BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033147
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZPY1|PPOX2_ARATH Pyridoxine/pyridoxamine 5'-phosphate oxidase 2 OS=Arabidopsis
thaliana GN=PPOX2 PE=1 SV=2
Length = 198
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
Query: 4 QICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSV 63
++CWYF+++W+QFRINGR++VID SN D KLQ REK+WF S+++RL Y+ P G P
Sbjct: 77 EMCWYFSDTWEQFRINGRIEVIDASNPDQTKLQQREKAWFANSLRSRLIYVCPTPGSPCN 136
Query: 64 NEQ-PKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKYWASLKT 122
+EQ ++ LDP +GPV +C+L+L+P++VDYLNLK+NQ+L F S + GEK W S K
Sbjct: 137 SEQSSQQVKLDPSSGPVPEYCLLLLEPEKVDYLNLKTNQRLFFSSMATGTGEKCWTSEKV 196
Query: 123 SP 124
+P
Sbjct: 197 NP 198
>sp|Q47GJ3|HLDD_DECAR ADP-L-glycero-D-manno-heptose-6-epimerase OS=Dechloromonas
aromatica (strain RCB) GN=hldD PE=3 SV=1
Length = 332
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 11 ESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLD-PEQ 58
+++QFR +G+V + +GS+ P+ Q R+ + G K L +LD PE+
Sbjct: 188 HNFNQFRADGKVKLFEGSHGYPDGDQQRDFVFVGDVAKVNLFFLDHPEK 236
>sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2 SV=1
Length = 5141
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 27 GSNSDPEKLQIRE--------KSWFGCSMKARLQYLDPEQGCPSVNEQPKEFS---LDPC 75
G N D E +R SW CS+ Y + QG S P EFS L PC
Sbjct: 3010 GPNLDAEFCTLRPCQGPGAAWSSWTPCSVPCGGGYRNRTQG--SGRHSPVEFSTCSLQPC 3067
Query: 76 AGPVDAFC 83
AGPV C
Sbjct: 3068 AGPVPGVC 3075
>sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=2
Length = 4998
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 39/102 (38%), Gaps = 20/102 (19%)
Query: 25 IDGSNSDPEKLQIRE--------KSWFGCSMKARLQYLDPEQGCPSVNEQPKEFS---LD 73
G N D E +R SW CS+ Y + QG S P EFS L
Sbjct: 2859 CQGPNLDAEFCSLRPCRGPGAAWSSWTPCSVPCGGGYRNRTQG--SGPHSPIEFSTCSLQ 2916
Query: 74 PCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEK 115
PCAGPV C P+ +L+ Q + LS GE
Sbjct: 2917 PCAGPVPGVC-----PEDQQWLDCA--QGPASCAHLSIPGEA 2951
>sp|P44619|RHO_HAEIN Transcription termination factor Rho OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rho PE=3
SV=1
Length = 420
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 76 AGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLSDNGEKYWASLK 121
AGP D + + P Q+ NL++ K++ R GE+Y+A LK
Sbjct: 75 AGPDDIY----VSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLK 116
>sp|P58224|YIAT_ECO57 Putative outer membrane protein YiaT OS=Escherichia coli O157:H7
GN=yiaT PE=3 SV=1
Length = 246
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 2 MHQICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFG 44
M + WY E W + + DV+D SN +L + K G
Sbjct: 108 MAGVAWYHHERWGTVKASAAADVLDNSNGWVGELSVFHKMQIG 150
>sp|P37681|YIAT_ECOLI Putative outer membrane protein YiaT OS=Escherichia coli (strain
K12) GN=yiaT PE=3 SV=1
Length = 246
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 2 MHQICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFG 44
M + WY E W + + DV+D SN +L + K G
Sbjct: 108 MAGVAWYHHERWGTVKASAAADVLDNSNGWVGELSVFHKMQIG 150
>sp|A5E8H4|SYL_BRASB Leucine--tRNA ligase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
BAA-1182) GN=leuS PE=3 SV=1
Length = 874
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 22 VDVIDGSNSDPEKLQIREKSWFGCSMKARLQY-LDPEQGCPSVNEQPKEFSLDP 74
+D +DG + P+K+++ +++W G S +++ LDP Q P+ + K F+ P
Sbjct: 204 LDALDGLDRWPDKVRLMQRNWIGRSEGLLIRFALDP-QTTPAGETELKIFTTRP 256
>sp|C3MB60|SYL_RHISN Leucine--tRNA ligase OS=Rhizobium sp. (strain NGR234) GN=leuS PE=3
SV=1
Length = 876
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 22 VDVIDGSNSDPEKLQIREKSWFGCSMKARLQY-LDP 56
+D +DG PEK+++ +K+W G S L++ LDP
Sbjct: 204 LDALDGLEQWPEKVRLMQKNWIGRSEGLALRWALDP 239
>sp|Q8CFH6|SIK2_MOUSE Serine/threonine-protein kinase SIK2 OS=Mus musculus GN=Sik2 PE=1
SV=1
Length = 931
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 34 KLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPV 79
++QI E S+ G S + L P Q P ++QP FSL PV
Sbjct: 736 QMQIAESSYPGPSQQLAL----PHQETPLTSQQPPSFSLTQALSPV 777
>sp|Q8DHC6|UVRB_THEEB UvrABC system protein B OS=Thermosynechococcus elongatus (strain
BP-1) GN=uvrB PE=3 SV=1
Length = 668
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 15 QFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPE-----QGCPSVNEQPKE 69
+FR+ G V I + D +I +FG ++A ++Y+DP Q +N P +
Sbjct: 193 RFRVRGDVLEIGPAYED----RIIRVEFFGDEIEA-IRYVDPLTGETLQSVERLNIYPAK 247
Query: 70 FSLDPCAGPVDAFCVLILDPDQVDYLNLKSNQKLKFMSRLS 110
+ P A ++A CV I Q NL++ KL RLS
Sbjct: 248 HFVTP-AERLEAACVAIEAELQAQVANLEAQNKLLEAQRLS 287
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,055,482
Number of Sequences: 539616
Number of extensions: 1982089
Number of successful extensions: 4079
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4071
Number of HSP's gapped (non-prelim): 17
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)