV +A+ + A
Sbjct: 2 SAKLFVGGLSWGTDDNSLRSAFEQHGEVVDAKVIQDRDTGKSRGFGFVTFASADEA 57
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG+++ K+V E+G SKG+GFV +AT EAA K+IE
Sbjct: 100 NVFIKNLDKSIDNKAMYDTFSAFGDILSCKVVCD-ENG-SKGYGFVHFATEEAANKSIEK 157
Query: 99 MDG 101
++G
Sbjct: 158 VNG 160
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR F FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 296 NLYVKNLDDSLDDERLRKEFMPFGTITSAKVMS--EGGRSKGFGFVCFSSPEEATKAVTE 353
Query: 99 MDGKV 103
M+G++
Sbjct: 354 MNGRI 358
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
Q + TN+FV DE LR+ F +G++V K+++ SG +KGFGFV + A
Sbjct: 186 QQKKFTNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDA 245
Query: 93 GKAIEGMDGK 102
A + ++ K
Sbjct: 246 ENACDDLNMK 255
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|115532084|ref|NP_001021932.1| Protein SAP-49 [Caenorhabditis elegans]
gi|55977846|sp|Q09442.2|SF3B4_CAEEL RecName: Full=Splicing factor 3B subunit 4; AltName:
Full=Spliceosome-associated protein 49
gi|50511896|emb|CAB60993.2| Protein SAP-49 [Caenorhabditis elegans]
Length = 388
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV L ++ L DTFSAFG ++ KI++ +SG SKGF F+ +A+ EA+ A+E
Sbjct: 101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQF-LC 168
>gi|194336480|ref|YP_002018274.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308957|gb|ACF43657.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 95
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+++ L+ +++ LRD FS FGEV +A I+ + SG SKGFGFV+ A +AIE
Sbjct: 2 NIYIGNLAYTVSEDDLRDAFSEFGEVANASIINDKFSGRSKGFGFVEMPKDSEAREAIES 61
Query: 99 MDGK 102
M+GK
Sbjct: 62 MNGK 65
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
E ++NL+V L D+ L++ FS+ G++ AK+++H +SG SKGFGFV ++T E A K
Sbjct: 306 EKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRH-DSGLSKGFGFVCFSTSEEAQK 364
Query: 95 AIEGMDG 101
A+ ++G
Sbjct: 365 ALTTLNG 371
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 14 RRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHR 73
++LF S F + + TN++V L + T++ +RD FS FG+V I+K
Sbjct: 184 KKLF-VSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDG 242
Query: 74 ESGYSKGFGFVKYATLEAAGKAIEGMDG 101
+G S+GFGFV + + + A KA+E ++G
Sbjct: 243 -NGKSRGFGFVNFESPDEAKKAVEALNG 269
Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
P+ NLFV L +L+D F FG ++ K+ + E+G SK FGFV++ + ++
Sbjct: 111 PRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAE--ENGKSKCFGFVQFDSDDS 168
Query: 92 AGKAIEG-----MDGKVSLCMASFLHALAR 116
A A+ +DGK L ++ F+ R
Sbjct: 169 ATAALNALNDTMLDGK-KLFVSKFVKKCER 197
>gi|406965367|gb|EKD91001.1| Glycine-rich RNA-binding protein [uncultured bacterium]
Length = 87
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LFV L D LR+ FS +GE++ A ++K R++G S+GFGFV++A KAI
Sbjct: 5 SKKLFVGSLPWGVDDSGLREAFSKYGEIIQATVLKDRQTGRSRGFGFVEFANDADGDKAI 64
Query: 97 EGMDG 101
+ M+G
Sbjct: 65 QEMNG 69
>gi|357137279|ref|XP_003570228.1| PREDICTED: uncharacterized protein LOC100833583 [Brachypodium
distachyon]
Length = 288
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T LFV GL+ TT E LR + FG+++ A ++ R SG SKG+GFV + E+A KA E
Sbjct: 37 TKLFVGGLAWETTSERLRRFYERFGDILEAVVITDRHSGRSKGYGFVTFRDPESATKACE 96
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ C L +L R P
Sbjct: 97 DPTPVIDGRRGNCN---LASLGRAQTP 120
>gi|427382637|ref|ZP_18879357.1| hypothetical protein HMPREF9447_00390 [Bacteroides oleiciplenus YIT
12058]
gi|425729882|gb|EKU92733.1| hypothetical protein HMPREF9447_00390 [Bacteroides oleiciplenus YIT
12058]
Length = 130
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++V+ LS T ++L++ F+ +GEV A I+ RE+G S+GFGFV+ E KAI+G
Sbjct: 2 NIYVANLSWNTNSDSLQELFTQYGEVTSAYIINDRETGRSRGFGFVEMPNDEDGQKAIDG 61
Query: 99 MD 100
++
Sbjct: 62 LN 63
>gi|218189840|gb|EEC72267.1| hypothetical protein OsI_05421 [Oryza sativa Indica Group]
Length = 116
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GLS T + L+D FS G ++ K++ H +G SKG+GFVK+A+ + A A+ M
Sbjct: 39 LFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKM 98
Query: 100 DGKV 103
G+V
Sbjct: 99 GGEV 102
>gi|20257709|gb|AAM16020.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T +L + FS +GEV+ +KI+ RE+ S+GFGFV ++ A AIEGM+
Sbjct: 20 FVGGLAWATDXHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXAMRSAIEGMN 79
Query: 101 GK 102
GK
Sbjct: 80 GK 81
>gi|407929404|gb|EKG22234.1| hypothetical protein MPH_00413 [Macrophomina phaseolina MS6]
Length = 159
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LF+ GL+ T D TLR F FG+V A +VK R++G S+GFGFV++ A AI+
Sbjct: 2 SKLFIGGLAWHTDDATLRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRFTQESDAEAAIQ 61
Query: 98 GMD 100
M+
Sbjct: 62 AMN 64
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A
Sbjct: 182 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PTGKSKGFGFVSYEKHEDA 240
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 241 NKAVEEMNGK 250
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 96 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 153
Query: 99 MDG 101
M+G
Sbjct: 154 MNG 156
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + A+++ E G SKGFGFV +++ E A KA+
Sbjct: 290 VNLYIKNLDDTIDDEKLRKEFSPFGSITRAEVM--LEDGRSKGFGFVCFSSPEEATKAVT 347
Query: 98 GMDGKV 103
M+G++
Sbjct: 348 EMNGRI 353
>gi|405963075|gb|EKC28679.1| ELAV-like protein 2 [Crassostrea gigas]
Length = 502
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
+R ++P+TNL V+ L + +DE ++ F G + KIV+ + + YS GFGFV Y
Sbjct: 183 RRNMSDPNTNLIVNYLPQTLSDEDFKELFEKIGPLKSYKIVRDKATNYSYGFGFVDYVNE 242
Query: 90 EAAGKAIEGMDGK 102
E A +AI M+G+
Sbjct: 243 EDAERAIHEMNGQ 255
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++++ + + +E L F FGE++ ++++ + + SKG GFV Y A A+E
Sbjct: 278 NIYIANIPRSFGEEELGAHFRQFGEIIQVRLLRDKSTNESKGVGFVYYTKRSEAAAALEA 337
Query: 99 MDGKVSL 105
M+GK L
Sbjct: 338 MNGKTLL 344
>gi|391337396|ref|XP_003743055.1| PREDICTED: uncharacterized protein LOC100908642 [Metaseiulus
occidentalis]
Length = 543
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+F+ L ++ L DTFSAFG ++ KI++ E+G SKGF FV +A+ EA+ AI+
Sbjct: 101 NIFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFVNFASFEASDAAID 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQY-LC 168
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 32 PQAEPSTN--LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
P AE + + ++V GL ++ +D L + F G +V + K R +G +G+GFV++
Sbjct: 5 PIAERNQDATIYVGGLDEKVSDNLLWELFVQAGPIVSVHMPKDRITGLHQGYGFVEFLGE 64
Query: 90 EAAGKAIEGMD 100
E A AI+ M+
Sbjct: 65 EDADYAIKVMN 75
>gi|375108277|ref|ZP_09754538.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374669008|gb|EHR73793.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 167
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L+V L+ DE+L+ FS FG V AK++ RE+G SKGFGFV+ T A AI GM
Sbjct: 5 LYVGNLAYSVRDESLQAAFSQFGTVTSAKVMMDRETGRSKGFGFVEMGTGAEAQAAINGM 64
Query: 100 DGK 102
+G+
Sbjct: 65 NGQ 67
>gi|332529248|ref|ZP_08405212.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
gi|332041471|gb|EGI77833.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
Length = 110
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ L+V LS D+ L+ F AFG+V AK++ R+SG SKGFGFV+ + + A AI
Sbjct: 2 SSKLYVGNLSYSVRDDDLQQQFGAFGDVQSAKVMMDRDSGRSKGFGFVEMGSADQAEAAI 61
Query: 97 EGMDGK 102
G+ G+
Sbjct: 62 RGLHGQ 67
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
P R T F P R Q +PS N+F+ L K ++ L DTFSA
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
FG ++ K+V E+G SKG+GFV + T EAA +AIE M+G
Sbjct: 122 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNG 160
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244
Query: 93 GKAIEGMDGK 102
KA++ M+GK
Sbjct: 245 QKAVDEMNGK 254
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PTGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 10 PRGLRRLFSTSPFSSSLNPPQR---PQAEPST------NLFVSGLSKRTTDETLRDTFSA 60
P R T F P R Q +PS N+F+ L K ++ L DTFSA
Sbjct: 67 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 126
Query: 61 FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101
FG ++ K+V E+G SKG+GFV + T EAA +AIE M+G
Sbjct: 127 FGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNG 165
>gi|357445711|ref|XP_003593133.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355482181|gb|AES63384.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 491
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
F+ GL+ T+D L+D F +G++V AK+V + SG S+GFGFV + EA +AIE M+
Sbjct: 232 FIGGLAWSTSDRRLKDAFEKYGKLVEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMN 291
Query: 101 G 101
G
Sbjct: 292 G 292
>gi|195028318|ref|XP_001987023.1| GH20198 [Drosophila grimshawi]
gi|193903023|gb|EDW01890.1| GH20198 [Drosophila grimshawi]
Length = 545
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 48/68 (70%), Gaps = 3/68 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T+L V GL+ +TT+++LR+ F ++GEV+ A+I K +SG SKGFGFV++ + EA + +
Sbjct: 107 TDLIVLGLAWKTTEDSLREYFESYGEVLMAQIKKDVKSGQSKGFGFVRFGSYEAQMRVLA 166
Query: 98 G---MDGK 102
+DG+
Sbjct: 167 NRHLIDGR 174
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTFSAFG ++ ++ + ESG SKG+GFV + T EAA K+I+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCRVAQD-ESGSSKGYGFVHFETEEAANKSIDR 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + K++ E G SKGFGFV ++ E A KA+
Sbjct: 296 VNLYVKNLDDTIDDERLRKEFAPFGTITSVKVMM--EDGRSKGFGFVCFSLAEEATKAVT 353
Query: 98 GMDGKV 103
M+G++
Sbjct: 354 EMNGRI 359
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + TD+ L++ F +G + K++ ++ G S+GFGFV + AA +A+
Sbjct: 192 TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMS-KDDGKSRGFGFVAFEDPNAADRAVA 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 DLNGK 255
>gi|255573326|ref|XP_002527590.1| conserved hypothetical protein [Ricinus communis]
gi|223533029|gb|EEF34792.1| conserved hypothetical protein [Ricinus communis]
Length = 66
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 45 LSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV 103
+S RTT+E+LR+ F FG++V +V + + +GF F++YAT E + KAIEGM GKV
Sbjct: 7 ISFRTTEESLRNAFQNFGKLVEVNLVMDKIANRPRGFAFLRYATEEESQKAIEGMHGKV 65
>gi|409082711|gb|EKM83069.1| hypothetical protein AGABI1DRAFT_118461 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426200576|gb|EKV50500.1| hypothetical protein AGABI2DRAFT_183573 [Agaricus bisporus var.
bisporus H97]
Length = 296
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEV-VHAKIVKHRESGYSKGFGFVKYATL 89
+ Q + NLF+ L + + L DTFSAFG + AKI + SG SKG+GFV Y
Sbjct: 92 KKQLDVGANLFIGNLDENVDERLLYDTFSAFGMMATTAKIARDTGSGISKGYGFVSYTDF 151
Query: 90 EAAGKAIEGMDGK 102
E++ AIE M+G+
Sbjct: 152 ESSDAAIESMNGQ 164
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS +G + AK++ ESG+SKGFGFV +++ E A KA+
Sbjct: 248 NLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMT--ESGHSKGFGFVCFSSPEEATKAVTE 305
Query: 99 MDGKV 103
M+G++
Sbjct: 306 MNGRI 310
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTFS FG ++ K+V E G S+GFGFV + T EAA +AI
Sbjct: 100 NIFIKNLDDSIDNKALYDTFSTFGNILSCKVVCD-EHG-SRGFGFVHFETREAASQAIST 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
>gi|297598418|ref|NP_001045556.2| Os01g0974600 [Oryza sativa Japonica Group]
gi|215768629|dbj|BAH00858.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222619969|gb|EEE56101.1| hypothetical protein OsJ_04953 [Oryza sativa Japonica Group]
gi|255674125|dbj|BAF07470.2| Os01g0974600 [Oryza sativa Japonica Group]
Length = 116
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GLS T + L+D FS G ++ K++ H +G SKG+GFVK+A+ + A A+ M
Sbjct: 39 LFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKM 98
Query: 100 DGKV 103
G+V
Sbjct: 99 GGEV 102
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L + + L DTFS+FG +V K+ SG SKG+GFV+YA E+A KAIE
Sbjct: 109 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEK 167
Query: 99 MDG 101
++G
Sbjct: 168 LNG 170
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V L++ TTD+ L++ F +G++ A ++K E G SKGFGFV + + A +A+E
Sbjct: 199 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVE 257
Query: 98 GMDG 101
++G
Sbjct: 258 SLNG 261
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+NL+V L +DE L++ FS FG V +K+++ +G SKG GFV +AT E A +A+
Sbjct: 301 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAM 359
Query: 97 EGMDGKV 103
+ GK+
Sbjct: 360 SQLSGKM 366
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T+L+V L TD L D F G VV ++ + + S G+G+V + + A +AI
Sbjct: 19 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 78
Query: 97 EGMD 100
+ ++
Sbjct: 79 QELN 82
>gi|413938541|gb|AFW73092.1| hypothetical protein ZEAMMB73_850373 [Zea mays]
Length = 207
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL+ T+ + LR + FG+++ A ++ R SG SKG+GFV + E+A KA E
Sbjct: 32 TKVFVGGLAWETSSDRLRRFYERFGDILEAVVITDRHSGRSKGYGFVTFREAESASKACE 91
Query: 98 G----MDGKVSLCMASFLHALARIINPFP 122
+DG+ + C L +L R +P P
Sbjct: 92 DPTPVIDGRRANCN---LASLGRAQHPVP 117
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ + DTF+AFG ++ K+ + E+G SKG+GFV + T EAA K+IE
Sbjct: 100 NVFIKNLDKTIDNKAMYDTFTAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK 158
Query: 99 MDG 101
++G
Sbjct: 159 VNG 161
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F+ FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 296 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 353
Query: 98 GMDGKV 103
M+G++
Sbjct: 354 EMNGRI 359
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + +DE LR+ F +G + K++ ++E G S+GFGFV + +AA +A
Sbjct: 192 TNVYVKNFGEDFSDEMLREMFEKYGRITSHKVM-YKEDGSSRGFGFVAFEDPDAAERACM 250
Query: 98 GMDGK 102
++GK
Sbjct: 251 ELNGK 255
>gi|389632187|ref|XP_003713746.1| hypothetical protein MGG_04816 [Magnaporthe oryzae 70-15]
gi|351646079|gb|EHA53939.1| hypothetical protein MGG_04816 [Magnaporthe oryzae 70-15]
Length = 236
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ LF+ GL+ T + TLR F +G V A +VK R++G S+GFGFV+Y + A KAI
Sbjct: 57 SKLFIGGLAWHTEEGTLRQKFEEYGVVEEAVVVKDRDTGRSRGFGFVRYTNEDDAQKAIT 116
Query: 98 GMD 100
M+
Sbjct: 117 AMN 119
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
R +A TN+++ DE L+D FS +G+ + K++ SG SKGFGFV + + E
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHE 299
Query: 91 AAGKAIEGMDGK 102
AA KA+E M+G+
Sbjct: 300 AAKKAVEEMNGR 311
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++TL + FSAFG+++ +K++ + SKG+ FV + AA +AIE
Sbjct: 157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEE 214
Query: 99 MDGKV 103
M+GK+
Sbjct: 215 MNGKL 219
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
+R + L++ L DE LR+ FS+FG + K+++ E G SKGFG + +++
Sbjct: 343 ERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSP 400
Query: 90 EAAGKAIEGMDGKV 103
E A KA+ M+G++
Sbjct: 401 EDATKAMTEMNGRI 414
>gi|326533434|dbj|BAK05248.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 79
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 53 TLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL 105
T D FS +GEV+ A+I+ RESG SKGFGFV Y + EAA AI MDGK+ L
Sbjct: 19 TQLDAFSGYGEVIEARIIMDRESGRSKGFGFVTYESTEAAAAAISAMDGKLRL 71
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|449493337|ref|XP_004175378.1| PREDICTED: RNA-binding protein 24 isoform 2 [Taeniopygia guttata]
Length = 184
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>gi|395330318|gb|EJF62702.1| hypothetical protein DICSQDRAFT_104224 [Dichomitus squalens
LYAD-421 SS1]
Length = 344
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEV-VHAKIVKHRESGYSKGFGFVKYATL 89
+ Q + NLF+ L + + L DTFSAFG + AKI + ++G SKG+GFV Y
Sbjct: 92 KKQLDVGANLFIGNLDENVDERLLYDTFSAFGMMATTAKIARDPQTGKSKGYGFVSYTDF 151
Query: 90 EAAGKAIEGMDGK 102
E++ AIE M+G+
Sbjct: 152 ESSDAAIESMNGQ 164
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L + ++ L DTF+AFGE++ K V E G S+GF FV Y T EAA AI+G
Sbjct: 129 NIFIKNLDESIDNKALHDTFAAFGEILSCK-VGVDEDGKSRGFAFVHYQTGEAADAAIKG 187
Query: 99 MDG 101
+DG
Sbjct: 188 VDG 190
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L D+ LR F +FG + K++K E G S+ FGFV Y++ E A KA+
Sbjct: 325 NLYVKNLDDEWDDDRLRAEFDSFGTITSCKVMKD-ERGVSRNFGFVCYSSPEEATKAVSE 383
Query: 99 MDGKV 103
M+GK+
Sbjct: 384 MNGKM 388
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+FV + T++ D S FGE V + E G SKGFGFV Y + EAA KA++
Sbjct: 221 TNVFVKNVDLSVTEKEFEDLVSKFGETVSIAL-SLDEEGKSKGFGFVNYVSHEAAEKAVD 279
Query: 98 GMDGK 102
++ K
Sbjct: 280 ELNDK 284
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 75 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 132
Query: 99 MDG 101
M+G
Sbjct: 133 MNG 135
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 269 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 326
Query: 98 GMDGKV 103
M+G++
Sbjct: 327 EMNGRI 332
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 166 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 224
Query: 98 GMDGK 102
M+GK
Sbjct: 225 EMNGK 229
>gi|357131533|ref|XP_003567391.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 141
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
LFV+GLS + +L D FS+FG V +I+ + SG S+GFGFV+++ A A +
Sbjct: 48 KLFVAGLSWSADERSLMDAFSSFGTVTEVRIMYDKNSGRSRGFGFVQFSNDYEAKCAKDA 107
Query: 99 MDGKVSL 105
MDGKV L
Sbjct: 108 MDGKVML 114
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|258546236|ref|ZP_05706470.1| RNA-binding protein [Cardiobacterium hominis ATCC 15826]
gi|258518502|gb|EEV87361.1| RNA-binding protein [Cardiobacterium hominis ATCC 15826]
Length = 102
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N++V LS + T++ LR+ F++ GEV + I+K R+SG SKGFGFV+ A +AI+
Sbjct: 3 NIYVGNLSYQATEQELREMFASHGEVGNVTIIKDRDSGRSKGFGFVEMNDNSAGLRAIDA 62
Query: 99 MDGK 102
++GK
Sbjct: 63 LNGK 66
>gi|58258845|ref|XP_566835.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57222972|gb|AAW41016.1| single-stranded DNA binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 441
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 25 SLNPPQRPQA-----EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSK 79
S+ P ++ +A E +TN+FV LS ++ L+ F + GEVV A++V R+S S+
Sbjct: 175 SIAPAKKARADGGDEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSR 234
Query: 80 GFGFVKYATLEAAGKAIE 97
GFG+V++A LE++ KAIE
Sbjct: 235 GFGYVEFADLESSAKAIE 252
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 43/69 (62%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
Q+ P+ L++ LS T++ + + F G+V ++ R++G KGFG+V++++++ A
Sbjct: 288 QSPPAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDA 347
Query: 93 GKAIEGMDG 101
A++ M+G
Sbjct: 348 SAALKAMNG 356
>gi|134106861|ref|XP_777972.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260672|gb|EAL23325.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 444
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 25 SLNPPQRPQA-----EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSK 79
S+ P ++ +A E +TN+FV LS ++ L+ F + GEVV A++V R+S S+
Sbjct: 178 SIAPAKKARADGGDEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSR 237
Query: 80 GFGFVKYATLEAAGKAIE 97
GFG+V++A LE++ KAIE
Sbjct: 238 GFGYVEFADLESSAKAIE 255
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 43/69 (62%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
Q+ P+ L++ LS T++ + + F G+V ++ R++G KGFG+V++++++ A
Sbjct: 291 QSPPAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDA 350
Query: 93 GKAIEGMDG 101
A++ M+G
Sbjct: 351 SAALKAMNG 359
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDA 244
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 245 NKAVEEMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|392567732|gb|EIW60907.1| hypothetical protein TRAVEDRAFT_146596 [Trametes versicolor
FP-101664 SS1]
Length = 337
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEV-VHAKIVKHRESGYSKGFGFVKYATL 89
+ Q + NLF+ L + + L DTFSAFG + AKI + SG SKG+GFV Y
Sbjct: 92 KKQLDVGANLFIGNLDENVDERLLYDTFSAFGMMATTAKIARDPTSGKSKGYGFVSYTDF 151
Query: 90 EAAGKAIEGMDGK 102
E++ AIE M+G+
Sbjct: 152 ESSDAAIESMNGQ 164
>gi|340381114|ref|XP_003389066.1| PREDICTED: splicing factor 3B subunit 4-like [Amphimedon
queenslandica]
Length = 364
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLF+ L ++ L D FSAFG ++ A KI++ +SG SKGF FV +A+ +A+ AIE
Sbjct: 101 NLFIGNLDPEIDEKMLYDIFSAFGVILQAPKIMRDVDSGGSKGFAFVNFASFDASDAAIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQY-LC 168
>gi|326926008|ref|XP_003209198.1| PREDICTED: nucleolin-like [Meleagris gallopavo]
Length = 425
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
+ S LFV GLS+ TT+ETLR++F + A+IV R++G SKGFGFV +++ E A
Sbjct: 290 QQSKTLFVRGLSEDTTEETLRESFEG---SISARIVTDRDTGSSKGFGFVDFSSPEDAKA 346
Query: 95 AIEGM-DGKVS 104
A E M DG++
Sbjct: 347 AKEAMEDGEID 357
>gi|294949580|ref|XP_002786268.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239900425|gb|EER18064.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 100
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+NL V+ L R +E L F AFG + KIV+ R +G S GFGFV Y E+A +AIE
Sbjct: 4 SNLIVNYLPTRMDEEALFSMFEAFGPIQSVKIVRDRHTGNSMGFGFVNYRDNESARRAIE 63
Query: 98 GMDGKVSLCMAS 109
++G+ C AS
Sbjct: 64 AVNGREIECDAS 75
>gi|255568010|ref|XP_002524982.1| RNA binding protein, putative [Ricinus communis]
gi|223535726|gb|EEF37389.1| RNA binding protein, putative [Ricinus communis]
Length = 371
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S N GLS T+++TLR F FGE+V KI+ + S SKG+ F++Y T EAA A+
Sbjct: 278 SENKDYEGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAANAAL 337
Query: 97 EGMDGKV 103
+ M+GK+
Sbjct: 338 KEMNGKI 344
>gi|168015710|ref|XP_001760393.1| predicted protein [Physcomitrella patens subsp. patens]
gi|21388658|dbj|BAC00785.1| glycine-rich RNA binding protein [Physcomitrella patens]
gi|76262794|gb|ABA41484.1| glycine-rich RNA binding protein [Physcomitrella patens]
gi|162688407|gb|EDQ74784.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 162
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
FV GL+ TTD L F FGEVV +K++ RE+G S+GFGFV +A + AI+ M
Sbjct: 9 CFVGGLAWATTDGRLEGAFRPFGEVVQSKVISDRETGRSRGFGFVTFADENSMNAAIKEM 68
Query: 100 DGK 102
+G+
Sbjct: 69 NGQ 71
>gi|185133178|ref|NP_001117016.1| hyperosmotic glycine rich protein [Salmo salar]
gi|28173040|gb|AAO32675.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 205
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LFV GLS TT+++L + FS +G + ++ RE+G +GFGFVKY E A A++ M
Sbjct: 7 LFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAM 66
Query: 100 DGK 102
+G+
Sbjct: 67 NGQ 69
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L + + L DTFS+FG +V K+ SG SKG+GFV+YA E+A KAIE
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEK 183
Query: 99 MDG 101
++G
Sbjct: 184 LNG 186
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V L++ TTD+ L++ F +G++ A ++K E G SKGFGFV + + A +A+E
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVE 273
Query: 98 GMDG 101
++G
Sbjct: 274 SLNG 277
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+NL+V L +DE L++ FS FG V +K+++ +G SKG GFV +AT E A +A+
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAM 375
Query: 97 EGMDGKV 103
+ GK+
Sbjct: 376 SQLSGKM 382
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T+L+V L TD L D F G VV ++ + + S G+G+V + + A +AI
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 97 EGMD 100
+ ++
Sbjct: 95 QELN 98
>gi|115448273|ref|NP_001047916.1| Os02g0714000 [Oryza sativa Japonica Group]
gi|113537447|dbj|BAF09830.1| Os02g0714000 [Oryza sativa Japonica Group]
gi|215707046|dbj|BAG93506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 287
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL+ TT E LR + FGE++ A ++ R SG SKG+GFV + E+A KA E
Sbjct: 37 TKVFVGGLAWETTSERLRRFYDRFGEILEAVVITDRHSGRSKGYGFVTFRDPESARKACE 96
Query: 98 G----MDGKVSLC 106
+DG+ + C
Sbjct: 97 DPTPVIDGRRANC 109
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 87 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETHEAAERAIEK 144
Query: 99 MDG 101
M+G
Sbjct: 145 MNG 147
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 281 VNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 338
Query: 98 GMDGKV 103
M+G++
Sbjct: 339 EMNGRI 344
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ FS +G + +++ +SG SKGFGFV + E A KA++
Sbjct: 178 TNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQKAVD 236
Query: 98 GMDGK 102
M+GK
Sbjct: 237 DMNGK 241
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
R +A TN+++ DE L+D FS +G+ + K++ SG SKGFGFV + + E
Sbjct: 240 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHE 298
Query: 91 AAGKAIEGMDGK 102
AA KA+E M+G+
Sbjct: 299 AAKKAVEEMNGR 310
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++TL + FSAFG+++ +K++ + SKG+ FV + AA +AIE
Sbjct: 156 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEE 213
Query: 99 MDGKV 103
M+GK+
Sbjct: 214 MNGKL 218
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
+R + L++ L DE LR+ FS+FG + K+++ E G SKGFG + +++
Sbjct: 342 ERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSP 399
Query: 90 EAAGKAIEGMDGKV 103
E A KA+ M+G++
Sbjct: 400 EDATKAMTEMNGRI 413
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + + TT+E RD F FGE+ A + + ESG S+GFGFV + + + A A+E
Sbjct: 236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVE 295
Query: 98 GMDGK 102
++ K
Sbjct: 296 ALNDK 300
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E G SKG+GFV Y T EAA AI+
Sbjct: 144 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKH 202
Query: 99 MDG 101
++G
Sbjct: 203 VNG 205
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
R +A TN+++ DE L+D FS +G+ + K++ SG SKGFGFV + + E
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHE 299
Query: 91 AAGKAIEGMDGK 102
AA KA+E M+G+
Sbjct: 300 AAKKAVEEMNGR 311
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++TL + FSAFG+++ +K++ + SKG+ FV + AA +AIE
Sbjct: 157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEE 214
Query: 99 MDGKV 103
M+GK+
Sbjct: 215 MNGKL 219
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L++ L DE LR+ FS+FG + K+++ E G SKGFG + +++ E A KA+ M
Sbjct: 353 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAMTEM 410
Query: 100 DGKV 103
+G++
Sbjct: 411 NGRI 414
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + + TT+E RD F FGE+ A + + ESG S+GFGFV + + + A A+E
Sbjct: 236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVE 295
Query: 98 GMDGK 102
++ K
Sbjct: 296 ALNDK 300
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E G SKG+GFV Y T EAA AI+
Sbjct: 144 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKH 202
Query: 99 MDG 101
++G
Sbjct: 203 VNG 205
>gi|256086132|ref|XP_002579259.1| nucleolysin tia-1 [Schistosoma mansoni]
gi|353232225|emb|CCD79580.1| putative nucleolysin tia-1 [Schistosoma mansoni]
Length = 547
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
Q++ S ++FV L+ DETL FS FG + KI+K + KG+GFV YAT + A
Sbjct: 28 QSDNSFHIFVGDLAPEVQDETLLAAFSNFGTITECKIIKDMHTQKPKGYGFVAYATRQEA 87
Query: 93 GKAIEGMDGKV 103
+AI M+G++
Sbjct: 88 ERAIRIMNGQI 98
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T ++V G++ T++ L+D+F FGE+ +I K KGF F+++ + AA +AI
Sbjct: 137 NTTIYVGGITNELTEKLLQDSFKQFGEIKEIRIFK------DKGFSFIRFDSHVAATQAI 190
Query: 97 EGMDGKV 103
M GK+
Sbjct: 191 VTMHGKI 197
>gi|168024568|ref|XP_001764808.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684102|gb|EDQ70507.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 414
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NLFV L ++ L DTFSAFG +V + KI++ +SG S+GFGF+ Y + EA+ AIE
Sbjct: 113 NLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDSGNSRGFGFISYDSFEASDSAIE 172
Query: 98 GMDGK 102
M+G+
Sbjct: 173 AMNGQ 177
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDA 244
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 245 NKAVEEMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + + TT+E RD F FGE+ A + + ESG S+GFGFV + + + A A+E
Sbjct: 236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVE 295
Query: 98 GMDGK 102
++ K
Sbjct: 296 ALNDK 300
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E G SKG+GFV Y T EAA AI+
Sbjct: 144 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKH 202
Query: 99 MDG 101
++G
Sbjct: 203 VNG 205
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDA 244
Query: 93 GKAIEGMDGK 102
KA+E M+GK
Sbjct: 245 NKAVEEMNGK 254
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+A+ TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDA 244
Query: 93 GKAIEGMDGK 102
KA++ M+GK
Sbjct: 245 QKAVDEMNGK 254
>gi|341882220|gb|EGT38155.1| hypothetical protein CAEBREN_32522 [Caenorhabditis brenneri]
gi|341882722|gb|EGT38657.1| hypothetical protein CAEBREN_06124 [Caenorhabditis brenneri]
Length = 388
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV L ++ L DTFSAFG ++ KI++ +SG SKGF F+ +A+ EA+ A+E
Sbjct: 101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQF-LC 168
>gi|9757907|dbj|BAB08354.1| unnamed protein product [Arabidopsis thaliana]
Length = 112
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 47/66 (71%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+N ++GLS TTD++LR F+ FG++ ++++K +++ KGFGF+ + + + A KA++
Sbjct: 21 SNCSLAGLSAYTTDQSLRQLFAPFGQITESRLIKDQQTQRPKGFGFITFESEDDAQKALK 80
Query: 98 GMDGKV 103
++GK+
Sbjct: 81 ALNGKI 86
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
R +A TN+++ DE L+D FS +G+ + K++ SG SKGFGFV + + E
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHE 241
Query: 91 AAGKAIEGMDGK 102
AA KA+E M+G+
Sbjct: 242 AAKKAVEEMNGR 253
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++TL + FSAFG+++ +K++ + SKG+ FV + AA +AIE
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEE 156
Query: 99 MDGKV 103
M+GK+
Sbjct: 157 MNGKL 161
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L+V L DE LR+ FS+FG + K+++ E G SKGFG + +++ E A KA+ M
Sbjct: 295 LYVKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDALKAMTEM 352
Query: 100 DGKV 103
+G++
Sbjct: 353 NGRI 356
>gi|225461650|ref|XP_002283115.1| PREDICTED: uncharacterized protein LOC100267539 [Vitis vinifera]
Length = 794
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TNL++ L D+ L FS FG++V AK++K R +G SKG+GFVKY+ ++ A AI
Sbjct: 495 TNLYIGYLPPTLEDDALIRLFSPFGDIVMAKVIKDRVTGLSKGYGFVKYSDVQQANSAIA 554
Query: 98 GMDG 101
M+G
Sbjct: 555 SMNG 558
>gi|226509575|ref|NP_001149184.1| LOC100282806 [Zea mays]
gi|195625314|gb|ACG34487.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 15 RLFSTSPFSSSLNPPQRPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
RL + + SS +RPQ + P+ +V L + D L FS GEVV AK+V
Sbjct: 177 RLLNVNRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYD 236
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
RE+G S+GFGFV + E AI +DG+
Sbjct: 237 RETGRSRGFGFVSMVSKEELNDAISALDGQ 266
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 24 SSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
+++ PP+ ++V L E L F G V A+++ +RE+G S+GFGF
Sbjct: 100 AAVEPPE------EAKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGF 153
Query: 84 VKYATLEAAGKAIE 97
V +T+E A KAIE
Sbjct: 154 VTMSTVEEADKAIE 167
>gi|413921823|gb|AFW61755.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 15 RLFSTSPFSSSLNPPQRPQAE--PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
RL + + SS +RPQ + P+ +V L + D L FS GEVV AK+V
Sbjct: 177 RLLNVNRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYD 236
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
RE+G S+GFGFV + E AI +DG+
Sbjct: 237 RETGRSRGFGFVSMVSKEELNDAISALDGQ 266
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 24 SSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGF 83
+++ PP+ ++V L E L F G V A+++ +RE+G S+GFGF
Sbjct: 100 AAVEPPE------EAKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGF 153
Query: 84 VKYATLEAAGKAIE 97
V +T+E A KAIE
Sbjct: 154 VTMSTVEEADKAIE 167
>gi|168029395|ref|XP_001767211.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681466|gb|EDQ67892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 31 RPQAEPSTN-LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
RP A N +FV LS + L++ FS +G+VV A++V RESG S+GFGFV Y+ +
Sbjct: 99 RPAARDDPNKVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDV 158
Query: 90 EAAGKAIEGMDG 101
AI+ +DG
Sbjct: 159 SEVDAAIDSLDG 170
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
L++ L + L FG V +++ +ESG S+GF FV AT E A IE +
Sbjct: 2 LYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIERL 61
Query: 100 DG 101
DG
Sbjct: 62 DG 63
>gi|342183555|emb|CCC93035.1| poly(A)-binding protein 1 [Trypanosoma congolense IL3000]
Length = 557
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
Q + TNL+V L DE L++ F+ FGEV AK V+ + S GF +V YAT EAA
Sbjct: 179 QLKQYTNLYVKNLDPSVDDEKLKEVFAKFGEVTSAK-VRDLGNNSSVGFAYVAYATHEAA 237
Query: 93 GKAIEGMDGKVS 104
KA+E +D K S
Sbjct: 238 AKAVEELDEKSS 249
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V T E L++ F FGE V ++ + + S+ FGFV + AA +AI+
Sbjct: 289 NLYVKNFDDTVTSEKLKELFERFGETVSVSVMMDKATQVSRCFGFVSFKEQSAASQAIQE 348
Query: 99 MDGKVSL 105
+ G +L
Sbjct: 349 LHGSTAL 355
>gi|323451637|gb|EGB07513.1| hypothetical protein AURANDRAFT_59062 [Aureococcus anophagefferens]
Length = 350
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAG 93
E NLFV GL ++ L DTFSAFG + KI++ ++G SKGFGFV Y + EA+
Sbjct: 97 EVGANLFVGGLDVDVDEKLLYDTFSAFGTITETPKIMRDPDTGNSKGFGFVSYDSFEASD 156
Query: 94 KAIEGMDGKVSLC 106
AIE M + LC
Sbjct: 157 LAIECMHNQF-LC 168
>gi|317479260|ref|ZP_07938395.1| RNA recognition domain-containing protein [Bacteroides sp. 4_1_36]
gi|316904548|gb|EFV26367.1| RNA recognition domain-containing protein [Bacteroides sp. 4_1_36]
Length = 101
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+++SGL+ TTD L D FS +GEV A+I+ RE+ S+GFGFV+ A KAI+
Sbjct: 2 NIYISGLNFSTTDADLNDLFSEYGEVSSARIITDRETRRSRGFGFVEMPDDAAGQKAIDE 61
Query: 99 MDG 101
++G
Sbjct: 62 LNG 64
>gi|162463757|ref|NP_001105347.1| nucleic acid binding protein1 [Zea mays]
gi|168526|gb|AAA33486.1| nucleic acid-binding protein [Zea mays]
gi|195637380|gb|ACG38158.1| ribonucleoprotein [Zea mays]
gi|219884029|gb|ACL52389.1| unknown [Zea mays]
gi|414884557|tpg|DAA60571.1| TPA: nucleic acid binding protein1 [Zea mays]
Length = 303
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 8 AAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA 67
AAPRG R ++ P R Q+ PS ++V L + D L + FS G+VV A
Sbjct: 201 AAPRGSR-----------VDRPPR-QSGPSLRIYVGNLPWQVDDSRLVELFSEHGKVVDA 248
Query: 68 KIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
++V RE+G S+GFGFV A+ + AI +DG+
Sbjct: 249 RVVYDRETGRSRGFGFVTMASQDELDDAIAALDGQ 283
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
++V L E L F G V A+++ +RE+ S+GFGFV +T+E A KA+E
Sbjct: 127 VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVE 184
>gi|62955567|ref|NP_001017797.1| cold inducible RNA binding protein [Danio rerio]
gi|62202782|gb|AAH93299.1| Zgc:112425 [Danio rerio]
gi|63100518|gb|AAH95030.1| Zgc:112425 [Danio rerio]
gi|182889498|gb|AAI65256.1| Zgc:112425 protein [Danio rerio]
Length = 185
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
LF+ GLS TT+++L D FS +G + + + ++RE+ S+GFGFV + + A A+EGM
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 100 DGK 102
+GK
Sbjct: 67 NGK 69
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,958,760,417
Number of Sequences: 23463169
Number of extensions: 73597284
Number of successful extensions: 241978
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 16555
Number of HSP's successfully gapped in prelim test: 5136
Number of HSP's that attempted gapping in prelim test: 205566
Number of HSP's gapped (non-prelim): 35438
length of query: 126
length of database: 8,064,228,071
effective HSP length: 92
effective length of query: 34
effective length of database: 10,200,583,819
effective search space: 346819849846
effective search space used: 346819849846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)