Query 033146
Match_columns 126
No_of_seqs 120 out of 1365
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:23:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 9.4E-21 2E-25 120.3 13.6 85 34-118 31-115 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.1E-18 2.5E-23 124.8 13.8 81 37-117 269-349 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.2E-18 4.7E-23 123.4 11.5 83 36-118 2-84 (352)
4 TIGR01659 sex-lethal sex-letha 99.8 3.8E-18 8.2E-23 121.9 12.2 84 33-116 103-186 (346)
5 PF00076 RRM_1: RNA recognitio 99.8 4.6E-18 1E-22 95.0 9.9 70 40-110 1-70 (70)
6 KOG0122 Translation initiation 99.8 5.2E-18 1.1E-22 113.1 11.6 82 35-116 187-268 (270)
7 PF14259 RRM_6: RNA recognitio 99.7 1.1E-16 2.3E-21 89.8 9.8 70 40-110 1-70 (70)
8 KOG0121 Nuclear cap-binding pr 99.7 3E-17 6.5E-22 99.9 7.1 83 35-117 34-116 (153)
9 TIGR01645 half-pint poly-U bin 99.7 1.6E-16 3.6E-21 119.6 12.0 82 36-117 203-284 (612)
10 TIGR01659 sex-lethal sex-letha 99.7 1.6E-16 3.5E-21 113.6 11.3 82 36-117 192-275 (346)
11 TIGR01645 half-pint poly-U bin 99.7 1.1E-16 2.5E-21 120.5 10.7 80 36-115 106-185 (612)
12 KOG4207 Predicted splicing fac 99.7 3.8E-17 8.2E-22 106.9 7.0 85 31-115 7-91 (256)
13 KOG0125 Ataxin 2-binding prote 99.7 1.1E-16 2.5E-21 110.7 9.6 84 30-115 89-172 (376)
14 PLN03120 nucleic acid binding 99.7 2.3E-16 4.9E-21 107.4 11.0 79 37-119 4-82 (260)
15 KOG0126 Predicted RNA-binding 99.7 3.4E-18 7.4E-23 109.7 0.8 86 35-120 33-118 (219)
16 KOG0149 Predicted RNA-binding 99.7 1.1E-16 2.5E-21 106.3 7.9 82 33-115 8-89 (247)
17 KOG0113 U1 small nuclear ribon 99.7 6.4E-16 1.4E-20 105.8 10.5 85 30-114 94-178 (335)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.1E-15 2.4E-20 114.2 12.6 81 35-115 293-373 (509)
19 TIGR01622 SF-CC1 splicing fact 99.7 1.3E-15 2.8E-20 112.6 12.9 82 34-116 86-167 (457)
20 TIGR01628 PABP-1234 polyadenyl 99.7 7.5E-16 1.6E-20 116.5 10.9 77 39-115 2-78 (562)
21 KOG0130 RNA-binding protein RB 99.7 3.9E-16 8.5E-21 95.9 6.9 79 36-114 71-149 (170)
22 KOG0107 Alternative splicing f 99.7 6.2E-16 1.3E-20 98.7 7.8 76 36-116 9-84 (195)
23 KOG0148 Apoptosis-promoting RN 99.7 1.1E-15 2.4E-20 103.5 9.5 80 34-119 161-240 (321)
24 TIGR01622 SF-CC1 splicing fact 99.7 1.8E-15 3.9E-20 111.8 11.5 80 37-116 186-265 (457)
25 PLN03121 nucleic acid binding 99.7 2.4E-15 5.3E-20 101.1 10.9 80 36-119 4-83 (243)
26 KOG0148 Apoptosis-promoting RN 99.6 7.4E-16 1.6E-20 104.4 7.9 82 37-118 62-143 (321)
27 smart00362 RRM_2 RNA recogniti 99.6 5.4E-15 1.2E-19 82.1 9.6 72 39-112 1-72 (72)
28 PLN03213 repressor of silencin 99.6 2.1E-15 4.5E-20 109.6 9.8 78 34-115 7-86 (759)
29 TIGR01628 PABP-1234 polyadenyl 99.6 2.9E-15 6.3E-20 113.3 10.9 82 35-117 283-364 (562)
30 TIGR01648 hnRNP-R-Q heterogene 99.6 3.3E-15 7.3E-20 112.3 11.0 79 35-114 56-135 (578)
31 smart00360 RRM RNA recognition 99.6 7.2E-15 1.6E-19 81.3 9.0 71 42-112 1-71 (71)
32 KOG0145 RNA-binding protein EL 99.6 5.9E-15 1.3E-19 99.8 9.2 87 33-119 37-123 (360)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 4.7E-14 1E-18 105.1 14.0 79 34-117 272-351 (481)
34 KOG0131 Splicing factor 3b, su 99.6 3.3E-15 7.2E-20 96.0 6.3 81 35-115 7-87 (203)
35 KOG0108 mRNA cleavage and poly 99.6 6E-15 1.3E-19 107.5 8.3 82 38-119 19-100 (435)
36 COG0724 RNA-binding proteins ( 99.6 1.8E-14 3.8E-19 98.6 10.1 79 37-115 115-193 (306)
37 KOG0117 Heterogeneous nuclear 99.6 3.4E-14 7.3E-19 101.9 10.6 80 35-114 81-161 (506)
38 KOG0127 Nucleolar protein fibr 99.6 3.1E-14 6.6E-19 104.4 10.2 83 35-118 115-197 (678)
39 cd00590 RRM RRM (RNA recogniti 99.6 1.2E-13 2.6E-18 77.0 10.2 74 39-113 1-74 (74)
40 KOG0114 Predicted RNA-binding 99.5 1.2E-13 2.6E-18 81.4 9.4 76 36-114 17-92 (124)
41 TIGR01648 hnRNP-R-Q heterogene 99.5 1.2E-13 2.5E-18 104.1 11.1 73 36-116 232-306 (578)
42 KOG0109 RNA-binding protein LA 99.5 2E-14 4.3E-19 98.4 6.3 76 38-121 3-78 (346)
43 KOG0144 RNA-binding protein CU 99.5 1.2E-13 2.6E-18 98.9 9.6 88 29-116 26-116 (510)
44 KOG4212 RNA-binding protein hn 99.5 2.9E-13 6.4E-18 97.2 10.1 80 37-117 44-124 (608)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 3.1E-13 6.7E-18 100.8 10.6 74 37-116 2-77 (481)
46 KOG0124 Polypyrimidine tract-b 99.5 2.5E-14 5.3E-19 100.8 4.4 77 37-113 113-189 (544)
47 KOG0145 RNA-binding protein EL 99.5 5.5E-13 1.2E-17 90.4 10.2 84 33-116 274-357 (360)
48 KOG0111 Cyclophilin-type pepti 99.5 3.3E-14 7.2E-19 94.1 4.0 81 35-115 8-88 (298)
49 PF13893 RRM_5: RNA recognitio 99.5 5.9E-13 1.3E-17 71.5 7.9 56 54-114 1-56 (56)
50 smart00361 RRM_1 RNA recogniti 99.5 6.4E-13 1.4E-17 74.6 8.3 62 51-112 2-70 (70)
51 KOG0105 Alternative splicing f 99.5 2E-13 4.2E-18 88.3 6.5 78 35-115 4-81 (241)
52 KOG0147 Transcriptional coacti 99.5 1.6E-13 3.4E-18 100.5 6.6 83 38-120 279-361 (549)
53 KOG0127 Nucleolar protein fibr 99.4 9.8E-13 2.1E-17 96.6 9.7 79 36-114 291-375 (678)
54 KOG0144 RNA-binding protein CU 99.4 4.6E-13 1E-17 95.9 5.6 83 35-118 122-207 (510)
55 KOG0117 Heterogeneous nuclear 99.4 3.4E-12 7.3E-17 91.8 8.0 74 34-115 256-329 (506)
56 KOG4661 Hsp27-ERE-TATA-binding 99.3 2E-11 4.2E-16 90.6 10.0 82 36-117 404-485 (940)
57 KOG4208 Nucleolar RNA-binding 99.3 1.4E-11 3.1E-16 80.8 8.3 83 35-117 47-130 (214)
58 KOG0131 Splicing factor 3b, su 99.3 6.6E-12 1.4E-16 80.9 6.2 82 36-117 95-177 (203)
59 TIGR01642 U2AF_lg U2 snRNP aux 99.3 4E-11 8.7E-16 89.8 10.5 75 34-115 172-258 (509)
60 KOG0124 Polypyrimidine tract-b 99.3 1.3E-11 2.8E-16 87.3 6.9 80 36-115 209-288 (544)
61 KOG0415 Predicted peptidyl pro 99.3 1.9E-11 4.1E-16 86.1 7.5 81 34-114 236-316 (479)
62 KOG4206 Spliceosomal protein s 99.3 4.2E-11 9.2E-16 79.5 8.0 81 36-119 8-92 (221)
63 KOG0123 Polyadenylate-binding 99.3 4.4E-11 9.5E-16 86.4 8.8 74 40-116 79-152 (369)
64 KOG0146 RNA-binding protein ET 99.2 2.2E-11 4.8E-16 83.0 6.3 83 33-115 281-363 (371)
65 KOG0132 RNA polymerase II C-te 99.2 1.5E-10 3.3E-15 88.1 10.0 75 37-117 421-495 (894)
66 KOG0226 RNA-binding proteins [ 99.2 4.8E-11 1E-15 80.6 5.9 96 19-114 172-267 (290)
67 KOG0153 Predicted RNA-binding 99.2 1.4E-10 3E-15 81.3 8.1 81 30-116 221-302 (377)
68 KOG0109 RNA-binding protein LA 99.2 8E-11 1.7E-15 80.9 6.0 72 36-115 77-148 (346)
69 KOG0533 RRM motif-containing p 99.1 4E-10 8.7E-15 76.7 8.6 80 35-115 81-160 (243)
70 KOG4205 RNA-binding protein mu 99.1 6.7E-11 1.5E-15 83.2 4.9 79 36-115 5-83 (311)
71 KOG0110 RNA-binding protein (R 99.1 7E-11 1.5E-15 89.1 4.8 80 37-116 613-692 (725)
72 KOG0123 Polyadenylate-binding 99.1 4.6E-10 9.9E-15 81.1 8.0 72 39-116 3-74 (369)
73 KOG4205 RNA-binding protein mu 99.1 4.2E-10 9.1E-15 79.3 7.4 83 36-119 96-178 (311)
74 KOG0146 RNA-binding protein ET 99.0 5.5E-10 1.2E-14 76.3 5.7 78 36-114 18-98 (371)
75 KOG0110 RNA-binding protein (R 99.0 1.2E-09 2.7E-14 82.5 8.0 78 38-115 516-596 (725)
76 KOG1548 Transcription elongati 99.0 8.2E-09 1.8E-13 72.6 10.0 80 35-115 132-219 (382)
77 KOG4212 RNA-binding protein hn 99.0 2.2E-09 4.8E-14 77.6 6.8 74 35-113 534-607 (608)
78 KOG4209 Splicing factor RNPS1, 99.0 2.1E-09 4.5E-14 73.1 6.1 82 32-114 96-177 (231)
79 KOG0116 RasGAP SH3 binding pro 99.0 6E-09 1.3E-13 76.1 8.8 78 37-115 288-365 (419)
80 KOG4660 Protein Mei2, essentia 98.9 2.3E-09 4.9E-14 79.2 5.4 72 34-110 72-143 (549)
81 KOG1190 Polypyrimidine tract-b 98.9 2.4E-08 5.1E-13 71.8 9.1 81 37-122 297-378 (492)
82 KOG0106 Alternative splicing f 98.9 3.5E-09 7.5E-14 70.8 4.2 71 38-116 2-72 (216)
83 PF04059 RRM_2: RNA recognitio 98.8 7.6E-08 1.6E-12 57.0 9.4 79 37-115 1-85 (97)
84 KOG0151 Predicted splicing reg 98.8 4.5E-08 9.7E-13 74.5 9.4 83 34-116 171-256 (877)
85 KOG4454 RNA binding protein (R 98.8 2.4E-09 5.2E-14 71.1 2.4 76 36-113 8-83 (267)
86 KOG4211 Splicing factor hnRNP- 98.8 3.3E-08 7.2E-13 72.3 8.3 77 34-114 7-83 (510)
87 KOG1457 RNA binding protein (c 98.8 1.4E-07 3.1E-12 63.1 10.5 80 35-114 32-115 (284)
88 KOG0147 Transcriptional coacti 98.7 7E-09 1.5E-13 76.6 2.9 89 30-119 172-260 (549)
89 KOG4211 Splicing factor hnRNP- 98.6 1.8E-07 3.9E-12 68.5 7.7 79 35-115 101-180 (510)
90 KOG0120 Splicing factor U2AF, 98.6 6.3E-08 1.4E-12 71.9 5.4 81 34-114 286-366 (500)
91 KOG1995 Conserved Zn-finger pr 98.4 5.3E-07 1.2E-11 63.8 5.7 85 34-118 63-155 (351)
92 COG5175 MOT2 Transcriptional r 98.4 1.2E-06 2.6E-11 62.0 7.3 90 37-126 114-221 (480)
93 KOG1457 RNA binding protein (c 98.3 7.7E-07 1.7E-11 59.6 4.3 64 37-104 210-273 (284)
94 KOG0106 Alternative splicing f 98.3 1.7E-06 3.7E-11 58.1 5.0 73 33-113 95-167 (216)
95 KOG4849 mRNA cleavage factor I 98.3 9.8E-07 2.1E-11 62.6 3.7 78 35-112 78-157 (498)
96 PF08777 RRM_3: RNA binding mo 98.2 4.6E-06 1E-10 50.2 5.9 70 38-113 2-76 (105)
97 KOG1365 RNA-binding protein Fu 98.2 6.8E-06 1.5E-10 59.1 6.6 79 35-114 278-359 (508)
98 KOG4307 RNA binding protein RB 98.1 3.5E-05 7.5E-10 59.2 9.8 75 37-112 866-942 (944)
99 KOG4206 Spliceosomal protein s 98.1 2.7E-05 5.9E-10 52.2 8.0 76 34-114 143-219 (221)
100 KOG1456 Heterogeneous nuclear 98.1 0.00019 4E-09 51.8 11.8 79 32-115 282-361 (494)
101 PF11608 Limkain-b1: Limkain b 98.0 5.8E-05 1.3E-09 43.3 6.5 71 38-118 3-78 (90)
102 KOG2314 Translation initiation 98.0 2.8E-05 6.1E-10 58.4 6.6 75 37-112 58-139 (698)
103 KOG4210 Nuclear localization s 97.9 6.6E-06 1.4E-10 57.8 2.6 79 36-115 183-262 (285)
104 KOG0129 Predicted RNA-binding 97.9 7.3E-05 1.6E-09 55.5 7.6 81 33-114 366-451 (520)
105 KOG1548 Transcription elongati 97.9 8.9E-05 1.9E-09 52.7 7.3 79 33-115 261-350 (382)
106 PF14605 Nup35_RRM_2: Nup53/35 97.8 9.1E-05 2E-09 39.0 5.2 52 38-96 2-53 (53)
107 PF05172 Nup35_RRM: Nup53/35/4 97.8 0.00027 5.9E-09 42.1 7.3 77 36-114 5-89 (100)
108 KOG3152 TBP-binding protein, a 97.7 3.1E-05 6.7E-10 52.9 3.4 72 37-108 74-157 (278)
109 KOG1190 Polypyrimidine tract-b 97.7 0.00037 8.1E-09 50.7 8.7 77 34-115 411-489 (492)
110 KOG1365 RNA-binding protein Fu 97.7 3.8E-05 8.3E-10 55.3 3.5 77 36-114 160-240 (508)
111 KOG0105 Alternative splicing f 97.7 0.0011 2.3E-08 43.7 9.5 67 33-106 111-177 (241)
112 KOG0129 Predicted RNA-binding 97.6 0.0003 6.6E-09 52.4 7.3 67 34-101 256-328 (520)
113 KOG0120 Splicing factor U2AF, 97.6 0.0003 6.4E-09 52.8 7.3 63 53-115 425-490 (500)
114 KOG4676 Splicing factor, argin 97.4 0.00045 9.7E-09 50.1 5.4 81 38-119 8-91 (479)
115 KOG1855 Predicted RNA-binding 97.3 0.00034 7.3E-09 51.1 4.3 69 34-102 228-309 (484)
116 PF08952 DUF1866: Domain of un 97.2 0.0038 8.2E-08 39.6 7.1 53 53-114 52-104 (146)
117 KOG1456 Heterogeneous nuclear 97.1 0.0054 1.2E-07 44.5 8.5 77 34-115 117-197 (494)
118 KOG2416 Acinus (induces apopto 97.1 0.00068 1.5E-08 51.5 3.6 77 31-113 438-518 (718)
119 KOG2202 U2 snRNP splicing fact 97.0 0.00039 8.4E-09 47.6 1.8 61 53-114 84-145 (260)
120 KOG4307 RNA binding protein RB 97.0 0.0015 3.2E-08 50.7 4.9 82 34-116 431-513 (944)
121 PF10309 DUF2414: Protein of u 97.0 0.01 2.2E-07 32.2 6.8 54 38-99 6-62 (62)
122 KOG1996 mRNA splicing factor [ 96.9 0.0053 1.1E-07 43.2 6.7 62 51-112 300-362 (378)
123 KOG0112 Large RNA-binding prot 96.9 0.0038 8.2E-08 49.6 6.5 77 33-115 451-529 (975)
124 KOG2193 IGF-II mRNA-binding pr 96.9 0.0013 2.8E-08 48.3 3.5 70 38-114 2-73 (584)
125 PF08675 RNA_bind: RNA binding 96.8 0.0086 1.9E-07 34.4 5.9 56 37-101 9-64 (87)
126 KOG2068 MOT2 transcription fac 96.8 0.00057 1.2E-08 48.5 1.2 76 37-113 77-159 (327)
127 KOG0128 RNA-binding protein SA 96.6 0.00018 4E-09 56.3 -2.2 69 37-105 667-735 (881)
128 KOG2135 Proteins containing th 96.4 0.0031 6.7E-08 46.8 3.1 76 34-116 369-445 (526)
129 KOG0128 RNA-binding protein SA 96.4 0.0015 3.3E-08 51.4 1.2 73 37-110 736-808 (881)
130 PF03467 Smg4_UPF3: Smg-4/UPF3 96.4 0.0079 1.7E-07 39.6 4.4 72 35-106 5-82 (176)
131 PF07576 BRAP2: BRCA1-associat 96.3 0.11 2.3E-06 31.6 9.6 67 38-106 13-81 (110)
132 KOG4285 Mitotic phosphoprotein 96.3 0.097 2.1E-06 37.1 9.4 71 37-115 197-268 (350)
133 KOG0115 RNA-binding protein p5 96.2 0.0081 1.7E-07 41.4 3.8 76 38-114 32-111 (275)
134 PF15023 DUF4523: Protein of u 96.0 0.075 1.6E-06 33.7 7.2 75 34-116 83-161 (166)
135 KOG2591 c-Mpl binding protein, 95.0 0.064 1.4E-06 41.0 5.0 68 37-111 175-246 (684)
136 PF03880 DbpA: DbpA RNA bindin 94.8 0.31 6.8E-06 27.2 6.6 59 47-114 11-74 (74)
137 PF04847 Calcipressin: Calcipr 94.7 0.14 3.1E-06 33.9 5.8 59 50-114 8-68 (184)
138 KOG4660 Protein Mei2, essentia 94.7 0.093 2E-06 39.9 5.3 69 35-103 359-455 (549)
139 KOG0112 Large RNA-binding prot 94.3 0.0093 2E-07 47.5 -0.7 71 36-107 371-441 (975)
140 KOG2253 U1 snRNP complex, subu 94.3 0.09 2E-06 40.8 4.5 71 34-113 37-107 (668)
141 KOG4410 5-formyltetrahydrofola 93.9 0.81 1.8E-05 32.5 8.2 59 35-99 328-394 (396)
142 smart00596 PRE_C2HC PRE_C2HC d 93.8 0.15 3.2E-06 28.2 3.6 66 52-120 2-68 (69)
143 PF11767 SET_assoc: Histone ly 93.0 0.85 1.9E-05 25.0 6.4 55 48-111 11-65 (66)
144 KOG4483 Uncharacterized conser 93.0 0.68 1.5E-05 34.3 6.9 56 36-98 390-446 (528)
145 PF07530 PRE_C2HC: Associated 92.9 0.31 6.6E-06 26.9 4.1 66 52-120 2-68 (68)
146 KOG0804 Cytoplasmic Zn-finger 92.6 1.1 2.3E-05 33.7 7.6 68 37-106 74-142 (493)
147 KOG4210 Nuclear localization s 90.5 0.26 5.6E-06 35.0 2.6 74 36-109 87-160 (285)
148 KOG4574 RNA-binding protein (c 89.2 0.4 8.6E-06 38.6 2.9 68 46-119 307-376 (1007)
149 KOG2193 IGF-II mRNA-binding pr 88.2 0.016 3.4E-07 42.9 -4.9 80 37-120 80-160 (584)
150 KOG4676 Splicing factor, argin 82.7 0.22 4.8E-06 36.6 -1.2 64 37-105 151-214 (479)
151 KOG2891 Surface glycoprotein [ 78.0 2.8 6E-05 29.8 2.9 49 37-85 149-214 (445)
152 PF15513 DUF4651: Domain of un 77.6 8.8 0.00019 20.8 4.1 18 52-69 9-26 (62)
153 PF03468 XS: XS domain; Inter 74.4 15 0.00032 22.5 5.1 56 39-97 10-75 (116)
154 PF07292 NID: Nmi/IFP 35 domai 70.8 12 0.00027 21.7 4.0 24 35-58 50-73 (88)
155 PF02714 DUF221: Domain of unk 70.6 6.1 0.00013 28.2 3.3 36 82-119 1-36 (325)
156 KOG2318 Uncharacterized conser 62.8 57 0.0012 25.8 7.1 75 35-109 172-298 (650)
157 COG0724 RNA-binding proteins ( 60.3 27 0.00058 23.3 4.8 63 33-95 221-283 (306)
158 KOG2295 C2H2 Zn-finger protein 45.3 2.8 6.1E-05 32.5 -2.0 72 37-108 231-302 (648)
159 KOG4365 Uncharacterized conser 43.6 3.7 8E-05 31.0 -1.6 75 39-114 5-79 (572)
160 PF10567 Nab6_mRNP_bdg: RNA-re 43.3 1E+02 0.0022 22.3 5.3 78 37-114 15-105 (309)
161 KOG0226 RNA-binding proteins [ 42.8 20 0.00042 25.3 1.8 76 37-113 96-174 (290)
162 COG5584 Predicted small secret 38.8 83 0.0018 18.7 3.7 31 44-74 29-59 (103)
163 PF03439 Spt5-NGN: Early trans 38.0 50 0.0011 18.7 2.8 26 78-103 43-68 (84)
164 PF13046 DUF3906: Protein of u 37.9 51 0.0011 18.0 2.6 31 50-80 31-61 (64)
165 KOG3702 Nuclear polyadenylated 37.8 44 0.00095 26.8 3.2 76 38-114 512-587 (681)
166 KOG1295 Nonsense-mediated deca 36.4 69 0.0015 23.9 3.9 68 37-104 7-77 (376)
167 PF11823 DUF3343: Protein of u 33.9 68 0.0015 17.5 2.9 27 81-107 3-29 (73)
168 KOG4454 RNA binding protein (R 33.7 8.4 0.00018 26.5 -1.0 67 37-104 80-150 (267)
169 COG5193 LHP1 La protein, small 33.6 21 0.00046 26.7 0.9 60 38-97 175-244 (438)
170 PHA01632 hypothetical protein 33.5 55 0.0012 17.3 2.2 20 40-59 19-38 (64)
171 KOG4008 rRNA processing protei 33.5 43 0.00094 23.3 2.3 33 36-68 39-71 (261)
172 PF11411 DNA_ligase_IV: DNA li 33.5 40 0.00086 16.1 1.6 16 47-62 19-34 (36)
173 COG0030 KsgA Dimethyladenosine 32.9 84 0.0018 22.2 3.7 30 38-67 96-125 (259)
174 KOG0156 Cytochrome P450 CYP2 s 29.8 1.4E+02 0.0031 23.0 4.9 58 42-109 37-97 (489)
175 KOG4840 Predicted hydrolases o 29.6 1.4E+02 0.003 21.1 4.2 83 34-116 34-117 (299)
176 KOG4019 Calcineurin-mediated s 29.5 1.1E+02 0.0025 20.4 3.7 71 38-114 11-87 (193)
177 KOG4213 RNA-binding protein La 28.0 1.9E+02 0.0042 19.4 4.8 48 49-97 118-168 (205)
178 PF12623 Hen1_L: RNA repair, l 27.8 1.8E+02 0.0038 20.4 4.5 62 37-99 118-183 (245)
179 PF14893 PNMA: PNMA 27.6 54 0.0012 24.0 2.2 29 36-64 17-49 (331)
180 COG0150 PurM Phosphoribosylami 26.4 22 0.00048 26.1 0.0 48 51-102 275-322 (345)
181 PF14111 DUF4283: Domain of un 24.9 44 0.00096 20.8 1.2 61 49-115 29-90 (153)
182 PF10281 Ish1: Putative stress 24.8 84 0.0018 14.8 1.9 17 48-64 3-19 (38)
183 PRK10905 cell division protein 24.1 3E+02 0.0065 20.3 7.4 64 35-102 245-309 (328)
184 PF00398 RrnaAD: Ribosomal RNA 24.0 88 0.0019 21.7 2.7 23 37-59 97-119 (262)
185 KOG3424 40S ribosomal protein 23.8 1.9E+02 0.0042 18.0 5.8 45 48-93 34-83 (132)
186 PRK11230 glycolate oxidase sub 23.1 3.6E+02 0.0079 20.9 6.9 50 50-100 202-255 (499)
187 PF15063 TC1: Thyroid cancer p 23.0 72 0.0016 18.0 1.6 28 37-64 25-52 (79)
188 PF09707 Cas_Cas2CT1978: CRISP 22.3 1.7E+02 0.0037 16.9 3.9 47 37-86 25-71 (86)
189 PF15407 Spo7_2_N: Sporulation 22.0 33 0.00072 18.8 0.2 23 36-58 26-48 (67)
190 cd00027 BRCT Breast Cancer Sup 21.3 1.3E+02 0.0028 15.0 3.2 27 38-64 2-28 (72)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=9.4e-21 Score=120.29 Aligned_cols=85 Identities=42% Similarity=0.575 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
....++|||+|||.++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+..||+..++|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccc
Q 033146 114 LARII 118 (126)
Q Consensus 114 ~~~~~ 118 (126)
+....
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 86544
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.81 E-value=1.1e-18 Score=124.83 Aligned_cols=81 Identities=26% Similarity=0.366 Sum_probs=77.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeecc
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALAR 116 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~ 116 (126)
+.+|||+|||.++++++|+++|++||.|.++.+++++.||.++|||||+|.+.++|.+|+..|||..++|+.|+|.++..
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 45799999999999999999999999999999999998999999999999999999999999999999999999999865
Q ss_pred c
Q 033146 117 I 117 (126)
Q Consensus 117 ~ 117 (126)
+
T Consensus 349 ~ 349 (352)
T TIGR01661 349 K 349 (352)
T ss_pred C
Confidence 4
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.79 E-value=2.2e-18 Score=123.42 Aligned_cols=83 Identities=30% Similarity=0.450 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
+.++|||+|||..+++++|+++|+.||+|.++.+++++.+|+++|||||+|.+.++|.+|+..|||..+.|+.|+|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccc
Q 033146 116 RII 118 (126)
Q Consensus 116 ~~~ 118 (126)
...
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 443
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.78 E-value=3.8e-18 Score=121.87 Aligned_cols=84 Identities=24% Similarity=0.394 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
.....++|||+|||.++++++|+++|+.||.|..+++++++.+++++|||||+|.++++|.+|+..|++..+.++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 033146 113 ALAR 116 (126)
Q Consensus 113 ~~~~ 116 (126)
++..
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 8753
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.78 E-value=4.6e-18 Score=95.03 Aligned_cols=70 Identities=39% Similarity=0.609 Sum_probs=66.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 40 v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
|||+|||.++++++|+++|+.||.+..+.+..+ .++..+|+|||+|.+.++|.+|+..++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 5888999999999999999999999999999999875
No 6
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.2e-18 Score=113.13 Aligned_cols=82 Identities=23% Similarity=0.433 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+..+|.|.||+.++++++|.++|..||.|..+.+.+++.||.++|||||.|.+.++|.+||..|||+-.++..|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 033146 115 AR 116 (126)
Q Consensus 115 ~~ 116 (126)
+.
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 74
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.73 E-value=1.1e-16 Score=89.81 Aligned_cols=70 Identities=36% Similarity=0.611 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 40 v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
|+|+|||+++++++|.++|+.+|.|..+.+..++. +..+|+|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999999876 89999999999999999999999999999999875
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=3e-17 Score=99.93 Aligned_cols=83 Identities=24% Similarity=0.247 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
..+++|||+||++.++|++|.++|+..|+|..|.+-.++.+..++|||||+|.+.++|..|+..++|+.++.+.|++.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45789999999999999999999999999999999888888889999999999999999999999999999999999997
Q ss_pred ccc
Q 033146 115 ARI 117 (126)
Q Consensus 115 ~~~ 117 (126)
...
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 544
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.71 E-value=1.6e-16 Score=119.60 Aligned_cols=82 Identities=20% Similarity=0.347 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
..++|||+||+.++++++|+++|+.||.|..+.+.+++.+++.+|||||+|.+.++|.+|+..||+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999999876
Q ss_pred cc
Q 033146 116 RI 117 (126)
Q Consensus 116 ~~ 117 (126)
..
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 43
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=1.6e-16 Score=113.57 Aligned_cols=82 Identities=24% Similarity=0.482 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC--cEEEEee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC--MASFLHA 113 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g--~~l~v~~ 113 (126)
..++|||+|||..+++++|+++|++||.|..+.+++++.+++.+|+|||+|.+.++|.+|++.||+..+.+ +.|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35789999999999999999999999999999999998899999999999999999999999999998866 6888988
Q ss_pred eccc
Q 033146 114 LARI 117 (126)
Q Consensus 114 ~~~~ 117 (126)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 7544
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.71 E-value=1.1e-16 Score=120.45 Aligned_cols=80 Identities=26% Similarity=0.398 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
..++|||+||++++++++|+++|..||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|||..++|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998643
No 12
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.71 E-value=3.8e-17 Score=106.85 Aligned_cols=85 Identities=31% Similarity=0.439 Sum_probs=79.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
++..++.+.|.|.||.+-++.++|...|++||.|-+|.|.+++.|+..+|||||.|.+..+|++|++.|+|..++|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 33445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeeec
Q 033146 111 LHALA 115 (126)
Q Consensus 111 v~~~~ 115 (126)
|+.+.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 99875
No 13
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=110.68 Aligned_cols=84 Identities=27% Similarity=0.387 Sum_probs=74.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 30 ~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
..+......+|+|.|||+...+.||+.+|++||.|.+++|+.+. .-++||+||+|++.++|++|-..|||..++||+|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 34444557889999999999999999999999999999998773 3479999999999999999999999999999999
Q ss_pred EEeeec
Q 033146 110 FLHALA 115 (126)
Q Consensus 110 ~v~~~~ 115 (126)
.|..+.
T Consensus 167 EVn~AT 172 (376)
T KOG0125|consen 167 EVNNAT 172 (376)
T ss_pred EEeccc
Confidence 998773
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.71 E-value=2.3e-16 Score=107.41 Aligned_cols=79 Identities=15% Similarity=0.239 Sum_probs=72.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeecc
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALAR 116 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~ 116 (126)
.++|||+||++.+++++|+++|+.||.|.++.+..++. .+|||||+|.+.+++..||. |+|..+.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999988753 46899999999999999996 999999999999999875
Q ss_pred ccC
Q 033146 117 IIN 119 (126)
Q Consensus 117 ~~~ 119 (126)
...
T Consensus 80 ~~~ 82 (260)
T PLN03120 80 YQL 82 (260)
T ss_pred CCC
Confidence 543
No 15
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=3.4e-18 Score=109.70 Aligned_cols=86 Identities=23% Similarity=0.470 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.++.-|||+|||++.++.+|.-.|++||++..|.+++++.||+++||||++|++..+.--|+..|||..+.||.|+|..+
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccCC
Q 033146 115 ARIINP 120 (126)
Q Consensus 115 ~~~~~~ 120 (126)
.....|
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 666555
No 16
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=1.1e-16 Score=106.27 Aligned_cols=82 Identities=33% Similarity=0.492 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
.+..-++|||++|++++..+.|++.|++||+|.+..++.|+.+|+++||+||+|.+.+.|.+||+ -....|+||+-.+.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccc
Confidence 34456789999999999999999999999999999999999999999999999999999999999 45567899987776
Q ss_pred eec
Q 033146 113 ALA 115 (126)
Q Consensus 113 ~~~ 115 (126)
.+.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 653
No 17
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=6.4e-16 Score=105.79 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=78.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 30 ~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
+....++-++|||+-|+.++++..|+..|+.||+|+.|.|++++.||+++|||||+|.++-++..|.+..+|.+|+|+.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 33445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeee
Q 033146 110 FLHAL 114 (126)
Q Consensus 110 ~v~~~ 114 (126)
.|..-
T Consensus 174 ~VDvE 178 (335)
T KOG0113|consen 174 LVDVE 178 (335)
T ss_pred EEEec
Confidence 88654
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.68 E-value=1.1e-15 Score=114.24 Aligned_cols=81 Identities=17% Similarity=0.405 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
...++|||+|||..+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.+.|..|+..|||..++|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 44679999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred c
Q 033146 115 A 115 (126)
Q Consensus 115 ~ 115 (126)
.
T Consensus 373 ~ 373 (509)
T TIGR01642 373 C 373 (509)
T ss_pred c
Confidence 4
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.68 E-value=1.3e-15 Score=112.57 Aligned_cols=82 Identities=24% Similarity=0.405 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
+.+..+|||+|||..+++++|+++|+.||.|..+.++.++.+++.+|+|||+|.+.++|.+||. |+|..+.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3456789999999999999999999999999999999999999999999999999999999998 999999999999987
Q ss_pred ecc
Q 033146 114 LAR 116 (126)
Q Consensus 114 ~~~ 116 (126)
...
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 643
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.67 E-value=7.5e-16 Score=116.48 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=74.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
.|||+|||.++++++|+++|+.||.|..|.+.++..|++++|||||+|.+.++|.+|+..+|+..+.|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 69999999999999999999999999999999999899999999999999999999999999999999999999975
No 21
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=3.9e-16 Score=95.93 Aligned_cols=79 Identities=29% Similarity=0.547 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+..|||+++...++++++...|..||+|+.+.+..++.||-.+||++|+|.+...|++|+..+||..+.|+.|.|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999999999997
No 22
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=6.2e-16 Score=98.74 Aligned_cols=76 Identities=24% Similarity=0.386 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
..++|||+||+..+++.+|...|..||.+..+++-.+ +.|||||+|++..+|.+|+..|+|..|.|..|+|+...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3789999999999999999999999999999999775 57899999999999999999999999999999999875
Q ss_pred c
Q 033146 116 R 116 (126)
Q Consensus 116 ~ 116 (126)
.
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 4
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.1e-15 Score=103.48 Aligned_cols=80 Identities=25% Similarity=0.371 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..++++|||+|++..++++++++.|+.||.|.+|.+.++ +||+||.|.+.+.|.+||..+|+..++|+.+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 456899999999999999999999999999999999877 57999999999999999999999999999999999
Q ss_pred eccccC
Q 033146 114 LARIIN 119 (126)
Q Consensus 114 ~~~~~~ 119 (126)
-+....
T Consensus 235 GKe~~~ 240 (321)
T KOG0148|consen 235 GKEGDD 240 (321)
T ss_pred cccCCC
Confidence 876554
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.65 E-value=1.8e-15 Score=111.79 Aligned_cols=80 Identities=29% Similarity=0.461 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeecc
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALAR 116 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~ 116 (126)
.++|||+|||..+++++|+++|+.||.|..+.+..+..+|..+|+|||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68899999999999999999999999999999999988899999999999999999999999999999999999999753
No 25
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.65 E-value=2.4e-15 Score=101.08 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
.+.+|+|+||++.+++++|+++|+.||.|.++.+.++.. ..|+|||+|.+.+.+..|+. |+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 457899999999999999999999999999999998843 45799999999999999997 99999999999999876
Q ss_pred cccC
Q 033146 116 RIIN 119 (126)
Q Consensus 116 ~~~~ 119 (126)
....
T Consensus 80 ~y~~ 83 (243)
T PLN03121 80 QYED 83 (243)
T ss_pred cccc
Confidence 5543
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=7.4e-16 Score=104.36 Aligned_cols=82 Identities=34% Similarity=0.517 Sum_probs=78.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeecc
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALAR 116 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~ 116 (126)
...+||+-|..+++-++|++.|..||+|.+.++++|..|++++||+||.|.+.++|+.||..|||..|++|.|+.-|+.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cc
Q 033146 117 II 118 (126)
Q Consensus 117 ~~ 118 (126)
+-
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 54
No 27
>smart00362 RRM_2 RNA recognition motif.
Probab=99.64 E-value=5.4e-15 Score=82.11 Aligned_cols=72 Identities=39% Similarity=0.570 Sum_probs=66.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
+|+|+|||..+++++|+++|..||.+..+.+..++ +..+|+|||+|.+.+.|.+|+..+++..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999988775 6788999999999999999999999999999988764
No 28
>PLN03213 repressor of silencing 3; Provisional
Probab=99.64 E-value=2.1e-15 Score=109.62 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCceecCcEEEE
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATL--EAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~al~~l~g~~~~g~~l~v 111 (126)
.....+||||||++.+++++|+..|..||.|..+.|++. +| +|||||+|.+. .++.+|+..|||..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 344678999999999999999999999999999999944 66 99999999976 7899999999999999999999
Q ss_pred eeec
Q 033146 112 HALA 115 (126)
Q Consensus 112 ~~~~ 115 (126)
..++
T Consensus 83 NKAK 86 (759)
T PLN03213 83 EKAK 86 (759)
T ss_pred eecc
Confidence 9875
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.63 E-value=2.9e-15 Score=113.31 Aligned_cols=82 Identities=35% Similarity=0.581 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
....+|||+||+.++++++|+++|+.||.|..++++.+ .+|.++|+|||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34678999999999999999999999999999999998 68999999999999999999999999999999999999998
Q ss_pred ccc
Q 033146 115 ARI 117 (126)
Q Consensus 115 ~~~ 117 (126)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 654
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.63 E-value=3.3e-15 Score=112.27 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcEEEEee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL-CMASFLHA 113 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~-g~~l~v~~ 113 (126)
...++|||+|||.++++++|+++|+.+|.|.++.++++ .+|+++|||||+|.+.++|++|++.||+..+. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999999999999999999999999999999 79999999999999999999999999999874 77776655
Q ss_pred e
Q 033146 114 L 114 (126)
Q Consensus 114 ~ 114 (126)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 4
No 31
>smart00360 RRM RNA recognition motif.
Probab=99.62 E-value=7.2e-15 Score=81.28 Aligned_cols=71 Identities=35% Similarity=0.598 Sum_probs=66.3
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 42 VSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 42 v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
|+|||..+++++|+.+|+.||.+..+.+..++.++..+|+|||+|.+.+.|..|+..+++..++|+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999998887788999999999999999999999999999999998874
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=5.9e-15 Score=99.79 Aligned_cols=87 Identities=30% Similarity=0.435 Sum_probs=81.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
.++..+.+.|.-||..+++++++.+|...|+|+.+++++|+-+|.+.||+||.|.++.+|.+|+..|||..+..+.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccC
Q 033146 113 ALARIIN 119 (126)
Q Consensus 113 ~~~~~~~ 119 (126)
.+..+++
T Consensus 117 yARPSs~ 123 (360)
T KOG0145|consen 117 YARPSSD 123 (360)
T ss_pred eccCChh
Confidence 9876554
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.60 E-value=4.7e-14 Score=105.11 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 34 AEPSTNLFVSGLSK-RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 34 ~~~~~~v~v~nlp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
..+.++|||+||+. .+++++|+.+|+.||.|..++++.++ +|+|||+|.+.++|..|+..|||..+.|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998763 6899999999999999999999999999999999
Q ss_pred eeccc
Q 033146 113 ALARI 117 (126)
Q Consensus 113 ~~~~~ 117 (126)
.++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 87543
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.59 E-value=3.3e-15 Score=95.97 Aligned_cols=81 Identities=25% Similarity=0.356 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
....+|||+||+..++++.|.++|-+.|+|..+.+++++.+...+||||++|.++++|+-|++.||..++.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 033146 115 A 115 (126)
Q Consensus 115 ~ 115 (126)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 35
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.59 E-value=6e-15 Score=107.46 Aligned_cols=82 Identities=28% Similarity=0.450 Sum_probs=78.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeeccc
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARI 117 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~~ 117 (126)
+.|||+|+|+++++++|..+|+..|.|..++++.|+.||+.+||+|++|.+.+.+..|++.|||..+.|++|+|.+....
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred cC
Q 033146 118 IN 119 (126)
Q Consensus 118 ~~ 119 (126)
.+
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 36
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=1.8e-14 Score=98.57 Aligned_cols=79 Identities=37% Similarity=0.592 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
.++|||+|||.++++++|.++|..||.+..+.+..++.++..+|+|||+|.+.+++..|+..++|..+.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6899999999999999999999999999999999998899999999999999999999999999999999999999964
No 37
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=3.4e-14 Score=101.91 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-cCcEEEEee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVS-LCMASFLHA 113 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~-~g~~l~v~~ 113 (126)
..++-|||+.||.++.+++|.-+|++.|+|-++.|+.++.+|.++|||||.|.+.+.|++|++.||++.| .|+.|.|.-
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999965 788887765
Q ss_pred e
Q 033146 114 L 114 (126)
Q Consensus 114 ~ 114 (126)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 4
No 38
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=3.1e-14 Score=104.38 Aligned_cols=83 Identities=25% Similarity=0.352 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+..+|.|.|||+.+..++|+.+|+.||.|.++.|++.+. |+-+|||||.|....+|..|++.+|++.++|++|-|.|+
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 3467899999999999999999999999999999998764 555699999999999999999999999999999999998
Q ss_pred cccc
Q 033146 115 ARII 118 (126)
Q Consensus 115 ~~~~ 118 (126)
..+.
T Consensus 194 V~Kd 197 (678)
T KOG0127|consen 194 VDKD 197 (678)
T ss_pred cccc
Confidence 6443
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.56 E-value=1.2e-13 Score=76.98 Aligned_cols=74 Identities=38% Similarity=0.584 Sum_probs=67.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
+|+|+|||..+++++|+.+|+.+|.+..+.+..++.+ ..+|+|||+|.+.+.|..|+..+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4789999999999999999999999999999887644 6789999999999999999999999999999998764
No 40
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.2e-13 Score=81.39 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=67.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
-...+||.|||++++.++..++|..||.|..+.+-.. ...+|-|||.|++..+|.+|+.+|+|..++++.+.|-..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 4678999999999999999999999999999888443 446899999999999999999999999999999887543
No 41
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=1.2e-13 Score=104.06 Aligned_cols=73 Identities=27% Similarity=0.406 Sum_probs=67.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAF--GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
...+|||+||+.++++++|+++|+.| |.|..+.++ ++||||+|.+.++|.+|++.||+..++|+.|+|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 999998764 34999999999999999999999999999999999
Q ss_pred ecc
Q 033146 114 LAR 116 (126)
Q Consensus 114 ~~~ 116 (126)
++.
T Consensus 304 Akp 306 (578)
T TIGR01648 304 AKP 306 (578)
T ss_pred ccC
Confidence 853
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.53 E-value=2e-14 Score=98.35 Aligned_cols=76 Identities=28% Similarity=0.451 Sum_probs=70.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeeccc
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARI 117 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~~ 117 (126)
.++||+|||..+++.+|+.+|++||.|.+|.++++ |+||..++...+..++.+|||..++|..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46899999999999999999999999999999887 8999999999999999999999999999999999877
Q ss_pred cCCC
Q 033146 118 INPF 121 (126)
Q Consensus 118 ~~~~ 121 (126)
+.+.
T Consensus 75 sk~s 78 (346)
T KOG0109|consen 75 SKAS 78 (346)
T ss_pred CCCc
Confidence 5543
No 43
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1.2e-13 Score=98.86 Aligned_cols=88 Identities=25% Similarity=0.433 Sum_probs=76.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-eecCc
Q 033146 29 PQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK-VSLCM 107 (126)
Q Consensus 29 ~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~-~~~g~ 107 (126)
.....+.+.-++||+.+|..++|.+|+++|++||.|.+|.+++|+.|+..+|+|||.|.+.++|.+|+..||+. .+.|.
T Consensus 26 ~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 26 HTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred CCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 34445566789999999999999999999999999999999999999999999999999999999999999987 34443
Q ss_pred --EEEEeeecc
Q 033146 108 --ASFLHALAR 116 (126)
Q Consensus 108 --~l~v~~~~~ 116 (126)
.|.|+.+..
T Consensus 106 ~~pvqvk~Ad~ 116 (510)
T KOG0144|consen 106 HHPVQVKYADG 116 (510)
T ss_pred Ccceeecccch
Confidence 677777643
No 44
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.50 E-value=2.9e-13 Score=97.22 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHh-hccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 37 STNLFVSGLSKRTTDETLRDTF-SAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f-~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
.+.+||+|||+++.+.+|+++| ++-|+|.++.++.| .+|+++|+|.|+|++++.+++|++.||.+.+.|+.|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 4559999999999999999999 46789999999999 589999999999999999999999999999999999999876
Q ss_pred cc
Q 033146 116 RI 117 (126)
Q Consensus 116 ~~ 117 (126)
+.
T Consensus 123 d~ 124 (608)
T KOG4212|consen 123 DE 124 (608)
T ss_pred ch
Confidence 53
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.49 E-value=3.1e-13 Score=100.75 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=67.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceecCcEEEEeee
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM--DGKVSLCMASFLHAL 114 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l--~g~~~~g~~l~v~~~ 114 (126)
++.|||+|||.++++++|+++|+.||.|..+.++.+ +|+|||+|.+.++|.+|+..+ ++..++|+.|+|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 578999999999999999999999999999988753 469999999999999999864 778999999999998
Q ss_pred cc
Q 033146 115 AR 116 (126)
Q Consensus 115 ~~ 116 (126)
..
T Consensus 76 ~~ 77 (481)
T TIGR01649 76 TS 77 (481)
T ss_pred CC
Confidence 54
No 46
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=2.5e-14 Score=100.81 Aligned_cols=77 Identities=27% Similarity=0.430 Sum_probs=74.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
-++|||+.+.+++.++.|+..|..||+|+.+.+.+|+.|++.+||+||+|+-.+.|+-|++.|||..++||.|+|-.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999998863
No 47
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=5.5e-13 Score=90.36 Aligned_cols=84 Identities=24% Similarity=0.336 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
....+.+|||-||.++.++..|..+|..||.|..+++++|..|.+++||+||.+.+-++|.-|+..|||..++++.|.|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eecc
Q 033146 113 ALAR 116 (126)
Q Consensus 113 ~~~~ 116 (126)
....
T Consensus 354 FKtn 357 (360)
T KOG0145|consen 354 FKTN 357 (360)
T ss_pred EecC
Confidence 7653
No 48
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.3e-14 Score=94.09 Aligned_cols=81 Identities=27% Similarity=0.466 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
...++|||++|..++++..|...|-.||+|..|.++.+..+++.+||+||+|...++|..|+..||+..+.|+.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 033146 115 A 115 (126)
Q Consensus 115 ~ 115 (126)
+
T Consensus 88 k 88 (298)
T KOG0111|consen 88 K 88 (298)
T ss_pred C
Confidence 4
No 49
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.47 E-value=5.9e-13 Score=71.47 Aligned_cols=56 Identities=39% Similarity=0.567 Sum_probs=50.2
Q ss_pred HHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 54 LRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 54 l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
|.++|++||.|..+.+..+. +++|||+|.+.++|..|+..|||..+.|+.|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987653 579999999999999999999999999999999885
No 50
>smart00361 RRM_1 RNA recognition motif.
Probab=99.47 E-value=6.4e-13 Score=74.56 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=54.1
Q ss_pred HHHHHHHhh----ccCCeeEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 51 DETLRDTFS----AFGEVVHAK-IVKHRES--GYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 51 ~~~l~~~f~----~~G~v~~~~-~~~~~~~--~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
+++|+++|. .||.|..+. +..++.+ +..+|++||.|.+.++|.+|+..|||..++|+.|.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 467788888 999999885 6666556 8899999999999999999999999999999998763
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2e-13 Score=88.31 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
...++|||+|||.++.+.+|+++|.+||.|.+|.|...+ ....||||+|++..+|..|+..-+|..++|..|+|+..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 346889999999999999999999999999999985443 24669999999999999999999999999999999986
Q ss_pred c
Q 033146 115 A 115 (126)
Q Consensus 115 ~ 115 (126)
.
T Consensus 81 r 81 (241)
T KOG0105|consen 81 R 81 (241)
T ss_pred c
Confidence 4
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.46 E-value=1.6e-13 Score=100.51 Aligned_cols=83 Identities=29% Similarity=0.512 Sum_probs=77.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeeccc
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARI 117 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~~ 117 (126)
..++|+||.+.+++++|+.+|+.||.|..+.+..+..||.++||+|++|.+.+.|++|+++|||+.+-|+.|+|..+...
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 34899999999999999999999999999999999889999999999999999999999999999999999999887655
Q ss_pred cCC
Q 033146 118 INP 120 (126)
Q Consensus 118 ~~~ 120 (126)
..+
T Consensus 359 ~~~ 361 (549)
T KOG0147|consen 359 VDT 361 (549)
T ss_pred ccc
Confidence 544
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=9.8e-13 Score=96.64 Aligned_cols=79 Identities=39% Similarity=0.488 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-----CC-ceecCcEE
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-----DG-KVSLCMAS 109 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-----~g-~~~~g~~l 109 (126)
-..+|||.|||+++++++|...|++||.|....++.++.|+.++|.|||.|.+...++.||... .| ..++|+.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 3589999999999999999999999999999999999999999999999999999999999965 23 68999999
Q ss_pred EEeee
Q 033146 110 FLHAL 114 (126)
Q Consensus 110 ~v~~~ 114 (126)
+|..+
T Consensus 371 kv~~A 375 (678)
T KOG0127|consen 371 KVTLA 375 (678)
T ss_pred eeeec
Confidence 99776
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=4.6e-13 Score=95.88 Aligned_cols=83 Identities=30% Similarity=0.459 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-ee--cCcEEEE
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK-VS--LCMASFL 111 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~-~~--~g~~l~v 111 (126)
...++|||+.|+..++|.+++++|.+||.|+++.++++. .+.++|++||.|++.+.|..|++.|||. .. ...+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 346889999999999999999999999999999999995 7899999999999999999999999998 33 4458999
Q ss_pred eeecccc
Q 033146 112 HALARII 118 (126)
Q Consensus 112 ~~~~~~~ 118 (126)
+++.-++
T Consensus 201 kFADtqk 207 (510)
T KOG0144|consen 201 KFADTQK 207 (510)
T ss_pred EecccCC
Confidence 9985444
No 55
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=3.4e-12 Score=91.81 Aligned_cols=74 Identities=30% Similarity=0.385 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
......|||.||+.++|++.|++.|+.||.|.+++-++| ||||.|.+.++|.+|++.+||..++|..|.|.-
T Consensus 256 ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 256 MSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred hhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 344678999999999999999999999999999988766 999999999999999999999999999999987
Q ss_pred ec
Q 033146 114 LA 115 (126)
Q Consensus 114 ~~ 115 (126)
++
T Consensus 328 AK 329 (506)
T KOG0117|consen 328 AK 329 (506)
T ss_pred cC
Confidence 74
No 56
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.32 E-value=2e-11 Score=90.59 Aligned_cols=82 Identities=32% Similarity=0.390 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
-.+++||.+|...+...+|+.+|++||.|...+++.+-.+.-.+.|+||++.+..+|.+||.+||.+.++|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 36789999999999999999999999999999999887777778899999999999999999999999999999999886
Q ss_pred cc
Q 033146 116 RI 117 (126)
Q Consensus 116 ~~ 117 (126)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 53
No 57
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.32 E-value=1.4e-11 Score=80.75 Aligned_cols=83 Identities=22% Similarity=0.359 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAF-GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~-G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
....-+++..+|..+.+.++...|.++ |.+..+.+.+++.||.++|||||+|++.+.|.-|-+.||+..+.++.|.+..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345568899999999999999999888 6788899999999999999999999999999999999999999999999987
Q ss_pred eccc
Q 033146 114 LARI 117 (126)
Q Consensus 114 ~~~~ 117 (126)
++..
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7543
No 58
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.31 E-value=6.6e-12 Score=80.91 Aligned_cols=82 Identities=35% Similarity=0.581 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++||+||.+++++..|.+.|+.||.+. .-++++++.||.++|++|+.|.+.+.+.+|++.+||..+.++++.|+.+
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 357899999999999999999999999875 4588899999999999999999999999999999999999999999887
Q ss_pred ccc
Q 033146 115 ARI 117 (126)
Q Consensus 115 ~~~ 117 (126)
.++
T Consensus 175 ~k~ 177 (203)
T KOG0131|consen 175 FKK 177 (203)
T ss_pred Eec
Confidence 543
No 59
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.29 E-value=4e-11 Score=89.81 Aligned_cols=75 Identities=21% Similarity=0.353 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc------------CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAF------------GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~------------G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g 101 (126)
....++|||+|||..+++++|.++|..+ +.|..+.+ +..+|||||+|.+.++|..||. |+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 4457899999999999999999999875 12333333 3457899999999999999996 999
Q ss_pred ceecCcEEEEeeec
Q 033146 102 KVSLCMASFLHALA 115 (126)
Q Consensus 102 ~~~~g~~l~v~~~~ 115 (126)
..+.|+.|+|....
T Consensus 245 ~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 245 IIYSNVFLKIRRPH 258 (509)
T ss_pred eEeeCceeEecCcc
Confidence 99999999997654
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.3e-11 Score=87.32 Aligned_cols=80 Identities=20% Similarity=0.368 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
.-.+|||..+.++.++++|+..|+-||+|..|.+-+.+.++..+||+|++|.+......|+..||-+.++|+.|+|-.+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 35789999999999999999999999999999999999888999999999999999999999999999999999997764
No 61
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.9e-11 Score=86.07 Aligned_cols=81 Identities=28% Similarity=0.422 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
.++...|||..|.+-++.++|.-+|+.||.|..+.++++..||.+..||||+|.+.+++.+|.-.|.+..|+.+.|+|..
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred e
Q 033146 114 L 114 (126)
Q Consensus 114 ~ 114 (126)
+
T Consensus 316 S 316 (479)
T KOG0415|consen 316 S 316 (479)
T ss_pred h
Confidence 4
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.25 E-value=4.2e-11 Score=79.51 Aligned_cols=81 Identities=20% Similarity=0.364 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 36 PSTNLFVSGLSKRTTDETLRD----TFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~----~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
+..+|||.||+..+..++|+. +|++||.|..|... .+.+-+|-|||.|.+.+.|-.|+..|+|..+-|+.+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999998887 99999999988765 35678999999999999999999999999999999999
Q ss_pred eeeccccC
Q 033146 112 HALARIIN 119 (126)
Q Consensus 112 ~~~~~~~~ 119 (126)
..+...++
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99876664
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=4.4e-11 Score=86.36 Aligned_cols=74 Identities=32% Similarity=0.624 Sum_probs=69.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeecc
Q 033146 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALAR 116 (126)
Q Consensus 40 v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~ 116 (126)
|||.||+++++..+|.++|+.||.|..|++..+. .| .+|+ ||+|.+++.|++|+..+||..+.+++|.|-....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 9999999999999999999999999999999985 45 8999 9999999999999999999999999999966543
No 64
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.2e-11 Score=82.96 Aligned_cols=83 Identities=29% Similarity=0.392 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...++|+|||-.||.+..+.+|..+|-.||-|...++..|+.|..++.|+||.|.+..+++.||..|||+.|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 35678999999999999999999999999999999988899999999999999999999999999999999999999987
Q ss_pred eec
Q 033146 113 ALA 115 (126)
Q Consensus 113 ~~~ 115 (126)
...
T Consensus 361 LKR 363 (371)
T KOG0146|consen 361 LKR 363 (371)
T ss_pred hcC
Confidence 654
No 65
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.21 E-value=1.5e-10 Score=88.13 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeecc
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALAR 116 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~ 116 (126)
+++|||++|+..+++.+|..+|+.||+|..|.+.. .+|+|||.+...++|.+|+.+|+...+.++.|++.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 57899999999999999999999999999998864 367999999999999999999999999999999999864
Q ss_pred c
Q 033146 117 I 117 (126)
Q Consensus 117 ~ 117 (126)
+
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 4
No 66
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.19 E-value=4.8e-11 Score=80.58 Aligned_cols=96 Identities=24% Similarity=0.365 Sum_probs=87.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 033146 19 TSPFSSSLNPPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98 (126)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 98 (126)
.+....+..+...+++.+..+||++.|..+++.+.|-..|.+|-....-++++++.||+++||+||.|.+..++..|+..
T Consensus 172 ~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 172 LAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred eccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHh
Confidence 34556677788888899999999999999999999999999999888889999999999999999999999999999999
Q ss_pred hCCceecCcEEEEeee
Q 033146 99 MDGKVSLCMASFLHAL 114 (126)
Q Consensus 99 l~g~~~~g~~l~v~~~ 114 (126)
|+|..++.+.|++...
T Consensus 252 m~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 252 MNGKYVGSRPIKLRKS 267 (290)
T ss_pred hcccccccchhHhhhh
Confidence 9999999999877554
No 67
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=1.4e-10 Score=81.30 Aligned_cols=81 Identities=27% Similarity=0.441 Sum_probs=69.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HhCCceecCcE
Q 033146 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE-GMDGKVSLCMA 108 (126)
Q Consensus 30 ~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~-~l~g~~~~g~~ 108 (126)
.++.+....+|||++|...+++.+|+.+|.+||+|..+.++.. ++.|||+|.+.+.|+.|.+ .++...++|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 3445566789999999999999999999999999999988654 3489999999999998887 46666899999
Q ss_pred EEEeeecc
Q 033146 109 SFLHALAR 116 (126)
Q Consensus 109 l~v~~~~~ 116 (126)
|+|.|...
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999865
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.16 E-value=8e-11 Score=80.92 Aligned_cols=72 Identities=31% Similarity=0.477 Sum_probs=67.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
..++++|+|+.+.++..+|+..|++||+|.+++++++ ++||.|.-.++|..|+..|++..++|+.++|+.+.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 4678999999999999999999999999999999877 89999999999999999999999999999998875
No 69
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.14 E-value=4e-10 Score=76.69 Aligned_cols=80 Identities=24% Similarity=0.319 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
...++|+|.|||..+.+++|+++|+.||.++.+.+..++ +|.+.|.|-|.|...++|..+++.+||..++|+.+++..+
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 345789999999999999999999999988888888885 8999999999999999999999999999999999988876
Q ss_pred c
Q 033146 115 A 115 (126)
Q Consensus 115 ~ 115 (126)
.
T Consensus 160 ~ 160 (243)
T KOG0533|consen 160 S 160 (243)
T ss_pred c
Confidence 4
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.14 E-value=6.7e-11 Score=83.24 Aligned_cols=79 Identities=34% Similarity=0.511 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
+.+++||++|+++++++.|++.|.+||+|.++.+++++.+++.+||+||+|++.+...+++. ...+.++|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57899999999999999999999999999999999999999999999999999888888887 56678999999888874
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=7e-11 Score=89.05 Aligned_cols=80 Identities=24% Similarity=0.400 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeecc
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALAR 116 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~ 116 (126)
.+.|+|.|+|+..+-.+++++|..||.+..+.++.....+.++|||||+|-+..+|..|+.+|..+.+.|+.|.++|++.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 67899999999999999999999999999999987766677899999999999999999999999999999999999864
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=4.6e-10 Score=81.15 Aligned_cols=72 Identities=24% Similarity=0.365 Sum_probs=67.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeecc
Q 033146 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALAR 116 (126)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~ 116 (126)
.+||+ +++++..|.+.|+.+|++..+.+.++. | +.|||||.|.+..+|.+||..+|...+.|+++++.|+.+
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 47888 889999999999999999999999997 6 999999999999999999999999999999999999853
No 73
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.10 E-value=4.2e-10 Score=79.25 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
....|||++||.++++.++++.|++||.|..+.++.+..+.+.+||+||.|.+++.+.+++. ...+.+.++.+.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35589999999999999999999999999999999999999999999999999999999988 78899999999999985
Q ss_pred cccC
Q 033146 116 RIIN 119 (126)
Q Consensus 116 ~~~~ 119 (126)
.+..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 4443
No 74
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=5.5e-10 Score=76.26 Aligned_cols=78 Identities=26% Similarity=0.460 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-ecC--cEEEEe
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV-SLC--MASFLH 112 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~-~~g--~~l~v~ 112 (126)
+.+++||+.|...-.|++++.+|..||.+.++.+.+.. .|.++|++||.|.+..+|+.||..|||.. ..| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 57889999999999999999999999999999998875 78899999999999999999999999973 233 356666
Q ss_pred ee
Q 033146 113 AL 114 (126)
Q Consensus 113 ~~ 114 (126)
.+
T Consensus 97 ~A 98 (371)
T KOG0146|consen 97 FA 98 (371)
T ss_pred ec
Confidence 55
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=1.2e-09 Score=82.52 Aligned_cols=78 Identities=37% Similarity=0.485 Sum_probs=68.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESG---YSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
+.+||.||+++.+.+++...|...|.|..+.|...+... .+.|||||+|.+.++|++|+..|+|+.++|+.|.|+.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999988886654221 23499999999999999999999999999999999887
Q ss_pred c
Q 033146 115 A 115 (126)
Q Consensus 115 ~ 115 (126)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 6
No 76
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.98 E-value=8.2e-09 Score=72.59 Aligned_cols=80 Identities=21% Similarity=0.252 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVV--------HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC 106 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g 106 (126)
.-++.|||.|||.++|-+++.++|+.+|.|. .|+|-++. .|..+|=|+++|...+++.-|+..|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3467799999999999999999999999773 36777774 59999999999999999999999999999999
Q ss_pred cEEEEeeec
Q 033146 107 MASFLHALA 115 (126)
Q Consensus 107 ~~l~v~~~~ 115 (126)
+.|+|+.++
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999999885
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.96 E-value=2.2e-09 Score=77.63 Aligned_cols=74 Identities=28% Similarity=0.335 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
...++|+|.|||.++|+..|++-|..+|.|.+..++ ..|+.+| .|.|.++++|+.||..|+|..++|+.|+|..
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 446889999999999999999999999999988884 3566666 8999999999999999999999999999863
No 78
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.95 E-value=2.1e-09 Score=73.11 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
....+...+||+|+.+.++.++++..|+.+|.+..+.++.++.++.++|++||+|.+.+.+..++. |+|..+.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 345667889999999999999999999999999999999998888899999999999999999999 9999999999998
Q ss_pred eee
Q 033146 112 HAL 114 (126)
Q Consensus 112 ~~~ 114 (126)
.+.
T Consensus 175 t~~ 177 (231)
T KOG4209|consen 175 TLK 177 (231)
T ss_pred eee
Confidence 876
No 79
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.95 E-value=6e-09 Score=76.08 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
...|||.|||.+++.++|+++|..||.|++..|......++...|+||+|.+.+.++.+|. -+-..++++++.|+..+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecc
Confidence 4559999999999999999999999999988776543234444899999999999999999 56778999999999864
No 80
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=2.3e-09 Score=79.21 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=64.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
+.+..+|+|.|||..++.++|..+|+.||+|+++.. |...+|++||+|.|..+|++|++.|++..+.|+.++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 455678999999999999999999999999998654 444688999999999999999999999999999887
No 81
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.87 E-value=2.4e-08 Score=71.76 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 37 STNLFVSGLSKR-TTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 37 ~~~v~v~nlp~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
+..|.|.||..+ ++.+.|..+|+.||+|.++++..++. -.|+|+|.+...|+-|+++|+|+.+.|++|+|..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 567888888665 89999999999999999999998853 379999999999999999999999999999999988
Q ss_pred cccCCCC
Q 033146 116 RIINPFP 122 (126)
Q Consensus 116 ~~~~~~~ 122 (126)
+..-+.|
T Consensus 372 H~~vqlp 378 (492)
T KOG1190|consen 372 HTNVQLP 378 (492)
T ss_pred CccccCC
Confidence 7665544
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=3.5e-09 Score=70.84 Aligned_cols=71 Identities=21% Similarity=0.443 Sum_probs=64.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeecc
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALAR 116 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~ 116 (126)
..+||++||+.+.+.++..+|..||.+.++.+. .||+||+|.+..+|..|+.-+|+..+.|..+.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 468999999999999999999999999988873 45889999999999999999999999999988888864
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.85 E-value=7.6e-08 Score=56.98 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=65.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc--cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec----CcEEE
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSA--FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL----CMASF 110 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~--~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~----g~~l~ 110 (126)
.++|.|.|+|...+.++|.+.+.. .|..-.+-++-|..++.+.|||||.|.+.+.+.+-...++|..+. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 378999999999999999988854 356677778888888899999999999999999999999998764 33445
Q ss_pred Eeeec
Q 033146 111 LHALA 115 (126)
Q Consensus 111 v~~~~ 115 (126)
+.++.
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 55553
No 84
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.81 E-value=4.5e-08 Score=74.47 Aligned_cols=83 Identities=24% Similarity=0.353 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRE---SGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
+...+++||+||++.+++..|-..|..||++..+++++.+. ....+-++||.|-+..++++|+..|+|..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 44578999999999999999999999999999988876542 234456889999999999999999999999999999
Q ss_pred Eeeecc
Q 033146 111 LHALAR 116 (126)
Q Consensus 111 v~~~~~ 116 (126)
+-|.+.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999853
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=2.4e-09 Score=71.15 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=68.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
-..+|+|+|+...++++.|.++|-+-|+|.++.|...+ .++.+ ||||.|.++....-|+..+||..+.++.+.++.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 46789999999999999999999999999999998775 45555 999999999999999999999999999887765
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.80 E-value=3.3e-08 Score=72.31 Aligned_cols=77 Identities=18% Similarity=0.243 Sum_probs=65.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
......|.+.+||+++|+++|..||+.+ .|..+.+.+ .+|+..|.|||+|.+++++.+|++ .+...+..+.|.|..
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 3446678899999999999999999987 456655554 479999999999999999999999 788888899998877
Q ss_pred e
Q 033146 114 L 114 (126)
Q Consensus 114 ~ 114 (126)
+
T Consensus 83 ~ 83 (510)
T KOG4211|consen 83 A 83 (510)
T ss_pred c
Confidence 6
No 87
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.80 E-value=1.4e-07 Score=63.07 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCceec---CcEEE
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHR-ESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL---CMASF 110 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~---g~~l~ 110 (126)
...+++||.+||.++-..+|.-+|..|...+...+.... .....+-++|+.|.+.+.|.+|+..|||..++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 347899999999999999999999998777665554322 22234579999999999999999999999775 44677
Q ss_pred Eeee
Q 033146 111 LHAL 114 (126)
Q Consensus 111 v~~~ 114 (126)
++-+
T Consensus 112 iElA 115 (284)
T KOG1457|consen 112 IELA 115 (284)
T ss_pred eeeh
Confidence 7765
No 88
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.73 E-value=7e-09 Score=76.58 Aligned_cols=89 Identities=24% Similarity=0.394 Sum_probs=79.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 30 ~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
...++.+..++|+..+....++.+|.++|+..|.|..+.++.++.++.++|.+||+|.+.+....|+. |.|..+.|.+|
T Consensus 172 l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv 250 (549)
T KOG0147|consen 172 LSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPV 250 (549)
T ss_pred CCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCcee
Confidence 34445667889999999999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred EEeeeccccC
Q 033146 110 FLHALARIIN 119 (126)
Q Consensus 110 ~v~~~~~~~~ 119 (126)
.|+.....+|
T Consensus 251 ~vq~sEaekn 260 (549)
T KOG0147|consen 251 IVQLSEAEKN 260 (549)
T ss_pred EecccHHHHH
Confidence 9987644443
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.63 E-value=1.8e-07 Score=68.55 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH-AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
.....|.+.+||+.+++++|.+||+..-.+.. +.++.+ ..+++.|.|||+|++.+.+++|+. .|...++.+-|.|.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeeh
Confidence 45678999999999999999999998765544 555555 467799999999999999999998 688889999999887
Q ss_pred ec
Q 033146 114 LA 115 (126)
Q Consensus 114 ~~ 115 (126)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 63
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=6.3e-08 Score=71.85 Aligned_cols=81 Identities=25% Similarity=0.481 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
......++|++||..+++.++.+.+..||++....++.+..+|.++||||.+|.+......|+..|||..++++.|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999888
Q ss_pred e
Q 033146 114 L 114 (126)
Q Consensus 114 ~ 114 (126)
+
T Consensus 366 A 366 (500)
T KOG0120|consen 366 A 366 (500)
T ss_pred h
Confidence 6
No 91
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.44 E-value=5.3e-07 Score=63.85 Aligned_cols=85 Identities=26% Similarity=0.257 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV--------HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL 105 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~ 105 (126)
.....+|||.+||..+++.+|.++|.++|.|. .+++-+++.|++.+|-|.|.|.+...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567899999999999999999999999774 3566778889999999999999999999999999999999
Q ss_pred CcEEEEeeecccc
Q 033146 106 CMASFLHALARII 118 (126)
Q Consensus 106 g~~l~v~~~~~~~ 118 (126)
+..|+|..+....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998886554
No 92
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.43 E-value=1.2e-06 Score=61.95 Aligned_cols=90 Identities=21% Similarity=0.355 Sum_probs=68.6
Q ss_pred CCeEEEcCCCCCCCHHH----H--HHHhhccCCeeEEEEeecCCC-CCcceE--EEEEeCCHHHHHHHHHHhCCceecCc
Q 033146 37 STNLFVSGLSKRTTDET----L--RDTFSAFGEVVHAKIVKHRES-GYSKGF--GFVKYATLEAAGKAIEGMDGKVSLCM 107 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~----l--~~~f~~~G~v~~~~~~~~~~~-~~~~g~--~fv~f~~~~~a~~al~~l~g~~~~g~ 107 (126)
..-+||-+|++.+..++ | .++|.+||.|..|.+.+.-.+ ....++ .||+|.+.++|.+||....|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45688889998876554 2 578999999999887654211 111233 49999999999999999999999999
Q ss_pred EEEEeee---------ccccCCCCcccC
Q 033146 108 ASFLHAL---------ARIINPFPIFLY 126 (126)
Q Consensus 108 ~l~v~~~---------~~~~~~~~~~~~ 126 (126)
.|+.... .....|+|.|.|
T Consensus 194 ~lkatYGTTKYCtsYLRn~~CpNp~CMy 221 (480)
T COG5175 194 VLKATYGTTKYCTSYLRNAVCPNPDCMY 221 (480)
T ss_pred eEeeecCchHHHHHHHcCCCCCCCCeee
Confidence 9988653 455678888876
No 93
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.34 E-value=7.7e-07 Score=59.64 Aligned_cols=64 Identities=20% Similarity=0.397 Sum_probs=54.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVS 104 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~ 104 (126)
..++||.||..++++++|+.+|+.|.....+++... + +-..+|++|++.+.|..|+..|+|..+
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 457999999999999999999999987777776433 2 234899999999999999999999865
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.28 E-value=1.7e-06 Score=58.08 Aligned_cols=73 Identities=29% Similarity=0.397 Sum_probs=62.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
.....+.+.|.+++..+.+.+|.+.|..+|.+.+..+ ..+++||+|+..+++.+|+..+++..+.++.|.+.
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 3455788999999999999999999999999854443 23489999999999999999999999999999884
Q ss_pred e
Q 033146 113 A 113 (126)
Q Consensus 113 ~ 113 (126)
.
T Consensus 167 ~ 167 (216)
T KOG0106|consen 167 K 167 (216)
T ss_pred c
Confidence 3
No 95
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.26 E-value=9.8e-07 Score=62.62 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFG--EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
....++||+||-+++++++|.+.+...| .+.++++..++.+|.++|||++..-+.....+.++.|....++|+.-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3355799999999999999999998877 67888899999999999999999999999999999999999999865443
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.24 E-value=4.6e-06 Score=50.23 Aligned_cols=70 Identities=31% Similarity=0.414 Sum_probs=42.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-----eecCcEEEEe
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK-----VSLCMASFLH 112 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~-----~~~g~~l~v~ 112 (126)
+.|.+.+++..++.++|++.|+.||.|..|.+.... ..|+|.|.+.+.|++|+..+.-. .+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 568888999999999999999999999999986542 26999999999999999865543 4455544444
Q ss_pred e
Q 033146 113 A 113 (126)
Q Consensus 113 ~ 113 (126)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 97
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.18 E-value=6.8e-06 Score=59.07 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC-ee--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGE-VV--HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~-v~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
....+|.+.+||+..+.++|.+||..|.. |. .+.++.+ ..|...|.|||+|.+++.|..|....|.+...++.|.|
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 33668999999999999999999998873 43 3777777 57899999999999999999999988888777888888
Q ss_pred eee
Q 033146 112 HAL 114 (126)
Q Consensus 112 ~~~ 114 (126)
..+
T Consensus 357 fp~ 359 (508)
T KOG1365|consen 357 FPC 359 (508)
T ss_pred eec
Confidence 765
No 98
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.14 E-value=3.5e-05 Score=59.25 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=64.7
Q ss_pred CC-eEEEcCCCCCCCHHHHHHHhhccCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 37 ST-NLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 37 ~~-~v~v~nlp~~~~~~~l~~~f~~~G~v~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
++ .|-+.|+|++++-++|-+||..|-.+- .|.+.++ +.|+..|.|-|.|++.++|.+|...|++..|.++.+++.
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 44 677899999999999999999997664 4444444 689999999999999999999999999999999988775
No 99
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.11 E-value=2.7e-05 Score=52.18 Aligned_cols=76 Identities=21% Similarity=0.348 Sum_probs=63.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcEEEEe
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL-CMASFLH 112 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~-g~~l~v~ 112 (126)
..+...+++.|||.+++.+.+..+|.+|....++.++... .+.|||+|.+...+..|...+++..+- ...+.+.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4567789999999999999999999999999999887652 568999999999999999999998775 5555554
Q ss_pred ee
Q 033146 113 AL 114 (126)
Q Consensus 113 ~~ 114 (126)
.+
T Consensus 218 ~a 219 (221)
T KOG4206|consen 218 FA 219 (221)
T ss_pred cc
Confidence 43
No 100
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.07 E-value=0.00019 Score=51.77 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=68.8
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 32 PQAEPSTNLFVSGLSKR-TTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
....+++.+.|-+|... +..+.|.-+|=.||.|.++++++.+ .|-|.|++.+....++|+.+||+..+-|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 45566888999999876 5777889999999999999998874 45799999999999999999999999999998
Q ss_pred Eeeec
Q 033146 111 LHALA 115 (126)
Q Consensus 111 v~~~~ 115 (126)
|..++
T Consensus 357 v~~Sk 361 (494)
T KOG1456|consen 357 VCVSK 361 (494)
T ss_pred Eeecc
Confidence 88765
No 101
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.98 E-value=5.8e-05 Score=43.26 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=46.7
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 38 TNLFVSGLSKRTTDET----LRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~----l~~~f~~~G-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
..|+|.|||.+.+... |+.++..+| .|..+. .+-|++.|.+.+.|.+|.+.|+|-.+.|.+|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999988765 455566776 454431 2369999999999999999999999999999998
Q ss_pred eecccc
Q 033146 113 ALARII 118 (126)
Q Consensus 113 ~~~~~~ 118 (126)
..+...
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 875433
No 102
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=2.8e-05 Score=58.40 Aligned_cols=75 Identities=28% Similarity=0.434 Sum_probs=59.5
Q ss_pred CCeEEEcCCCCCCC------HHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc-EE
Q 033146 37 STNLFVSGLSKRTT------DETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCM-AS 109 (126)
Q Consensus 37 ~~~v~v~nlp~~~~------~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~-~l 109 (126)
...|+|.|+|---. ..-|.++|+++|.+....++-+..+| .+|+.|++|.+..+|+.|++.|||..++-+ ..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 56788999986322 23567889999999999998776544 999999999999999999999999977544 34
Q ss_pred EEe
Q 033146 110 FLH 112 (126)
Q Consensus 110 ~v~ 112 (126)
.|.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 443
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.93 E-value=6.6e-06 Score=57.83 Aligned_cols=79 Identities=25% Similarity=0.385 Sum_probs=70.4
Q ss_pred CCCeEE-EcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 36 PSTNLF-VSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 36 ~~~~v~-v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
...+++ |++++..++.++|+..|..+|.|..+.+..+..++...|+++++|.+......++.. +...+.++.+.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344555 999999999999999999999999999999999999999999999999999998886 788899998888776
Q ss_pred c
Q 033146 115 A 115 (126)
Q Consensus 115 ~ 115 (126)
.
T Consensus 262 ~ 262 (285)
T KOG4210|consen 262 E 262 (285)
T ss_pred C
Confidence 4
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=7.3e-05 Score=55.55 Aligned_cols=81 Identities=27% Similarity=0.336 Sum_probs=66.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH----hCCceecCc
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFS-AFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG----MDGKVSLCM 107 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~----l~g~~~~g~ 107 (126)
..++.++||||+||.-++..+|-.+|. -||.|..+.|-.|++-+.++|-|-|.|.+..+..+||.. ++..+++-
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~K- 444 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDK- 444 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccce-
Confidence 345678999999999999999999998 799999999999977888999999999999999999983 33334433
Q ss_pred EEEEeee
Q 033146 108 ASFLHAL 114 (126)
Q Consensus 108 ~l~v~~~ 114 (126)
+|.|++.
T Consensus 445 RVEIkPY 451 (520)
T KOG0129|consen 445 RVEIKPY 451 (520)
T ss_pred eeeecce
Confidence 5555554
No 105
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.87 E-value=8.9e-05 Score=52.70 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=61.4
Q ss_pred CCCCCCeEEEcCCC----CCCC-------HHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 033146 33 QAEPSTNLFVSGLS----KRTT-------DETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101 (126)
Q Consensus 33 ~~~~~~~v~v~nlp----~~~~-------~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g 101 (126)
.....++|.+.|+= .... .++|.+-+++||.|..+.+.-. .+.|.+.|.|.+.+.|..||..|+|
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcC
Confidence 34456788888872 1222 3567777899999998877422 3678999999999999999999999
Q ss_pred ceecCcEEEEeeec
Q 033146 102 KVSLCMASFLHALA 115 (126)
Q Consensus 102 ~~~~g~~l~v~~~~ 115 (126)
..++||.|..+..-
T Consensus 337 R~fdgRql~A~i~D 350 (382)
T KOG1548|consen 337 RWFDGRQLTASIWD 350 (382)
T ss_pred eeecceEEEEEEeC
Confidence 99999999877653
No 106
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.82 E-value=9.1e-05 Score=39.05 Aligned_cols=52 Identities=31% Similarity=0.525 Sum_probs=40.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAI 96 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al 96 (126)
+.|-|.+.+.+..+.. ..+|..||+|..+.+.. ..-..++.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEV-LEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHH-HHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4578889988766554 55888999999988752 2237999999999999885
No 107
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.77 E-value=0.00027 Score=42.12 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=50.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEE-EeecC------CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc-
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAK-IVKHR------ESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCM- 107 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~-~~~~~------~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~- 107 (126)
..+-|.|-++|.. ....+.+.|++||.|.+.. +.++. ........-.+.|.+..+|.+||. .||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3456888899998 5566788999999987653 11100 001123488999999999999999 799999886
Q ss_pred EEEEeee
Q 033146 108 ASFLHAL 114 (126)
Q Consensus 108 ~l~v~~~ 114 (126)
.+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4557766
No 108
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.75 E-value=3.1e-05 Score=52.90 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=60.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCC--------CCcce----EEEEEeCCHHHHHHHHHHhCCcee
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRES--------GYSKG----FGFVKYATLEAAGKAIEGMDGKVS 104 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~--------~~~~g----~~fv~f~~~~~a~~al~~l~g~~~ 104 (126)
.-.||+++||+.+....|+++|+.||.|-.+.|-....+ |...+ .|.|+|.+...|..+...||+..+
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999998888665544 22222 345899999999999999999999
Q ss_pred cCcE
Q 033146 105 LCMA 108 (126)
Q Consensus 105 ~g~~ 108 (126)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9975
No 109
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.73 E-value=0.00037 Score=50.72 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=61.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc-EEEE
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEV-VHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCM-ASFL 111 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~-~l~v 111 (126)
-.+..++.+.|+|.++++++++..|..-|.. +-.++. ++.+.++++.+.+.+.|-.|+..+|.+.+++. -++|
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff-----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRv 485 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRV 485 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-----CCCcceeecccCChhHhhhhccccccccCCCCceEEE
Confidence 3556789999999999999999999887754 444442 22345899999999999999999999988665 7888
Q ss_pred eeec
Q 033146 112 HALA 115 (126)
Q Consensus 112 ~~~~ 115 (126)
+.++
T Consensus 486 SFSk 489 (492)
T KOG1190|consen 486 SFSK 489 (492)
T ss_pred Eeec
Confidence 7664
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.71 E-value=3.8e-05 Score=55.34 Aligned_cols=77 Identities=19% Similarity=0.093 Sum_probs=58.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAF----GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~----G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
+.-.|...+||+++++.++.+||..- |....+-++..+ .|+..|-|||.|..+++|+.||. .|...++-|.|.+
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIEl 237 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIEL 237 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHH
Confidence 34567788999999999999999632 244556666654 78899999999999999999998 4666666665555
Q ss_pred eee
Q 033146 112 HAL 114 (126)
Q Consensus 112 ~~~ 114 (126)
..+
T Consensus 238 FRS 240 (508)
T KOG1365|consen 238 FRS 240 (508)
T ss_pred HHH
Confidence 443
No 111
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.67 E-value=0.0011 Score=43.66 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=57.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC 106 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g 106 (126)
......+|.|.+||.+.++.+|+++...-|+|-...+.++. .+.|+|...+++.-|+.+|....+..
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------VGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------ceeeeeeehhhHHHHHHhhccccccC
Confidence 34456789999999999999999999999999888776663 78899999999999999998876544
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.0003 Score=52.36 Aligned_cols=67 Identities=19% Similarity=0.345 Sum_probs=50.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCC---CCCcce---EEEEEeCCHHHHHHHHHHhCC
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRE---SGYSKG---FGFVKYATLEAAGKAIEGMDG 101 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~~g---~~fv~f~~~~~a~~al~~l~g 101 (126)
..-.+.|||++||++++|+.|...|..||.+. +.+..... ---.+| |+|+.|+++..++..+.....
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 34468899999999999999999999999875 34432111 122356 999999999998888765443
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.63 E-value=0.0003 Score=52.80 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=51.5
Q ss_pred HHHHHhhccCCeeEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 53 TLRDTFSAFGEVVHAKIVKHR---ESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 53 ~l~~~f~~~G~v~~~~~~~~~---~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
+++.-+.+||.|..|.+.+.- .-.-+.|-.||+|.+.+++++|++.|+|.++.++.+......
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 455557799999999988762 234456779999999999999999999999999998877653
No 114
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.39 E-value=0.00045 Score=50.06 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=65.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRE---SGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
..|.|.||.+.++.++++.+|...|.|.++.|..+.. -......|||-|.+...+..|-. |-++.+-++.|.|-++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 3789999999999999999999999999988764321 12345689999999988887754 8889888889888887
Q ss_pred ccccC
Q 033146 115 ARIIN 119 (126)
Q Consensus 115 ~~~~~ 119 (126)
....-
T Consensus 87 ~~~~~ 91 (479)
T KOG4676|consen 87 GDEVI 91 (479)
T ss_pred CCCCC
Confidence 54433
No 115
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.34 E-value=0.00034 Score=51.15 Aligned_cols=69 Identities=29% Similarity=0.446 Sum_probs=55.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeec---CCC--CC--------cceEEEEEeCCHHHHHHHHHHhC
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH---RES--GY--------SKGFGFVKYATLEAAGKAIEGMD 100 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~---~~~--~~--------~~g~~fv~f~~~~~a~~al~~l~ 100 (126)
+-+.++|.+.|||.+-.-+.|.++|+.+|.|+.|.+... +.+ +. .+-+|+|+|...+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346889999999999888999999999999999988654 211 11 24578999999999999999664
Q ss_pred Cc
Q 033146 101 GK 102 (126)
Q Consensus 101 g~ 102 (126)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 43
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.16 E-value=0.0038 Score=39.60 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=43.9
Q ss_pred HHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 53 TLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 53 ~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
+|.+.|..||.+.-++++.+ .-.|+|.+.+.|.+|+. ++|..+.|+.|+|+..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeC
Confidence 67778889999887777654 36899999999999999 9999999999988654
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.14 E-value=0.0054 Score=44.50 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=59.4
Q ss_pred CCCCCeEEEc--CCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--cCcEE
Q 033146 34 AEPSTNLFVS--GLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVS--LCMAS 109 (126)
Q Consensus 34 ~~~~~~v~v~--nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~--~g~~l 109 (126)
..++..|.++ |--+.++.+-|..++...|.|.+|.+.+. +|. -|.|+|++.+.|++|...|||..| ++-.|
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeE
Confidence 3344545444 44456889999999999999999988765 444 589999999999999999999976 34467
Q ss_pred EEeeec
Q 033146 110 FLHALA 115 (126)
Q Consensus 110 ~v~~~~ 115 (126)
+++.++
T Consensus 192 KIeyAk 197 (494)
T KOG1456|consen 192 KIEYAK 197 (494)
T ss_pred EEEecC
Confidence 777664
No 118
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.05 E-value=0.00068 Score=51.50 Aligned_cols=77 Identities=19% Similarity=0.174 Sum_probs=59.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---cC
Q 033146 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSA-FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVS---LC 106 (126)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~---~g 106 (126)
+......+.|+|.||-.-+|.-+|+.++.. .|.|.+.+|- +.+.+|||.|.+.++|.+....|||..+ +.
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD------kIKShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD------KIKSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH------HhhcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 335666789999999999999999999984 5566666442 2566999999999999999999999854 44
Q ss_pred cEEEEee
Q 033146 107 MASFLHA 113 (126)
Q Consensus 107 ~~l~v~~ 113 (126)
+.|.+..
T Consensus 512 K~L~adf 518 (718)
T KOG2416|consen 512 KHLIADF 518 (718)
T ss_pred ceeEeee
Confidence 4555443
No 119
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.01 E-value=0.00039 Score=47.64 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=47.8
Q ss_pred HHHHHhh-ccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 53 TLRDTFS-AFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 53 ~l~~~f~-~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
++...|+ +||+|.++.+-.+. .-...|-++|.|..+++|++|+..||+..+.|++|..+.+
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444444 89999887654432 2234678999999999999999999999999999988765
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.00 E-value=0.0015 Score=50.70 Aligned_cols=82 Identities=13% Similarity=0.036 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH-AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
......|||..||..+++.++-.+|.....|++ |.|.+. -+++.++.|||.|..+.++.+|...-+.+..+.+.|+|.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 344678999999999999999999988777766 555555 478889999999999888888877677777888889998
Q ss_pred eecc
Q 033146 113 ALAR 116 (126)
Q Consensus 113 ~~~~ 116 (126)
.+.+
T Consensus 510 si~~ 513 (944)
T KOG4307|consen 510 SIAD 513 (944)
T ss_pred chhh
Confidence 7654
No 121
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.98 E-value=0.01 Score=32.23 Aligned_cols=54 Identities=13% Similarity=0.289 Sum_probs=43.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc---CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAF---GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~---G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 99 (126)
..|+|.|+.. ++.++++.+|..| .....+.++-|. -|-|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4688988855 7888899999988 134678887774 4889999999999999754
No 122
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.91 E-value=0.0053 Score=43.18 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=49.1
Q ss_pred HHHHHHHhhccCCeeEEEEeecCCCCCcc-eEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 51 DETLRDTFSAFGEVVHAKIVKHRESGYSK-GFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 51 ~~~l~~~f~~~G~v~~~~~~~~~~~~~~~-g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
++++++-+++||.|..+.+...+...... ---||+|+..++|.+|+.-|||..|+|+.++.-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 35778889999999888777665332222 246999999999999999999999999987653
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.89 E-value=0.0038 Score=49.61 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=64.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc--EEE
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCM--ASF 110 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~--~l~ 110 (126)
.....+.+++++|..++....|...|..||.|..|.+-. ...|+++.|.+...++.|+..+.|..+++- .++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 345578899999999999999999999999999988732 234999999999999999999999988764 466
Q ss_pred Eeeec
Q 033146 111 LHALA 115 (126)
Q Consensus 111 v~~~~ 115 (126)
|..+.
T Consensus 525 vdla~ 529 (975)
T KOG0112|consen 525 VDLAS 529 (975)
T ss_pred ccccc
Confidence 66554
No 124
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.86 E-value=0.0013 Score=48.27 Aligned_cols=70 Identities=24% Similarity=0.297 Sum_probs=54.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-eecCcEEEEeee
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK-VSLCMASFLHAL 114 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~-~~~g~~l~v~~~ 114 (126)
..+|++||.+.++..+|...|..-- ....-.++ ..||+||++.+..++.++++.++|. .+.|+.+.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 3589999999999999999997531 11111222 2469999999999999999999998 688988888765
No 125
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.82 E-value=0.0086 Score=34.39 Aligned_cols=56 Identities=14% Similarity=0.286 Sum_probs=41.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG 101 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g 101 (126)
.+..+|+ +|..+-..+|..+|+.||.|. |.++.+- -|||.....+.+..++..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 3445555 999999999999999999986 4444442 599999999999999887764
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.79 E-value=0.00057 Score=48.51 Aligned_cols=76 Identities=24% Similarity=0.314 Sum_probs=56.2
Q ss_pred CCeEEEcCCCCCCCHHHH---HHHhhccCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 37 STNLFVSGLSKRTTDETL---RDTFSAFGEVVHAKIVKHRE----SGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l---~~~f~~~G~v~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
...+||-+|+..+..+.+ .+.|.+||.|..+....+.. .+-.. -++|+|...++|..||...+|...+|+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 456788888877654443 34688899998888776541 12222 37999999999999999999999999986
Q ss_pred EEee
Q 033146 110 FLHA 113 (126)
Q Consensus 110 ~v~~ 113 (126)
+...
T Consensus 156 ka~~ 159 (327)
T KOG2068|consen 156 KASL 159 (327)
T ss_pred HHhh
Confidence 5543
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.64 E-value=0.00018 Score=56.31 Aligned_cols=69 Identities=29% Similarity=0.398 Sum_probs=57.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL 105 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~ 105 (126)
..++||.||+..+.+.+|...|..+|.+..+.+.-....++.+|.|+++|...+.+.+++....+..++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 356899999999999999999999998877766545567889999999999999999999865555444
No 128
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.44 E-value=0.0031 Score=46.83 Aligned_cols=76 Identities=20% Similarity=0.124 Sum_probs=60.3
Q ss_pred CCCCCeEEEcCCCCCC-CHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 34 AEPSTNLFVSGLSKRT-TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~-~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
..+.+.+-+.-.|+.. +..+|...|.+||.|..|.+-.. ...|.|+|.+..+|-.|.. .++..|+++.|+|.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLF 441 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEE
Confidence 3445556666667664 66789999999999998877443 2368999999999988866 79999999999999
Q ss_pred eecc
Q 033146 113 ALAR 116 (126)
Q Consensus 113 ~~~~ 116 (126)
|-..
T Consensus 442 whnp 445 (526)
T KOG2135|consen 442 WHNP 445 (526)
T ss_pred EecC
Confidence 9754
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.35 E-value=0.0015 Score=51.41 Aligned_cols=73 Identities=25% Similarity=0.254 Sum_probs=61.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
...++|.|.|+..+.+.++.++..+|.+....++..+ .|+++|.+++.|.++.++..+........+..+.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~ 808 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGE 808 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCcc
Confidence 5679999999999999999999999999988887775 789999999999999999988876665544444333
No 130
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.35 E-value=0.0079 Score=39.55 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=44.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-cCCe---eEEEEeecC--CCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSA-FGEV---VHAKIVKHR--ESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC 106 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~-~G~v---~~~~~~~~~--~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g 106 (126)
.....|.|.+||+.++++++.+.+.. ++.- ..+...... .....-.-|+|.|.+.+++......++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 34678999999999999998876665 5544 233211111 111234579999999999999999999986543
No 131
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.33 E-value=0.11 Score=31.58 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=47.1
Q ss_pred CeEEE-cCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 033146 38 TNLFV-SGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC 106 (126)
Q Consensus 38 ~~v~v-~nlp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g 106 (126)
..+.| ...|...+.++|..+.+.+- .|..+.+.++. ...+=.+++.|.+.+.|..-...+||..+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44444 44455556666665555554 56788888874 2356689999999999999999999986544
No 132
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.25 E-value=0.097 Score=37.12 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=52.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcE-EEEeeec
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMA-SFLHALA 115 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~-l~v~~~~ 115 (126)
..=|.|-++|..-. ..|...|+++|.|.+.... .+|. +-+|.|.+..+|++||. .+|..|+|-. |-|+++.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngN---wMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGN---WMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCc---eEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 45566778887543 4567789999998664433 1222 88999999999999999 7999998764 5666643
No 133
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.17 E-value=0.0081 Score=41.40 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=58.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--c--eecCcEEEEee
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG--K--VSLCMASFLHA 113 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g--~--~~~g~~l~v~~ 113 (126)
..|+|.||...++-+.+.+.|+.||++..-.+..| ..++..+-++|.|...-.+.+|+..++- . ...+++.-|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 67999999999999999999999999966555555 3677888899999999888888886532 2 33445555554
Q ss_pred e
Q 033146 114 L 114 (126)
Q Consensus 114 ~ 114 (126)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 4
No 134
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.01 E-value=0.075 Score=33.75 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=54.6
Q ss_pred CCCCCeEEEcCCCCCC----CHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 34 AEPSTNLFVSGLSKRT----TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~----~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
+.+-.+|.|.=|...+ +...+...++.||+|..+.+. ++.-|.|.|.+..+|=+|+..++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 4556678886555444 334455667899999887763 334699999999999999988776 5677788
Q ss_pred EEeeecc
Q 033146 110 FLHALAR 116 (126)
Q Consensus 110 ~v~~~~~ 116 (126)
.+.|-.+
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 8888653
No 135
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.97 E-value=0.064 Score=40.99 Aligned_cols=68 Identities=9% Similarity=0.129 Sum_probs=53.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc--cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eecCcEEEE
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSA--FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK--VSLCMASFL 111 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~--~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~--~~~g~~l~v 111 (126)
.+.|.+.-||.....++++.+|.. +-.+..|.+-.+. -.||+|++..+|+.|.+.|..- .|.|+.|..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 466777999999999999999964 5677888776553 4899999999999999877654 567776643
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.83 E-value=0.31 Score=27.19 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHhhccCC-----eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 47 KRTTDETLRDTFSAFGE-----VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 47 ~~~~~~~l~~~f~~~G~-----v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
..++..+|..++..-+. |-.+.+..+ |+||+-.. +.+..++..|++..+.|+.++|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45788888888876543 445666433 88988875 4788899999999999999999864
No 137
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.74 E-value=0.14 Score=33.90 Aligned_cols=59 Identities=17% Similarity=0.020 Sum_probs=43.5
Q ss_pred CHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceecCcEEEEeee
Q 033146 50 TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD--GKVSLCMASFLHAL 114 (126)
Q Consensus 50 ~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--g~~~~g~~l~v~~~ 114 (126)
....|+++|..++.+..+..++. -+-..|.|.+.+.|.+|...|+ +..+.|..+++.-+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 34788999999998877766543 2247899999999999999999 89999999988765
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.67 E-value=0.093 Score=39.91 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=49.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh----------------------------ccCCeeEEEEeecCCCCCcceEEEEEe
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFS----------------------------AFGEVVHAKIVKHRESGYSKGFGFVKY 86 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~----------------------------~~G~v~~~~~~~~~~~~~~~g~~fv~f 86 (126)
...+++.|+|+|..-...+|..+.. ..|....+.++-|=.+....|||||.|
T Consensus 359 ~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm 438 (549)
T KOG4660|consen 359 DRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINM 438 (549)
T ss_pred cchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEee
Confidence 3455666777776666655555443 144555556666656667789999999
Q ss_pred CCHHHHHHHHHHhCCce
Q 033146 87 ATLEAAGKAIEGMDGKV 103 (126)
Q Consensus 87 ~~~~~a~~al~~l~g~~ 103 (126)
.+.+.+....+.+||..
T Consensus 439 ~sp~ai~~F~kAFnGk~ 455 (549)
T KOG4660|consen 439 TSPEAIIRFYKAFNGKK 455 (549)
T ss_pred cCHHHHHHHHHHHcCCc
Confidence 99999999999999983
No 139
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.26 E-value=0.0093 Score=47.52 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=58.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCM 107 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~ 107 (126)
...+||++||+..+++.+|+..|..+|.+.++.+-..+ -+...-++|+.|-+-+.+..++..+.+..|..-
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g 441 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG 441 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccC
Confidence 36789999999999999999999999999999886543 233345899999999999998888888765433
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.25 E-value=0.09 Score=40.82 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=59.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.-+|||+|+...+..+-+...+..+|-|..+.... |+|..|..+.....++..++-..++|+.+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 44567899999999999999999999999886544321 899999999999999998998889888876554
No 141
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=93.91 E-value=0.81 Score=32.47 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=41.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEeecCCCCCcceEEEEEeCC-------HHHHHHHHHHh
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEV-VHAKIVKHRESGYSKGFGFVKYAT-------LEAAGKAIEGM 99 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v-~~~~~~~~~~~~~~~g~~fv~f~~-------~~~a~~al~~l 99 (126)
...+-|+++||+.++.-.+|+..+.+.+-+ ..+.| . -..|-||+.|.+ .+++.+++..+
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--k----g~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--K----GHFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEee--e----cCCcceeEecCCccCCCCCchHHHHHhccC
Confidence 335669999999999999999999887754 34444 2 245679999965 34455555443
No 142
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=93.77 E-value=0.15 Score=28.23 Aligned_cols=66 Identities=11% Similarity=0.091 Sum_probs=48.6
Q ss_pred HHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeeccccCC
Q 033146 52 ETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARIINP 120 (126)
Q Consensus 52 ~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~~~~~ 120 (126)
.+|++.|...| ++..+.-+..+.++....+-+|+....-+... .|+=..++++.+.|+...+..+|
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~~p 68 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRKNP 68 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccCCC
Confidence 46788888888 68888888777777777788888865433222 45666789999999988766654
No 143
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.98 E-value=0.85 Score=25.04 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=41.2
Q ss_pred CCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 48 RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 48 ~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
.++-++++..+..|+-. .+ ..++ | .=||.|.+..+|.+|....+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I--~~d~-t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RI--RDDR-T-----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eE--EecC-C-----EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46788999999998642 22 2232 2 2489999999999999999999887766654
No 144
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.95 E-value=0.68 Score=34.31 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=47.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGE-VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEG 98 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~-v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 98 (126)
-.+.|-|-++|.....++|...|+.|+. --.|+|+-+. ++|..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3567888999999888899999999975 4678888774 899999999999999983
No 145
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=92.94 E-value=0.31 Score=26.94 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=47.6
Q ss_pred HHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeeccccCC
Q 033146 52 ETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARIINP 120 (126)
Q Consensus 52 ~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~~~~~ 120 (126)
++|.+.|...| .|.++.-+..+.++.....-||+.+...+.. +.++=..+.++.+.|++..+..+|
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~k~~~~ 68 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPRKRREP 68 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCCCCCCC
Confidence 46777888777 7788877777667777788888887654433 345555688899999998766553
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.58 E-value=1.1 Score=33.70 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=56.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC 106 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g 106 (126)
.+.|.|-.+|..++..+|-.|+..+- .|..+.+++++. ..+=..++.|.+..+|..-...+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67888989999999999999998664 578999999642 234478999999999999999999986644
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=90.54 E-value=0.26 Score=34.95 Aligned_cols=74 Identities=26% Similarity=0.127 Sum_probs=57.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
..++.|++++...+.+.+...++..+|......+.........+|++.+.|...+.+..|+.........+..+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 46788999999988888888888888876665555544577889999999999999999999433334455443
No 148
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.19 E-value=0.4 Score=38.63 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--ecCcEEEEeeeccccC
Q 033146 46 SKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV--SLCMASFLHALARIIN 119 (126)
Q Consensus 46 p~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~--~~g~~l~v~~~~~~~~ 119 (126)
+-..+-..|-.+|..||.|...+.+++-. ++.|+|.+.+.|-.|+..++|.. .-|-+.+|..++-...
T Consensus 307 ~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 307 AVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred cccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 33556677889999999999888777632 79999999999999999999984 3555677776654443
No 149
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=88.23 E-value=0.016 Score=42.86 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=64.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV-KHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
.+.+-|.|+|....++.|..++..||.+..+..+ .+++ ....-++|...+.++.++.+++|..+....+++...+
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 4568899999999999999999999999877543 3332 2234478899999999999999999999999988877
Q ss_pred cccCC
Q 033146 116 RIINP 120 (126)
Q Consensus 116 ~~~~~ 120 (126)
+..+.
T Consensus 156 deq~~ 160 (584)
T KOG2193|consen 156 DEQNA 160 (584)
T ss_pred hhhhh
Confidence 76664
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=82.65 E-value=0.22 Score=36.61 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=49.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL 105 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~ 105 (126)
..+++|++|+..+...++-+.|..+|+|....+- .+...-+|-+.|........|+. ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 4679999999999999999999999998776553 33334467788888778888887 6776554
No 151
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=78.04 E-value=2.8 Score=29.81 Aligned_cols=49 Identities=24% Similarity=0.515 Sum_probs=32.9
Q ss_pred CCeEEEcCCCCC------------CCHHHHHHHhhccCCeeEEEEee-----cCCCCCcceEEEEE
Q 033146 37 STNLFVSGLSKR------------TTDETLRDTFSAFGEVVHAKIVK-----HRESGYSKGFGFVK 85 (126)
Q Consensus 37 ~~~v~v~nlp~~------------~~~~~l~~~f~~~G~v~~~~~~~-----~~~~~~~~g~~fv~ 85 (126)
..+|++.+||.. .+++.|...|+.||.|..+.++- ...+|+..|..|-.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~g 214 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHG 214 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeec
Confidence 456888888753 35678999999999998887642 22355554444433
No 152
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=77.55 E-value=8.8 Score=20.79 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.0
Q ss_pred HHHHHHhhccCCeeEEEE
Q 033146 52 ETLRDTFSAFGEVVHAKI 69 (126)
Q Consensus 52 ~~l~~~f~~~G~v~~~~~ 69 (126)
.+|+++|+.+|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999876654
No 153
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=74.36 E-value=15 Score=22.51 Aligned_cols=56 Identities=16% Similarity=0.286 Sum_probs=30.0
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHH
Q 033146 39 NLFVSGLSKR---------TTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA-TLEAAGKAIE 97 (126)
Q Consensus 39 ~v~v~nlp~~---------~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~-~~~~a~~al~ 97 (126)
++.|.|++.. .+...|.+.|..|..++ +..+.++ ...+|+++|.|. +..-...|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4556677543 35578999999998875 4444443 246889999996 5555566655
No 154
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=70.76 E-value=12 Score=21.71 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=19.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHh
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTF 58 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f 58 (126)
...++|.|.|||...++++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 346789999999999999887543
No 155
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=70.59 E-value=6.1 Score=28.20 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=26.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCcEEEEeeeccccC
Q 033146 82 GFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARIIN 119 (126)
Q Consensus 82 ~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~~~~ 119 (126)
|||+|.+..+|+.+++.+.... ...++++.+++..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 6999999999999999655543 34557777765554
No 156
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.84 E-value=57 Score=25.82 Aligned_cols=75 Identities=23% Similarity=0.265 Sum_probs=54.1
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEEeecC----------CCCC----------------------
Q 033146 35 EPSTNLFVSGLSKR-TTDETLRDTFSAF----GEVVHAKIVKHR----------ESGY---------------------- 77 (126)
Q Consensus 35 ~~~~~v~v~nlp~~-~~~~~l~~~f~~~----G~v~~~~~~~~~----------~~~~---------------------- 77 (126)
....+|-|.|+.+. +...+|..+|..| |.|..|.|-... .+|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 44678999999998 7888998888754 477777653211 0111
Q ss_pred ---------------cceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 78 ---------------SKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 78 ---------------~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
.-=||.|+|.+...|.+....+.|..+..-..
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~ 298 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSAN 298 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccc
Confidence 11378899999999999999999998765543
No 157
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=60.33 E-value=27 Score=23.27 Aligned_cols=63 Identities=29% Similarity=0.411 Sum_probs=41.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKA 95 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 95 (126)
.......+++.+++..+....+...|..+|.+....+.............++.+.....+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALES 283 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhh
Confidence 345567899999999999999999999999997666655433333333334444333333333
No 158
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=45.32 E-value=2.8 Score=32.45 Aligned_cols=72 Identities=7% Similarity=0.006 Sum_probs=51.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcE
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMA 108 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~ 108 (126)
.+.+++.|+++..+-.+|...+..+..+..+.+...-..........|.|+---....|+..||+..+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 356889999999999999999999877776666433222233456678887666667777778887665544
No 159
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.59 E-value=3.7 Score=31.01 Aligned_cols=75 Identities=3% Similarity=-0.133 Sum_probs=52.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
+-++..+|....++++.-.|+.||-|..+.+.+.-..+...-.+|+.-.. ..++.|+.-+....+.|..+++..+
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 44567788888999999999999999888776655555666677776554 3556666655555666666666544
No 160
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=43.26 E-value=1e+02 Score=22.33 Aligned_cols=78 Identities=9% Similarity=0.119 Sum_probs=50.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecC-------CCCCcceEEEEEeCCHHHHHHH----HHHhCCc--e
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHR-------ESGYSKGFGFVKYATLEAAGKA----IEGMDGK--V 103 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~-------~~~~~~g~~fv~f~~~~~a~~a----l~~l~g~--~ 103 (126)
.+.+...|+..+++-..+-..|..||+|+.+.++.+. ...+...-..+.|-+.+.+..- +..|+.. .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 3457788999999888888889999999999988664 1112234567788776554322 2222222 4
Q ss_pred ecCcEEEEeee
Q 033146 104 SLCMASFLHAL 114 (126)
Q Consensus 104 ~~g~~l~v~~~ 114 (126)
+....|.+.-+
T Consensus 95 L~S~~L~lsFV 105 (309)
T PF10567_consen 95 LKSESLTLSFV 105 (309)
T ss_pred cCCcceeEEEE
Confidence 55666666554
No 161
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=42.85 E-value=20 Score=25.32 Aligned_cols=76 Identities=22% Similarity=0.159 Sum_probs=50.4
Q ss_pred CCeEEEcCCCCCCCHHH---HHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 37 STNLFVSGLSKRTTDET---LRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~---l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
....+++++-..+..+. +...|+.+-.....+++++. -+..++++|+.|...+...++...-++..+..+.++...
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 44555555544443332 25667766666666777664 567789999999988888888776677777666655543
No 162
>COG5584 Predicted small secreted protein [Function unknown]
Probab=38.84 E-value=83 Score=18.71 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=24.3
Q ss_pred CCCCCCCHHHHHHHhhccCCeeEEEEeecCC
Q 033146 44 GLSKRTTDETLRDTFSAFGEVVHAKIVKHRE 74 (126)
Q Consensus 44 nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~ 74 (126)
|+..+..-.-+++.|.++|+|...++...+.
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe 59 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPE 59 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEecc
Confidence 4566666677899999999999888876664
No 163
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=37.96 E-value=50 Score=18.73 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.3
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCce
Q 033146 78 SKGFGFVKYATLEAAGKAIEGMDGKV 103 (126)
Q Consensus 78 ~~g~~fv~f~~~~~a~~al~~l~g~~ 103 (126)
.+||-||+=.+.++...|+..+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 78999999999999999998877754
No 164
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=37.85 E-value=51 Score=17.97 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=21.1
Q ss_pred CHHHHHHHhhccCCeeEEEEeecCCCCCcce
Q 033146 50 TDETLRDTFSAFGEVVHAKIVKHRESGYSKG 80 (126)
Q Consensus 50 ~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 80 (126)
-+.+|.++|-.--.|.++.+...+.-+++.|
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~G~g 61 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRKGAG 61 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeCCce
Confidence 3456777887777899998887654433333
No 165
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=37.80 E-value=44 Score=26.77 Aligned_cols=76 Identities=18% Similarity=0.116 Sum_probs=56.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+|++.|--..-....+..++...+.++...++.....+...+-++++|.....+..|.. |.+..+....++..+.
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks~p~ 587 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKSHPG 587 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceecccc
Confidence 377887777777777788888888888888777777777777789999998877765544 6777776666665543
No 166
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=36.39 E-value=69 Score=23.88 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCcee
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGE-VVHAKIVKHRESG--YSKGFGFVKYATLEAAGKAIEGMDGKVS 104 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~-v~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~al~~l~g~~~ 104 (126)
...|.|.+||...++.++.+....+-. +....+.....+- .--+.++|.|....+...-...++|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 457889999999999998888776532 2222222111111 1145789999999888777777888754
No 167
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.86 E-value=68 Score=17.48 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=21.0
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCc
Q 033146 81 FGFVKYATLEAAGKAIEGMDGKVSLCM 107 (126)
Q Consensus 81 ~~fv~f~~~~~a~~al~~l~g~~~~g~ 107 (126)
..++.|.+...|.++-+.|+...+.++
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 578999999999999887776655443
No 168
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=33.68 E-value=8.4 Score=26.51 Aligned_cols=67 Identities=30% Similarity=0.439 Sum_probs=51.6
Q ss_pred CCeEEEcC----CCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 033146 37 STNLFVSG----LSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVS 104 (126)
Q Consensus 37 ~~~v~v~n----lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~ 104 (126)
..+++.++ |...++++.+...|+.-|++..+.+..+. .|+++-++|+++.-......++..+.+...
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 45566677 77778888899999999999888888775 477777899988777777777776666543
No 169
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=33.63 E-value=21 Score=26.74 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=44.4
Q ss_pred CeEEEcCCCCCCCH--------HHHHHHhhc--cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 033146 38 TNLFVSGLSKRTTD--------ETLRDTFSA--FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97 (126)
Q Consensus 38 ~~v~v~nlp~~~~~--------~~l~~~f~~--~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~ 97 (126)
+.+|+.++...... +++..+|.. .+....+...++......+|..|++|.....+++.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 44666666654433 488888987 5677777777766567788889999999999987763
No 170
>PHA01632 hypothetical protein
Probab=33.54 E-value=55 Score=17.31 Aligned_cols=20 Identities=20% Similarity=0.566 Sum_probs=16.4
Q ss_pred EEEcCCCCCCCHHHHHHHhh
Q 033146 40 LFVSGLSKRTTDETLRDTFS 59 (126)
Q Consensus 40 v~v~nlp~~~~~~~l~~~f~ 59 (126)
+.|..+|..-++++|++.+.
T Consensus 19 ilieqvp~kpteeelrkvlp 38 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLP 38 (64)
T ss_pred EehhhcCCCCCHHHHHHHHH
Confidence 44578999999999988765
No 171
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.53 E-value=43 Score=23.34 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=27.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEE
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAK 68 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~ 68 (126)
...++|+-|+|...+++.|.++.+..|-+..+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 356799999999999999999999988665444
No 172
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=33.48 E-value=40 Score=16.14 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHhhccC
Q 033146 47 KRTTDETLRDTFSAFG 62 (126)
Q Consensus 47 ~~~~~~~l~~~f~~~G 62 (126)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678899999998754
No 173
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=32.95 E-value=84 Score=22.19 Aligned_cols=30 Identities=10% Similarity=-0.033 Sum_probs=22.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEE
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHA 67 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~ 67 (126)
....|+|||+.++..-+..+++..-.+...
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~ 125 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDM 125 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceE
Confidence 456699999999999999988865444333
No 174
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.82 E-value=1.4e+02 Score=23.04 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=42.7
Q ss_pred EcCCCCCC---CHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 42 VSGLSKRT---TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 42 v~nlp~~~---~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
||||+.-. ....+.++=.+||++-.+++-. .-.|.-.+.+.|+.++. -|+..+.+|..
T Consensus 37 IGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 37 IGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred cccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 67776533 3456666667999998777622 24678889999999998 68888888875
No 175
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=29.60 E-value=1.4e+02 Score=21.08 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=39.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHHhCCceecCcEEEEe
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYA-TLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~-~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
......|||++|..........+.+..+=.-....++.-.......||+.-..+ +.++...+++++.+..+....+-+-
T Consensus 34 v~~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~G 113 (299)
T KOG4840|consen 34 VESVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVG 113 (299)
T ss_pred ceEEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEEe
Confidence 334567999999876543332233322211111111111111112344444443 6777888888777665444333333
Q ss_pred eecc
Q 033146 113 ALAR 116 (126)
Q Consensus 113 ~~~~ 116 (126)
.+..
T Consensus 114 hSTG 117 (299)
T KOG4840|consen 114 HSTG 117 (299)
T ss_pred cCcc
Confidence 3333
No 176
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=29.53 E-value=1.1e+02 Score=20.44 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=44.4
Q ss_pred CeEEEcCCCCCCCH-HH----HHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc-EEEE
Q 033146 38 TNLFVSGLSKRTTD-ET----LRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCM-ASFL 111 (126)
Q Consensus 38 ~~v~v~nlp~~~~~-~~----l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~-~l~v 111 (126)
+.+.+.+++..+-. .. ...+|.+|.+.....+.+ +.+..-|.|.+...+..|...+++..+.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 44666777665422 22 233445554443333332 234567899999999999999999999888 5555
Q ss_pred eee
Q 033146 112 HAL 114 (126)
Q Consensus 112 ~~~ 114 (126)
.-+
T Consensus 85 yfa 87 (193)
T KOG4019|consen 85 YFA 87 (193)
T ss_pred EEc
Confidence 433
No 177
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=28.00 E-value=1.9e+02 Score=19.42 Aligned_cols=48 Identities=27% Similarity=0.174 Sum_probs=33.4
Q ss_pred CCHHHHHHHhhcc-CCeeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHH
Q 033146 49 TTDETLRDTFSAF-GEVVHAKIVKHRESG--YSKGFGFVKYATLEAAGKAIE 97 (126)
Q Consensus 49 ~~~~~l~~~f~~~-G~v~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~al~ 97 (126)
.+++.|..+...- |.+..+.+.+.. .+ ..+|-.||+|.+.+++.+++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhh
Confidence 5666666555433 577777765443 33 457889999999999998776
No 178
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=27.81 E-value=1.8e+02 Score=20.37 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=40.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHh
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHR---ESGYSKGFGFVKYATLEAAGKAIEGM 99 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G-~v~~~~~~~~~---~~~~~~g~~fv~f~~~~~a~~al~~l 99 (126)
.-++.|.-||..-.++-++.+|+..| .|.--.+..+. ..|.++ |..+......-...++.+|
T Consensus 118 pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~-y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 118 PLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSR-YVDLTLTGTVRLADALNHL 183 (245)
T ss_pred ceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCc-ceEEEEeeeEEHHHHHhhh
Confidence 35678888998889999999999999 34333333332 345544 5566666555555565543
No 179
>PF14893 PNMA: PNMA
Probab=27.65 E-value=54 Score=24.03 Aligned_cols=29 Identities=17% Similarity=0.509 Sum_probs=22.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh----ccCCe
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFS----AFGEV 64 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~----~~G~v 64 (126)
..+.+.|.+||.+++++++++.+. ..|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~y 49 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRY 49 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccc
Confidence 345688999999999999888764 45544
No 180
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=26.44 E-value=22 Score=26.05 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=36.1
Q ss_pred HHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 033146 51 DETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102 (126)
Q Consensus 51 ~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~ 102 (126)
...+.+++.+.|.+.+-.+.+- -+-|.+|+.....+++.+++..|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rt----FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRT----FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHH----hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 4677888888888765444322 24578899999999999999988875
No 181
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=24.87 E-value=44 Score=20.75 Aligned_cols=61 Identities=8% Similarity=-0.019 Sum_probs=37.8
Q ss_pred CCHHHHHHHhhcc-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 49 TTDETLRDTFSAF-GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 49 ~~~~~l~~~f~~~-G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
.+-..|...+... +....+.+..- ..++..+.|.+.+++.+++. .....+++..+.++.-.
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWS 90 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhc
Confidence 5566666666542 22222332211 23578899999999999988 45556777777766654
No 182
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=24.78 E-value=84 Score=14.77 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.1
Q ss_pred CCCHHHHHHHhhccCCe
Q 033146 48 RTTDETLRDTFSAFGEV 64 (126)
Q Consensus 48 ~~~~~~l~~~f~~~G~v 64 (126)
.++.++|++.+..+|-.
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 46889999999998854
No 183
>PRK10905 cell division protein DamX; Validated
Probab=24.07 E-value=3e+02 Score=20.27 Aligned_cols=64 Identities=16% Similarity=0.026 Sum_probs=37.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCc
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYS-KGFGFVKYATLEAAGKAIEGMDGK 102 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~al~~l~g~ 102 (126)
....+|-|..+.. .+.|+.+..+.|--....+... ..|+. --.-+-.|.+.++|++|+..|-.-
T Consensus 245 a~~YTLQL~A~Ss---~~~l~~fakKlgL~~y~vy~Tt-RnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 245 SSHYTLQLSSSSN---YDNLNGWAKKENLKNYVVYETT-RNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CCceEEEEEecCC---HHHHHHHHHHcCCCceEEEEec-cCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 3456777765554 4667777777653222322222 23331 123345689999999999987654
No 184
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=23.98 E-value=88 Score=21.73 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=19.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhh
Q 033146 37 STNLFVSGLSKRTTDETLRDTFS 59 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~ 59 (126)
...++|+|||+..+..-|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45688999999999998888886
No 185
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=23.79 E-value=1.9e+02 Score=17.96 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=28.3
Q ss_pred CCCHHHHHHHhhccC-----CeeEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 033146 48 RTTDETLRDTFSAFG-----EVVHAKIVKHRESGYSKGFGFVKYATLEAAG 93 (126)
Q Consensus 48 ~~~~~~l~~~f~~~G-----~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 93 (126)
.++.++|++-++..- .|.-..+...-.+|++.|||.| |.+.+.+.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 367778877776432 2233344455567888999986 66666655
No 186
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=23.05 E-value=3.6e+02 Score=20.92 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=33.6
Q ss_pred CHHHHHHHhh----ccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 033146 50 TDETLRDTFS----AFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100 (126)
Q Consensus 50 ~~~~l~~~f~----~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 100 (126)
+..+|..+|. .+|-|.++.+...+. .......++.|.+.+++..++..+.
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 3456666654 466777777655542 2334567889999999999887654
No 187
>PF15063 TC1: Thyroid cancer protein 1
Probab=22.96 E-value=72 Score=18.04 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=22.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCe
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEV 64 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v 64 (126)
.++--+.||=.++....|+.+|..-|+.
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 3444467787889999999999998875
No 188
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=22.28 E-value=1.7e+02 Score=16.89 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=29.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEe
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKY 86 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f 86 (126)
..-|||++++..+.+.--....+..+.-.-+-+-.+ .+ ..||.|-.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~-~n--eqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD-NN--EQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc-CC--CCCEEEEEe
Confidence 456999999998888766666665444333322222 12 677888766
No 189
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=22.04 E-value=33 Score=18.84 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=16.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHh
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTF 58 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f 58 (126)
...++|||.+|..+-.+.=...+
T Consensus 26 tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred cCceEEECCCChHHHHcCcchHH
Confidence 46789999999987665433333
No 190
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=21.32 E-value=1.3e+02 Score=15.01 Aligned_cols=27 Identities=11% Similarity=0.282 Sum_probs=20.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCe
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEV 64 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v 64 (126)
..+++.+........+|++.+..+|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 356677666577889999999998863
Done!