Query 033146
Match_columns 126
No_of_seqs 120 out of 1365
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 17:02:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 5.8E-24 2E-28 126.5 11.8 82 34-115 16-97 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 7E-23 2.4E-27 123.9 11.9 83 35-117 4-86 (110)
3 2cpz_A CUG triplet repeat RNA- 99.9 2.4E-22 8.1E-27 122.3 13.6 89 33-121 21-109 (115)
4 2do4_A Squamous cell carcinoma 99.9 5.8E-22 2E-26 117.7 13.9 86 31-117 11-96 (100)
5 2cq0_A Eukaryotic translation 99.9 2.9E-22 9.9E-27 119.6 12.3 89 33-121 11-99 (103)
6 2dgo_A Cytotoxic granule-assoc 99.9 7.3E-22 2.5E-26 120.0 13.8 86 33-118 11-96 (115)
7 2cqc_A Arginine/serine-rich sp 99.9 5.5E-22 1.9E-26 116.6 12.6 83 33-115 11-93 (95)
8 2la6_A RNA-binding protein FUS 99.9 4E-22 1.4E-26 118.3 12.1 85 31-115 7-99 (99)
9 2e5h_A Zinc finger CCHC-type a 99.9 5E-22 1.7E-26 116.7 12.2 82 34-115 13-94 (94)
10 3md1_A Nuclear and cytoplasmic 99.9 5.1E-22 1.7E-26 114.1 11.7 81 38-118 2-82 (83)
11 1p27_B RNA-binding protein 8A; 99.9 4E-22 1.4E-26 119.5 11.6 84 34-117 20-103 (106)
12 1x5u_A Splicing factor 3B subu 99.9 5E-22 1.7E-26 118.9 12.0 87 33-119 11-97 (105)
13 2dnm_A SRP46 splicing factor; 99.9 2.2E-22 7.6E-27 120.1 10.3 87 33-119 9-95 (103)
14 3bs9_A Nucleolysin TIA-1 isofo 99.9 4.7E-22 1.6E-26 115.2 11.4 82 35-116 4-85 (87)
15 2lxi_A RNA-binding protein 10; 99.9 5.4E-23 1.9E-27 120.5 7.3 85 37-121 1-87 (91)
16 3p5t_L Cleavage and polyadenyl 99.9 5E-23 1.7E-27 120.3 7.0 84 38-121 2-87 (90)
17 2khc_A Testis-specific RNP-typ 99.9 6.5E-22 2.2E-26 120.8 12.3 84 32-115 35-118 (118)
18 2kt5_A RNA and export factor-b 99.9 2.7E-21 9.2E-26 119.0 15.1 92 33-125 31-122 (124)
19 2jrs_A RNA-binding protein 39; 99.9 5.7E-22 2E-26 119.5 11.8 88 31-118 20-107 (108)
20 3mdf_A Peptidyl-prolyl CIS-tra 99.9 4.6E-22 1.6E-26 114.8 10.9 81 35-115 5-85 (85)
21 2cqd_A RNA-binding region cont 99.9 9.8E-22 3.3E-26 119.7 12.8 90 30-120 10-99 (116)
22 2dgs_A DAZ-associated protein 99.9 8.6E-22 2.9E-26 116.8 12.2 85 34-119 7-91 (99)
23 2dnz_A Probable RNA-binding pr 99.9 7.2E-22 2.5E-26 116.2 11.7 85 36-120 4-88 (95)
24 2cph_A RNA binding motif prote 99.9 9.6E-22 3.3E-26 118.0 12.2 89 32-120 10-100 (107)
25 1x4h_A RNA-binding protein 28; 99.9 1.6E-21 5.4E-26 117.8 13.1 87 33-119 11-103 (111)
26 1whw_A Hypothetical protein ri 99.9 1.2E-21 4.1E-26 116.1 12.0 85 35-119 6-90 (99)
27 2x1f_A MRNA 3'-END-processing 99.9 3E-22 1E-26 118.2 9.3 85 36-120 1-85 (96)
28 2cqb_A Peptidyl-prolyl CIS-tra 99.9 7E-22 2.4E-26 117.7 10.8 86 34-119 9-94 (102)
29 2dnh_A Bruno-like 5, RNA bindi 99.9 2.3E-21 7.9E-26 116.0 13.1 87 34-121 12-101 (105)
30 1x5s_A Cold-inducible RNA-bind 99.9 9.8E-22 3.3E-26 117.1 11.3 86 34-119 9-94 (102)
31 2lkz_A RNA-binding protein 5; 99.9 2E-22 6.8E-27 118.9 8.1 83 34-116 6-94 (95)
32 2d9p_A Polyadenylate-binding p 99.9 1.9E-21 6.4E-26 116.1 12.5 86 33-120 11-96 (103)
33 2kxn_B Transformer-2 protein h 99.9 6.4E-22 2.2E-26 122.8 10.5 86 32-117 41-126 (129)
34 2cpf_A RNA binding motif prote 99.9 1.3E-21 4.3E-26 115.8 11.2 86 35-120 3-91 (98)
35 3s7r_A Heterogeneous nuclear r 99.9 1.9E-21 6.4E-26 112.7 11.6 81 33-114 7-87 (87)
36 1oo0_B CG8781-PA, drosophila Y 99.9 1.2E-21 4.3E-26 118.1 11.1 85 33-117 22-106 (110)
37 2cpe_A RNA-binding protein EWS 99.9 1.7E-21 5.7E-26 118.1 11.7 88 32-119 10-105 (113)
38 2dgx_A KIAA0430 protein; RRM d 99.9 1.6E-21 5.6E-26 115.1 11.3 85 35-122 7-95 (96)
39 2dng_A Eukaryotic translation 99.9 4.3E-21 1.5E-25 114.5 12.9 84 34-119 12-95 (103)
40 2div_A TRNA selenocysteine ass 99.9 1.6E-21 5.3E-26 115.6 10.7 84 35-118 7-95 (99)
41 2dgp_A Bruno-like 4, RNA bindi 99.9 1.5E-21 5.1E-26 117.0 10.7 87 33-119 9-98 (106)
42 2cq3_A RNA-binding protein 9; 99.9 7.8E-21 2.7E-25 113.4 13.7 87 32-120 10-96 (103)
43 1u6f_A Tcubp1, RNA-binding pro 99.9 1E-20 3.5E-25 118.5 14.8 87 32-118 37-123 (139)
44 2cq4_A RNA binding motif prote 99.9 8.5E-22 2.9E-26 119.6 9.4 83 34-117 22-104 (114)
45 2ywk_A Putative RNA-binding pr 99.9 2E-21 6.9E-26 114.3 10.7 82 33-115 12-93 (95)
46 1x5t_A Splicing factor 3B subu 99.9 1.5E-21 5.1E-26 115.0 10.1 84 36-119 4-88 (96)
47 4f25_A Polyadenylate-binding p 99.9 2.5E-21 8.7E-26 117.8 11.3 80 36-117 4-83 (115)
48 3ulh_A THO complex subunit 4; 99.9 3.9E-21 1.3E-25 115.4 11.9 82 33-115 25-106 (107)
49 2dh8_A DAZ-associated protein 99.9 2.6E-21 9E-26 115.8 11.1 87 33-120 12-98 (105)
50 3n9u_C Cleavage and polyadenyl 99.9 2.1E-21 7.2E-26 124.0 10.9 81 36-116 54-136 (156)
51 1wi8_A EIF-4B, eukaryotic tran 99.9 3.7E-21 1.3E-25 115.0 11.3 82 35-118 13-95 (104)
52 1x4a_A Splicing factor, argini 99.9 1.7E-20 5.7E-25 113.0 14.2 87 31-120 16-102 (109)
53 3ns6_A Eukaryotic translation 99.9 5.8E-22 2E-26 117.9 7.3 81 36-116 5-92 (100)
54 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.5E-20 5E-25 112.2 13.4 86 32-119 10-95 (103)
55 2cqp_A RNA-binding protein 12; 99.9 2.3E-21 8E-26 114.6 9.8 83 34-116 12-94 (98)
56 3ex7_B RNA-binding protein 8A; 99.9 3.2E-21 1.1E-25 118.9 10.5 86 33-118 18-103 (126)
57 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 8.1E-21 2.8E-25 118.8 12.4 84 31-114 57-140 (140)
58 2fy1_A RNA-binding motif prote 99.9 4.7E-21 1.6E-25 116.8 10.9 84 34-118 4-87 (116)
59 2cqg_A TDP-43, TAR DNA-binding 99.9 2.8E-20 9.4E-25 111.0 14.0 85 33-119 11-95 (103)
60 2j76_E EIF-4B, EIF4B, eukaryot 99.9 5.7E-22 1.9E-26 117.9 6.6 88 28-117 10-98 (100)
61 2do0_A HnRNP M, heterogeneous 99.9 2.5E-20 8.5E-25 113.0 13.7 81 34-115 12-92 (114)
62 2m2b_A RNA-binding protein 10; 99.9 1.5E-21 5.1E-26 121.4 8.4 85 32-117 18-108 (131)
63 2dhg_A TRNA selenocysteine ass 99.9 5.4E-21 1.9E-25 114.2 10.5 84 34-118 6-91 (104)
64 3ucg_A Polyadenylate-binding p 99.9 6.7E-21 2.3E-25 110.7 10.6 80 36-116 5-84 (89)
65 2kn4_A Immunoglobulin G-bindin 99.9 1.1E-20 3.7E-25 120.6 12.4 86 34-119 67-152 (158)
66 1p1t_A Cleavage stimulation fa 99.9 1.4E-21 4.8E-26 116.7 7.8 84 35-118 6-89 (104)
67 1h2v_Z 20 kDa nuclear CAP bind 99.9 1.4E-20 4.7E-25 120.0 12.8 84 34-117 36-119 (156)
68 2rs2_A Musashi-1, RNA-binding 99.9 6.8E-21 2.3E-25 114.9 10.5 87 31-118 19-105 (109)
69 2dgv_A HnRNP M, heterogeneous 99.9 1.2E-20 4.1E-25 110.3 11.2 84 35-120 6-89 (92)
70 4a8x_A RNA-binding protein wit 99.9 6.4E-21 2.2E-25 110.5 9.8 81 36-116 3-84 (88)
71 1s79_A Lupus LA protein; RRM, 99.9 3.2E-21 1.1E-25 115.4 8.3 80 35-116 9-88 (103)
72 2jwn_A Embryonic polyadenylate 99.8 2.6E-21 8.9E-26 119.0 7.9 80 36-116 35-114 (124)
73 2db1_A Heterogeneous nuclear r 99.8 8.1E-21 2.8E-25 116.1 9.9 82 33-116 13-97 (118)
74 2dgw_A Probable RNA-binding pr 99.8 4.1E-20 1.4E-24 107.9 12.4 81 34-117 7-87 (91)
75 2ek1_A RNA-binding protein 12; 99.8 3.8E-21 1.3E-25 113.1 7.9 80 36-115 14-93 (95)
76 2lea_A Serine/arginine-rich sp 99.8 2.7E-21 9.1E-26 120.9 7.6 89 32-120 42-130 (135)
77 1wel_A RNA-binding protein 12; 99.8 3.5E-21 1.2E-25 118.6 8.0 84 33-117 21-104 (124)
78 2err_A Ataxin-2-binding protei 99.8 9E-21 3.1E-25 114.4 9.6 86 30-117 22-107 (109)
79 2mss_A Protein (musashi1); RNA 99.8 2.9E-21 9.9E-26 109.0 6.9 75 39-114 1-75 (75)
80 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.3E-20 8E-25 120.1 11.9 84 34-117 69-152 (165)
81 1x4e_A RNA binding motif, sing 99.8 1.4E-21 4.9E-26 112.8 5.5 81 35-115 3-83 (85)
82 2cpi_A CCR4-NOT transcription 99.8 1.5E-20 5E-25 113.8 10.2 85 34-118 12-102 (111)
83 1x4b_A Heterogeneous nuclear r 99.8 2E-20 6.7E-25 113.9 10.4 84 35-119 25-108 (116)
84 2cpy_A RNA-binding protein 12; 99.8 1.1E-20 3.8E-25 114.8 9.2 82 34-117 12-94 (114)
85 1wg5_A Heterogeneous nuclear r 99.8 2.4E-20 8.2E-25 111.6 10.5 83 34-118 12-95 (104)
86 2nlw_A Eukaryotic translation 99.8 1.9E-20 6.5E-25 112.2 10.0 83 34-118 12-101 (105)
87 2dis_A Unnamed protein product 99.8 1.6E-20 5.4E-25 113.1 9.6 85 36-120 7-95 (109)
88 2f3j_A RNA and export factor b 99.8 6E-20 2.1E-24 119.5 12.6 85 35-120 86-170 (177)
89 2fc9_A NCL protein; structure 99.8 5.5E-20 1.9E-24 109.3 11.4 84 33-120 11-94 (101)
90 1x5o_A RNA binding motif, sing 99.8 8.8E-20 3E-24 110.6 12.5 83 33-116 21-111 (114)
91 2ki2_A SS-DNA binding protein 99.8 1.4E-21 4.8E-26 113.9 4.2 82 38-120 2-83 (90)
92 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.1E-21 1.8E-25 108.4 6.1 76 38-114 1-76 (77)
93 2fc8_A NCL protein; structure 99.8 1.2E-19 3.9E-24 108.0 11.7 84 33-119 11-94 (102)
94 1fj7_A Nucleolin RBD1, protein 99.8 2.7E-21 9.1E-26 115.0 4.5 84 33-118 13-96 (101)
95 1sjq_A Polypyrimidine tract-bi 99.8 3.2E-20 1.1E-24 111.0 9.1 78 35-118 14-93 (105)
96 2a3j_A U1 small nuclear ribonu 99.8 5.3E-20 1.8E-24 113.8 10.2 82 34-118 26-111 (127)
97 2e5j_A Methenyltetrahydrofolat 99.8 1.1E-19 3.7E-24 107.4 10.9 80 33-117 15-94 (97)
98 1why_A Hypothetical protein ri 99.8 2.1E-19 7.3E-24 106.0 12.0 77 35-117 15-93 (97)
99 2hgl_A HNRPF protein, heteroge 99.8 2.5E-20 8.6E-25 116.5 8.3 82 33-116 40-124 (136)
100 1wez_A HnRNP H', FTP-3, hetero 99.8 6.4E-20 2.2E-24 109.5 9.7 82 34-118 12-93 (102)
101 2cpx_A Hypothetical protein FL 99.8 2.6E-20 8.9E-25 113.1 8.1 87 35-121 23-109 (115)
102 1x4c_A Splicing factor, argini 99.8 2.4E-19 8.3E-24 107.8 12.2 77 35-118 13-94 (108)
103 2dnq_A RNA-binding protein 4B; 99.8 1.4E-19 4.8E-24 105.5 10.8 78 35-120 6-83 (90)
104 2dnn_A RNA-binding protein 12; 99.8 5.5E-20 1.9E-24 111.0 9.2 79 35-116 14-92 (109)
105 2cq1_A PTB-like protein L; RRM 99.8 2E-19 7E-24 107.1 11.5 79 34-118 12-92 (101)
106 2ytc_A PRE-mRNA-splicing facto 99.8 1.8E-19 6.2E-24 103.8 10.8 77 33-115 8-85 (85)
107 3q2s_C Cleavage and polyadenyl 99.8 3.7E-20 1.3E-24 124.9 9.1 80 36-115 67-148 (229)
108 4f02_A Polyadenylate-binding p 99.8 1.7E-19 6E-24 120.1 11.9 82 35-116 13-94 (213)
109 2jvo_A Nucleolar protein 3; nu 99.8 1.2E-19 4.2E-24 109.3 10.0 79 32-118 26-104 (108)
110 2yh0_A Splicing factor U2AF 65 99.8 7E-19 2.4E-23 115.3 14.4 84 34-117 111-194 (198)
111 1wex_A Hypothetical protein (r 99.8 2E-19 7E-24 107.6 10.7 79 35-119 13-93 (104)
112 2xnq_A Nuclear polyadenylated 99.8 2.6E-19 9E-24 105.8 11.0 79 30-116 15-94 (97)
113 1x4d_A Matrin 3; structural ge 99.8 1.1E-19 3.7E-24 108.4 9.2 79 35-119 13-94 (102)
114 2dgt_A RNA-binding protein 30; 99.8 4.3E-19 1.5E-23 103.7 11.5 79 34-120 7-85 (92)
115 2lmi_A GRSF-1, G-rich sequence 99.8 2.6E-20 8.8E-25 112.0 6.2 82 33-116 7-91 (107)
116 1iqt_A AUF1, heterogeneous nuc 99.8 1.9E-20 6.4E-25 105.6 5.2 75 39-114 1-75 (75)
117 2krb_A Eukaryotic translation 99.8 3.5E-20 1.2E-24 106.1 6.4 73 37-111 1-80 (81)
118 2cpj_A Non-POU domain-containi 99.8 2.2E-19 7.4E-24 106.4 10.0 80 33-118 11-90 (99)
119 2wbr_A GW182, gawky, LD47780P; 99.8 1.5E-19 5.1E-24 104.2 8.9 74 37-116 7-80 (89)
120 3md3_A Nuclear and cytoplasmic 99.8 6.4E-19 2.2E-23 112.3 12.7 82 34-115 84-165 (166)
121 1fjc_A Nucleolin RBD2, protein 99.8 1.3E-19 4.4E-24 106.7 8.6 82 32-118 11-92 (96)
122 1x4g_A Nucleolysin TIAR; struc 99.8 3.4E-19 1.2E-23 107.3 10.6 81 34-120 22-102 (109)
123 2ad9_A Polypyrimidine tract-bi 99.8 2.4E-19 8.2E-24 109.5 9.8 79 34-118 28-108 (119)
124 3r27_A HnRNP L, heterogeneous 99.8 3E-19 1E-23 105.8 9.9 80 33-118 17-98 (100)
125 2xs2_A Deleted in azoospermia- 99.8 6.1E-20 2.1E-24 109.3 6.9 81 34-117 6-86 (102)
126 2jvr_A Nucleolar protein 3; RN 99.8 2.1E-19 7.2E-24 108.7 9.2 77 36-116 27-104 (111)
127 1nu4_A U1A RNA binding domain; 99.8 1.2E-19 4.3E-24 106.9 7.9 82 34-118 5-90 (97)
128 2e44_A Insulin-like growth fac 99.8 4.5E-19 1.5E-23 104.4 10.0 80 35-118 13-93 (96)
129 1b7f_A Protein (SXL-lethal pro 99.8 5.6E-19 1.9E-23 113.0 11.2 83 36-118 2-84 (168)
130 3lqv_A PRE-mRNA branch site pr 99.8 5.4E-19 1.8E-23 107.3 10.5 79 35-116 6-84 (115)
131 1fxl_A Paraneoplastic encephal 99.8 8E-19 2.7E-23 112.0 11.7 82 37-118 2-83 (167)
132 2la4_A Nuclear and cytoplasmic 99.8 3.1E-19 1E-23 106.0 9.1 76 35-116 25-100 (101)
133 2cpd_A Apobec-1 stimulating pr 99.8 2.5E-18 8.6E-23 101.7 13.0 78 33-118 11-90 (99)
134 2qfj_A FBP-interacting repress 99.8 8.8E-19 3E-23 116.2 12.1 88 35-122 123-210 (216)
135 2dnp_A RNA-binding protein 14; 99.8 1.1E-18 3.8E-23 101.6 10.9 77 34-118 6-82 (90)
136 2dgu_A Heterogeneous nuclear r 99.8 1.9E-18 6.5E-23 103.0 11.8 77 34-118 8-84 (103)
137 1whx_A Hypothetical protein ri 99.8 3.2E-19 1.1E-23 107.9 8.0 78 35-118 8-85 (111)
138 1x5p_A Negative elongation fac 99.8 3.5E-18 1.2E-22 100.8 12.3 79 33-119 11-89 (97)
139 1wf1_A RNA-binding protein RAL 99.8 1.4E-18 4.9E-23 104.7 10.8 75 36-118 26-101 (110)
140 2hgm_A HNRPF protein, heteroge 99.8 1.9E-19 6.4E-24 111.1 6.8 82 33-117 38-121 (126)
141 1x4f_A Matrin 3; structural ge 99.8 7.2E-19 2.5E-23 106.3 9.2 81 34-120 22-105 (112)
142 2g4b_A Splicing factor U2AF 65 99.8 1.7E-18 6E-23 111.1 11.6 79 36-114 93-171 (172)
143 3pgw_S U1-70K; protein-RNA com 99.8 1.3E-18 4.3E-23 127.0 12.1 83 35-117 100-182 (437)
144 1l3k_A Heterogeneous nuclear r 99.8 1.4E-18 4.7E-23 113.7 11.1 84 33-117 9-92 (196)
145 2i2y_A Fusion protein consists 99.8 1E-18 3.5E-23 110.7 10.2 81 32-117 68-148 (150)
146 2e5g_A U6 snRNA-specific termi 99.8 1.6E-18 5.5E-23 101.7 10.3 79 36-120 7-85 (94)
147 2lcw_A RNA-binding protein FUS 99.7 6.7E-21 2.3E-25 116.0 0.0 84 35-118 5-96 (116)
148 2hvz_A Splicing factor, argini 99.8 3.3E-19 1.1E-23 105.9 7.1 76 38-118 1-76 (101)
149 2kvi_A Nuclear polyadenylated 99.8 8.6E-19 2.9E-23 103.3 8.7 79 34-120 7-86 (96)
150 2dha_A FLJ20171 protein; RRM d 99.8 3.6E-19 1.2E-23 109.5 7.1 79 35-115 21-103 (123)
151 2cqh_A IGF-II mRNA-binding pro 99.8 1.1E-18 3.8E-23 102.1 8.7 78 35-119 6-85 (93)
152 2j8a_A Histone-lysine N-methyl 99.8 8E-19 2.8E-23 107.6 8.3 78 38-115 3-94 (136)
153 3egn_A RNA-binding protein 40; 99.8 3.9E-19 1.3E-23 111.8 6.0 82 34-116 42-129 (143)
154 2hgn_A Heterogeneous nuclear r 99.8 2E-19 7E-24 112.7 4.4 82 34-118 43-124 (139)
155 1wg1_A KIAA1579 protein, homol 99.8 3.7E-18 1.3E-22 99.0 9.2 76 36-118 4-79 (88)
156 1l3k_A Heterogeneous nuclear r 99.8 1E-17 3.5E-22 109.6 11.7 84 35-119 102-185 (196)
157 1b7f_A Protein (SXL-lethal pro 99.8 1.3E-17 4.5E-22 106.5 11.9 80 35-114 87-168 (168)
158 1sjr_A Polypyrimidine tract-bi 99.8 8.9E-18 3E-22 107.5 10.6 79 35-117 44-124 (164)
159 4f02_A Polyadenylate-binding p 99.8 8.1E-18 2.8E-22 112.1 10.7 79 36-116 102-180 (213)
160 3md3_A Nuclear and cytoplasmic 99.8 9E-18 3.1E-22 106.9 10.4 80 38-118 1-80 (166)
161 2qfj_A FBP-interacting repress 99.8 6.4E-18 2.2E-22 112.1 9.9 82 36-117 27-108 (216)
162 3beg_B Splicing factor, argini 99.8 2.9E-18 9.9E-23 104.3 7.5 74 35-115 14-92 (115)
163 2dnl_A Cytoplasmic polyadenyla 99.7 7E-18 2.4E-22 102.3 8.4 74 35-111 6-82 (114)
164 2cjk_A Nuclear polyadenylated 99.7 3.9E-18 1.3E-22 109.0 7.6 79 37-116 87-165 (167)
165 3zzy_A Polypyrimidine tract-bi 99.7 2.7E-17 9.4E-22 101.6 11.0 79 35-118 26-107 (130)
166 1fxl_A Paraneoplastic encephal 99.7 2.2E-17 7.5E-22 105.2 11.0 79 36-114 87-167 (167)
167 3tyt_A Heterogeneous nuclear r 99.7 1.2E-17 4.1E-22 110.9 10.1 76 36-116 3-79 (205)
168 2cq2_A Hypothetical protein LO 99.7 1.7E-17 5.7E-22 100.5 9.3 78 35-118 23-107 (114)
169 2hzc_A Splicing factor U2AF 65 99.7 1.6E-17 5.6E-22 95.8 8.6 72 35-113 4-86 (87)
170 2bz2_A Negative elongation fac 99.7 1.8E-17 6.1E-22 101.6 9.1 78 34-119 36-113 (121)
171 2e5i_A Heterogeneous nuclear r 99.7 8.7E-17 3E-21 98.8 12.2 75 38-118 26-103 (124)
172 3nmr_A Cugbp ELAV-like family 99.7 3.6E-17 1.2E-21 105.0 10.9 83 36-118 2-89 (175)
173 2diu_A KIAA0430 protein; struc 99.7 4.1E-17 1.4E-21 94.9 9.6 73 38-120 10-87 (96)
174 3pgw_A U1-A; protein-RNA compl 99.7 5.7E-17 1.9E-21 111.7 11.7 83 33-118 5-91 (282)
175 2voo_A Lupus LA protein; RNA-b 99.7 5.1E-17 1.7E-21 107.0 10.9 80 36-117 108-187 (193)
176 3d2w_A TAR DNA-binding protein 99.7 4E-17 1.4E-21 94.9 9.2 76 33-117 7-84 (89)
177 3nmr_A Cugbp ELAV-like family 99.7 4.9E-17 1.7E-21 104.4 10.3 79 35-114 93-174 (175)
178 2pe8_A Splicing factor 45; RRM 99.7 1.5E-16 5.1E-21 95.2 11.3 81 36-116 7-93 (105)
179 2cjk_A Nuclear polyadenylated 99.7 2.3E-17 7.9E-22 105.4 7.6 78 36-115 2-79 (167)
180 2adc_A Polypyrimidine tract-bi 99.7 5.4E-17 1.8E-21 109.1 9.7 79 34-117 31-110 (229)
181 1fje_B Nucleolin RBD12, protei 99.7 8E-17 2.7E-21 103.7 10.0 77 35-116 97-173 (175)
182 3smz_A Protein raver-1, ribonu 99.7 2.7E-16 9.2E-21 108.4 12.8 83 36-118 94-176 (284)
183 3u1l_A PRE-mRNA-splicing facto 99.7 5.8E-17 2E-21 109.6 8.4 81 34-120 131-232 (240)
184 1wf0_A TDP-43, TAR DNA-binding 99.7 4.5E-17 1.6E-21 94.3 6.5 77 36-119 4-80 (88)
185 2ghp_A U4/U6 snRNA-associated 99.7 1.3E-16 4.6E-21 110.4 9.8 84 33-117 206-291 (292)
186 3pgw_A U1-A; protein-RNA compl 99.7 3.4E-16 1.2E-20 107.8 11.6 77 35-116 205-282 (282)
187 3smz_A Protein raver-1, ribonu 99.7 3.7E-16 1.3E-20 107.8 11.6 83 35-118 182-265 (284)
188 1qm9_A Polypyrimidine tract-bi 99.7 1.3E-16 4.5E-21 104.7 7.6 77 36-117 2-79 (198)
189 1fje_B Nucleolin RBD12, protei 99.7 4.6E-17 1.6E-21 104.9 3.9 84 33-118 9-92 (175)
190 2dit_A HIV TAT specific factor 99.7 3.4E-15 1.2E-19 90.2 11.9 81 35-119 13-104 (112)
191 3sde_A Paraspeckle component 1 99.7 9.6E-16 3.3E-20 104.9 10.5 80 31-116 16-95 (261)
192 3v4m_A Splicing factor U2AF 65 99.6 2.4E-15 8.4E-20 89.9 8.9 81 35-115 3-95 (105)
193 3sde_A Paraspeckle component 1 99.6 3.6E-15 1.2E-19 102.0 10.9 82 36-118 95-180 (261)
194 1qm9_A Polypyrimidine tract-bi 99.6 3.6E-15 1.2E-19 97.8 10.1 77 35-116 118-196 (198)
195 1jmt_A Splicing factor U2AF 35 99.6 2.7E-16 9.4E-21 93.9 4.2 73 42-115 20-104 (104)
196 3tyt_A Heterogeneous nuclear r 99.6 1.6E-15 5.5E-20 100.6 8.3 71 35-107 121-193 (205)
197 2ghp_A U4/U6 snRNA-associated 99.6 2.6E-15 8.7E-20 103.9 9.3 81 36-117 116-197 (292)
198 2adc_A Polypyrimidine tract-bi 99.6 9.1E-15 3.1E-19 98.2 11.1 77 35-116 149-227 (229)
199 2g4b_A Splicing factor U2AF 65 99.6 5.2E-15 1.8E-19 94.8 9.4 76 36-118 3-89 (172)
200 3ue2_A Poly(U)-binding-splicin 99.6 1.5E-14 5E-19 88.2 9.6 80 36-115 19-107 (118)
201 2yh0_A Splicing factor U2AF 65 99.6 1E-14 3.4E-19 95.4 9.2 75 36-117 3-88 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.2E-13 4.1E-18 81.8 11.4 75 37-118 10-91 (100)
203 3tht_A Alkylated DNA repair pr 99.5 2.6E-13 9E-18 96.1 9.4 65 34-104 15-81 (345)
204 3s6e_A RNA-binding protein 39; 99.5 6.5E-13 2.2E-17 80.4 9.7 76 36-115 6-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 8.5E-12 2.9E-16 75.9 8.1 76 34-115 15-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 5.7E-11 1.9E-15 68.4 7.9 71 36-115 6-84 (91)
207 3dxb_A Thioredoxin N-terminall 99.1 2.9E-10 9.9E-15 75.8 8.2 67 49-115 141-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 5E-10 1.7E-14 64.8 6.8 72 35-115 13-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.9 2.2E-08 7.5E-13 59.3 9.6 74 35-114 19-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.2 3.8E-05 1.3E-09 44.9 9.8 70 36-114 7-81 (104)
211 1uw4_A UPF3X; nonsense mediate 97.9 0.00012 4.2E-09 42.0 8.6 70 38-107 2-73 (91)
212 1wey_A Calcipressin 1; structu 97.9 5.5E-05 1.9E-09 44.4 6.8 73 37-115 5-82 (104)
213 1whv_A Poly(A)-specific ribonu 97.9 0.00012 4.3E-09 42.3 8.0 55 37-100 16-70 (100)
214 1wwh_A Nucleoporin 35, nucleop 97.9 0.00011 3.8E-09 44.2 8.0 74 34-115 21-95 (119)
215 3ctr_A Poly(A)-specific ribonu 97.5 0.00017 5.8E-09 41.9 4.9 54 38-100 7-60 (101)
216 3p3d_A Nucleoporin 53; structu 97.2 0.00066 2.3E-08 41.4 4.8 77 37-115 7-97 (132)
217 2l08_A Regulator of nonsense t 96.9 0.0017 5.9E-08 37.6 4.8 71 37-107 9-81 (97)
218 3pq1_A Poly(A) RNA polymerase; 96.6 0.0016 5.4E-08 47.9 3.3 55 37-97 53-107 (464)
219 2kn4_A Immunoglobulin G-bindin 96.3 0.0068 2.3E-07 37.6 4.6 34 67-102 3-36 (158)
220 2i2y_A Fusion protein consists 96.1 0.0026 8.8E-08 39.4 2.0 41 75-116 9-50 (150)
221 3d45_A Poly(A)-specific ribonu 93.8 0.47 1.6E-05 35.3 8.6 56 38-102 441-496 (507)
222 2g0c_A ATP-dependent RNA helic 63.7 14 0.00049 19.4 5.3 59 48-115 12-75 (76)
223 4eyt_A Telomerase associated p 49.2 34 0.0012 19.3 8.2 57 36-100 11-67 (129)
224 1xn9_A 30S ribosomal protein S 39.8 53 0.0018 18.8 5.5 48 47-95 28-80 (101)
225 2v94_A RPS24, 30S ribosomal pr 35.7 65 0.0022 18.6 5.3 47 48-95 38-89 (107)
226 1ywx_A 30S ribosomal protein S 35.4 64 0.0022 18.5 5.6 47 47-94 28-79 (102)
227 3fut_A Dimethyladenosine trans 32.6 51 0.0018 22.1 3.7 31 38-69 111-141 (271)
228 4e8u_A Putative uncharacterize 31.5 1E+02 0.0034 19.5 7.7 57 38-97 13-81 (172)
229 2g1d_A 30S ribosomal protein S 29.3 61 0.0021 18.4 3.1 46 48-94 30-80 (98)
230 3lpe_A Putative transcription 28.3 50 0.0017 18.2 2.6 25 78-102 49-73 (92)
231 3uzu_A Ribosomal RNA small sub 28.3 26 0.00089 23.7 1.6 33 38-70 115-147 (279)
232 4bby_A Alkyldihydroxyacetoneph 26.3 92 0.0031 23.8 4.5 54 45-99 351-408 (658)
233 1qyr_A KSGA, high level kasuga 22.7 76 0.0026 21.0 3.1 30 38-67 91-120 (252)
234 2xzm_P RPS24E; ribosome, trans 22.7 1.4E+02 0.0049 18.3 5.1 46 48-94 32-82 (149)
235 3ftd_A Dimethyladenosine trans 21.0 69 0.0024 21.1 2.6 29 38-66 96-124 (249)
236 4aj5_1 SKA3, spindle and kinet 20.6 41 0.0014 19.2 1.2 11 52-62 91-101 (101)
237 3tqs_A Ribosomal RNA small sub 20.2 32 0.0011 22.9 0.8 31 40-70 99-129 (255)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=5.8e-24 Score=126.48 Aligned_cols=82 Identities=33% Similarity=0.467 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
...+++|||+|||.++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 033146 114 LA 115 (126)
Q Consensus 114 ~~ 115 (126)
++
T Consensus 96 Ak 97 (99)
T 4fxv_A 96 AR 97 (99)
T ss_dssp CC
T ss_pred ee
Confidence 85
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.90 E-value=7e-23 Score=123.95 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++|||+|||+++++++|+++|++||.|..+.+++++.|++++|||||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 033146 115 ARI 117 (126)
Q Consensus 115 ~~~ 117 (126)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 543
No 3
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.90 E-value=2.4e-22 Score=122.25 Aligned_cols=89 Identities=28% Similarity=0.367 Sum_probs=81.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..||+..++|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeccccCCC
Q 033146 113 ALARIINPF 121 (126)
Q Consensus 113 ~~~~~~~~~ 121 (126)
++.......
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 997665443
No 4
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=5.8e-22 Score=117.73 Aligned_cols=86 Identities=27% Similarity=0.349 Sum_probs=79.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
.....+.++|||+|||.++++++|+++|+.||.|..+.+..++ ++..+|+|||+|.+.++|.+|+..|||..++|+.|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3344567899999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred Eeeeccc
Q 033146 111 LHALARI 117 (126)
Q Consensus 111 v~~~~~~ 117 (126)
|+++...
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998643
No 5
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.9e-22 Score=119.62 Aligned_cols=89 Identities=26% Similarity=0.397 Sum_probs=82.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|+|||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34557899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeccccCCC
Q 033146 113 ALARIINPF 121 (126)
Q Consensus 113 ~~~~~~~~~ 121 (126)
++.......
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 997665443
No 6
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=7.3e-22 Score=120.03 Aligned_cols=86 Identities=29% Similarity=0.406 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecccc
Q 033146 113 ALARII 118 (126)
Q Consensus 113 ~~~~~~ 118 (126)
++....
T Consensus 91 ~a~~~~ 96 (115)
T 2dgo_A 91 WATRKP 96 (115)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 986544
No 7
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=5.5e-22 Score=116.65 Aligned_cols=83 Identities=30% Similarity=0.413 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eec
Q 033146 113 ALA 115 (126)
Q Consensus 113 ~~~ 115 (126)
+++
T Consensus 91 ~a~ 93 (95)
T 2cqc_A 91 GPS 93 (95)
T ss_dssp CCS
T ss_pred ecC
Confidence 976
No 8
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.89 E-value=4e-22 Score=118.27 Aligned_cols=85 Identities=25% Similarity=0.304 Sum_probs=78.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 033146 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH--------AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102 (126)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~ 102 (126)
.......++|||+|||.++++++|+++|+.||.|.. +.+..++.+|..+|+|||+|.+.++|.+|+..|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 334455789999999999999999999999999999 999999889999999999999999999999999999
Q ss_pred eecCcEEEEeeec
Q 033146 103 VSLCMASFLHALA 115 (126)
Q Consensus 103 ~~~g~~l~v~~~~ 115 (126)
.++|+.|+|++++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999863
No 9
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=5e-22 Score=116.66 Aligned_cols=82 Identities=23% Similarity=0.364 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..||+..++|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34578999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred ec
Q 033146 114 LA 115 (126)
Q Consensus 114 ~~ 115 (126)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 10
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.89 E-value=5.1e-22 Score=114.08 Aligned_cols=81 Identities=28% Similarity=0.482 Sum_probs=77.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeeccc
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARI 117 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~~ 117 (126)
++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|.+|+..|||..++|+.|+|+++..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999998754
Q ss_pred c
Q 033146 118 I 118 (126)
Q Consensus 118 ~ 118 (126)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 11
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=4e-22 Score=119.52 Aligned_cols=84 Identities=27% Similarity=0.484 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.++|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|||..++|+.|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 44578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eccc
Q 033146 114 LARI 117 (126)
Q Consensus 114 ~~~~ 117 (126)
+...
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8644
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=5e-22 Score=118.91 Aligned_cols=87 Identities=24% Similarity=0.370 Sum_probs=80.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|.+|+..||+..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34457899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeccccC
Q 033146 113 ALARIIN 119 (126)
Q Consensus 113 ~~~~~~~ 119 (126)
++.....
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9865543
No 13
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=120.14 Aligned_cols=87 Identities=23% Similarity=0.292 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34557899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeccccC
Q 033146 113 ALARIIN 119 (126)
Q Consensus 113 ~~~~~~~ 119 (126)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9975543
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=4.7e-22 Score=115.20 Aligned_cols=82 Identities=29% Similarity=0.415 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cc
Q 033146 115 AR 116 (126)
Q Consensus 115 ~~ 116 (126)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 15
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=5.4e-23 Score=120.48 Aligned_cols=85 Identities=20% Similarity=0.340 Sum_probs=76.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CceecCcEEEEeee
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD-GKVSLCMASFLHAL 114 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~-g~~~~g~~l~v~~~ 114 (126)
+.+|||+|||.++++++|+++|+.|| .|..+.+++++.+|.++|||||+|.+.++|.+|++.++ +..++|+.|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 79999999999999999999999999999999999774 56799999999998
Q ss_pred ccccCCC
Q 033146 115 ARIINPF 121 (126)
Q Consensus 115 ~~~~~~~ 121 (126)
..+..+.
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 7555443
No 16
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.88 E-value=5e-23 Score=120.30 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFG--EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
.+|||+|||.++++++|+++|+.|| .|..+.++.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred cccCCC
Q 033146 116 RIINPF 121 (126)
Q Consensus 116 ~~~~~~ 121 (126)
....+.
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 555443
No 17
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.88 E-value=6.5e-22 Score=120.78 Aligned_cols=84 Identities=30% Similarity=0.424 Sum_probs=78.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
....+.++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eeec
Q 033146 112 HALA 115 (126)
Q Consensus 112 ~~~~ 115 (126)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9864
No 18
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.88 E-value=2.7e-21 Score=119.03 Aligned_cols=92 Identities=24% Similarity=0.234 Sum_probs=84.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
.....++|||+|||.++++++|+++|+.||.|..+.+..++ +|..+|+|||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred eeccccCCCCccc
Q 033146 113 ALARIINPFPIFL 125 (126)
Q Consensus 113 ~~~~~~~~~~~~~ 125 (126)
++.....+.|...
T Consensus 110 ~a~~~~~~~~~~~ 122 (124)
T 2kt5_A 110 LVASQIDLEHHHH 122 (124)
T ss_dssp EECCTTCCCCCCC
T ss_pred EeCCCCCCCCCcC
Confidence 9987777666543
No 19
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.88 E-value=5.7e-22 Score=119.51 Aligned_cols=88 Identities=25% Similarity=0.431 Sum_probs=81.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
+....+.++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|+|||+|.+.++|.+|+..|||..++|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33445578999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred Eeeecccc
Q 033146 111 LHALARII 118 (126)
Q Consensus 111 v~~~~~~~ 118 (126)
|+++..+.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99987654
No 20
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=4.6e-22 Score=114.76 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|+|||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred c
Q 033146 115 A 115 (126)
Q Consensus 115 ~ 115 (126)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 21
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=9.8e-22 Score=119.68 Aligned_cols=90 Identities=29% Similarity=0.442 Sum_probs=81.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 30 ~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
....+.+.++|||+|||.++++++|+++|+.||.|..+.+++++.++..+|||||+|.+.++|.+|+..+++ .++|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 334455679999999999999999999999999999999999988999999999999999999999999998 8999999
Q ss_pred EEeeeccccCC
Q 033146 110 FLHALARIINP 120 (126)
Q Consensus 110 ~v~~~~~~~~~ 120 (126)
+|+++.....+
T Consensus 89 ~V~~a~~~~~~ 99 (116)
T 2cqd_A 89 NVNLAYLGAKP 99 (116)
T ss_dssp EEEESTTTCCC
T ss_pred EEEEcccCCCc
Confidence 99998654433
No 22
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=8.6e-22 Score=116.77 Aligned_cols=85 Identities=20% Similarity=0.369 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+. +|+..++|+.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3457899999999999999999999999999999999998899999999999999999999999 999999999999999
Q ss_pred eccccC
Q 033146 114 LARIIN 119 (126)
Q Consensus 114 ~~~~~~ 119 (126)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 865544
No 23
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=7.2e-22 Score=116.19 Aligned_cols=85 Identities=26% Similarity=0.479 Sum_probs=80.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
+.++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|||..++|+.|+|+++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred cccCC
Q 033146 116 RIINP 120 (126)
Q Consensus 116 ~~~~~ 120 (126)
.....
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 66544
No 24
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=9.6e-22 Score=118.00 Aligned_cols=89 Identities=22% Similarity=0.432 Sum_probs=81.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCceecCcEE
Q 033146 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKH-RESGYSKGFGFVKYATLEAAGKAIEGM-DGKVSLCMAS 109 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~al~~l-~g~~~~g~~l 109 (126)
......++|||+|||..+++++|+++|+.||.|..+.++.+ +.++..+|+|||+|.+.++|.+|+..| |+..++|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34456789999999999999999999999999999999988 779999999999999999999999999 9999999999
Q ss_pred EEeeeccccCC
Q 033146 110 FLHALARIINP 120 (126)
Q Consensus 110 ~v~~~~~~~~~ 120 (126)
+|+++......
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999765543
No 25
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.6e-21 Score=117.77 Aligned_cols=87 Identities=22% Similarity=0.313 Sum_probs=80.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CceecC
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD------GKVSLC 106 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~------g~~~~g 106 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|| +..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34457899999999999999999999999999999999999899999999999999999999999999 999999
Q ss_pred cEEEEeeeccccC
Q 033146 107 MASFLHALARIIN 119 (126)
Q Consensus 107 ~~l~v~~~~~~~~ 119 (126)
+.|+|+++.....
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999865543
No 26
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-21 Score=116.10 Aligned_cols=85 Identities=28% Similarity=0.314 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ccccC
Q 033146 115 ARIIN 119 (126)
Q Consensus 115 ~~~~~ 119 (126)
.....
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 65543
No 27
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.88 E-value=3e-22 Score=118.21 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=79.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
+.++|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|||..++|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred cccCC
Q 033146 116 RIINP 120 (126)
Q Consensus 116 ~~~~~ 120 (126)
.....
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 65543
No 28
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=7e-22 Score=117.71 Aligned_cols=86 Identities=24% Similarity=0.398 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|+|||+|.+.++|.+|+..||+..++|+.|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eccccC
Q 033146 114 LARIIN 119 (126)
Q Consensus 114 ~~~~~~ 119 (126)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 865543
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=2.3e-21 Score=116.01 Aligned_cols=87 Identities=23% Similarity=0.356 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC---cEEE
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC---MASF 110 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g---~~l~ 110 (126)
..+.++|||+|||.++++++|+++|+.||.|..+.+..++ ++.++|||||+|.+.++|.+|+..|||..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999997 79999999999999999999999999999988 9999
Q ss_pred EeeeccccCCC
Q 033146 111 LHALARIINPF 121 (126)
Q Consensus 111 v~~~~~~~~~~ 121 (126)
|.++.......
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99997655443
No 30
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=9.8e-22 Score=117.07 Aligned_cols=86 Identities=31% Similarity=0.527 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|.+|+..||+..++|+.|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eccccC
Q 033146 114 LARIIN 119 (126)
Q Consensus 114 ~~~~~~ 119 (126)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 976554
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=118.93 Aligned_cols=83 Identities=11% Similarity=0.221 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC--eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eecCc
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGE--VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK----VSLCM 107 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~--v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~----~~~g~ 107 (126)
...-.+|||+|||+++++++|+++|+.||. +..+.+++++.||.++|||||+|.+.++|.+|++.|||. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345678999999999999999999999995 678999999999999999999999999999999999996 59999
Q ss_pred EEEEeeecc
Q 033146 108 ASFLHALAR 116 (126)
Q Consensus 108 ~l~v~~~~~ 116 (126)
.|.|++++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 32
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.9e-21 Score=116.07 Aligned_cols=86 Identities=34% Similarity=0.550 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.+..+ ++..+|+|||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3446789999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred eeccccCC
Q 033146 113 ALARIINP 120 (126)
Q Consensus 113 ~~~~~~~~ 120 (126)
++.....+
T Consensus 89 ~a~~~~~~ 96 (103)
T 2d9p_A 89 LAQRKEER 96 (103)
T ss_dssp ECSSCCCC
T ss_pred EecccccC
Confidence 99765543
No 33
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.88 E-value=6.4e-22 Score=122.81 Aligned_cols=86 Identities=29% Similarity=0.376 Sum_probs=80.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
....+.++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|+|||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eeeccc
Q 033146 112 HALARI 117 (126)
Q Consensus 112 ~~~~~~ 117 (126)
+++...
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998643
No 34
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=115.81 Aligned_cols=86 Identities=33% Similarity=0.467 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRE---SGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
.+.++|||+|||.++++++|+++|+.||.|..+.+..++. ++..+|+|||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3468899999999999999999999999999999998775 6689999999999999999999999999999999999
Q ss_pred eeeccccCC
Q 033146 112 HALARIINP 120 (126)
Q Consensus 112 ~~~~~~~~~ 120 (126)
+++.....+
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999766554
No 35
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.87 E-value=1.9e-21 Score=112.73 Aligned_cols=81 Identities=28% Similarity=0.440 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|+|||+|.+.++|.+|+. +++..++|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999997 68899999999998
Q ss_pred ee
Q 033146 113 AL 114 (126)
Q Consensus 113 ~~ 114 (126)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 36
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=1.2e-21 Score=118.14 Aligned_cols=85 Identities=21% Similarity=0.391 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34557899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeccc
Q 033146 113 ALARI 117 (126)
Q Consensus 113 ~~~~~ 117 (126)
++...
T Consensus 102 ~a~~~ 106 (110)
T 1oo0_B 102 WCFVK 106 (110)
T ss_dssp ESEES
T ss_pred EcccC
Confidence 98643
No 37
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.7e-21 Score=118.11 Aligned_cols=88 Identities=25% Similarity=0.273 Sum_probs=80.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 033146 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV--------HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV 103 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~ 103 (126)
....+.++|||+|||.++++++|+++|+.||.|. .+.+..++.++..+|||||+|.+.++|.+|+..|||..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3445678999999999999999999999999998 69999998899999999999999999999999999999
Q ss_pred ecCcEEEEeeeccccC
Q 033146 104 SLCMASFLHALARIIN 119 (126)
Q Consensus 104 ~~g~~l~v~~~~~~~~ 119 (126)
+.|+.|+|+++.....
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999865543
No 38
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=115.11 Aligned_cols=85 Identities=15% Similarity=0.195 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 35 EPSTNLFVSGLSKRTTDETLR----DTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
.+.++|||+|||.++++++|+ ++|+.||.|..+.++.++.+ +|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 346899999999999999999 99999999999999988755 88999999999999999999999999999999
Q ss_pred EeeeccccCCCC
Q 033146 111 LHALARIINPFP 122 (126)
Q Consensus 111 v~~~~~~~~~~~ 122 (126)
|+++....++.|
T Consensus 84 V~~a~~~~~~~~ 95 (96)
T 2dgx_A 84 VSLATGASGPSS 95 (96)
T ss_dssp EEECCCSSCCCC
T ss_pred EEEcCCCCCCCC
Confidence 999987777654
No 39
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=4.3e-21 Score=114.53 Aligned_cols=84 Identities=17% Similarity=0.315 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.++|||+|||.++++++|+++|+.|| |..+.++.++.++.++|||||+|.+.++|.+|+ .||+..++|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34578999999999999999999999997 999999999989999999999999999999999 7999999999999999
Q ss_pred eccccC
Q 033146 114 LARIIN 119 (126)
Q Consensus 114 ~~~~~~ 119 (126)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 865543
No 40
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=115.60 Aligned_cols=84 Identities=24% Similarity=0.387 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcE----E
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVV-HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMA----S 109 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~----l 109 (126)
...++|||+|||.++++++|+++|+.||.|. .+.+++++.++.++|||||+|.+.++|.+|+..|||..++|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEeeecccc
Q 033146 110 FLHALARII 118 (126)
Q Consensus 110 ~v~~~~~~~ 118 (126)
+|.++....
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999987544
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.87 E-value=1.5e-21 Score=117.01 Aligned_cols=87 Identities=20% Similarity=0.372 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---cCcEE
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVS---LCMAS 109 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~---~g~~l 109 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..||+..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345578999999999999999999999999999999999988999999999999999999999999999987 89999
Q ss_pred EEeeeccccC
Q 033146 110 FLHALARIIN 119 (126)
Q Consensus 110 ~v~~~~~~~~ 119 (126)
+|+++.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999865543
No 42
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.8e-21 Score=113.37 Aligned_cols=87 Identities=26% Similarity=0.395 Sum_probs=78.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
....+.++|||+|||.++++++|+++|+.||.|..+.++.++. ..+|+|||+|.+.++|.+|+..||+..++|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999998853 38999999999999999999999999999999999
Q ss_pred eeeccccCC
Q 033146 112 HALARIINP 120 (126)
Q Consensus 112 ~~~~~~~~~ 120 (126)
+++......
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 998655543
No 43
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=1e-20 Score=118.47 Aligned_cols=87 Identities=30% Similarity=0.436 Sum_probs=80.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
......++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|+|||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eeecccc
Q 033146 112 HALARII 118 (126)
Q Consensus 112 ~~~~~~~ 118 (126)
+++....
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9986544
No 44
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.5e-22 Score=119.61 Aligned_cols=83 Identities=28% Similarity=0.454 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
+...++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+ .|||..++|+.|+|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999999999988999999999999999999999 8999999999999999
Q ss_pred eccc
Q 033146 114 LARI 117 (126)
Q Consensus 114 ~~~~ 117 (126)
+...
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8543
No 45
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.87 E-value=2e-21 Score=114.27 Aligned_cols=82 Identities=29% Similarity=0.407 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||..+++++|+++|+.||.|..+.+..++. +..+|+|||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 344578999999999999999999999999999999999874 8999999999999999999999999999999999999
Q ss_pred eec
Q 033146 113 ALA 115 (126)
Q Consensus 113 ~~~ 115 (126)
+++
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 875
No 46
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.5e-21 Score=115.02 Aligned_cols=84 Identities=30% Similarity=0.534 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
+.++|||+|||.++++++|+++|+.||.|..+ .++.++.++..+|+|||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 99999889999999999999999999999999999999999999998
Q ss_pred ccccC
Q 033146 115 ARIIN 119 (126)
Q Consensus 115 ~~~~~ 119 (126)
.....
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 65543
No 47
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=2.5e-21 Score=117.84 Aligned_cols=80 Identities=39% Similarity=0.585 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
..++|||+|||.++++++|+++|+.||.|..+.+++++ +.++|||||+|.+.++|.+|+..|||..++|+.|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999885 4479999999999999999999999999999999999975
Q ss_pred cc
Q 033146 116 RI 117 (126)
Q Consensus 116 ~~ 117 (126)
..
T Consensus 82 ~~ 83 (115)
T 4f25_A 82 SR 83 (115)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 48
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.87 E-value=3.9e-21 Score=115.35 Aligned_cols=82 Identities=24% Similarity=0.294 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||..+++++|+++|+.||.|..+.++.++ +|..+|+|||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred eec
Q 033146 113 ALA 115 (126)
Q Consensus 113 ~~~ 115 (126)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 49
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2.6e-21 Score=115.80 Aligned_cols=87 Identities=32% Similarity=0.414 Sum_probs=80.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+.. ++..++|+.|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 445678999999999999999999999999999999999988999999999999999999999997 9999999999999
Q ss_pred eeccccCC
Q 033146 113 ALARIINP 120 (126)
Q Consensus 113 ~~~~~~~~ 120 (126)
++......
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 98655543
No 50
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=124.05 Aligned_cols=81 Identities=28% Similarity=0.355 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFG--EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..++|||+|||+++++++|+++|+.|| .|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 033146 114 LAR 116 (126)
Q Consensus 114 ~~~ 116 (126)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 853
No 51
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.7e-21 Score=114.99 Aligned_cols=82 Identities=15% Similarity=0.320 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRES-GYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
.+.++|||+|||.++++++|+++|+.|| |..+.++.++.+ +..+|||||+|.+.++|.+|+ .||+..++|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999887 999999999999999999999 8999999999999999
Q ss_pred ecccc
Q 033146 114 LARII 118 (126)
Q Consensus 114 ~~~~~ 118 (126)
+....
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 86554
No 52
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.7e-20 Score=113.04 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=77.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
.....+.++|||+|||.++++++|+++|+.||.|..+.+..+ +..+|+|||+|.+.++|.+|+..||+..++|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 334556789999999999999999999999999999998543 45789999999999999999999999999999999
Q ss_pred EeeeccccCC
Q 033146 111 LHALARIINP 120 (126)
Q Consensus 111 v~~~~~~~~~ 120 (126)
|+++.....+
T Consensus 93 V~~a~~~~~~ 102 (109)
T 1x4a_A 93 VEFPRSGRGT 102 (109)
T ss_dssp EECCCCCCCC
T ss_pred EEEcccCCCC
Confidence 9999765544
No 53
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.86 E-value=5.8e-22 Score=117.91 Aligned_cols=81 Identities=26% Similarity=0.372 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-cE
Q 033146 36 PSTNLFVSGLSK------RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC-MA 108 (126)
Q Consensus 36 ~~~~v~v~nlp~------~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g-~~ 108 (126)
..++|||+|||. ++++++|+++|+.||.|..+.+++++.||+++|||||+|.+.++|.+|+..|||..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 367899999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeeecc
Q 033146 109 SFLHALAR 116 (126)
Q Consensus 109 l~v~~~~~ 116 (126)
|+|.++..
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999853
No 54
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-20 Score=112.17 Aligned_cols=86 Identities=20% Similarity=0.304 Sum_probs=77.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
....+.++|||+|||.++++++|+++|+.||.|..+.+..++.+ .+|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34456789999999999999999999999999999999988543 6899999999999999999999999999999999
Q ss_pred eeeccccC
Q 033146 112 HALARIIN 119 (126)
Q Consensus 112 ~~~~~~~~ 119 (126)
+++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99865443
No 55
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=2.3e-21 Score=114.64 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
....++|||+|||.++++++|+++|+.||.|..+.++.++.+|..+|+|||+|.+.++|.+|+..|||..++|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34468899999999999999999999999998888888888999999999999999999999999999999999999999
Q ss_pred ecc
Q 033146 114 LAR 116 (126)
Q Consensus 114 ~~~ 116 (126)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 56
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=3.2e-21 Score=118.89 Aligned_cols=86 Identities=27% Similarity=0.461 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|.+|+..|||..++|+.|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34457899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecccc
Q 033146 113 ALARII 118 (126)
Q Consensus 113 ~~~~~~ 118 (126)
++....
T Consensus 98 ~a~~~~ 103 (126)
T 3ex7_B 98 WCFVRG 103 (126)
T ss_dssp ESEESS
T ss_pred EecCCC
Confidence 986443
No 57
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.86 E-value=8.1e-21 Score=118.84 Aligned_cols=84 Identities=25% Similarity=0.414 Sum_probs=77.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
.....+.++|||+|||..+++++|+++|+.||.|..+.++.++.++..+|+|||+|.+.++|.+|+..|||..++|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33445678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred Eeee
Q 033146 111 LHAL 114 (126)
Q Consensus 111 v~~~ 114 (126)
|+++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9874
No 58
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=4.7e-21 Score=116.85 Aligned_cols=84 Identities=25% Similarity=0.455 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.++|||+|||.++++++|+++|+.||.|..+.+..++ +|..+|||||+|.+.++|.+|+..|||..++|+.|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ecccc
Q 033146 114 LARII 118 (126)
Q Consensus 114 ~~~~~ 118 (126)
+....
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 86544
No 59
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.8e-20 Score=110.97 Aligned_cols=85 Identities=28% Similarity=0.431 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+. +++.++|+.|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 44557899999999999999999999999999999999998899999999999999999999999 5789999999999
Q ss_pred eeccccC
Q 033146 113 ALARIIN 119 (126)
Q Consensus 113 ~~~~~~~ 119 (126)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9865554
No 60
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.86 E-value=5.7e-22 Score=117.92 Aligned_cols=88 Identities=15% Similarity=0.305 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 033146 28 PPQRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHR-ESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC 106 (126)
Q Consensus 28 ~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g 106 (126)
+.........++|||+|||.++++++|+++|+.|| |..+.+..++ .+|+++|+|||+|.+.++|.+|+ .|||..++|
T Consensus 10 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 10 HRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp ----------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred CCCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 34444556689999999999999999999999999 9999999987 58999999999999999999999 799999999
Q ss_pred cEEEEeeeccc
Q 033146 107 MASFLHALARI 117 (126)
Q Consensus 107 ~~l~v~~~~~~ 117 (126)
+.|+|+++...
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999998643
No 61
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.5e-20 Score=113.02 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
....++|||+|||.++++++|+++|+.||.|..+.+..++ ++..+|+|||+|.+.++|.+|+..||+..++|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999999987 689999999999999999999999999999999999998
Q ss_pred ec
Q 033146 114 LA 115 (126)
Q Consensus 114 ~~ 115 (126)
+.
T Consensus 91 a~ 92 (114)
T 2do0_A 91 DE 92 (114)
T ss_dssp CS
T ss_pred cc
Confidence 75
No 62
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=121.37 Aligned_cols=85 Identities=9% Similarity=0.271 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eec
Q 033146 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH--AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK----VSL 105 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~----~~~ 105 (126)
....+.++|||+|||+++++++|+++|+.||.|.. +.+++++.+|.++|||||+|.+. +|.+|+..|||. .++
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 33456789999999999999999999999999966 99999998999999999999999 999999999999 999
Q ss_pred CcEEEEeeeccc
Q 033146 106 CMASFLHALARI 117 (126)
Q Consensus 106 g~~l~v~~~~~~ 117 (126)
|+.|+|+++...
T Consensus 97 gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 GKTINVEFAKGS 108 (131)
T ss_dssp GCCCCCEECCCS
T ss_pred CEEEEEEECCCC
Confidence 999999998544
No 63
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=5.4e-21 Score=114.20 Aligned_cols=84 Identities=26% Similarity=0.377 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-ecCcEEEE
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSA-FGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV-SLCMASFL 111 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~-~~g~~l~v 111 (126)
..+.++|||+|||.++++++|+++|+. ||.|..+.++.++ ++..+|||||+|.+.++|.+|+..||+.. ++|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345689999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred eeecccc
Q 033146 112 HALARII 118 (126)
Q Consensus 112 ~~~~~~~ 118 (126)
+++....
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9985443
No 64
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=6.7e-21 Score=110.69 Aligned_cols=80 Identities=19% Similarity=0.325 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
+.++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+ .+||..++|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3578999999999999999999999999999999999889999999999999999999999 899999999999999986
Q ss_pred c
Q 033146 116 R 116 (126)
Q Consensus 116 ~ 116 (126)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 65
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=1.1e-20 Score=120.65 Aligned_cols=86 Identities=30% Similarity=0.371 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
....++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eccccC
Q 033146 114 LARIIN 119 (126)
Q Consensus 114 ~~~~~~ 119 (126)
+.....
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 975543
No 66
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-21 Score=116.72 Aligned_cols=84 Identities=31% Similarity=0.471 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++|||+|||..+++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cccc
Q 033146 115 ARII 118 (126)
Q Consensus 115 ~~~~ 118 (126)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 6443
No 67
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=1.4e-20 Score=120.05 Aligned_cols=84 Identities=24% Similarity=0.223 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..||+..++|+.|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eccc
Q 033146 114 LARI 117 (126)
Q Consensus 114 ~~~~ 117 (126)
+...
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 9643
No 68
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=6.8e-21 Score=114.94 Aligned_cols=87 Identities=24% Similarity=0.330 Sum_probs=74.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
.....+.++|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|.+|+..+ +..++|+.|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 334456789999999999999999999999999999999999889999999999999999999999965 5999999999
Q ss_pred Eeeecccc
Q 033146 111 LHALARII 118 (126)
Q Consensus 111 v~~~~~~~ 118 (126)
|+++....
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99986443
No 69
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=1.2e-20 Score=110.33 Aligned_cols=84 Identities=29% Similarity=0.325 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++|||+|||.++++++|+++|+.||.|..+.+..+ ++..+|+|||+|.+.++|.+|+..||+..++|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999874 7889999999999999999999999999999999999998
Q ss_pred ccccCC
Q 033146 115 ARIINP 120 (126)
Q Consensus 115 ~~~~~~ 120 (126)
.....+
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 766544
No 70
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=6.4e-21 Score=110.51 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY-SKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
..++|||+|||.++++++|+++|+.||.|..+.+..++.++. .+|+|||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999998877665 8999999999999999999999999999999999998
Q ss_pred cc
Q 033146 115 AR 116 (126)
Q Consensus 115 ~~ 116 (126)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 71
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.2e-21 Score=115.35 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
...++|||+|||.++++++|+++|+.||.|..+.+++++. |.++|||||+|.+.++|.+|+. +++..++|+.|.|.+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3468899999999999999999999999999999999976 9999999999999999999999 9999999999999987
Q ss_pred cc
Q 033146 115 AR 116 (126)
Q Consensus 115 ~~ 116 (126)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 72
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.85 E-value=2.6e-21 Score=119.03 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
+.++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+ .|||..++|+.|+|+++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 799999999999999986
Q ss_pred c
Q 033146 116 R 116 (126)
Q Consensus 116 ~ 116 (126)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 73
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.85 E-value=8.1e-21 Score=116.13 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGE---VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
.....++|||+|||+++++++|+++|+.||. |..+.++.++. |+++|+|||+|.+.++|.+|+. +|+..++|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3455789999999999999999999999998 89999999875 9999999999999999999999 99999999999
Q ss_pred EEeeecc
Q 033146 110 FLHALAR 116 (126)
Q Consensus 110 ~v~~~~~ 116 (126)
+|.++..
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998743
No 74
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.1e-20 Score=107.89 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
....++|||+|||.++++++|+++|+.| .|..+.++++ .+|.++|+|||+|.+.++|.+|+. +||..++|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3457899999999999999999999999 9999999999 689999999999999999999999 999999999999999
Q ss_pred eccc
Q 033146 114 LARI 117 (126)
Q Consensus 114 ~~~~ 117 (126)
+...
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8644
No 75
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.85 E-value=3.8e-21 Score=113.10 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
+.++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|+|||+|.+.++|.+|+..||+..++|+.|+|+.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35899999999999999999999999999888888888899999999999999999999999999999999999999864
No 76
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=2.7e-21 Score=120.87 Aligned_cols=89 Identities=31% Similarity=0.419 Sum_probs=81.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
+...+.++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|+|||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34455789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eeeccccCC
Q 033146 112 HALARIINP 120 (126)
Q Consensus 112 ~~~~~~~~~ 120 (126)
+++.....+
T Consensus 122 ~~a~~~~~~ 130 (135)
T 2lea_A 122 QMARYGRPP 130 (135)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999765543
No 77
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.5e-21 Score=118.58 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
.....++|||+|||+++++++|+++|+.||.|..+.++.+..+|..+|||||+|.+.++|.+||. +|+..++|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34557899999999999999999999999999876556666799999999999999999999999 99999999999999
Q ss_pred eeccc
Q 033146 113 ALARI 117 (126)
Q Consensus 113 ~~~~~ 117 (126)
++...
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98543
No 78
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9e-21 Score=114.39 Aligned_cols=86 Identities=27% Similarity=0.393 Sum_probs=77.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 30 QRPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 30 ~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
......+.++|||+|||.++++++|+++|+.||.|..+.+..++ +..+|+|||+|.+.++|.+|+..|||..++|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 33445567899999999999999999999999999999998885 3489999999999999999999999999999999
Q ss_pred EEeeeccc
Q 033146 110 FLHALARI 117 (126)
Q Consensus 110 ~v~~~~~~ 117 (126)
+|+++..+
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99998643
No 79
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.85 E-value=2.9e-21 Score=108.99 Aligned_cols=75 Identities=27% Similarity=0.387 Sum_probs=71.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
+|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|++ +++..++|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 9999999999999875
No 80
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=2.3e-20 Score=120.08 Aligned_cols=84 Identities=21% Similarity=0.389 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..+.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45577899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eccc
Q 033146 114 LARI 117 (126)
Q Consensus 114 ~~~~ 117 (126)
+...
T Consensus 149 a~~~ 152 (165)
T 1rk8_A 149 CFVK 152 (165)
T ss_dssp SEEC
T ss_pred ecCC
Confidence 8543
No 81
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-21 Score=112.76 Aligned_cols=81 Identities=25% Similarity=0.429 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|.+|+..|||..++|+.+++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999888765
Q ss_pred c
Q 033146 115 A 115 (126)
Q Consensus 115 ~ 115 (126)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 82
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=113.75 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHhhccCCeeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 033146 34 AEPSTNLFVSGLSKRTTDETLR---DTFSAFGEVVHAKIVKHRESG---YSKGFGFVKYATLEAAGKAIEGMDGKVSLCM 107 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~---~~f~~~G~v~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~ 107 (126)
....++|||+|||.++++++|+ ++|+.||.|..+.+..++.++ .++|+|||+|.+.++|.+|+..|||..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999999887644 5569999999999999999999999999999
Q ss_pred EEEEeeecccc
Q 033146 108 ASFLHALARII 118 (126)
Q Consensus 108 ~l~v~~~~~~~ 118 (126)
.|+|+++..+.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999986544
No 83
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=113.89 Aligned_cols=84 Identities=24% Similarity=0.389 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+.. ++..++|+.|+|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3468999999999999999999999999999999999988999999999999999999999996 999999999999998
Q ss_pred ccccC
Q 033146 115 ARIIN 119 (126)
Q Consensus 115 ~~~~~ 119 (126)
.....
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 65543
No 84
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=114.78 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEV-VHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
..+.++|||+|||+++++++|+++|+.||.| ..+.++.++ +|..+|||||+|.+.++|.+|+.. |+..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4457899999999999999999999999999 889999997 999999999999999999999996 9999999999999
Q ss_pred eeccc
Q 033146 113 ALARI 117 (126)
Q Consensus 113 ~~~~~ 117 (126)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98544
No 85
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=111.59 Aligned_cols=83 Identities=20% Similarity=0.163 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH-AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
....++|||+|||+++++++|+++|+.||.|.. +.++.+ .+|+++|+|||+|.+.++|.+|+.. ++..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999987 888888 6899999999999999999999996 9999999999999
Q ss_pred eecccc
Q 033146 113 ALARII 118 (126)
Q Consensus 113 ~~~~~~ 118 (126)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 886544
No 86
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=112.23 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 033146 34 AEPSTNLFVSGLSKRT------TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCM 107 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~------~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~ 107 (126)
....++|||+|||..+ ++++|+++|+.||.|..+.++ +.+|.++|||||+|.+.++|.+|+..|||..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446899999999999 789999999999999999988 35889999999999999999999999999999999
Q ss_pred -EEEEeeecccc
Q 033146 108 -ASFLHALARII 118 (126)
Q Consensus 108 -~l~v~~~~~~~ 118 (126)
.|+|.++....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999986543
No 87
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=113.06 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=78.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceecCcEEEE
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGE-VVHAKIV-KHRESGYSKGFGFVKYATLEAAGKAIEGMD--GKVSLCMASFL 111 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~-v~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--g~~~~g~~l~v 111 (126)
+.++|||+|||.++++++|+++|+.||. |..+.++ .++.+|..+|||||+|.+.++|.+|+..|+ +..++|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4689999999999999999999999998 9999998 787888999999999999999999999996 58999999999
Q ss_pred eeeccccCC
Q 033146 112 HALARIINP 120 (126)
Q Consensus 112 ~~~~~~~~~ 120 (126)
+++.....+
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999766554
No 88
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.84 E-value=6e-20 Score=119.50 Aligned_cols=85 Identities=26% Similarity=0.292 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
...++|||+|||..+++++|+++|+.||.|..+.+..++ ++..+|+|||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 446799999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred ccccCC
Q 033146 115 ARIINP 120 (126)
Q Consensus 115 ~~~~~~ 120 (126)
......
T Consensus 165 ~~~~~~ 170 (177)
T 2f3j_A 165 ASQIDL 170 (177)
T ss_dssp SSGGGG
T ss_pred cCCCCC
Confidence 755543
No 89
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=5.5e-20 Score=109.28 Aligned_cols=84 Identities=27% Similarity=0.376 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.| .++.+ .++..+|+|||+|.+.++|.+|+..||+..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44567999999999999999999999999987 45555 588999999999999999999999999999999999999
Q ss_pred eeccccCC
Q 033146 113 ALARIINP 120 (126)
Q Consensus 113 ~~~~~~~~ 120 (126)
++.....+
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 98655443
No 90
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.8e-20 Score=110.60 Aligned_cols=83 Identities=25% Similarity=0.458 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--------
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVS-------- 104 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~-------- 104 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.++.++ ++..+|||||+|.+.++|.+|+..|||..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999997 899999999999999999999999999998
Q ss_pred cCcEEEEeeecc
Q 033146 105 LCMASFLHALAR 116 (126)
Q Consensus 105 ~g~~l~v~~~~~ 116 (126)
.++.|.|.++..
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 577899988763
No 91
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.84 E-value=1.4e-21 Score=113.91 Aligned_cols=82 Identities=27% Similarity=0.415 Sum_probs=73.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeeccc
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARI 117 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~~ 117 (126)
++|||+|||.++++++|+++|+.||.|..+.+.+++.+|.++|+|||+|.+.+ |.+|+..|||..++|+.|+|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999889999999999999999 99999999999999999999998765
Q ss_pred cCC
Q 033146 118 INP 120 (126)
Q Consensus 118 ~~~ 120 (126)
..+
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 92
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=5.1e-21 Score=108.37 Aligned_cols=76 Identities=28% Similarity=0.419 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
++|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..++ ..++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999988 9999999999885
No 93
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=108.03 Aligned_cols=84 Identities=39% Similarity=0.514 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.|+ .+.++.++.++..+|||||+|.+.++|.+|+..||+..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678999999999999999999999774 67778887899999999999999999999999999999999999999
Q ss_pred eeccccC
Q 033146 113 ALARIIN 119 (126)
Q Consensus 113 ~~~~~~~ 119 (126)
++.....
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9865543
No 94
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-21 Score=115.02 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|++ |||..+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3445789999999999999999999999998876 556666688899999999999999999999 99999999999999
Q ss_pred eecccc
Q 033146 113 ALARII 118 (126)
Q Consensus 113 ~~~~~~ 118 (126)
++....
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 986543
No 95
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=110.95 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceecCcEEEEe
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG--KVSLCMASFLH 112 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g--~~~~g~~l~v~ 112 (126)
.+.++|||+|||+++++++|+++|+.||.|..+.++++ +|||||+|.+.++|.+|+..+++ ..+.|+.|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34689999999999999999999999999999999764 68999999999999999998864 68999999999
Q ss_pred eecccc
Q 033146 113 ALARII 118 (126)
Q Consensus 113 ~~~~~~ 118 (126)
++..+.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 986544
No 96
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=5.3e-20 Score=113.80 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 34 AEPSTNLFVSGLSKRTTDETLR----DTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
..+.++|||+|||+.+++++|+ ++|++||.|..+.+. .++..+|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 689999999988774 367889999999999999999999999999999999
Q ss_pred EEeeecccc
Q 033146 110 FLHALARII 118 (126)
Q Consensus 110 ~v~~~~~~~ 118 (126)
+|.++....
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999987544
No 97
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=107.38 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
.....++|||+|||.++++++|+++|+.||.|. +.++.+ ..+|||||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344578999999999999999999999999996 566543 478999999999999999999999999999999999
Q ss_pred eeccc
Q 033146 113 ALARI 117 (126)
Q Consensus 113 ~~~~~ 117 (126)
++...
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98654
No 98
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-19 Score=106.03 Aligned_cols=77 Identities=27% Similarity=0.357 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec--CcEEEEe
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL--CMASFLH 112 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~--g~~l~v~ 112 (126)
.+.++|||+|||.++++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|+..||+..++ |+.|+|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 44689999999999999999999999999999988643 679999999999999999999999999 9999999
Q ss_pred eeccc
Q 033146 113 ALARI 117 (126)
Q Consensus 113 ~~~~~ 117 (126)
++...
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98654
No 99
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.83 E-value=2.5e-20 Score=116.51 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGE---VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
.....++|||+|||+++++++|+++|+.||. |..+.+++++. |+++|||||+|.+.++|.+|+. +|+..++|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3455789999999999999999999999999 88999999976 9999999999999999999999 99999999999
Q ss_pred EEeeecc
Q 033146 110 FLHALAR 116 (126)
Q Consensus 110 ~v~~~~~ 116 (126)
+|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998753
No 100
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.4e-20 Score=109.45 Aligned_cols=82 Identities=21% Similarity=0.166 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
....++|||+|||+++++++|+++|+.||.+ .+.++.++ +++++|+|||+|.+.++|.+||. +|+..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999955 99999997 89999999999999999999996 899999999999998
Q ss_pred ecccc
Q 033146 114 LARII 118 (126)
Q Consensus 114 ~~~~~ 118 (126)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 76443
No 101
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-20 Score=113.08 Aligned_cols=87 Identities=22% Similarity=0.247 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45789999999999999999999999999843222222127889999999999999999999999999999999999999
Q ss_pred ccccCCC
Q 033146 115 ARIINPF 121 (126)
Q Consensus 115 ~~~~~~~ 121 (126)
.......
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpx_A 103 KNKKQRS 109 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCCC
Confidence 7655443
No 102
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-19 Score=107.84 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-----cEE
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC-----MAS 109 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g-----~~l 109 (126)
...++|||+|||.++++++|+++|+.||.|..+.++.+ |+|||+|.+.++|.+|++.||+..++| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999765 799999999999999999999999999 999
Q ss_pred EEeeecccc
Q 033146 110 FLHALARII 118 (126)
Q Consensus 110 ~v~~~~~~~ 118 (126)
+|+++....
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999986443
No 103
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=105.46 Aligned_cols=78 Identities=23% Similarity=0.391 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++|||+|||.++++++|+++|+.||.|..+.+. +|+|||+|.+.++|.+|+..||+..++|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 457899999999999999999999999999999986 569999999999999999999999999999999999
Q ss_pred ccccCC
Q 033146 115 ARIINP 120 (126)
Q Consensus 115 ~~~~~~ 120 (126)
......
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 765544
No 104
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.5e-20 Score=110.95 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
....+|||+|||+++++++|+++|+.| .|..+.++.++. |+++|+|||+|.+.++|.+|+ .+|+..++|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 346799999999999999999999999 899999999874 999999999999999999999 49999999999999887
Q ss_pred cc
Q 033146 115 AR 116 (126)
Q Consensus 115 ~~ 116 (126)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 43
No 105
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=107.07 Aligned_cols=79 Identities=20% Similarity=0.160 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceecCcEEEE
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM--DGKVSLCMASFL 111 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l--~g~~~~g~~l~v 111 (126)
..+.++|||+|||+++++++|+++|+.||.|..+.++++ +|+|||+|.+.++|.+|+..| ++..+.|+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345789999999999999999999999999999988754 689999999999999999976 567899999999
Q ss_pred eeecccc
Q 033146 112 HALARII 118 (126)
Q Consensus 112 ~~~~~~~ 118 (126)
.++....
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9986544
No 106
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=103.80 Aligned_cols=77 Identities=26% Similarity=0.359 Sum_probs=70.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceecCcEEEE
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM-DGKVSLCMASFL 111 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-~g~~~~g~~l~v 111 (126)
.+...++|||+|||..+++++|+++|+.||.|..+.+.++ +|+|||+|.+.++|.+|+..| ++..++|+.|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3455789999999999999999999999999999998763 689999999999999999998 999999999999
Q ss_pred eeec
Q 033146 112 HALA 115 (126)
Q Consensus 112 ~~~~ 115 (126)
++++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 107
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=3.7e-20 Score=124.91 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFG--EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..++|||+||++++++++|+++|+.|| .|..+.|++++.+++++|||||+|.+.++|.+||..||+..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ec
Q 033146 114 LA 115 (126)
Q Consensus 114 ~~ 115 (126)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 108
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.82 E-value=1.7e-19 Score=120.15 Aligned_cols=82 Identities=21% Similarity=0.327 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++|||+|||.++++++|+++|+.||.|..+.+++++.+++++|+|||+|.+.++|.+|+..+|+..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 033146 115 AR 116 (126)
Q Consensus 115 ~~ 116 (126)
..
T Consensus 93 ~~ 94 (213)
T 4f02_A 93 QR 94 (213)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 109
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=1.2e-19 Score=109.25 Aligned_cols=79 Identities=28% Similarity=0.381 Sum_probs=71.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
....+.++|||+|||.++++++|+++|+.||.|..+.+. +|+|||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345567899999999999999999999999999999886 679999999999999999999999999999999
Q ss_pred eeecccc
Q 033146 112 HALARII 118 (126)
Q Consensus 112 ~~~~~~~ 118 (126)
+++....
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9986543
No 110
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.82 E-value=7e-19 Score=115.30 Aligned_cols=84 Identities=23% Similarity=0.480 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
....++|||+|||..+++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|||..++|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eccc
Q 033146 114 LARI 117 (126)
Q Consensus 114 ~~~~ 117 (126)
+...
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8644
No 111
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=107.62 Aligned_cols=79 Identities=14% Similarity=0.218 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eecCcEEEEe
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK--VSLCMASFLH 112 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~--~~~g~~l~v~ 112 (126)
.+.++|||+|||+++++++|+++|++||.|..+.++++ +|+|||+|.+.++|.+|+..|++. .+.|+.|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999988653 689999999999999999988654 5999999999
Q ss_pred eeccccC
Q 033146 113 ALARIIN 119 (126)
Q Consensus 113 ~~~~~~~ 119 (126)
++..+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9965543
No 112
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=2.6e-19 Score=105.82 Aligned_cols=79 Identities=20% Similarity=0.390 Sum_probs=69.8
Q ss_pred CCCCCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcE
Q 033146 30 QRPQAEPSTNLFVSGLSK-RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMA 108 (126)
Q Consensus 30 ~~~~~~~~~~v~v~nlp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~ 108 (126)
......+.++|||+|||. ++++++|+++|+.||.|..+.+. +|+|||+|.+.++|.+|+..|||..++|+.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 333445678999999998 99999999999999999999882 679999999999999999999999999999
Q ss_pred EEEeeecc
Q 033146 109 SFLHALAR 116 (126)
Q Consensus 109 l~v~~~~~ 116 (126)
|+|++++.
T Consensus 87 l~V~~a~~ 94 (97)
T 2xnq_A 87 LILEVSSS 94 (97)
T ss_dssp CEEEECCC
T ss_pred EEEEecCC
Confidence 99999864
No 113
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=108.37 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eecCcEEEE
Q 033146 35 EPSTNLFVSGLSK-RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK--VSLCMASFL 111 (126)
Q Consensus 35 ~~~~~v~v~nlp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~--~~~g~~l~v 111 (126)
.+.++|||+|||+ ++++++|+++|+.||.|..+.++++ +|+|||+|.+.++|.+|+..||+. .+.|+.|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 9999999999999999999999765 469999999999999999988864 599999999
Q ss_pred eeeccccC
Q 033146 112 HALARIIN 119 (126)
Q Consensus 112 ~~~~~~~~ 119 (126)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99975543
No 114
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.3e-19 Score=103.75 Aligned_cols=79 Identities=28% Similarity=0.424 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.++|||+|||.++++++|+++|+.||.|..+.+.+ ++|||+|.+.++|.+|+..|||..++|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 44578999999999999999999999999999999863 3999999999999999999999999999999999
Q ss_pred eccccCC
Q 033146 114 LARIINP 120 (126)
Q Consensus 114 ~~~~~~~ 120 (126)
+......
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9765543
No 115
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-20 Score=111.99 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGE---VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
.....++|||+|||+++++++|+++|+.||. |..+.++.++. |+++|+|||+|.+.++|.+|+. +|+..++|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999988 89999999876 9999999999999999999999 99999999999
Q ss_pred EEeeecc
Q 033146 110 FLHALAR 116 (126)
Q Consensus 110 ~v~~~~~ 116 (126)
+|.++..
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9998753
No 116
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=1.9e-20 Score=105.58 Aligned_cols=75 Identities=25% Similarity=0.412 Sum_probs=71.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 39 NLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 39 ~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
+|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+. +++..++|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999999 5999999999998864
No 117
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.81 E-value=3.5e-20 Score=106.10 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=67.3
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc-EE
Q 033146 37 STNLFVSGLSKRT------TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCM-AS 109 (126)
Q Consensus 37 ~~~v~v~nlp~~~------~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~-~l 109 (126)
+++|||+|||..+ ++++|+++|+.||.|..+.+. +.+|.++|+|||+|.+.++|.+|+..|||..++|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 679999999999999999987 35889999999999999999999999999999999 87
Q ss_pred EE
Q 033146 110 FL 111 (126)
Q Consensus 110 ~v 111 (126)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 118
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=106.38 Aligned_cols=80 Identities=25% Similarity=0.306 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||..+++++|+++|+.||.|..+.+.++ +|+|||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3445789999999999999999999999999999998744 6799999999999999999999999999999999
Q ss_pred eecccc
Q 033146 113 ALARII 118 (126)
Q Consensus 113 ~~~~~~ 118 (126)
++....
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 987554
No 119
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.5e-19 Score=104.16 Aligned_cols=74 Identities=24% Similarity=0.288 Sum_probs=69.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeecc
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALAR 116 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~ 116 (126)
..-|+|+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|+..||+..+.|+.|+|+.+.+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 56799999999999999999999999999999854 589999999999999999999999999999999998853
No 120
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.4e-19 Score=112.30 Aligned_cols=82 Identities=28% Similarity=0.484 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+..+|+|+|||..+++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|||..++|+.|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 44577999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ec
Q 033146 114 LA 115 (126)
Q Consensus 114 ~~ 115 (126)
++
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 121
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=106.72 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
....+.++|||+|||..+++++|+++|+.||.|..+ ..++..+|+|||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999988765 247889999999999999999999999999999999999
Q ss_pred eeecccc
Q 033146 112 HALARII 118 (126)
Q Consensus 112 ~~~~~~~ 118 (126)
+++....
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9986443
No 122
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.4e-19 Score=107.27 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
....++|||+|||..+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|+..|||..++|+.|+|++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999765 67999999999999999999999999999999999
Q ss_pred eccccCC
Q 033146 114 LARIINP 120 (126)
Q Consensus 114 ~~~~~~~ 120 (126)
+.....+
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9765543
No 123
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=109.50 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceecCcEEEE
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG--KVSLCMASFL 111 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g--~~~~g~~l~v 111 (126)
..+.++|||+|||+++++++|+++|+.||.|..+.++++ +|+|||+|.+.++|.+|+..+++ ..+.|+.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345789999999999999999999999999999998865 68999999999999999998874 5899999999
Q ss_pred eeecccc
Q 033146 112 HALARII 118 (126)
Q Consensus 112 ~~~~~~~ 118 (126)
.++..+.
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 9986444
No 124
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=105.83 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--ecCcEEE
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV--SLCMASF 110 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~--~~g~~l~ 110 (126)
...++.+|||+|||.++++++|+++|++||.|..+.+++ .+|+|||+|.+.++|.+|+..|++.. +.|+.|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 344678999999999999999999999999999998874 36799999999999999999999875 7899999
Q ss_pred Eeeecccc
Q 033146 111 LHALARII 118 (126)
Q Consensus 111 v~~~~~~~ 118 (126)
|+.++.+.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99987543
No 125
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.81 E-value=6.1e-20 Score=109.28 Aligned_cols=81 Identities=27% Similarity=0.403 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
....++|||+|||.++++++|+++|+.||.|..+.++.++ +|..+|+|||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 99999999999999999999999 99999999999988
Q ss_pred eccc
Q 033146 114 LARI 117 (126)
Q Consensus 114 ~~~~ 117 (126)
+...
T Consensus 83 a~~~ 86 (102)
T 2xs2_A 83 AIRK 86 (102)
T ss_dssp EEEC
T ss_pred CCcC
Confidence 7533
No 126
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=2.1e-19 Score=108.69 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
..++|||+|||+++++++|+++|+.|| .|..+.+.. +.++|||||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 899888753 247899999999999999999999999999999999998
Q ss_pred cc
Q 033146 115 AR 116 (126)
Q Consensus 115 ~~ 116 (126)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 127
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=1.2e-19 Score=106.92 Aligned_cols=82 Identities=18% Similarity=0.348 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 34 AEPSTNLFVSGLSKRTTDETLR----DTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
..+.++|||+|||.++++++|+ ++|+.||.|..+.+.. +|..+|+|||+|.+.++|.+|+..|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3457899999999999999999 9999999999998863 56788999999999999999999999999999999
Q ss_pred EEeeecccc
Q 033146 110 FLHALARII 118 (126)
Q Consensus 110 ~v~~~~~~~ 118 (126)
+|+++....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999986543
No 128
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.5e-19 Score=104.36 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
...++|||+|||.++++++|+++|+.||.|..+ .++.++.++ .|||+|.+.++|.+|+..|||..++|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346889999999999999999999999999999 587776443 399999999999999999999999999999999
Q ss_pred ecccc
Q 033146 114 LARII 118 (126)
Q Consensus 114 ~~~~~ 118 (126)
+....
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 87653
No 129
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.80 E-value=5.6e-19 Score=112.98 Aligned_cols=83 Identities=25% Similarity=0.352 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
+.++|||+|||.++++++|+++|+.||.|..+.+.+++.+|.++|+|||+|.+.++|.+|+..++|..++|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred ccc
Q 033146 116 RII 118 (126)
Q Consensus 116 ~~~ 118 (126)
...
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 544
No 130
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=5.4e-19 Score=107.28 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
...++|||+|||..+++++|+++|+.||.|..+.++.+ +..+|+|||+|.+.++|.+|+..|||..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34689999999999999999999999999999999865 345899999999999999999999999999999999998
Q ss_pred cc
Q 033146 115 AR 116 (126)
Q Consensus 115 ~~ 116 (126)
..
T Consensus 83 ~~ 84 (115)
T 3lqv_A 83 NA 84 (115)
T ss_dssp CH
T ss_pred cC
Confidence 53
No 131
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.80 E-value=8e-19 Score=111.95 Aligned_cols=82 Identities=30% Similarity=0.436 Sum_probs=77.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeecc
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALAR 116 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~ 116 (126)
.++|||+|||.++++++|+++|+.||.|..+.+.+++.+|.++|+|||+|.+.++|.+|+..|+|..+.|+.|+|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999999864
Q ss_pred cc
Q 033146 117 II 118 (126)
Q Consensus 117 ~~ 118 (126)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.1e-19 Score=106.05 Aligned_cols=76 Identities=21% Similarity=0.180 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
...++|||+|||.++++++|+++|+.||.|..+.+. ..+|+|||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 346899999999999999999999999999999886 25789999999999999999999999999999999998
Q ss_pred cc
Q 033146 115 AR 116 (126)
Q Consensus 115 ~~ 116 (126)
+.
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 133
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-18 Score=101.74 Aligned_cols=78 Identities=22% Similarity=0.337 Sum_probs=70.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAF--GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
...+.++|||+|||..+++++|+++|+.| |.|..+.+. +|+|||+|.+.++|.+|+..|||..++|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34457899999999999999999999999 889888763 56999999999999999999999999999999
Q ss_pred Eeeecccc
Q 033146 111 LHALARII 118 (126)
Q Consensus 111 v~~~~~~~ 118 (126)
|+++....
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99986544
No 134
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=8.8e-19 Score=116.25 Aligned_cols=88 Identities=18% Similarity=0.355 Sum_probs=81.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
...++|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|||..++|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccccCCCC
Q 033146 115 ARIINPFP 122 (126)
Q Consensus 115 ~~~~~~~~ 122 (126)
.....+.+
T Consensus 203 ~~~~~~~~ 210 (216)
T 2qfj_A 203 VTPPMPLL 210 (216)
T ss_dssp SSCSSTTS
T ss_pred cCCCCCCC
Confidence 76655543
No 135
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=101.60 Aligned_cols=77 Identities=23% Similarity=0.312 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.++|||+|||.++++++|+++|+.||.|..+.+.+ ++|||+|.+.++|.+|+..|||..++|+.|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999863 3999999999999999999999999999999999
Q ss_pred ecccc
Q 033146 114 LARII 118 (126)
Q Consensus 114 ~~~~~ 118 (126)
+....
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86554
No 136
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=1.9e-18 Score=102.99 Aligned_cols=77 Identities=27% Similarity=0.349 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.++|||+|||.++++++|+++|+.||.|..+.++ +++|||+|.+.++|.+|+..||+..++|+.|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999885 34999999999999999999999999999999999
Q ss_pred ecccc
Q 033146 114 LARII 118 (126)
Q Consensus 114 ~~~~~ 118 (126)
+....
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 85444
No 137
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-19 Score=107.92 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++|||+|||.++++++|+++|+.||.|..+.+.. .+|+|||+|.+.++|.+|+..|||..++|+.|+|+|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3467999999999999999999999999999988863 4679999999999999999999999999999999998
Q ss_pred cccc
Q 033146 115 ARII 118 (126)
Q Consensus 115 ~~~~ 118 (126)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 6543
No 138
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.5e-18 Score=100.84 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=70.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|+ ++++++|+++|+.||.|..+.+. ..+|+|||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3445789999996 89999999999999999999884 357899999999999999999999999999999999
Q ss_pred eeccccC
Q 033146 113 ALARIIN 119 (126)
Q Consensus 113 ~~~~~~~ 119 (126)
++.....
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9865544
No 139
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=1.4e-18 Score=104.68 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 36 PSTNLFVSGLSKR-TTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 36 ~~~~v~v~nlp~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
..++|||+|||.+ +++++|+++|+.||.|..+.+ .+|+|||+|.+.++|.+|+..||+..++|+.|+|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999988 4679999999999999999999999999999999998
Q ss_pred cccc
Q 033146 115 ARII 118 (126)
Q Consensus 115 ~~~~ 118 (126)
....
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6443
No 140
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.79 E-value=1.9e-19 Score=111.12 Aligned_cols=82 Identities=22% Similarity=0.197 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCee--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVV--HAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
.....++|||+|||+++++++|+++|+.| .|. .+.++.++. |+++|||||+|.+.++|.+|+. +++..++|+.|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 33457889999999999999999999999 666 899999876 9999999999999999999999 588999999999
Q ss_pred Eeeeccc
Q 033146 111 LHALARI 117 (126)
Q Consensus 111 v~~~~~~ 117 (126)
|.++...
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887543
No 141
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.2e-19 Score=106.31 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceecCcEEE
Q 033146 34 AEPSTNLFVSGLSKR-TTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG--KVSLCMASF 110 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g--~~~~g~~l~ 110 (126)
..+.++|||+|||++ +++++|+++|+.||.|..+.+++ .+|+|||+|.+.++|.+|+..|++ ..+.|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999998 99999999999999999999864 368999999999999999998864 569999999
Q ss_pred EeeeccccCC
Q 033146 111 LHALARIINP 120 (126)
Q Consensus 111 v~~~~~~~~~ 120 (126)
|.++......
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999766543
No 142
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.79 E-value=1.7e-18 Score=111.12 Aligned_cols=79 Identities=24% Similarity=0.512 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
...+|+|+|||.++++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|||..++|+.|.|+++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3688999999999999999999999999999999999889999999999999999999999999999999999999986
No 143
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=1.3e-18 Score=126.98 Aligned_cols=83 Identities=23% Similarity=0.383 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
.+.++|||+|||..+++++|+.+|+.||.|..|.|+.++.++..+|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ccc
Q 033146 115 ARI 117 (126)
Q Consensus 115 ~~~ 117 (126)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 643
No 144
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=1.4e-18 Score=113.75 Aligned_cols=84 Identities=30% Similarity=0.448 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|+|||+|.+.++|.+|+. .++..++|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeee
Confidence 34457899999999999999999999999999999999998899999999999999999999998 49999999999999
Q ss_pred eeccc
Q 033146 113 ALARI 117 (126)
Q Consensus 113 ~~~~~ 117 (126)
++...
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 98543
No 145
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=1e-18 Score=110.68 Aligned_cols=81 Identities=16% Similarity=0.314 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 32 PQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 32 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
......++|||+|||.++++++|+++|+.||.|..+.++.+ ++|||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999776 5789999999999999999999999999999999
Q ss_pred eeeccc
Q 033146 112 HALARI 117 (126)
Q Consensus 112 ~~~~~~ 117 (126)
+++...
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998643
No 146
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=101.70 Aligned_cols=79 Identities=19% Similarity=0.250 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
..++|||+|||.++++++|+++|+.||.|..+ +.++.++. ||||+|.+.++|.+|+. |||..++|+.|.|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 35799999999999999999999999999987 55555555 99999999999999999 99999999999999986
Q ss_pred cccCC
Q 033146 116 RIINP 120 (126)
Q Consensus 116 ~~~~~ 120 (126)
.....
T Consensus 81 ~~~~~ 85 (94)
T 2e5g_A 81 QKEFQ 85 (94)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 55443
No 147
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=6.7e-21 Score=115.99 Aligned_cols=84 Identities=26% Similarity=0.318 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVH--------AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC 106 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g 106 (126)
.+.++|||+|||.++++++|+++|+.||.|.. +.+..++.++..+|||||+|.+.++|.+|+..|||..++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45688999999999999999999999999988 8899888889999999999999999999999999999999
Q ss_pred cEEEEeeecccc
Q 033146 107 MASFLHALARII 118 (126)
Q Consensus 107 ~~l~v~~~~~~~ 118 (126)
+.|+|+++....
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999986544
No 148
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=105.91 Aligned_cols=76 Identities=24% Similarity=0.403 Sum_probs=70.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeeccc
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARI 117 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~~ 117 (126)
++|||+|||.++++++|+++|+.||.|..+.+..+ .+|+|||+|.+.++|.+|+..|||..++|+.|+|+++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 6889999999999999999999999999999999998544
Q ss_pred c
Q 033146 118 I 118 (126)
Q Consensus 118 ~ 118 (126)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 149
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=8.6e-19 Score=103.30 Aligned_cols=79 Identities=23% Similarity=0.452 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 34 AEPSTNLFVSGLSK-RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 34 ~~~~~~v~v~nlp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
..+.++|||+|||. .+++++|+++|+.||.|..+.+. +|+|||+|.+.++|.+|+..|||..+.|+.|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34578999999998 99999999999999999999883 6799999999999999999999999999999999
Q ss_pred eeccccCC
Q 033146 113 ALARIINP 120 (126)
Q Consensus 113 ~~~~~~~~ 120 (126)
++.....+
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 98655443
No 150
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.6e-19 Score=109.48 Aligned_cols=79 Identities=20% Similarity=0.120 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEV----VHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
.+.++|||+|||+++++++|+++|+.||.| ..+.++.+ .+|+++|+|||+|.+.++|.+|+.. |+..++|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999975 68899888 4899999999999999999999995 99999999999
Q ss_pred Eeeec
Q 033146 111 LHALA 115 (126)
Q Consensus 111 v~~~~ 115 (126)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98774
No 151
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=102.14 Aligned_cols=78 Identities=21% Similarity=0.228 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceecCcEEEEe
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGE-VVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG-KVSLCMASFLH 112 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~-v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g-~~~~g~~l~v~ 112 (126)
.+.++|||+|||.++++++|+++|+.||. +..+.+. .+|+|||+|.+.++|.+|+..||| ..++|+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 35689999999999999999999999999 5555552 467999999999999999999999 99999999999
Q ss_pred eeccccC
Q 033146 113 ALARIIN 119 (126)
Q Consensus 113 ~~~~~~~ 119 (126)
++.....
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9865543
No 152
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.78 E-value=8e-19 Score=107.57 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=70.4
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCce
Q 033146 38 TNLFVSGL----SKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT----LEA----AGKAIE--GMDGKV 103 (126)
Q Consensus 38 ~~v~v~nl----p~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~al~--~l~g~~ 103 (126)
..|||+|| |+.+++.+|+.+|+.||+|.++.++.|+.||.++|||||+|.+ .+. |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999995 323 788888 789999
Q ss_pred ecCcEEEEeeec
Q 033146 104 SLCMASFLHALA 115 (126)
Q Consensus 104 ~~g~~l~v~~~~ 115 (126)
++|+.|+|.--.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998643
No 153
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=3.9e-19 Score=111.77 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE------EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHA------KIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCM 107 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~------~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~ 107 (126)
..+.++|||+|||..+++++|+++|+.||.|..+ .+.. ..+|..+|||||+|.+.++|.+|+..|||..++|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 3456899999999999999999999999988653 1111 23688999999999999999999999999999999
Q ss_pred EEEEeeecc
Q 033146 108 ASFLHALAR 116 (126)
Q Consensus 108 ~l~v~~~~~ 116 (126)
.|+|.++..
T Consensus 121 ~l~V~~a~~ 129 (143)
T 3egn_A 121 PMVVQFARS 129 (143)
T ss_dssp ECEEEECCC
T ss_pred EEEEEECCC
Confidence 999999854
No 154
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=2e-19 Score=112.72 Aligned_cols=82 Identities=21% Similarity=0.169 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
....++|||+|||+++++++|+++|+.|| +..+.++.++. ++++|||||+|.+.++|.+|| .+|+..++|+.|+|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999 66999999975 999999999999999999999 6999999999999988
Q ss_pred ecccc
Q 033146 114 LARII 118 (126)
Q Consensus 114 ~~~~~ 118 (126)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 75443
No 155
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=3.7e-18 Score=99.05 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
..++|||+|||.++++++|+++|+.| .|..+.+. ..+|+|||+|.+.++|.+|+..|||..++|+.|+|++++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99888874 478999999999999999999999999999999999986
Q ss_pred ccc
Q 033146 116 RII 118 (126)
Q Consensus 116 ~~~ 118 (126)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 544
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=1e-17 Score=109.58 Aligned_cols=84 Identities=21% Similarity=0.367 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
...++|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+.. +|..++|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 4468999999999999999999999999999999999988999999999999999999999995 899999999999998
Q ss_pred ccccC
Q 033146 115 ARIIN 119 (126)
Q Consensus 115 ~~~~~ 119 (126)
..+..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 65443
No 157
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=1.3e-17 Score=106.53 Aligned_cols=80 Identities=26% Similarity=0.493 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC--cEEEEe
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC--MASFLH 112 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g--~~l~v~ 112 (126)
...++|+|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|||..++| +.|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 346899999999999999999999999999999999998899999999999999999999999999999988 999998
Q ss_pred ee
Q 033146 113 AL 114 (126)
Q Consensus 113 ~~ 114 (126)
++
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 158
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=8.9e-18 Score=107.45 Aligned_cols=79 Identities=20% Similarity=0.216 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC--cEEEEe
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC--MASFLH 112 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g--~~l~v~ 112 (126)
....+|||+||++.+++++|+++|+.||.|.++.+..+. .+|+|||+|.+.++|.+|++.|||..+.| +.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 335679999999999999999999999999999986542 57899999999999999999999999965 999999
Q ss_pred eeccc
Q 033146 113 ALARI 117 (126)
Q Consensus 113 ~~~~~ 117 (126)
+++..
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 98654
No 159
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=8.1e-18 Score=112.06 Aligned_cols=79 Identities=38% Similarity=0.589 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
...+|||+|||..+++++|+++|+.||.|..+.++++. +..+|+|||+|.+.++|.+|+..|||..++|+.|+|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35689999999999999999999999999999999884 4479999999999999999999999999999999999985
Q ss_pred c
Q 033146 116 R 116 (126)
Q Consensus 116 ~ 116 (126)
.
T Consensus 180 ~ 180 (213)
T 4f02_A 180 S 180 (213)
T ss_dssp C
T ss_pred C
Confidence 3
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=9e-18 Score=106.94 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=73.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeeccc
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALARI 117 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~~ 117 (126)
++|||+|||.++++++|+++|+.||.|..+.+..++ ++.++|+|||+|.+.++|.+|+..++|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999886 5779999999999999999999999999999999999998544
Q ss_pred c
Q 033146 118 I 118 (126)
Q Consensus 118 ~ 118 (126)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 161
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=6.4e-18 Score=112.05 Aligned_cols=82 Identities=23% Similarity=0.321 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
..++|||+|||.++++++|+++|+.||.|..+.+++++.++..+|+|||+|.+.++|.+|+..||+..++|+.|+|.+..
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred cc
Q 033146 116 RI 117 (126)
Q Consensus 116 ~~ 117 (126)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 162
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=2.9e-18 Score=104.26 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=65.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcE-----E
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMA-----S 109 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~-----l 109 (126)
...++|||+|||.++++++|+++|+.||.|..+.++.+ |||||+|.+.++|.+|+..|||..++|+. +
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34689999999999999999999999999999998654 79999999999999999999999999998 6
Q ss_pred EEeeec
Q 033146 110 FLHALA 115 (126)
Q Consensus 110 ~v~~~~ 115 (126)
+|....
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 666653
No 163
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=102.34 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRES---GYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
...++|||+|||.++++++|+++|+.||.|. +.++.++.+ |+++|||||+|.+.++|.+|+..|++ ++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 3468899999999999999999999999999 888777666 79999999999999999999998832 44444433
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=3.9e-18 Score=109.01 Aligned_cols=79 Identities=20% Similarity=0.406 Sum_probs=75.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeecc
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALAR 116 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~~ 116 (126)
..+|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+. ++|..++|+.|+|.++..
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5689999999999999999999999999999999998899999999999999999999998 899999999999999863
No 165
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=2.7e-17 Score=101.64 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceecC--cEEEE
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF-GFVKYATLEAAGKAIEGMDGKVSLC--MASFL 111 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~al~~l~g~~~~g--~~l~v 111 (126)
.....|||+||++.+++++|+++|+.||.|.++.+..+ .+|+ |||+|.+.++|.+|+..|||..+.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34567889999999999999999999999999988764 2577 9999999999999999999999988 88999
Q ss_pred eeecccc
Q 033146 112 HALARII 118 (126)
Q Consensus 112 ~~~~~~~ 118 (126)
++++...
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9986543
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=2.2e-17 Score=105.22 Aligned_cols=79 Identities=29% Similarity=0.562 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcE--EEEee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMA--SFLHA 113 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~--l~v~~ 113 (126)
...+|+|+|||..+++++|+++|+.||.|..+.+..+..+|.++|+|||+|.+.++|.+|+..|||..++|+. |+|.+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4678999999999999999999999999999999999889999999999999999999999999999999975 78776
Q ss_pred e
Q 033146 114 L 114 (126)
Q Consensus 114 ~ 114 (126)
+
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 167
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.74 E-value=1.2e-17 Score=110.87 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=70.7
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 36 PSTNLFVSGLS-KRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 36 ~~~~v~v~nlp-~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
++++|||+||| ..+++++|+++|+.||.|..+.++.+ .+|+|||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 89999999999999999999999765 3789999999999999999999999999999999988
Q ss_pred cc
Q 033146 115 AR 116 (126)
Q Consensus 115 ~~ 116 (126)
+.
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 168
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=100.50 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=68.2
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-----cCc
Q 033146 35 EPSTNLFV--SGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVS-----LCM 107 (126)
Q Consensus 35 ~~~~~v~v--~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~-----~g~ 107 (126)
.+..+||| +||++++++++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|+..|||..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34678999 77999999999999999999999988753 368999999999999999999999988 688
Q ss_pred EEEEeeecccc
Q 033146 108 ASFLHALARII 118 (126)
Q Consensus 108 ~l~v~~~~~~~ 118 (126)
.|.|..+....
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 89998876443
No 169
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=1.6e-17 Score=95.83 Aligned_cols=72 Identities=22% Similarity=0.427 Sum_probs=65.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAF----G-------EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV 103 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~ 103 (126)
.+.++|||+|||.++++++|+++|+.| | .|..+.+.++ +|+|||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346899999999999999999999999 8 8998888644 689999999999999999 899999
Q ss_pred ecCcEEEEee
Q 033146 104 SLCMASFLHA 113 (126)
Q Consensus 104 ~~g~~l~v~~ 113 (126)
++|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 170
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=1.8e-17 Score=101.64 Aligned_cols=78 Identities=22% Similarity=0.375 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
..+.++|||+|+ ++++++|+++|+.||.|..+.+. ..+|||||+|.+.++|.+|+..|||..++|+.|+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999996 69999999999999999999885 3678999999999999999999999999999999999
Q ss_pred eccccC
Q 033146 114 LARIIN 119 (126)
Q Consensus 114 ~~~~~~ 119 (126)
+.....
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 875543
No 171
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=8.7e-17 Score=98.83 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=66.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceecC--cEEEEeee
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGF-GFVKYATLEAAGKAIEGMDGKVSLC--MASFLHAL 114 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~al~~l~g~~~~g--~~l~v~~~ 114 (126)
..|||+||++.+++++|+++|+.||.|.++.+... .|+ |||+|.+.++|.+|+..|||..+.| +.|+|+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999998642 275 9999999999999999999999987 58999998
Q ss_pred cccc
Q 033146 115 ARII 118 (126)
Q Consensus 115 ~~~~ 118 (126)
+...
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 6554
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=3.6e-17 Score=105.05 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceec---CcEEE
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESG--YSKGFGFVKYATLEAAGKAIEGMDGKVSL---CMASF 110 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~al~~l~g~~~~---g~~l~ 110 (126)
+.++|||+|||.++++++|+++|+.||.|..+.+++++.++ .++|+|||+|.+.++|.+|+..|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998776 89999999999999999999999998765 56777
Q ss_pred Eeeecccc
Q 033146 111 LHALARII 118 (126)
Q Consensus 111 v~~~~~~~ 118 (126)
+.+.....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 77765443
No 173
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.1e-17 Score=94.88 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=64.9
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 38 TNLFVSGLSKRTTDET----LRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~----l~~~f~~~G-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
+.|||+|||+++++++ |+++|+.|| .|..+ ++ |+|||.|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 4499999999999987 558999995 99876 33 899999999999999999999999999999999
Q ss_pred eeccccCC
Q 033146 113 ALARIINP 120 (126)
Q Consensus 113 ~~~~~~~~ 120 (126)
.++..++.
T Consensus 80 ~A~~~sd~ 87 (96)
T 2diu_A 80 FTPKNREL 87 (96)
T ss_dssp SSCCSCCC
T ss_pred ecCCCcce
Confidence 99776654
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.73 E-value=5.7e-17 Score=111.73 Aligned_cols=83 Identities=18% Similarity=0.352 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcE
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLR----DTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMA 108 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~ 108 (126)
...+.++|||+|||.++++++|+ ++|+.||.|..+.+.+ +++.+|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34557899999999999999976 8999999999998875 6778999999999999999999999999999999
Q ss_pred EEEeeecccc
Q 033146 109 SFLHALARII 118 (126)
Q Consensus 109 l~v~~~~~~~ 118 (126)
|+|.++....
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999986544
No 175
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.73 E-value=5.1e-17 Score=106.96 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
..++|||+|||.++++++|+++|+.||.|..+.+.++. ++..+|+|||+|.+.++|.+|+..+ +..++|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35889999999999999999999999999999999885 6899999999999999999999855 569999999999986
Q ss_pred cc
Q 033146 116 RI 117 (126)
Q Consensus 116 ~~ 117 (126)
..
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 54
No 176
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=4e-17 Score=94.95 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=62.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--ecCcEEE
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV--SLCMASF 110 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~--~~g~~l~ 110 (126)
...+.++|||+|||+++++++|+++|++||.|.++.++++ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3455789999999999999999999999999999998764 68999999999999883 45554 5699999
Q ss_pred Eeeeccc
Q 033146 111 LHALARI 117 (126)
Q Consensus 111 v~~~~~~ 117 (126)
|.++...
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9988543
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.72 E-value=4.9e-17 Score=104.41 Aligned_cols=79 Identities=27% Similarity=0.479 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec---CcEEEE
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL---CMASFL 111 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~---g~~l~v 111 (126)
....+|||+|||..+++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..|||..+. ++.|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356789999999999999999999999999999999985 6899999999999999999999999998665 489999
Q ss_pred eee
Q 033146 112 HAL 114 (126)
Q Consensus 112 ~~~ 114 (126)
.++
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 886
No 178
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.72 E-value=1.5e-16 Score=95.25 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHHhhccCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 36 PSTNLFVSGLSK-----RTTDETLRDTFSAFGEVVHAKIVKHRES-GYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 36 ~~~~v~v~nlp~-----~~~~~~l~~~f~~~G~v~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
+.++|+|.|+.. +-.+++|++.|++||.|..+.+.+++.+ +.++|++||+|.+.++|.+|+..|||..++|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 467899999963 2368899999999999999999988643 6889999999999999999999999999999999
Q ss_pred EEeeecc
Q 033146 110 FLHALAR 116 (126)
Q Consensus 110 ~v~~~~~ 116 (126)
.|..+..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9998853
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=2.3e-17 Score=105.38 Aligned_cols=78 Identities=26% Similarity=0.463 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
+.++|||+|||.++++++|+++|+.||.|..+.+++++.+|.++|+|||+|.+.++|.+|+.. +..++|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 467999999999999999999999999999999999988999999999999999999999994 678999999888764
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.71 E-value=5.4e-17 Score=109.15 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 34 AEPSTNLFVSGLSK-RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 34 ~~~~~~v~v~nlp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
..+.++|||+|||. ++++++|+++|+.||.|..+.+.+++ +|+|||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999998774 7899999999999999999999999999999999
Q ss_pred eeccc
Q 033146 113 ALARI 117 (126)
Q Consensus 113 ~~~~~ 117 (126)
++...
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 88644
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.71 E-value=8e-17 Score=103.73 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
...++|||+|||..+++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 457899999999999999999999999988765 457889999999999999999999999999999999999998
Q ss_pred cc
Q 033146 115 AR 116 (126)
Q Consensus 115 ~~ 116 (126)
..
T Consensus 172 ~~ 173 (175)
T 1fje_B 172 GE 173 (175)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.71 E-value=2.7e-16 Score=108.44 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
..++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|+|||+|.+.++|.+|+..|+|..++|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred ccc
Q 033146 116 RII 118 (126)
Q Consensus 116 ~~~ 118 (126)
...
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 554
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=5.8e-17 Score=109.60 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 033146 34 AEPSTNLFVSGLSKRT---------TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVS 104 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~---------~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~ 104 (126)
....++|||+||+..+ ++++|+++|+.||.|..+.++. .+|+|||+|.+.++|..|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 7999999999999999999875 378999999999999999999999999
Q ss_pred ------------cCcEEEEeeeccccCC
Q 033146 105 ------------LCMASFLHALARIINP 120 (126)
Q Consensus 105 ------------~g~~l~v~~~~~~~~~ 120 (126)
.|+.|.|.|+....+|
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eccccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876665
No 184
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=94.33 Aligned_cols=77 Identities=23% Similarity=0.349 Sum_probs=65.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
..++|||+|||.++++++|+++|+.||.|..+.++.+ ++|||||+|.+.++|++++. ....+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4689999999999999999999999999999998754 68899999999999986533 2346699999999986
Q ss_pred cccC
Q 033146 116 RIIN 119 (126)
Q Consensus 116 ~~~~ 119 (126)
....
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=1.3e-16 Score=110.35 Aligned_cols=84 Identities=14% Similarity=0.290 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 33 QAEPSTNLFVSGLSKR-TTDETLRDTFSAFGEVVHAKIVKHRE-SGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~-~~~~~l~~~f~~~G~v~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
.....++|||+|||.. +++++|+++|+.||.|..+.++.+.. ||.++|+|||+|.+.++|.+|+ .|||..++|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3455789999999999 99999999999999999999998865 5899999999999999999999 9999999999999
Q ss_pred Eeeeccc
Q 033146 111 LHALARI 117 (126)
Q Consensus 111 v~~~~~~ 117 (126)
|.++..+
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9998643
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=3.4e-16 Score=107.83 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcEEEEee
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL-CMASFLHA 113 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~-g~~l~v~~ 113 (126)
.+.++|||+|||.++++++|+++|+.||.|..+.+..++ +|+|||+|.+.++|.+|+..|||..++ |+.|+|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 456889999999999999999999999999999998653 589999999999999999999999999 99999999
Q ss_pred ecc
Q 033146 114 LAR 116 (126)
Q Consensus 114 ~~~ 116 (126)
+++
T Consensus 280 akk 282 (282)
T 3pgw_A 280 AKK 282 (282)
T ss_pred ecC
Confidence 863
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.69 E-value=3.7e-16 Score=107.76 Aligned_cols=83 Identities=23% Similarity=0.141 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEee
Q 033146 35 EPSTNLFVSGLSKRT-TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHA 113 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~-~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~ 113 (126)
...++|||+|||..+ ++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..|||..++|+.|+|.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 457889999999995 999999999999999999999886 899999999999999999999999999999999999999
Q ss_pred ecccc
Q 033146 114 LARII 118 (126)
Q Consensus 114 ~~~~~ 118 (126)
+....
T Consensus 261 a~~~~ 265 (284)
T 3smz_A 261 CAPGP 265 (284)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 86543
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=104.72 Aligned_cols=77 Identities=23% Similarity=0.255 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 36 PSTNLFVSGLSK-RTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 36 ~~~~v~v~nlp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
++++|||+|||. ++++++|+++|+.||.|..+.+..++ +|+|||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999998764 779999999999999999999999999999999998
Q ss_pred ccc
Q 033146 115 ARI 117 (126)
Q Consensus 115 ~~~ 117 (126)
...
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 644
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=4.6e-17 Score=104.87 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEe
Q 033146 33 QAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLH 112 (126)
Q Consensus 33 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~ 112 (126)
...+.++|||+|||.++++++|+++|..||.+.. .++.+..++.++|+|||+|.+.++|.+|++ |||..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3455789999999999999999999999997655 233344578889999999999999999995 99999999999999
Q ss_pred eecccc
Q 033146 113 ALARII 118 (126)
Q Consensus 113 ~~~~~~ 118 (126)
++....
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 986543
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-15 Score=90.15 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCC-----------HHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 033146 35 EPSTNLFVSGLSKRTT-----------DETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKV 103 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~-----------~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~ 103 (126)
.+..+|+|.||..... +++|+++|++||.|..+.+ .++ ..+|+|||+|.+.++|.+|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3478899999944332 5799999999999999965 443 278999999999999999999999999
Q ss_pred ecCcEEEEeeeccccC
Q 033146 104 SLCMASFLHALARIIN 119 (126)
Q Consensus 104 ~~g~~l~v~~~~~~~~ 119 (126)
++|+.|+|.++....+
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999865443
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.66 E-value=9.6e-16 Score=104.88 Aligned_cols=80 Identities=23% Similarity=0.372 Sum_probs=71.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 31 RPQAEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 31 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
.....+.++|||+|||.++++++|+++|+.||.|..+.+.++ +|+|||+|.+.++|.+|+..++|..+.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 334456789999999999999999999999999999988543 68999999999999999999999999999999
Q ss_pred Eeeecc
Q 033146 111 LHALAR 116 (126)
Q Consensus 111 v~~~~~ 116 (126)
|.++..
T Consensus 90 v~~a~~ 95 (261)
T 3sde_A 90 IRFATH 95 (261)
T ss_dssp EEECCC
T ss_pred eeeccc
Confidence 998754
No 192
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.63 E-value=2.4e-15 Score=89.93 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=69.3
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHhhccCCeeEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCc
Q 033146 35 EPSTNLFVSGL--SKRTT--------DETLRDTFSAFGEVVHAKIVKHRES--GYSKGFGFVKYATLEAAGKAIEGMDGK 102 (126)
Q Consensus 35 ~~~~~v~v~nl--p~~~~--------~~~l~~~f~~~G~v~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~al~~l~g~ 102 (126)
.+.+.|.+.|+ |.++. +++|++.|++||.|.++.+++++.+ +.++|++||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34678889988 33443 3689999999999999999888654 367899999999999999999999999
Q ss_pred eecCcEEEEeeec
Q 033146 103 VSLCMASFLHALA 115 (126)
Q Consensus 103 ~~~g~~l~v~~~~ 115 (126)
.++|+.|+|..+.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999874
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.63 E-value=3.6e-15 Score=102.03 Aligned_cols=82 Identities=29% Similarity=0.406 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceec---CcEEEE
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDG-KVSL---CMASFL 111 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g-~~~~---g~~l~v 111 (126)
+..+|||+|||..+++++|+++|+.||.|..+.++.+ .+|.++|+|||+|.+.++|.+|+..||+ ..+. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3578999999999999999999999999999999999 5899999999999999999999999954 4444 999999
Q ss_pred eeecccc
Q 033146 112 HALARII 118 (126)
Q Consensus 112 ~~~~~~~ 118 (126)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9985443
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=3.6e-15 Score=97.79 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcEEEEe
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL-CMASFLH 112 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~-g~~l~v~ 112 (126)
.+.++|+|+|||..+++++|+++|+.|| .|..+.+..+ .+|+|||+|.+.++|.+|+..|||..++ |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999998654 2689999999999999999999999999 9999999
Q ss_pred eecc
Q 033146 113 ALAR 116 (126)
Q Consensus 113 ~~~~ 116 (126)
+++.
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9863
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.62 E-value=2.7e-16 Score=93.94 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=62.6
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 42 VSGLSKRTTDETLRDTF------------SAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 42 v~nlp~~~~~~~l~~~f------------~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
+.||+..+++++|++.| ++||.|..+.+.++. ++.++|+|||+|.+.++|.+|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 44566666777666666 999999999999875 57889999999999999999999999999999999
Q ss_pred EEeeec
Q 033146 110 FLHALA 115 (126)
Q Consensus 110 ~v~~~~ 115 (126)
+|.+++
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 998763
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=1.6e-15 Score=100.63 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=64.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe--eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFGEV--VHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCM 107 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~ 107 (126)
.+..+|||+|||+++++++|+++|+.||.| ..+.+..+. +..+|+|||+|.+.++|.+|+..|||..+.|.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 346789999999999999999999999998 888887764 45579999999999999999999999999887
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.62 E-value=2.6e-15 Score=103.91 Aligned_cols=81 Identities=14% Similarity=0.237 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHAL 114 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~ 114 (126)
..++|||+|||..+++++|+++|+.|| .|..+.++.++ .|..+|+|||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 99999998886 4788999999999999999999999999999999999997
Q ss_pred ccc
Q 033146 115 ARI 117 (126)
Q Consensus 115 ~~~ 117 (126)
...
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 533
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=9.1e-15 Score=98.23 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcEEEEe
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAFG-EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL-CMASFLH 112 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~-g~~l~v~ 112 (126)
.+.++|||+|||.++++++|+++|+.|| .|..+.+..+ .+|+|||+|.+.++|.+|+..|||..++ |+.|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4468999999999999999999999999 9999998653 3679999999999999999999999999 9999999
Q ss_pred eecc
Q 033146 113 ALAR 116 (126)
Q Consensus 113 ~~~~ 116 (126)
+++.
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9863
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=5.2e-15 Score=94.80 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=66.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAF----G-------EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVS 104 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~ 104 (126)
+.++|||+|||.++++++|+++|+.| | .|..+.+. ..+|+|||+|.+.++|.+|+ .+||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 66666553 34789999999999999999 7999999
Q ss_pred cCcEEEEeeecccc
Q 033146 105 LCMASFLHALARII 118 (126)
Q Consensus 105 ~g~~l~v~~~~~~~ 118 (126)
+|+.|+|.+.....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999986554
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.59 E-value=1.5e-14 Score=88.21 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCC--CC---CHHHHHHHhhccCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 033146 36 PSTNLFVSGLSK--RT---TDETLRDTFSAFGEVVHAKIVKHRE----SGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC 106 (126)
Q Consensus 36 ~~~~v~v~nlp~--~~---~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g 106 (126)
+.++|+|.|+-. ++ .+++|++.|++||.|..+.+.+++. ++.++|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899999842 22 3689999999999999999988754 45778999999999999999999999999999
Q ss_pred cEEEEeeec
Q 033146 107 MASFLHALA 115 (126)
Q Consensus 107 ~~l~v~~~~ 115 (126)
+.|.|..+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.58 E-value=1e-14 Score=95.40 Aligned_cols=75 Identities=21% Similarity=0.380 Sum_probs=64.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAF----G-------EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVS 104 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~ 104 (126)
..++|||+|||.++++++|+++|+.| | .|..+.+ +..+|+|||+|.+.++|.+|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 36899999999999999999999999 4 4555544 345789999999999999999 7999999
Q ss_pred cCcEEEEeeeccc
Q 033146 105 LCMASFLHALARI 117 (126)
Q Consensus 105 ~g~~l~v~~~~~~ 117 (126)
.|+.|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998654
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-13 Score=81.81 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=61.9
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 37 STNLFVSGLS-------KRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 37 ~~~v~v~nlp-------~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
..+|.|.-.. ..+++++|+++|++||.|..+.++ +..+|||||+|.+.++|.+|+..+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4556665433 458999999999999999999987 35789999999999999999997554 679999
Q ss_pred EEeeecccc
Q 033146 110 FLHALARII 118 (126)
Q Consensus 110 ~v~~~~~~~ 118 (126)
+|+|+....
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999986554
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.47 E-value=2.6e-13 Score=96.06 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=57.7
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 033146 34 AEPSTNLFVSG--LSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVS 104 (126)
Q Consensus 34 ~~~~~~v~v~n--lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~ 104 (126)
..+..+|||+| |+..+++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34568899999 578999999999999999999887643 468999999999999999999999977
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.47 E-value=6.5e-13 Score=80.41 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=63.6
Q ss_pred CCCeEEEcCCCCCC----------CHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 033146 36 PSTNLFVSGLSKRT----------TDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL 105 (126)
Q Consensus 36 ~~~~v~v~nlp~~~----------~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~ 105 (126)
+.+.|.+.|+=..- .+++|++.|++||.|..+.+.++. .+|++||+|.+.++|.+|+..|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45678888873321 125789999999999999986653 5899999999999999999999999999
Q ss_pred CcEEEEeeec
Q 033146 106 CMASFLHALA 115 (126)
Q Consensus 106 g~~l~v~~~~ 115 (126)
|+.|.|..+.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999874
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=8.5e-12 Score=75.95 Aligned_cols=76 Identities=18% Similarity=0.122 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CceecCcEE
Q 033146 34 AEPSTNLFVSGLSKR-TTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYAT-LEAAGKAIEGMD--GKVSLCMAS 109 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~al~~l~--g~~~~g~~l 109 (126)
-..++.|+|+||+.. ++.++|+++|+.||+|..|.+.++.. .|||.|.+ ..+|..++..++ +..+.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 345789999999999 99999999999999999999987753 59999999 899999999995 678888888
Q ss_pred EEeeec
Q 033146 110 FLHALA 115 (126)
Q Consensus 110 ~v~~~~ 115 (126)
.++...
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887653
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=5.7e-11 Score=68.44 Aligned_cols=71 Identities=23% Similarity=0.315 Sum_probs=59.4
Q ss_pred CCCeEEEcCCCC----CCCH----HHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 033146 36 PSTNLFVSGLSK----RTTD----ETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCM 107 (126)
Q Consensus 36 ~~~~v~v~nlp~----~~~~----~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~ 107 (126)
+..+|+|.-.+. .+-+ .+|...|..||.|..+++..++ +||+|.+.++|.+|+. |||..++|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 456777776552 2333 5789999999999999998763 8999999999999999 999999999
Q ss_pred EEEEeeec
Q 033146 108 ASFLHALA 115 (126)
Q Consensus 108 ~l~v~~~~ 115 (126)
.|+|..++
T Consensus 77 ~LkV~lkt 84 (91)
T 2dnr_A 77 TITIALKS 84 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99999875
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.12 E-value=2.9e-10 Score=75.83 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=59.4
Q ss_pred CCHHHHHHHhhccCCeeEEEEeecC----CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 49 TTDETLRDTFSAFGEVVHAKIVKHR----ESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 49 ~~~~~l~~~f~~~G~v~~~~~~~~~----~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
-.+++|.+.|++||.|..+.+.++. .++..+|++||+|.+.++|.+|+..|||..++||.|.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3567899999999999999998554 345889999999999999999999999999999999998764
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=5e-10 Score=64.82 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=60.1
Q ss_pred CCCCeEEEcCCCCC------CCH---HHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 033146 35 EPSTNLFVSGLSKR------TTD---ETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSL 105 (126)
Q Consensus 35 ~~~~~v~v~nlp~~------~~~---~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~ 105 (126)
++..+|+|.-++.. ..+ .+|.+.|..||.|..+++..++ +||+|.+.++|.+|+. |+|..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 44678888877632 232 5688999999999999998773 9999999999999999 9999999
Q ss_pred CcEEEEeeec
Q 033146 106 CMASFLHALA 115 (126)
Q Consensus 106 g~~l~v~~~~ 115 (126)
|+.|+|....
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.92 E-value=2.2e-08 Score=59.27 Aligned_cols=74 Identities=11% Similarity=0.043 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEE
Q 033146 35 EPSTNLFVSGLSKRTTDETLRDTFSAF-----GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMAS 109 (126)
Q Consensus 35 ~~~~~v~v~nlp~~~~~~~l~~~f~~~-----G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l 109 (126)
++.++|-+-|||..+++..|+.+.+.+ |.+..+.+..+- +-|+|+|.+...|.+|.-.|+|..++|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 446788899999999999999999999 999999987763 359999999999999998899999999999
Q ss_pred EEeee
Q 033146 110 FLHAL 114 (126)
Q Consensus 110 ~v~~~ 114 (126)
++--+
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98654
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=3.8e-05 Score=44.94 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=57.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc---c--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEE
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSA---F--GEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASF 110 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~---~--G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~ 110 (126)
...+|.|.|||..+.++.|.-+|+. . |+|..+.... +-|+|+|.+...+++.|. -..+.+++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 3678999999999999999999986 2 4677777643 368999999999999998 347788888888
Q ss_pred Eeee
Q 033146 111 LHAL 114 (126)
Q Consensus 111 v~~~ 114 (126)
|.+.
T Consensus 78 V~P~ 81 (104)
T 2dhx_A 78 LRPA 81 (104)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 8775
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.95 E-value=0.00012 Score=42.05 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=56.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGY--SKGFGFVKYATLEAAGKAIEGMDGKVSLCM 107 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~al~~l~g~~~~g~ 107 (126)
++|.|.+||+.++++++.+.+.....+....++..+.+.+ .-.-|+|.|.+.+++......++|+.+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5789999999999999999999888776666665543322 346799999999999999999999976443
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=5.5e-05 Score=44.40 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=59.5
Q ss_pred CCeEEEcCCCCCC-CH----HHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEE
Q 033146 37 STNLFVSGLSKRT-TD----ETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFL 111 (126)
Q Consensus 37 ~~~v~v~nlp~~~-~~----~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v 111 (126)
.++++|+||+.++ .. +.++++|..|++.....+.+.- + -..|.|.+.++|.+|-..||+..+.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4679999998865 32 4678889999998777766542 2 3679999999999999999999999999999
Q ss_pred eeec
Q 033146 112 HALA 115 (126)
Q Consensus 112 ~~~~ 115 (126)
.-+.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 8764
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.90 E-value=0.00012 Score=42.34 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=45.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 100 (126)
.+.++| ++|.++...||..+|+.||.| .|.++-|- .|||.|.+.+.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 455666 999999999999999999954 46666663 79999999999999998663
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.90 E-value=0.00011 Score=44.21 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=58.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-cEEEEe
Q 033146 34 AEPSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLC-MASFLH 112 (126)
Q Consensus 34 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g-~~l~v~ 112 (126)
..+.+-|.|-++|... ...+...|++||.|.+..... ...+-.|.|.+..+|++||. .||..++| -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3446778899999985 566778999999998877621 23388999999999999999 79999975 667787
Q ss_pred eec
Q 033146 113 ALA 115 (126)
Q Consensus 113 ~~~ 115 (126)
+..
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 753
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.54 E-value=0.00017 Score=41.90 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=45.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 100 (126)
+.++| ++|.++...+|..+|+.|| -..|.++-|- .|||.|.+.+.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999 4457776663 79999999999999998764
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.20 E-value=0.00066 Score=41.43 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=55.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeec------------CCCC-CcceEEEEEeCCHHHHHHHHHHhCCc
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVH-AKIVKH------------RESG-YSKGFGFVKYATLEAAGKAIEGMDGK 102 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~-~~~~~~------------~~~~-~~~g~~fv~f~~~~~a~~al~~l~g~ 102 (126)
..-|.|-++|.+.. ..+.+.|++||.|.+ ....+. +..+ ....+-.|.|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45677888977655 456678999999865 221110 0000 123477899999999999999 8999
Q ss_pred eecCcEEEEeeec
Q 033146 103 VSLCMASFLHALA 115 (126)
Q Consensus 103 ~~~g~~l~v~~~~ 115 (126)
.++|..|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988998874
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.94 E-value=0.0017 Score=37.59 Aligned_cols=71 Identities=13% Similarity=0.064 Sum_probs=49.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESG--YSKGFGFVKYATLEAAGKAIEGMDGKVSLCM 107 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~ 107 (126)
.-+|.|..||+.++++++.+.+...-.+....++..+.+. ..-.-|+|.|.+.++...-.+.++|..+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 4579999999999999977777655443222222222221 1224689999999999999999999976443
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.56 E-value=0.0016 Score=47.87 Aligned_cols=55 Identities=13% Similarity=0.306 Sum_probs=40.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 033146 37 STNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIE 97 (126)
Q Consensus 37 ~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~ 97 (126)
.+.|+|. .|...++.+|.+.|++||+|..+.+-.++ | -|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 4679997 79999999999999999999988775542 2 499999999999887765
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.26 E-value=0.0068 Score=37.63 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=27.3
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 033146 67 AKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102 (126)
Q Consensus 67 ~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~ 102 (126)
+.+..+. ...+|++||+|.+.++|++|+..+++.
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 4555654 358999999999999999999887753
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.08 E-value=0.0026 Score=39.37 Aligned_cols=41 Identities=10% Similarity=-0.064 Sum_probs=36.6
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHh-CCceecCcEEEEeeecc
Q 033146 75 SGYSKGFGFVKYATLEAAGKAIEGM-DGKVSLCMASFLHALAR 116 (126)
Q Consensus 75 ~~~~~g~~fv~f~~~~~a~~al~~l-~g~~~~g~~l~v~~~~~ 116 (126)
....+|+++++|.+.+.|.+|+..+ ||..++| .+.+.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4467899999999999999999999 9999999 999988754
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.76 E-value=0.47 Score=35.27 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=44.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGK 102 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~ 102 (126)
..++|+ +|..+...+|.+.|+.||.+ .|.++-+. .|||.|.+.+.+..++..++..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTTC
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHhC
Confidence 455565 99999999999999999954 45554442 6999999999999999988643
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=63.73 E-value=14 Score=19.42 Aligned_cols=59 Identities=7% Similarity=0.069 Sum_probs=35.9
Q ss_pred CCCHHHHHHHhhccC-----CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcEEEEeeec
Q 033146 48 RTTDETLRDTFSAFG-----EVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMDGKVSLCMASFLHALA 115 (126)
Q Consensus 48 ~~~~~~l~~~f~~~G-----~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~g~~~~g~~l~v~~~~ 115 (126)
.+...+|..++..-+ .|-.+.+..+ +.||+-.. +.+..++..|++..+.|+.++++.+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 456666666665433 3344555322 78888875 46778889999999999999887654
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=49.23 E-value=34 Score=19.29 Aligned_cols=57 Identities=9% Similarity=0.151 Sum_probs=46.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 033146 36 PSTNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGMD 100 (126)
Q Consensus 36 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 100 (126)
.++.+-|-|+|..+-..++-......|---.+.+. .|-+.+.|.+.++...|+..|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 46778889999999999888888888876677663 3458999999999999988653
No 224
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=39.80 E-value=53 Score=18.78 Aligned_cols=48 Identities=17% Similarity=0.318 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHhhc-cC---CeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHH
Q 033146 47 KRTTDETLRDTFSA-FG---EVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKA 95 (126)
Q Consensus 47 ~~~~~~~l~~~f~~-~G---~v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a 95 (126)
...+..+|++-+.. |+ ++..+ .+...-..|++.|||.| |.+.+.+.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 44677788777754 34 23333 44455456788899875 8888777654
No 225
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=35.71 E-value=65 Score=18.62 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhhc-cC---CeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHH
Q 033146 48 RTTDETLRDTFSA-FG---EVVHA-KIVKHRESGYSKGFGFVKYATLEAAGKA 95 (126)
Q Consensus 48 ~~~~~~l~~~f~~-~G---~v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a 95 (126)
..+..+|++-+.. |+ ++..+ .+...-..|++.|||.| |.+.+.+.+.
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4567777777653 44 22233 44444456788899985 8888777643
No 226
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=35.42 E-value=64 Score=18.48 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHhhc-cC---CeeEE-EEeecCCCCCcceEEEEEeCCHHHHHH
Q 033146 47 KRTTDETLRDTFSA-FG---EVVHA-KIVKHRESGYSKGFGFVKYATLEAAGK 94 (126)
Q Consensus 47 ~~~~~~~l~~~f~~-~G---~v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~ 94 (126)
...+..+|++-+.. |+ +...+ .+...-..|++.|||.| |.+.+.+.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 44677787777753 33 22333 45555567788899975 888877654
No 227
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=32.60 E-value=51 Score=22.15 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=24.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEE
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKI 69 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~ 69 (126)
..+.|+|+|+.++...|.+++.. +.+....+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 45789999999999999999977 55554443
No 228
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.51 E-value=1e+02 Score=19.51 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=37.1
Q ss_pred CeEEEcCCCC-C--------CCHHHHHHHh--hccCCeeEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHH
Q 033146 38 TNLFVSGLSK-R--------TTDETLRDTF--SAFGEVVHAKIVKHRESGYSKGFGFVKYA-TLEAAGKAIE 97 (126)
Q Consensus 38 ~~v~v~nlp~-~--------~~~~~l~~~f--~~~G~v~~~~~~~~~~~~~~~g~~fv~f~-~~~~a~~al~ 97 (126)
..+.|.|+|. . .....|++.| ..|.++.... +..+ ....|++.|.|. +..-...|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~-l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRP-LWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEE-EECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEe-cccC--CCCceeEEEEecCChHHHHHHHH
Confidence 3566778876 2 3457888866 8898876433 3432 236889999997 4555555554
No 229
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=29.27 E-value=61 Score=18.41 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=25.0
Q ss_pred CCCHHHHHHHhhc-cCC---eeEE-EEeecCCCCCcceEEEEEeCCHHHHHH
Q 033146 48 RTTDETLRDTFSA-FGE---VVHA-KIVKHRESGYSKGFGFVKYATLEAAGK 94 (126)
Q Consensus 48 ~~~~~~l~~~f~~-~G~---v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~ 94 (126)
..+..+|++-+.. |+. ...+ .+...-..|++.|||.| |.+.+.+.+
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3566777766643 332 2222 22233345677888875 776666554
No 230
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=28.31 E-value=50 Score=18.25 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.4
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCc
Q 033146 78 SKGFGFVKYATLEAAGKAIEGMDGK 102 (126)
Q Consensus 78 ~~g~~fv~f~~~~~a~~al~~l~g~ 102 (126)
..||-||++...++...++....|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 7899999999998888888777765
No 231
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=28.26 E-value=26 Score=23.68 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=25.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEe
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~ 70 (126)
....|+|||+.++...|.+++.....+....++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 456799999999999999999765555554443
No 232
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=26.31 E-value=92 Score=23.84 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHhh----ccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 033146 45 LSKRTTDETLRDTFS----AFGEVVHAKIVKHRESGYSKGFGFVKYATLEAAGKAIEGM 99 (126)
Q Consensus 45 lp~~~~~~~l~~~f~----~~G~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 99 (126)
.+.+.+-.+|..+|- .+|-|.++.+...+ -.......++.|.+.+++.+++..+
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 344445556777773 56778887765443 2234567889999999998888754
No 233
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=22.71 E-value=76 Score=20.95 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=21.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEE
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVHA 67 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~~ 67 (126)
..+.|+|+|+.++...+.+++.....+...
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 357899999999998888888754334333
No 234
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=22.65 E-value=1.4e+02 Score=18.34 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=29.0
Q ss_pred CCCHHHHHHHhhc-cCC---eeEE-EEeecCCCCCcceEEEEEeCCHHHHHH
Q 033146 48 RTTDETLRDTFSA-FGE---VVHA-KIVKHRESGYSKGFGFVKYATLEAAGK 94 (126)
Q Consensus 48 ~~~~~~l~~~f~~-~G~---v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~ 94 (126)
.++..+|++-+.. |+. ...+ .+...-..|.+.|||.| |.+.+.+.+
T Consensus 32 TpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 32 TASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 4677788777764 442 2222 34444456788899886 888877664
No 235
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=21.03 E-value=69 Score=21.06 Aligned_cols=29 Identities=14% Similarity=-0.012 Sum_probs=22.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeE
Q 033146 38 TNLFVSGLSKRTTDETLRDTFSAFGEVVH 66 (126)
Q Consensus 38 ~~v~v~nlp~~~~~~~l~~~f~~~G~v~~ 66 (126)
..+.|+|+|+.++...|.+++.....+..
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~ 124 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPL 124 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCce
Confidence 34789999999999999888876433433
No 236
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.60 E-value=41 Score=19.25 Aligned_cols=11 Identities=27% Similarity=0.754 Sum_probs=8.0
Q ss_pred HHHHHHhhccC
Q 033146 52 ETLRDTFSAFG 62 (126)
Q Consensus 52 ~~l~~~f~~~G 62 (126)
..|+++|++||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 46788888887
No 237
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.24 E-value=32 Score=22.90 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=23.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEe
Q 033146 40 LFVSGLSKRTTDETLRDTFSAFGEVVHAKIV 70 (126)
Q Consensus 40 v~v~nlp~~~~~~~l~~~f~~~G~v~~~~~~ 70 (126)
..|+|+|+.++...|.++++..+.+....++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 4789999999999999999865555544443
Done!