Query 033147
Match_columns 126
No_of_seqs 103 out of 274
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 10:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5135 Uncharacterized conser 99.9 2.6E-25 5.6E-30 164.5 3.1 117 3-124 89-245 (245)
2 KOG4558 Uncharacterized conser 99.9 1.3E-23 2.8E-28 155.9 8.8 118 3-124 95-251 (251)
3 PRK05679 pyridoxamine 5'-phosp 99.8 2.5E-20 5.5E-25 138.9 10.0 109 2-124 75-195 (195)
4 TIGR00558 pdxH pyridoxamine-ph 99.8 3.1E-20 6.8E-25 140.6 10.6 109 2-124 97-217 (217)
5 PLN03049 pyridoxine (pyridoxam 99.6 1.9E-15 4E-20 125.4 8.1 114 2-124 337-462 (462)
6 PLN02918 pyridoxine (pyridoxam 99.2 3.5E-11 7.6E-16 101.5 7.4 114 2-124 419-544 (544)
7 COG0259 PdxH Pyridoxamine-phos 99.1 3.2E-11 7E-16 90.0 3.7 106 2-124 94-214 (214)
8 KOG2586 Pyridoxamine-phosphate 98.5 1.8E-07 3.8E-12 70.1 5.9 112 2-124 105-228 (228)
9 PF10590 PNPOx_C: Pyridoxine 5 97.8 0.0001 2.2E-09 42.3 5.9 38 83-124 2-42 (42)
10 TIGR03667 Rv3369 PPOX class pr 96.0 0.021 4.6E-07 39.6 5.6 47 2-52 61-108 (130)
11 TIGR03618 Rv1155_F420 PPOX cla 95.7 0.094 2E-06 34.9 7.5 28 2-29 46-74 (117)
12 COG3871 Uncharacterized stress 58.2 40 0.00088 24.2 5.5 63 6-98 70-132 (145)
13 PRK06733 hypothetical protein; 49.3 33 0.00072 24.7 4.0 25 2-28 70-94 (151)
14 PF13113 DUF3970: Protein of u 30.1 23 0.00049 21.7 0.5 10 13-22 1-10 (60)
15 PF10115 HlyU: Transcriptional 26.2 51 0.0011 21.8 1.7 16 13-28 37-52 (91)
16 KOG0271 Notchless-like WD40 re 22.7 47 0.001 27.9 1.2 16 1-16 177-192 (480)
17 PF09101 Exotox-A_bind: Exotox 22.3 81 0.0017 24.3 2.4 30 90-124 85-117 (262)
18 PF02530 Porin_2: Porin subfam 20.3 1E+02 0.0022 25.1 2.8 20 6-25 24-43 (379)
19 PF12091 DUF3567: Protein of u 20.2 80 0.0017 20.6 1.7 27 79-106 7-42 (85)
No 1
>COG5135 Uncharacterized conserved protein [Function unknown]
Probab=99.91 E-value=2.6e-25 Score=164.47 Aligned_cols=117 Identities=24% Similarity=0.477 Sum_probs=90.8
Q ss_pred EEEEEEECCCCeeEEEEEEEEEEcCCCC------------------------ChHHHHHHHHHHhcCCHHHHhccCCCC-
Q 033147 3 HQICWYFTESWDQFRINGRVDVIDGSNS------------------------DPEKLQIREKSWFGCSMKARLQYLDPE- 57 (126)
Q Consensus 3 ~E~~wy~~~t~~Q~Ri~G~~~ii~~~~~------------------------~~~~~~~r~~~W~~ls~~~R~~y~~p~- 57 (126)
+|+|||||+|++||||+|++.+++.+-. .++|...+.++|+--+++.++.|..|+
T Consensus 89 fEaC~yfP~T~eQ~RisGQ~~l~s~~~~~~~~~Pa~~~t~d~l~~~~~r~p~~w~~~~~~r~i~~~~~~Ed~a~f~ppP~ 168 (245)
T COG5135 89 FEACFYFPETWEQYRISGQCFLISKQFKYDIFSPAFSETNDDLTDEEIRTPINWDDDDDKRNIENDEHHEDEADFYPPPQ 168 (245)
T ss_pred HHHHhcccchhhheEeeeeEEEEchhhcCcccCchhhhhhhhhccccccCcccCCCchhccccccccCccchhhcCCCCC
Confidence 5999999999999999999999986522 124567778899988888888876544
Q ss_pred -------------CCCcCCCCCCCCCCCCCCCCCCCcEEEEEEeccEEEeEEec--CCceEEEEeecCCCCCCCeEEEEc
Q 033147 58 -------------QGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLK--SNQKLKFMSRLSDNGEKYWASLKT 122 (126)
Q Consensus 58 -------------PG~~~~~~~~~~~~~d~~~~~~~nF~vl~~~p~~VD~L~L~--~h~R~~f~~~~~~~~~~~W~~~~l 122 (126)
||+.+..++.+. ++.-..|.+||++|+|++++||+|+|+ |..|++|.++.+ .+.|++++|
T Consensus 169 ~s~~q~~~~~~P~P~~~~~~e~~~~--l~~~~~~~~~F~lv~le~~~VdfLnL~g~pg~R~l~~rd~n---~~~W~~q~V 243 (245)
T COG5135 169 LSRHQKSLYRKPAPGQKLTSETSKQ--LDKLHAGLENFGLVCLEVDSVDFLNLKGRPGERWLFQRDDN---KDLWEEQEV 243 (245)
T ss_pred CCcccccccccCCCcccccccChhh--HHHHHhhhcceeEEEeecCceeeeeecCCCCceeeEeccCC---cchhhcccc
Confidence 444443333222 233345899999999999999999999 689999998644 468999999
Q ss_pred cC
Q 033147 123 SP 124 (126)
Q Consensus 123 ~P 124 (126)
||
T Consensus 244 np 245 (245)
T COG5135 244 NP 245 (245)
T ss_pred CC
Confidence 98
No 2
>KOG4558 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=1.3e-23 Score=155.93 Aligned_cols=118 Identities=27% Similarity=0.522 Sum_probs=85.0
Q ss_pred EEEEEEECCCCeeEEEEEEEEEEcCC----------CC--------------ChHHHHHHHHHHhcCCHHHHhccC----
Q 033147 3 HQICWYFTESWDQFRINGRVDVIDGS----------NS--------------DPEKLQIREKSWFGCSMKARLQYL---- 54 (126)
Q Consensus 3 ~E~~wy~~~t~~Q~Ri~G~~~ii~~~----------~~--------------~~~~~~~r~~~W~~ls~~~R~~y~---- 54 (126)
.|+|||||+|++||||+|++.+|+.+ +. +..|+.+|. +|...|+..|+.|+
T Consensus 95 femC~yfp~TweQ~RisGqi~~it~~~~d~~~~dAdn~dq~~l~~s~~~I~~d~~~e~e~~-~~~~~~~~~~~~~~~~~s 173 (251)
T KOG4558|consen 95 FEMCGYFPKTWEQIRISGQIWLITPELADRNEFDADNLDQDHLINSNGRIPEDWSWEEERR-IWELHSPELRASFSTPPS 173 (251)
T ss_pred cceeeeechhhhheEecceEEEEcccccccccCCccccchHHHhhhhccccccccchhhhc-ccccCCHHHHHhhcCCcc
Confidence 69999999999999999999999432 11 123555654 77777777776665
Q ss_pred ----------CCCCCCcCCCCCCCCCCCCCCCCCCCcEEEEEEeccEEEeEEecC-CceEEEEeecCCCCCCCeEEEEcc
Q 033147 55 ----------DPEQGCPSVNEQPKEFSLDPCAGPVDAFCVLILDPDQVDYLNLKS-NQKLKFMSRLSDNGEKYWASLKTS 123 (126)
Q Consensus 55 ----------~p~PG~~~~~~~~~~~~~d~~~~~~~nF~vl~~~p~~VD~L~L~~-h~R~~f~~~~~~~~~~~W~~~~l~ 123 (126)
.|.||+-...++.. .+..-+.+.+||++|+|++++||||+|++ ..|.++... .|.+++.|++++||
T Consensus 174 ~sk~~~~~~~~P~pg~~~~~e~~~--~~~~~~~~~~~f~lv~le~~~VdfLNLk~~~gr~~~~~~-~g~~ek~W~s~~Vn 250 (251)
T KOG4558|consen 174 YSKYQGDVKVSPLPGTLTGKEDPG--VIEAWKTAWGRFSLVVLEANEVDFLNLKPPPGRKRVLHN-RGLNEKQWSSTRVN 250 (251)
T ss_pred hhhccCceeecCCCCccccccCcc--chhhhhccccceeEEEEeccccceeeccCCCcceEEEec-cCCCcccccccccC
Confidence 36677665544421 12223458999999999999999999994 445666543 33457899999999
Q ss_pred C
Q 033147 124 P 124 (126)
Q Consensus 124 P 124 (126)
|
T Consensus 251 p 251 (251)
T KOG4558|consen 251 P 251 (251)
T ss_pred C
Confidence 8
No 3
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=99.83 E-value=2.5e-20 Score=138.92 Aligned_cols=109 Identities=10% Similarity=0.171 Sum_probs=88.9
Q ss_pred eEEEEEEECCCCeeEEEEEEEEEEcCCCCChHHHHHHHHHHhcCCHHHHhccCC-CCCCCcCCCCCCC-----CC---CC
Q 033147 2 MHQICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLD-PEQGCPSVNEQPK-----EF---SL 72 (126)
Q Consensus 2 ~~E~~wy~~~t~~Q~Ri~G~~~ii~~~~~~~~~~~~r~~~W~~ls~~~R~~y~~-p~PG~~~~~~~~~-----~~---~~ 72 (126)
.|++|||+++++.|+||+|++++++++ ...++|.+++..+|.. .| ++||+++.+.... .. ..
T Consensus 75 ~val~~~~~~~~~qvrv~G~a~~~~~~--------~~~~~w~~~p~~~r~~-~~~~~qg~~i~~~~~~~~~~~~~~~~~~ 145 (195)
T PRK05679 75 KAALLFPWKSLERQVRVEGRVEKVSAE--------ESDAYFASRPRGSQIG-AWASKQSRPISSRAALEAKFAEVKAKFA 145 (195)
T ss_pred cEEEEEecCCCCEEEEEEEEEEEeCHH--------HHHHHHHhCCHhhhce-eeeCCCCCccCCHHHHHHHHHHHHhhcc
Confidence 489999999999999999999998765 3468999999999987 76 4789999764321 00 01
Q ss_pred CCCCCCCCcEEEEEEeccEEEeEEec---CCceEEEEeecCCCCCCCeEEEEccC
Q 033147 73 DPCAGPVDAFCVLILDPDQVDYLNLK---SNQKLKFMSRLSDNGEKYWASLKTSP 124 (126)
Q Consensus 73 d~~~~~~~nF~vl~~~p~~VD~L~L~---~h~R~~f~~~~~~~~~~~W~~~~l~P 124 (126)
+...++++||||+.|.|++||||+|+ +|+|++|.+. +++|+.+.|||
T Consensus 146 ~~~~~~p~~f~~~~l~p~~veflql~~~r~H~R~~y~~~-----~~~W~~~~l~P 195 (195)
T PRK05679 146 QGEVPRPPHWGGYRVVPESIEFWQGRPSRLHDRILYRRD-----DGGWKIERLAP 195 (195)
T ss_pred CCCCCCCCccEEEEEECCEEEEcCCCCCCCcceEEEEEC-----CCCEEEEEeCC
Confidence 22346799999999999999999998 4999999974 24799999998
No 4
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=99.83 E-value=3.1e-20 Score=140.58 Aligned_cols=109 Identities=12% Similarity=0.213 Sum_probs=87.5
Q ss_pred eEEEEEEECCCCeeEEEEEEEEEEcCCCCChHHHHHHHHHHhcCCHHHHhccCCC-CCCCcCCCCCCCC--------CCC
Q 033147 2 MHQICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDP-EQGCPSVNEQPKE--------FSL 72 (126)
Q Consensus 2 ~~E~~wy~~~t~~Q~Ri~G~~~ii~~~~~~~~~~~~r~~~W~~ls~~~R~~y~~p-~PG~~~~~~~~~~--------~~~ 72 (126)
.|++|||+++++.|+||+|+|.+++++ ...++|++++..+|.. .++ +||+++.+..... ...
T Consensus 97 ~v~l~f~~~~~~~qvrv~G~a~~~~~~--------~~~~~w~~~~~~sr~~-~~~~~q~~~~~~~~~l~~~~~~~~~~~~ 167 (217)
T TIGR00558 97 NAALVFFWPDLERQVRVEGKVEKLPRE--------ESDAYFKSRPRGSRIG-AWASRQSDVISNREELESKALKNTEKFE 167 (217)
T ss_pred cEEEEEEeCCCCEEEEEEEEEEECCHH--------HHHHHHHhCChhhcce-EEcCCCCcccCCHHHHHHHHHHHHhhcc
Confidence 379999999999999999999997764 3468999998888887 765 8999987542100 001
Q ss_pred CCCCCCCCcEEEEEEeccEEEeEEec---CCceEEEEeecCCCCCCCeEEEEccC
Q 033147 73 DPCAGPVDAFCVLILDPDQVDYLNLK---SNQKLKFMSRLSDNGEKYWASLKTSP 124 (126)
Q Consensus 73 d~~~~~~~nF~vl~~~p~~VD~L~L~---~h~R~~f~~~~~~~~~~~W~~~~l~P 124 (126)
+...+.++||||+.|.|++||||+|+ +|+|++|.+. +++|..++|+|
T Consensus 168 ~~~~p~p~~f~~~~l~p~~vEf~~l~~~r~H~R~~y~~~-----~~~W~~~~l~P 217 (217)
T TIGR00558 168 DAEIPRPDYWGGYRVVPEEIEFWQGRPSRLHDRFVYRRE-----NDPWKRVRLAP 217 (217)
T ss_pred CCCCCCCCceEEEEEECCEEEEccCCCCCCceEEEEEec-----CCCEEEEEeCC
Confidence 12245799999999999999999998 4999999974 25799999998
No 5
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=99.61 E-value=1.9e-15 Score=125.37 Aligned_cols=114 Identities=11% Similarity=0.278 Sum_probs=88.0
Q ss_pred eEEEEEEECCCCeeEEEEEEEEEEcCCCCChHHHHHHHHHHhcCCHHHHh----ccCC-CCCCCcCCCCCCC----CCCC
Q 033147 2 MHQICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARL----QYLD-PEQGCPSVNEQPK----EFSL 72 (126)
Q Consensus 2 ~~E~~wy~~~t~~Q~Ri~G~~~ii~~~~~~~~~~~~r~~~W~~ls~~~R~----~y~~-p~PG~~~~~~~~~----~~~~ 72 (126)
.|++|||+|..+.|+||+|+++.++++ +..++|++.+..+|. +|.. +.||.+.-..... ....
T Consensus 337 ~aal~F~w~~~~rQvRv~G~a~~~~~~--------~s~~yf~~rp~~sq~~a~as~qs~~i~~~~~l~~~~~~~~~~~~~ 408 (462)
T PLN03049 337 KASLVFYWDGLHRQVRVEGSVEKVSEE--------ESDQYFHSRPRGSQIGALVSKQSTVIPGRHILDQSYKELEAKYAD 408 (462)
T ss_pred cEEEEeecCCCCEEEEEEEEEEECCHH--------HHHHHHHhCChhhhhhheeCCCCCcCCCHHHHHHHHHHHHHhhcc
Confidence 479999999999999999999999844 457899999999999 8874 6788776322110 0001
Q ss_pred CCCCCCCCcEEEEEEeccEEEeEEec---CCceEEEEeecCCCCCCCeEEEEccC
Q 033147 73 DPCAGPVDAFCVLILDPDQVDYLNLK---SNQKLKFMSRLSDNGEKYWASLKTSP 124 (126)
Q Consensus 73 d~~~~~~~nF~vl~~~p~~VD~L~L~---~h~R~~f~~~~~~~~~~~W~~~~l~P 124 (126)
+...+.++||+++.|.|++||||+++ .|+|++|.+...+ +.+.|..+.|+|
T Consensus 409 ~~~~p~p~~w~g~~v~p~~iEfwq~~~~rlHdR~~y~~~~~~-~~~~W~~~rl~P 462 (462)
T PLN03049 409 SSAIPKPKHWGGYRLKPELIEFWQGRESRLHDRLQYTREEIN-GKSVWKIDRLAP 462 (462)
T ss_pred CCCCCCCCceEEEEEEeeEEEEccCCCCCCeeEEEEEecCCC-CCCCEEEEEeCC
Confidence 12346899999999999999999998 4999999984211 124599999998
No 6
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=99.21 E-value=3.5e-11 Score=101.46 Aligned_cols=114 Identities=15% Similarity=0.249 Sum_probs=83.0
Q ss_pred eEEEEEEECCCCeeEEEEEEEEEEcCCCCChHHHHHHHHHHhcCCHHHHhccCCCCCCCcCCCCCCCC-----C---CCC
Q 033147 2 MHQICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKE-----F---SLD 73 (126)
Q Consensus 2 ~~E~~wy~~~t~~Q~Ri~G~~~ii~~~~~~~~~~~~r~~~W~~ls~~~R~~y~~p~PG~~~~~~~~~~-----~---~~d 73 (126)
.|++|||+++++.|+||+|.+++++++.. .++|..-+..+|...-...-++++.+.+... . -.+
T Consensus 419 ~aal~F~w~~l~rQVRi~G~v~~~~~~es--------~~yf~sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~~~~~~ 490 (544)
T PLN02918 419 SAALLFYWEELNRQVRVEGSVQKVPESES--------ENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELEKKYSD 490 (544)
T ss_pred cEEEEeeeccccEEEEEEEEEEECCHHHH--------HHHHHhCCccccceEEecCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999988744 4677776666666544344555665522100 0 011
Q ss_pred CC-CCCCCcEEEEEEeccEEEeEEec---CCceEEEEeecCCCCCCCeEEEEccC
Q 033147 74 PC-AGPVDAFCVLILDPDQVDYLNLK---SNQKLKFMSRLSDNGEKYWASLKTSP 124 (126)
Q Consensus 74 ~~-~~~~~nF~vl~~~p~~VD~L~L~---~h~R~~f~~~~~~~~~~~W~~~~l~P 124 (126)
.. .+-|++|+...|.|++||+++-+ -|.|.+|.+..++ +.+.|..+.|+|
T Consensus 491 ~~~vp~P~~WgGy~v~P~~iEFWQgr~~RLHdR~~Y~r~~~~-~~~~W~~~rL~P 544 (544)
T PLN02918 491 GSVIPKPKNWGGYRLKPNLFEFWQGQQSRLHDRLQYSLQEVN-GKPVWKIHRLAP 544 (544)
T ss_pred CCCCCCCCCceeEEEecCEEEECCCCCCCccceEEEEecCCC-CCCCeEEEEeCC
Confidence 11 35689999999999999999998 3999999984321 124599999998
No 7
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=99.14 E-value=3.2e-11 Score=90.04 Aligned_cols=106 Identities=17% Similarity=0.294 Sum_probs=81.2
Q ss_pred eEEEEEEECCCCeeEEEEEEEEEEcCCCCChHHH----HHHHHHHhcCCHHHHhccCCCCCCCcCCCCCCCC--------
Q 033147 2 MHQICWYFTESWDQFRINGRVDVIDGSNSDPEKL----QIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKE-------- 69 (126)
Q Consensus 2 ~~E~~wy~~~t~~Q~Ri~G~~~ii~~~~~~~~~~----~~r~~~W~~ls~~~R~~y~~p~PG~~~~~~~~~~-------- 69 (126)
.+.+|||++..+.|+||.|.+..|++...+.+|. +.+..+|. |+.++ +|.+.....
T Consensus 94 ~Aal~F~W~~L~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAWA--S~QS~----------~i~~r~~Le~~~ae~~~ 161 (214)
T COG0259 94 YAALLFPWKELERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWA--SKQSR----------PIASRAALEAKVAELTA 161 (214)
T ss_pred ceeEEecchhccceEEEeeeeeeCCHHHHHHHHhcCCCcCccchhh--ccCcc----------ccCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999988776662 45667773 56666 665522110
Q ss_pred CCCCCCCCCCCcEEEEEEeccEEEeEEecC---CceEEEEeecCCCCCCCeEEEEccC
Q 033147 70 FSLDPCAGPVDAFCVLILDPDQVDYLNLKS---NQKLKFMSRLSDNGEKYWASLKTSP 124 (126)
Q Consensus 70 ~~~d~~~~~~~nF~vl~~~p~~VD~L~L~~---h~R~~f~~~~~~~~~~~W~~~~l~P 124 (126)
.-.+..-+-|++++...|.|..||+++-++ |.|.+|++. +++|....|.|
T Consensus 162 kf~~~~iP~P~~WgG~ri~p~~iEFWqgr~~RLHdR~~y~r~-----~g~W~~~RL~P 214 (214)
T COG0259 162 KFADGEIPRPPHWGGFRIVPESIEFWQGRPSRLHDRLRYRRD-----DGGWKIERLAP 214 (214)
T ss_pred hcCCCCCCCCCCccceEeeeeEEEEecCCCccceeeEEEeec-----CCCeEEEecCC
Confidence 001222246899999999999999999984 999999986 26899999987
No 8
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=98.55 E-value=1.8e-07 Score=70.12 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=77.8
Q ss_pred eEEEEEEECCCCeeEEEEEEEEEEcCCCCChHHHHHHHHHHhcCCHHHHhccCCCCCCCcCCCCCCCC--------CCCC
Q 033147 2 MHQICWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKE--------FSLD 73 (126)
Q Consensus 2 ~~E~~wy~~~t~~Q~Ri~G~~~ii~~~~~~~~~~~~r~~~W~~ls~~~R~~y~~p~PG~~~~~~~~~~--------~~~d 73 (126)
.+-|+||++....|+|+.|.+.-++.... +++|.+=+-.+|--=-.-+-|++|...+... .-.+
T Consensus 105 ~Aal~Fyw~~l~rQVRveG~ve~l~~ee~--------e~yf~srp~~SqIga~~s~qs~vI~~re~l~k~~e~l~~~~~~ 176 (228)
T KOG2586|consen 105 NAALLFYWEDLNRQVRVEGIVEKLPREEA--------EAYFKSRPRASQIGAWASPQSEVIPDREELEKKDEELTELFGD 176 (228)
T ss_pred cceEEEeehhccceeEEEeccccCCHHHH--------HHHHhcCcchhhccceecCCCCccCCHHHHHHHHHHHHHHhcc
Confidence 36799999999999999998887776643 5677654444442111124455665432111 0122
Q ss_pred -CCCCCCCcEEEEEEeccEEEeEEec---CCceEEEEeecCCCCCCCeEEEEccC
Q 033147 74 -PCAGPVDAFCVLILDPDQVDYLNLK---SNQKLKFMSRLSDNGEKYWASLKTSP 124 (126)
Q Consensus 74 -~~~~~~~nF~vl~~~p~~VD~L~L~---~h~R~~f~~~~~~~~~~~W~~~~l~P 124 (126)
..-+.|++++-+.|.|.++|+++.. -|.|..|++... ++.|....|.|
T Consensus 177 ~~~IpkP~swgg~rl~P~~~EFwQg~~~rLhDR~~yr~~~~---d~~Wk~~rlap 228 (228)
T KOG2586|consen 177 EQSIPKPDSWGGYRLVPQEFEFWQGQPDRLHDRIVYRRLTV---DEDWKLVRLAP 228 (228)
T ss_pred cccccCCCcccceEEeeeeehhhcCCchhhhheEEEecccC---CCCeeEEecCC
Confidence 2235799999999999999999987 399999995433 36899999987
No 9
>PF10590 PNPOx_C: Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; InterPro: IPR019576 Pyridoxamine 5'-phosphate oxidase (1.4.3.5 from EC) is an enzyme that is involved in the de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate. It oxidizes pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P. The enzyme requires the presence of flavin mononucleotide (FMN) as a cofactor, although there is some evidence that coenzyme F420 may perform this role in some species []. The sequences of the enzyme from bacterial (genes pdxH or fprA) [] and fungal (gene PDX3) [] sources show that this protein has been highly conserved throughout evolution. PdxH is evolutionary related [] to one of the enzymes in the phenazine biosynthesis protein pathway, phzD (also known as phzG). This entry represents one of the two dimerisation regions of the protein, located at the edge of the dimer interface, at the C terminus, being the last three beta strands, S6, S7, and S8 along with the last three residues to the end. In P21159 from SWISSPROT, S6 runs from residues 178-192, S7 from 200-206 and S8 from 211-215. the extended loop, of residues 167-177 may well be involved in the pocket formed between the two dimers that positions the FMN molecule []. ; GO: 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0055114 oxidation-reduction process; PDB: 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A 1JNW_A 1G78_A 1TY9_A 1CI0_A 1NRG_A ....
Probab=97.82 E-value=0.0001 Score=42.25 Aligned_cols=38 Identities=11% Similarity=0.358 Sum_probs=31.8
Q ss_pred EEEEEeccEEEeEEec---CCceEEEEeecCCCCCCCeEEEEccC
Q 033147 83 CVLILDPDQVDYLNLK---SNQKLKFMSRLSDNGEKYWASLKTSP 124 (126)
Q Consensus 83 ~vl~~~p~~VD~L~L~---~h~R~~f~~~~~~~~~~~W~~~~l~P 124 (126)
+...|.|++||+.+-+ -|.|.+|++..+ +.|+.+.|.|
T Consensus 2 gGy~l~P~~iEFWqg~~~RlHdR~~y~r~~~----~~W~~~rL~P 42 (42)
T PF10590_consen 2 GGYRLVPEEIEFWQGRPDRLHDRIRYTRDED----GGWTKERLQP 42 (42)
T ss_dssp EEEEEEECEEEEEEEETTSEEEEEEEEEETT----TCEEEEEE-T
T ss_pred CeEEEEcCEEEEeCCCCCCCEEEEEEEecCC----CCEEEEEEcC
Confidence 5678899999999998 399999999644 4799999998
No 10
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=96.03 E-value=0.021 Score=39.64 Aligned_cols=47 Identities=9% Similarity=-0.056 Sum_probs=35.7
Q ss_pred eEEEEEEECCC-CeeEEEEEEEEEEcCCCCChHHHHHHHHHHhcCCHHHHhc
Q 033147 2 MHQICWYFTES-WDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQ 52 (126)
Q Consensus 2 ~~E~~wy~~~t-~~Q~Ri~G~~~ii~~~~~~~~~~~~r~~~W~~ls~~~R~~ 52 (126)
.|+++|+++.. ..|++|+|++.++++.... ....++|++.++.++..
T Consensus 61 ~Vsl~~~~~~~~~~~v~v~G~a~i~~d~~~~----~~~~~~~~~y~~~~~~~ 108 (130)
T TIGR03667 61 RVSLHLNSDGRGGDVVVFTGTAEVVADAPPA----REIPAYLAKYREDAARI 108 (130)
T ss_pred cEEEEEEcCCCCceEEEEEEEEEEeCCchhH----HHHHHHHHHhhHHHhcC
Confidence 37899999665 4899999999999876432 23467899888877754
No 11
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=95.69 E-value=0.094 Score=34.91 Aligned_cols=28 Identities=4% Similarity=0.113 Sum_probs=23.8
Q ss_pred eEEEEEEECCCC-eeEEEEEEEEEEcCCC
Q 033147 2 MHQICWYFTESW-DQFRINGRVDVIDGSN 29 (126)
Q Consensus 2 ~~E~~wy~~~t~-~Q~Ri~G~~~ii~~~~ 29 (126)
.|.++++.+... .+++|+|+++++.++.
T Consensus 46 ~v~l~~~~~~~~~~~v~i~G~a~~v~d~~ 74 (117)
T TIGR03618 46 RVSLSVLDPDFPYRYVEVEGTAELVEDPD 74 (117)
T ss_pred eEEEEEECCCCCccEEEEEEEEEEecCCc
Confidence 367899998876 7999999999998764
No 12
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=58.18 E-value=40 Score=24.20 Aligned_cols=63 Identities=10% Similarity=0.262 Sum_probs=40.8
Q ss_pred EEEECCCCeeEEEEEEEEEEcCCCCChHHHHHHHHHHhcCCHHHHhccCCCCCCCcCCCCCCCCCCCCCCCCCCCcEEEE
Q 033147 6 CWYFTESWDQFRINGRVDVIDGSNSDPEKLQIREKSWFGCSMKARLQYLDPEQGCPSVNEQPKEFSLDPCAGPVDAFCVL 85 (126)
Q Consensus 6 ~wy~~~t~~Q~Ri~G~~~ii~~~~~~~~~~~~r~~~W~~ls~~~R~~y~~p~PG~~~~~~~~~~~~~d~~~~~~~nF~vl 85 (126)
||=.+...-=+=|.|+|+++.+.. .-+.+|.... ..-| ... . --.++|+|
T Consensus 70 ~~~~~~~~~fv~v~Gtael~~dra-------~~d~~W~~~~---~~wF-------------e~G----k---edP~l~~L 119 (145)
T COG3871 70 LFGYDDHDAFVEVSGTAELVEDRA-------KIDELWTSVL---EAWF-------------EQG----K---EDPDLTML 119 (145)
T ss_pred EEecCCCcceEEEEEEEEeeccHH-------HHHHhhhhhH---HHHH-------------hcC----C---CCCCeEEE
Confidence 343444445577899999998874 3367885332 2111 011 0 13689999
Q ss_pred EEeccEEEeEEec
Q 033147 86 ILDPDQVDYLNLK 98 (126)
Q Consensus 86 ~~~p~~VD~L~L~ 98 (126)
.|.|+.|+|++-.
T Consensus 120 kv~~e~i~yw~~~ 132 (145)
T COG3871 120 KVTAEDIDYWNSG 132 (145)
T ss_pred EEchhHhHHHhcc
Confidence 9999999999864
No 13
>PRK06733 hypothetical protein; Provisional
Probab=49.27 E-value=33 Score=24.74 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.3
Q ss_pred eEEEEEEECCCCeeEEEEEEEEEEcCC
Q 033147 2 MHQICWYFTESWDQFRINGRVDVIDGS 28 (126)
Q Consensus 2 ~~E~~wy~~~t~~Q~Ri~G~~~ii~~~ 28 (126)
.+.|.+|.+++. |.|+|.+.++++.
T Consensus 70 ~v~I~~~~~~~~--yqIkG~a~i~~e~ 94 (151)
T PRK06733 70 GVVLTIIANESV--YSISGAAEILTDR 94 (151)
T ss_pred cEEEEEEeCCcE--EEEEEEEEEEeee
Confidence 367889999887 9999999999865
No 14
>PF13113 DUF3970: Protein of unknown function (DUF3970)
Probab=30.11 E-value=23 Score=21.67 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=7.2
Q ss_pred CeeEEEEEEE
Q 033147 13 WDQFRINGRV 22 (126)
Q Consensus 13 ~~Q~Ri~G~~ 22 (126)
+.|+||+|+-
T Consensus 1 M~qVRl~G~~ 10 (60)
T PF13113_consen 1 MIQVRLSGTK 10 (60)
T ss_pred CceEEecCCH
Confidence 4688888863
No 15
>PF10115 HlyU: Transcriptional activator HlyU; InterPro: IPR018772 This is a family of hypothetical prokaryotic proteins, with no known function. One of the proteins in this entry corresponds to the transcriptional activator HlyU, indicating a possible similar role in other members.
Probab=26.24 E-value=51 Score=21.84 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=12.3
Q ss_pred CeeEEEEEEEEEEcCC
Q 033147 13 WDQFRINGRVDVIDGS 28 (126)
Q Consensus 13 ~~Q~Ri~G~~~ii~~~ 28 (126)
.=||||.|+++--.+.
T Consensus 37 gGQfRvag~I~K~~~g 52 (91)
T PF10115_consen 37 GGQFRVAGRIEKEIDG 52 (91)
T ss_pred CCceeEEEEEEeccCC
Confidence 3499999999876544
No 16
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=22.70 E-value=47 Score=27.93 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=14.1
Q ss_pred CeEEEEEEECCCCeeE
Q 033147 1 MMHQICWYFTESWDQF 16 (126)
Q Consensus 1 ~~~E~~wy~~~t~~Q~ 16 (126)
|..+||+|.|++..|+
T Consensus 177 ~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQI 192 (480)
T ss_pred cCCeEEEecCCCCCcc
Confidence 4679999999999997
No 17
>PF09101 Exotox-A_bind: Exotoxin A binding; InterPro: IPR015185 This domain is found in Pseudomonas aeruginosa exotoxin A, and is responsible for binding of the toxin to the alpha-2-macroglobulin receptor, with subsequent internalisation into endosomes. It adopts a thirteen-strand antiparallel beta jelly roll topology, which belongs to the concanavalin A-like lectins/glucanases fold superfamily []. ; PDB: 2Q5T_A 3Q9O_A 1IKP_A 1IKQ_A.
Probab=22.29 E-value=81 Score=24.29 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=20.7
Q ss_pred cEEEeEEec---CCceEEEEeecCCCCCCCeEEEEccC
Q 033147 90 DQVDYLNLK---SNQKLKFMSRLSDNGEKYWASLKTSP 124 (126)
Q Consensus 90 ~~VD~L~L~---~h~R~~f~~~~~~~~~~~W~~~~l~P 124 (126)
.-|=+|++. +..|..|+|. .+.|.-.||+|
T Consensus 85 ~gv~~~~~~~~n~~~~ysy~r~-----~~~~ainwlvp 117 (262)
T PF09101_consen 85 FGVIHLDITTENGTKTYSYNRK-----EGEFAINWLVP 117 (262)
T ss_dssp T-CEEEEEEETTCEEEEEEE-S-----SSEEEEEEEEE
T ss_pred cceeeccccCCCCceEEEEecc-----cccEEEEEEeE
Confidence 345566665 4578888875 35899999998
No 18
>PF02530 Porin_2: Porin subfamily; InterPro: IPR003684 This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to Gram-negative porins []. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of Gram-negative bacteria.; GO: 0015288 porin activity, 0006810 transport, 0016020 membrane
Probab=20.34 E-value=1e+02 Score=25.10 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.3
Q ss_pred EEEECCCCeeEEEEEEEEEE
Q 033147 6 CWYFTESWDQFRINGRVDVI 25 (126)
Q Consensus 6 ~wy~~~t~~Q~Ri~G~~~ii 25 (126)
.||.|.|-.-+||.|.++.-
T Consensus 24 f~~IPGTdTclrigGyvR~d 43 (379)
T PF02530_consen 24 FFYIPGTDTCLRIGGYVRAD 43 (379)
T ss_pred eEEcCCCCceEeeecEEEEE
Confidence 49999999999999999874
No 19
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=20.16 E-value=80 Score=20.65 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=17.8
Q ss_pred CCcEEEEEEeccEEEeEEec---------CCceEEEE
Q 033147 79 VDAFCVLILDPDQVDYLNLK---------SNQKLKFM 106 (126)
Q Consensus 79 ~~nF~vl~~~p~~VD~L~L~---------~h~R~~f~ 106 (126)
.+|||||.+.|+. +...|+ ..+|-+|-
T Consensus 7 Sd~y~VV~~~~~~-~~~~l~~gGyEIVDK~~~rEifi 42 (85)
T PF12091_consen 7 SDNYCVVEFPPDA-GHPALARGGYEIVDKNARREIFI 42 (85)
T ss_pred CCceEEEEecCCC-CccchhcCCcEEeecCCCceEEe
Confidence 5899999997653 334443 24777775
Done!