BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033146
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
ST LF+ GLS T D +LRD F+ FG+VV AK++ RE+G S+GFGFV + AA AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 97 EGMDGK 102
MDGK
Sbjct: 94 SEMDGK 99
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+ LFV GLS T D +L+ F++FGEV A ++ RE+G S+GFGFV ++ ++A AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 97 EGMDGK 102
+ MDGK
Sbjct: 94 KEMDGK 99
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+E FV GL+ T DE L+ TFS FG+V+ +KI+ RESG S+GFGFV + +A
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 94 KAIEGMDGK 102
AIE M+GK
Sbjct: 62 DAIEEMNGK 70
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
A+ FV GL T D++L++ FS +G+V+ +KI+ RE+G S+GFGFV +A+ EA
Sbjct: 2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61
Query: 94 KAIEGMDGK 102
+AIE M+G+
Sbjct: 62 QAIEAMNGQ 70
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
AE FV GL+ T DE+L FS FG++ +KI+ RE+G S+GFGFV + ++
Sbjct: 2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61
Query: 94 KAIEGMDGK 102
AIEGM+G+
Sbjct: 62 DAIEGMNGQ 70
>sp|Q9FZ84|RBG6_ARATH Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis
thaliana GN=RBG6 PE=2 SV=1
Length = 155
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+ +FV GLS T E L++ F +FG++V A +V RESG S+GFGFV Y ++E A A++
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 98 GMDGK 102
M K
Sbjct: 96 AMQNK 100
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 554 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 596
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 597 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 638
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 552 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 594
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 595 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 636
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 20/104 (19%)
Query: 2 ALRAAVAAPRGLRRLFSTSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAF 61
A+R + PRG SP + S +PS LFV GLS+ TT+ETL+++F
Sbjct: 553 AIRLELQGPRG-------SPNARS---------QPSKTLFVKGLSEDTTEETLKESFDG- 595
Query: 62 GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVS 104
V A+IV RE+G SKGFGFV + + E A A E M DG++
Sbjct: 596 --SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 637
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T +ETL F+ FG+V+ +K++ RE+G S+GFGFV +++ ++ AIE M+
Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 25 SLNPPQRPQA---EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF 81
SL+ P QA S+ LF+ G++ +++LR+ F+ +GEVV +++ RE+G S+GF
Sbjct: 24 SLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGF 83
Query: 82 GFVKYATLEAAGKAIEGMDGK 102
GFV + + EAA AI+ +DG+
Sbjct: 84 GFVTFTSSEAASSAIQALDGR 104
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 564 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 620
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 621 KAAKEAMEDGEID 633
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 570 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 626
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 627 KAAKEAMEDGEID 639
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAA 92
+++PS LFV GLS+ TT+ETL+++F V A+IV RE+G SKGFGFV + + E A
Sbjct: 567 RSQPSKTLFVKGLSEDTTEETLKESFEG---SVRARIVTDRETGSSKGFGFVDFNSEEDA 623
Query: 93 GKAIEGM-DGKVS 104
A E M DG++
Sbjct: 624 KAAKEAMEDGEID 636
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 46/62 (74%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T++E+L + F+++GE++ +K++ RE+G S+GFGFV +++ + AIE M+
Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70
Query: 101 GK 102
GK
Sbjct: 71 GK 72
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A R++ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRVMQP 97
>sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2
Length = 335
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NLFV L + L DTFSA G++V A V E+G SKG+GFV Y + E A AIE
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
Query: 99 MDGK 102
M+ +
Sbjct: 160 MNNQ 163
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D L FS +GEV+ +KI+ RE+G S+GFGFV + ++ AIEGM+
Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T + +L FS FGE+V +KI+ RE+G S+GFGFV + ++ AIEGM+
Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FGE+ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%)
Query: 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93
+E FV GL+ T D L TFS FGEV+ +KI+ RE+G S+GFGFV + ++
Sbjct: 2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMK 61
Query: 94 KAIEGMDGK 102
AI+ M+GK
Sbjct: 62 DAIDEMNGK 70
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 41 FVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100
FV GL+ T D L F+ +G+V+ +KI+ RE+G S+GFGFV + +A AIEGM+
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 101 GK 102
G+
Sbjct: 71 GQ 72
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V +S TDE RD F+ +G+V + + + E G S+GFGFV + T E A KA+E
Sbjct: 246 TNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSRGFGFVNFTTHECAAKAVE 304
Query: 98 GMDGK 102
++GK
Sbjct: 305 ELNGK 309
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+F+ L ++ L DTF+AFG ++ K+ + E+G SKG+GFV Y T EAA +AI+
Sbjct: 154 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIK 211
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 44/109 (40%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVK--------------------------- 71
NL++ L+ D+ LR FS +G + AK+++
Sbjct: 350 NLYIKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAA 409
Query: 72 -----------------HRESGYSKGFGFVKYATLEAAGKAIEGMDGKV 103
R G SKGFGFV ++ + A KA+ M+ ++
Sbjct: 410 EAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRM 458
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEA 91
P + S +L+V L T+ L + FS G V ++ + + S G+ +V Y +
Sbjct: 59 PHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSD 118
Query: 92 AGKAIEGMD 100
KA+E ++
Sbjct: 119 GEKALEELN 127
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 15 RLFS--TSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH 72
RLFS +S ++S + Q + S+ +FV G+S T + LR+ FS +GEVV AKI+
Sbjct: 9 RLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVD 68
Query: 73 RESGYSKGFGFVKYATLEAAGKAIEGMDGK 102
RE+G S+GF FV + + E A A++ +DG+
Sbjct: 69 RETGRSRGFAFVTFTSTEEASNAMQ-LDGQ 97
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIINP 120
+DG+ + ++L A RI+ P
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRIMQP 97
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AIE
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L+D F FG + K++ ESG SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S LFV GLS+ TT+ETLR++F + A+IV R++G SKGFGFV +++ E A A
Sbjct: 552 SKTLFVRGLSEDTTEETLRESFEG---SISARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 608
Query: 97 EGM-DGKVS 104
E M DG++
Sbjct: 609 EAMEDGEID 617
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S L V+ LS ++ETL++ F + K+ ++ + G KG+ FV++ T E A +A+
Sbjct: 460 SKTLIVNNLSYAASEETLQELFK---KATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEAL 515
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+FV L ++ L DTFSAFG ++ KI++ +SG SKGF F+ +A+ EA+ A+E
Sbjct: 101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQF-LC 168
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
++V GL ++ ++ L + G VV + K R + +GFGFV++ E A AI+
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIK 72
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE+L++ FS FG+ + K+++ +G SKGFGFV Y E A KA+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+ FV + T EAA KAIE
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL++ L DE LR FS FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L + + L DTFS+FG +V K+ SG SKG+GFV+YA E+A KAIE
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEK 183
Query: 99 MDG 101
++G
Sbjct: 184 LNG 186
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V L++ TTD+ L++ F +G++ A ++K E G SKGFGFV + + A +A+E
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVE 273
Query: 98 GMDG 101
++G
Sbjct: 274 SLNG 277
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S+NL+V L +DE L++ FS FG V +K+++ +G SKG GFV +AT E A +A+
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAM 375
Query: 97 EGMDGKV 103
+ GK+
Sbjct: 376 SQLSGKM 382
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+T+L+V L TD L D F G VV ++ + + S G+G+V + + A +AI
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 97 EGMD 100
+ ++
Sbjct: 95 QELN 98
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V + + TT+E RD F FGE+ A + + ESG S+GFGFV + + + A A+E
Sbjct: 236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVE 295
Query: 98 GMDGK 102
++ K
Sbjct: 296 ALNDK 300
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E G SKG+GFV Y T EAA AI+
Sbjct: 144 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKH 202
Query: 99 MDG 101
++G
Sbjct: 203 VNG 205
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVK 71
NL++ LS DE LR+ FS++G + AK+++
Sbjct: 341 NLYIKNLSDDIDDEKLRELFSSYGTITSAKVMR 373
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
S +L+V L T+ L + FS+ G+V ++ + + S G+ +V Y +A+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 97 EGMD 100
E ++
Sbjct: 114 EDLN 117
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NLF+ L DE L+ FSAFG + AKI+ E G SKGFGFV Y T E A KA+
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTE 423
Query: 99 MDGKV 103
M+ ++
Sbjct: 424 MNQRM 428
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTFSAFG+++ K+ E G +KG+GFV + ++E+A AIE
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEH 227
Query: 99 MDG 101
++G
Sbjct: 228 VNG 230
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ L T++ D F FGE+ +VK ++ +GFGFV YA E A KA++
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVD 319
Query: 98 GMDGK 102
++ K
Sbjct: 320 ELNDK 324
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AI+
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L DE LR F FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ DE L++ F +G + K++ ++G SKGFGFV + E A KA++
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++ L DTFSAFG ++ K+V E+G SKG+GFV + T EAA +AI+
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDK 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
NL+V L DE LR F+ FG + AK++ E G SKGFGFV +++ E A KA+
Sbjct: 295 NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTE 352
Query: 99 MDGKV 103
M+G++
Sbjct: 353 MNGRI 357
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + DE L++ F +G + K++ + G S+GFGFV + E A KA++
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVD 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 DMNGK 254
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLE 90
R +A TN+++ DE L+D FS +G+ + K++ SG SKGFGFV + + E
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHE 241
Query: 91 AAGKAIEGMDGK 102
AA KA+E M+G+
Sbjct: 242 AAKKAVEEMNGR 253
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL 89
+R + L++ L DE LR+ FS+FG + K+++ E G SKGFG + +++
Sbjct: 285 ERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSP 342
Query: 90 EAAGKAIEGMDGKV 103
E A KA+ M+G++
Sbjct: 343 EDATKAMTEMNGRI 356
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L K ++TL + FSAFG+++ +K++ + SKG+ FV + AA +AIE
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEE 156
Query: 99 MDGKV 103
M+GK+
Sbjct: 157 MNGKL 161
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V ++ TDE R+ F+ FGEV + + + +E G S+GFGFV + T EAA +A++
Sbjct: 241 TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVD 299
Query: 98 GMDGK 102
++GK
Sbjct: 300 ELNGK 304
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L ++ L DTF+AFG ++ K+ + E G SKG+GFV Y T EAA +AI+
Sbjct: 149 NIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKH 207
Query: 99 MDG 101
++G
Sbjct: 208 VNG 210
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGK 94
+ S +L+V L T+ L + FS G V ++ + + S G+ +V Y T K
Sbjct: 57 QASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEK 116
Query: 95 AIEGMD 100
A+E ++
Sbjct: 117 ALEELN 122
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 40/105 (38%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVK--------------------------- 71
NL++ L D+ LR FS +G + AK+++
Sbjct: 345 NLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEE 404
Query: 72 -------------HRESGYSKGFGFVKYATLEAAGKAIEGMDGKV 103
R+ G SKGFGFV ++ + A KA+ M+ ++
Sbjct: 405 QNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRM 449
>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2
SV=1
Length = 409
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96
+++L V GL +TT++ L+D FS FGEV+ ++ K ++G+SKGFGFV++A E K +
Sbjct: 104 TSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVM 163
Query: 97 EG---MDGKVSLC 106
+DG+ C
Sbjct: 164 SQRHMIDGRWCDC 176
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 21 PFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKG 80
P S S + P R S +FV ++ + E LR FS +GEVV I K +
Sbjct: 179 PNSKSPDEPMR-----SRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKP-----FRA 228
Query: 81 FGFVKYATLEAA 92
F FV +A + A
Sbjct: 229 FAFVTFADDQVA 240
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN+++ + D+ LR+ FSAFG + K++ +SG S+GFGFV Y E A KA+
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 98 GMDGK 102
M+GK
Sbjct: 250 EMNGK 254
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98
N+F+ L + ++ L DTFSAFG ++ K+V E G S+G+GFV + T EAA +AI+
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETHEAANRAIQT 157
Query: 99 MDG 101
M+G
Sbjct: 158 MNG 160
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
NL+V L D+ LR F +G + AK++ E G+SKGFGFV +++ E A KA+
Sbjct: 294 VNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVT 351
Query: 98 GMDGKV 103
M+G++
Sbjct: 352 EMNGRI 357
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
TN++V L K TD+ L+ TF +G++ A ++K +SG S+ FGFV + + EAA A+E
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVE 297
Query: 98 GMDG 101
M+G
Sbjct: 298 KMNG 301
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
+NL++ L DE L++ FS +G V K++ + + G S+GFGFV Y+ E A A++
Sbjct: 342 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMK 400
Query: 98 GMDGKV 103
M+GK+
Sbjct: 401 EMNGKM 406
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 35 EPST------NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT 88
+PST N+F+ L ++ L +TFS+FG ++ K+ G SKG+GFV++
Sbjct: 137 DPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEK 195
Query: 89 LEAAGKAIEGMDG 101
E A AI+ ++G
Sbjct: 196 EETAQAAIDKLNG 208
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVK---HRESGYSKGFGFVKYATL 89
Q P+++L+V L + L D F+ V + ++ + HR GY+ +V +A
Sbjct: 54 QTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYA----YVNFANP 109
Query: 90 EAAGKAIEGMD 100
E A +A+E ++
Sbjct: 110 EDASRAMESLN 120
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
T +FV GL TTD +LR F FG++ A ++ R++G S+G+GFV A AA +A +
Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 98 G----MDGKVSLCMASFLHALARIIN 119
+DG+ + ++L A R I
Sbjct: 71 DPNPIIDGRKANVNLAYLGAKPRSIQ 96
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+F+ L ++ L DTFSAFG ++ KI++ ++G SKG+ F+ +A+ +A+ AIE
Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQY-LC 168
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V GL ++ ++ L + F G VV+ + K R +G +G+GFV++ + E A AI+ M
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 100 D 100
+
Sbjct: 75 N 75
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIE 97
N+F+ L ++ L DTFSAFG ++ KI++ ++G SKG+ F+ +A+ +A+ AIE
Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 98 GMDGKVSLC 106
M+G+ LC
Sbjct: 161 AMNGQY-LC 168
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99
++V GL ++ ++ L + F G VV+ + K R +G +G+GFV++ + E A AI+ M
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 100 D 100
+
Sbjct: 75 N 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,344,840
Number of Sequences: 539616
Number of extensions: 1758616
Number of successful extensions: 6268
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 229
Number of HSP's that attempted gapping in prelim test: 4747
Number of HSP's gapped (non-prelim): 1465
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)