Query 033149
Match_columns 126
No_of_seqs 158 out of 1210
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 10:25:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3379 Diadenosine polyphosph 100.0 2.7E-30 5.8E-35 172.8 10.8 120 3-123 31-150 (150)
2 COG0537 Hit Diadenosine tetrap 100.0 1.8E-29 3.8E-34 172.8 12.4 109 3-123 29-137 (138)
3 PF01230 HIT: HIT domain; Int 99.9 3.1E-26 6.7E-31 148.0 7.8 78 3-80 20-97 (98)
4 cd01275 FHIT FHIT (fragile his 99.9 1.4E-25 3E-30 151.1 10.4 84 3-86 28-111 (126)
5 cd01277 HINT_subgroup HINT (hi 99.9 9E-25 2E-29 141.8 9.3 76 3-78 28-103 (103)
6 PRK10687 purine nucleoside pho 99.9 1.4E-24 3E-29 145.2 8.6 81 2-82 30-111 (119)
7 cd00468 HIT_like HIT family: H 99.9 5.6E-24 1.2E-28 133.7 8.9 76 2-77 11-86 (86)
8 cd01276 PKCI_related Protein K 99.9 1.6E-22 3.5E-27 131.6 7.9 76 2-78 27-104 (104)
9 KOG3275 Zinc-binding protein o 99.8 1.2E-20 2.6E-25 123.3 8.0 78 3-83 44-124 (127)
10 cd01278 aprataxin_related apra 99.8 3.1E-19 6.7E-24 116.3 8.5 72 3-76 30-103 (104)
11 cd00608 GalT Galactose-1-phosp 99.8 4.3E-19 9.4E-24 136.6 9.1 80 3-82 214-298 (329)
12 TIGR00209 galT_1 galactose-1-p 99.8 2E-18 4.3E-23 133.7 10.9 78 3-80 224-304 (347)
13 PLN02643 ADP-glucose phosphory 99.8 3.6E-18 7.8E-23 131.8 11.3 79 3-81 223-305 (336)
14 PRK11720 galactose-1-phosphate 99.8 1.6E-18 3.5E-23 134.1 9.4 78 3-80 224-304 (346)
15 PF11969 DcpS_C: Scavenger mRN 99.2 2E-11 4.4E-16 81.2 6.2 74 2-79 27-105 (116)
16 PF02744 GalP_UDP_tr_C: Galact 99.2 6E-11 1.3E-15 83.5 7.8 71 7-77 47-119 (166)
17 COG1085 GalT Galactose-1-phosp 99.2 1E-10 2.2E-15 89.9 8.6 77 6-82 218-299 (338)
18 PF04677 CwfJ_C_1: Protein sim 98.9 9.4E-09 2E-13 68.9 8.7 73 1-80 38-110 (121)
19 KOG2958 Galactose-1-phosphate 98.9 5.9E-09 1.3E-13 78.5 6.1 71 7-77 233-308 (354)
20 KOG4359 Protein kinase C inhib 98.8 1.5E-08 3.3E-13 68.7 7.0 78 3-82 61-141 (166)
21 KOG2476 Uncharacterized conser 97.7 0.00022 4.8E-09 57.1 8.5 72 3-80 347-418 (528)
22 KOG2477 Uncharacterized conser 97.5 0.00044 9.4E-09 56.0 7.6 76 1-80 434-509 (628)
23 KOG3969 Uncharacterized conser 97.2 0.0021 4.6E-08 48.5 7.7 66 10-79 189-257 (310)
24 cd00608 GalT Galactose-1-phosp 96.9 0.0045 9.8E-08 47.9 6.9 67 11-77 95-161 (329)
25 PLN03103 GDP-L-galactose-hexos 96.9 0.004 8.8E-08 49.4 6.6 64 3-77 176-241 (403)
26 PLN02643 ADP-glucose phosphory 96.8 0.0055 1.2E-07 47.7 7.2 68 10-77 108-175 (336)
27 PRK11720 galactose-1-phosphate 96.3 0.021 4.5E-07 44.7 7.1 65 11-77 107-171 (346)
28 COG1085 GalT Galactose-1-phosp 96.0 0.038 8.1E-07 43.1 7.4 68 10-77 95-162 (338)
29 KOG0562 Predicted hydrolase (H 95.8 0.011 2.3E-07 41.6 3.1 87 3-94 30-122 (184)
30 COG4360 APA2 ATP adenylyltrans 95.6 0.036 7.7E-07 41.4 5.3 66 3-79 99-164 (298)
31 TIGR00209 galT_1 galactose-1-p 95.2 0.11 2.4E-06 40.7 7.3 65 11-77 107-171 (347)
32 PF01087 GalP_UDP_transf: Gala 95.0 0.094 2E-06 37.3 6.1 67 11-77 112-178 (183)
33 KOG2720 Predicted hydrolase (H 93.8 0.049 1.1E-06 42.6 2.5 63 3-76 173-237 (431)
34 TIGR00672 cdh CDP-diacylglycer 93.2 0.24 5.1E-06 37.2 5.2 68 7-76 70-143 (250)
35 PF02611 CDH: CDP-diacylglycer 92.6 0.25 5.3E-06 36.5 4.5 69 6-76 41-115 (222)
36 PRK05471 CDP-diacylglycerol py 92.5 0.42 9E-06 35.9 5.6 69 6-76 70-144 (252)
37 PF01076 Mob_Pre: Plasmid reco 91.9 1.9 4.1E-05 30.9 8.4 51 25-82 94-145 (196)
38 COG2134 Cdh CDP-diacylglycerol 91.5 1 2.2E-05 33.1 6.4 67 8-76 72-144 (252)
39 COG5075 Uncharacterized conser 89.6 0.5 1.1E-05 35.4 3.6 64 11-78 185-251 (305)
40 PF03432 Relaxase: Relaxase/Mo 81.6 2.3 4.9E-05 30.8 3.7 30 47-82 83-115 (242)
41 COG1586 SpeD S-adenosylmethion 66.0 22 0.00048 24.3 5.1 59 20-79 19-83 (136)
42 KOG2958 Galactose-1-phosphate 65.0 27 0.00059 27.1 5.9 56 17-75 116-174 (354)
43 TIGR03793 TOMM_pelo TOMM prope 64.1 9.7 0.00021 23.4 2.9 24 9-35 52-75 (77)
44 PF02729 OTCace_N: Aspartate/o 58.4 18 0.0004 24.6 3.7 31 18-48 1-31 (142)
45 PF04986 Y2_Tnp: Putative tran 58.4 42 0.00092 23.7 5.7 51 67-123 13-64 (183)
46 PF14394 DUF4423: Domain of un 54.5 37 0.00081 23.8 4.9 51 17-77 119-170 (171)
47 PF01446 Rep_1: Replication pr 52.1 87 0.0019 23.2 6.7 11 67-77 78-88 (233)
48 PF14317 YcxB: YcxB-like prote 49.6 16 0.00035 20.1 2.0 25 8-38 37-61 (62)
49 PRK13863 type IV secretion sys 48.3 1.4E+02 0.0029 24.4 7.5 20 53-78 120-139 (446)
50 TIGR03330 SAM_DCase_Bsu S-aden 47.1 49 0.0011 21.6 4.2 57 22-79 10-72 (112)
51 PRK13878 conjugal transfer rel 46.5 27 0.00059 30.4 3.6 20 52-77 102-121 (746)
52 PLN02349 glycerol-3-phosphate 44.9 41 0.00088 27.3 4.1 46 2-47 245-292 (426)
53 PRK04025 S-adenosylmethionine 42.9 59 0.0013 22.2 4.3 57 22-79 11-73 (139)
54 PRK01706 S-adenosylmethionine 42.4 64 0.0014 21.5 4.3 57 22-79 13-75 (123)
55 PRK03124 S-adenosylmethionine 41.5 66 0.0014 21.5 4.3 57 22-79 11-73 (127)
56 PF03389 MobA_MobL: MobA/MobL 36.7 99 0.0021 22.5 4.9 47 25-80 78-126 (216)
57 PHA00002 A DNA replication ini 35.8 1.6E+02 0.0035 23.7 6.1 66 9-76 196-269 (515)
58 PRK00458 S-adenosylmethionine 35.1 97 0.0021 20.7 4.3 57 22-79 22-85 (127)
59 PLN03217 transcription factor 34.2 48 0.001 20.9 2.5 22 105-126 15-36 (93)
60 PRK01236 S-adenosylmethionine 34.1 1E+02 0.0022 20.8 4.2 57 22-79 12-74 (131)
61 PRK02255 putrescine carbamoylt 31.9 1.2E+02 0.0026 23.8 4.9 30 16-45 2-31 (338)
62 TIGR02768 TraA_Ti Ti-type conj 31.9 3.5E+02 0.0076 23.6 10.2 51 25-82 95-145 (744)
63 PF13960 DUF4218: Domain of un 31.1 14 0.0003 25.0 -0.3 42 26-78 18-59 (128)
64 PF02675 AdoMet_dc: S-adenosyl 28.7 83 0.0018 20.0 3.1 58 22-80 5-68 (106)
65 PF11314 DUF3117: Protein of u 27.6 52 0.0011 18.4 1.6 19 23-41 32-50 (51)
66 PF12239 DUF3605: Protein of u 27.5 2.2E+02 0.0047 19.8 5.3 62 10-76 90-156 (158)
67 PF08863 YolD: YolD-like prote 27.3 80 0.0017 19.1 2.7 21 104-124 20-40 (92)
68 TIGR02147 Fsuc_second hypothet 27.2 1.8E+02 0.0039 22.0 5.1 53 17-79 217-270 (271)
69 smart00309 PAH Pancreatic horm 26.3 1.1E+02 0.0024 16.0 2.9 20 105-124 10-29 (36)
70 PF02132 RecR: RecR protein; 26.0 81 0.0017 16.6 2.2 17 110-126 1-17 (41)
71 COG0540 PyrB Aspartate carbamo 25.8 76 0.0017 24.8 2.8 29 16-44 6-34 (316)
72 TIGR02778 ligD_pol DNA polymer 25.8 99 0.0021 23.3 3.4 9 23-31 118-126 (245)
73 PF00159 Hormone_3: Pancreatic 25.8 1.1E+02 0.0024 15.9 2.9 20 105-124 10-29 (36)
74 PRK02770 S-adenosylmethionine 24.7 2.3E+02 0.0051 19.3 5.9 57 22-79 24-86 (139)
75 PRK02289 4-oxalocrotonate taut 24.5 1.4E+02 0.0031 16.7 4.8 39 19-60 5-45 (60)
76 cd00126 PAH Pancreatic Hormone 23.6 1.3E+02 0.0027 15.7 2.9 20 105-124 10-29 (36)
77 PF13711 DUF4160: Domain of un 23.5 1.5E+02 0.0032 17.1 3.2 17 106-122 41-57 (66)
78 PF09830 ATP_transf: ATP adeny 23.1 46 0.001 19.3 1.0 15 8-22 7-21 (62)
79 TIGR00074 hypC_hupF hydrogenas 23.0 1.9E+02 0.0041 17.6 4.4 38 6-46 35-73 (76)
80 PLN02225 1-deoxy-D-xylulose-5- 22.9 76 0.0016 27.6 2.6 21 104-124 88-108 (701)
81 PRK03573 transcriptional regul 22.4 1.5E+02 0.0032 19.5 3.5 26 23-48 115-140 (144)
82 PRK11891 aspartate carbamoyltr 22.2 1E+02 0.0022 25.1 3.1 30 14-43 84-113 (429)
83 PF03147 FDX-ACB: Ferredoxin-f 22.2 87 0.0019 19.4 2.2 28 98-125 60-87 (94)
84 PRK10870 transcriptional repre 21.9 1.5E+02 0.0032 20.7 3.6 26 23-48 140-165 (176)
85 cd04866 LigD_Pol_like_3 LigD_P 21.2 1.3E+02 0.0029 22.3 3.2 23 23-45 97-122 (223)
86 COG3523 IcmF Type VI protein s 21.2 1.4E+02 0.003 27.7 3.9 88 20-123 224-321 (1188)
87 COG0078 ArgF Ornithine carbamo 20.9 1.3E+02 0.0028 23.5 3.3 32 16-47 5-36 (310)
88 TIGR00670 asp_carb_tr aspartat 20.8 2.4E+02 0.0051 21.7 4.7 28 18-45 1-28 (301)
89 cd04863 MtLigD_Pol_like MtLigD 20.7 1.4E+02 0.0031 22.2 3.3 24 23-46 106-132 (231)
90 PRK02102 ornithine carbamoyltr 20.7 1.2E+02 0.0026 23.7 3.1 30 16-45 6-35 (331)
91 PF12147 Methyltransf_20: Puta 20.7 1.5E+02 0.0033 23.1 3.5 61 38-118 228-288 (311)
92 PRK11649 putative peptidase; P 20.6 3.4E+02 0.0075 22.1 5.8 47 67-125 389-435 (439)
93 PF10003 DUF2244: Integral mem 20.5 1E+02 0.0022 20.8 2.4 20 104-123 121-140 (140)
No 1
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=99.97 E-value=2.7e-30 Score=172.79 Aligned_cols=120 Identities=45% Similarity=0.584 Sum_probs=109.0
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
+++|+.|||+||+|+|-+..+.||+.+|.++|+..++++.+.|++.++..++++.+.+|+.|||+|||+|+||+||+.+|
T Consensus 31 NlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQTVpHvHvHIlPR~~gD 110 (150)
T KOG3379|consen 31 NLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQTVPHVHVHILPRKAGD 110 (150)
T ss_pred eccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcccceeEEEEccccccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhh
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLL 123 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l 123 (126)
+..||.+|..+..+.= ....++.++.+||++.|+.+|..|
T Consensus 111 f~~Nd~IY~~L~~~~~-e~~~r~~Rs~eEM~eEA~~lr~~~ 150 (150)
T KOG3379|consen 111 FGDNDLIYDELDKHEK-ELEDRKPRSLEEMAEEAQRLREYF 150 (150)
T ss_pred cccchHHHHHHHhccc-ccccCCcchHHHHHHHHHHHHhhC
Confidence 9988999988763211 113567789999999999999864
No 2
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.97 E-value=1.8e-29 Score=172.83 Aligned_cols=109 Identities=30% Similarity=0.413 Sum_probs=96.4
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
+++|+++||+|||||+|+.++.+++++++.+|+.+++++++++++.+++++||+++|+|..+||.|+|+|+|||||+.+|
T Consensus 29 d~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~agq~V~HlH~HvIPr~~~d 108 (138)
T COG0537 29 DIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVFHLHIHIIPRYKGD 108 (138)
T ss_pred cCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCcccCcCcceEEEEEcCCcCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhh
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLL 123 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l 123 (126)
..+.+..|+. +..+.+++++++++|+.++
T Consensus 109 ~~~~~~~~~~------------~~~~~~~l~~~~~~i~~~l 137 (138)
T COG0537 109 DNFPGPGWGT------------KVEPNEELEELAEKIRKAL 137 (138)
T ss_pred CCcccccccc------------cCCcHHHHHHHHHHHHHhh
Confidence 6654433321 2222289999999999776
No 3
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.93 E-value=3.1e-26 Score=148.00 Aligned_cols=78 Identities=31% Similarity=0.538 Sum_probs=75.1
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~ 80 (126)
++.|.++||+||+||+|++++.+|+++++.+|+.+++++++++++.++++++|+.+++|+.+||+++|+|+|||||++
T Consensus 20 ~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 20 DIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp ESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSSSSS-EEEEEEEST
T ss_pred cCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCccCEEEEEEecccC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.93 E-value=1.4e-25 Score=151.07 Aligned_cols=84 Identities=35% Similarity=0.499 Sum_probs=79.9
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
+..|.++||+||+||+|+.++.+|+++|+.+|+.+++++.+++++.+++.+||+++|+|+.+||+++|+|+||+||+.+|
T Consensus 28 ~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~~gq~v~H~HiHiiPR~~~d 107 (126)
T cd01275 28 NLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFNIGINDGKAGGGIVPHVHIHIVPRWNGD 107 (126)
T ss_pred cCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCCCcCEEEEEEeCCcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 033149 83 SEEN 86 (126)
Q Consensus 83 ~~~~ 86 (126)
..++
T Consensus 108 ~~~~ 111 (126)
T cd01275 108 TNFM 111 (126)
T ss_pred CCCC
Confidence 6554
No 5
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.92 E-value=9e-25 Score=141.79 Aligned_cols=76 Identities=33% Similarity=0.487 Sum_probs=74.0
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeec
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPR 78 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr 78 (126)
+..|..|||++|+||+|+.++.||+++|+.+|+.+++++.+++++.+++++||+++|+++.+||+++|+|+||+||
T Consensus 28 ~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 28 DINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLNILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred CCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCcccCEEEEEEccC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.91 E-value=1.4e-24 Score=145.23 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=72.5
Q ss_pred CCCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHH-hhcCCCceEEEEecCCCCCCccCEEEEEEeeccC
Q 033149 2 SSIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLE-SYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (126)
Q Consensus 2 ~~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~-~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~ 80 (126)
-++.|.++||+||+||+|+.++.||+++++.+++.+++.+.+.+. ..+++++||+++|+|+.+||+|+|+|+|||||+.
T Consensus 30 lD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 30 RDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred EcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 368999999999999999999999999999998888887776654 4468899999999999999999999999999987
Q ss_pred CC
Q 033149 81 AS 82 (126)
Q Consensus 81 ~~ 82 (126)
..
T Consensus 110 ~~ 111 (119)
T PRK10687 110 LG 111 (119)
T ss_pred cC
Confidence 44
No 7
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.91 E-value=5.6e-24 Score=133.70 Aligned_cols=76 Identities=37% Similarity=0.569 Sum_probs=73.6
Q ss_pred CCCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEee
Q 033149 2 SSIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 2 ~~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
-++.|.++||+||+||+|+.++.+|+++++.+++.+++++.+++++.++++++|+++|+|+.+||+++|+|+||||
T Consensus 11 ~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~H~hiiP 86 (86)
T cd00468 11 VNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHVHLHVLP 86 (86)
T ss_pred ECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEEEEEeCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999998
No 8
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.88 E-value=1.6e-22 Score=131.62 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=67.2
Q ss_pred CCCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC--CCceEEEEecCCCCCCccCEEEEEEeec
Q 033149 2 SSIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHK--ASSLAFAIQDGPQAGQTVPHVHIHIVPR 78 (126)
Q Consensus 2 ~~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~--~~~~ni~~~~g~~~gq~v~H~HiHiiPr 78 (126)
.+..|.+|||+||+||+|+.++.||++++..++..+++.+ +.+.+.++ +++||+++|+|+.+||+++|+|+|||+|
T Consensus 27 ~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 27 HDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAA-AKVAKDLGIAEDGYRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred ECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHH-HHHHHHhCCCCCCEEEEEeCCCCCCCceeEEEEEEeCC
Confidence 3678999999999999999999999998888888888877 45555555 6899999999999999999999999986
No 9
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.84 E-value=1.2e-20 Score=123.32 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=69.7
Q ss_pred CCCCCCceeEEEecccc---cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeecc
Q 033149 3 SIEQYAFGPFKIDPRRD---AVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRK 79 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H---~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~ 79 (126)
++.|.+|||+|||||+| .+...|.+++.+.+++.+++++++.+.- .+|||+++|+|+.++|+|+|+|+||+|+.
T Consensus 44 Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl---~~gYrvv~NnG~~g~QsV~HvH~HvlgGr 120 (127)
T KOG3275|consen 44 DIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGL---EDGYRVVQNNGKDGHQSVYHVHLHVLGGR 120 (127)
T ss_pred ecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCc---ccceeEEEcCCcccceEEEEEEEEEeCCc
Confidence 68999999999999999 5566788889999999999999998864 56799999999999999999999999987
Q ss_pred CCCC
Q 033149 80 AASS 83 (126)
Q Consensus 80 ~~~~ 83 (126)
...|
T Consensus 121 qm~W 124 (127)
T KOG3275|consen 121 QMQW 124 (127)
T ss_pred ccCC
Confidence 7664
No 10
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.80 E-value=3.1e-19 Score=116.25 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=65.9
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhh--cCCCceEEEEecCCCCCCccCEEEEEEe
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESY--HKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~--~~~~~~ni~~~~g~~~gq~v~H~HiHii 76 (126)
+..|.+|||+||+||+|+.++.+|+++++.+++.+++.+.+.+.+. +++.+||+++|.+|. |+|+|+|+|||
T Consensus 30 ~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~n~g~h~~p~--~~v~H~H~Hvi 103 (104)
T cd01278 30 DIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDPSEFRFGFHAPPF--TSVSHLHLHVI 103 (104)
T ss_pred CCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCccCeEEEeCCCCC--cCeeeEEEEee
Confidence 5789999999999999999999999999999999999888877775 567899999999986 89999999997
No 11
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.79 E-value=4.3e-19 Score=136.60 Aligned_cols=80 Identities=24% Similarity=0.311 Sum_probs=73.2
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC-CCceEEEEecCCCCC----CccCEEEEEEee
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHK-ASSLAFAIQDGPQAG----QTVPHVHIHIVP 77 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~-~~~~ni~~~~g~~~g----q~v~H~HiHiiP 77 (126)
+..|..|||++|+||+|+.++.+|+++++.+|+.+++++++++++.++ ..+||+++|+++..| +.++|+|+||+|
T Consensus 214 p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~P 293 (329)
T cd00608 214 PFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPP 293 (329)
T ss_pred ecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCC
Confidence 457888999999999999999999999999999999999999999999 458999999998764 689999999999
Q ss_pred ccCCC
Q 033149 78 RKAAS 82 (126)
Q Consensus 78 r~~~~ 82 (126)
|+..+
T Consensus 294 r~~~~ 298 (329)
T cd00608 294 RRSAT 298 (329)
T ss_pred CcCCC
Confidence 98744
No 12
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.78 E-value=2e-18 Score=133.72 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=72.0
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCCC--ccCEEEEEEeecc
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQAGQ--TVPHVHIHIVPRK 79 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~-~~ni~~~~g~~~gq--~v~H~HiHiiPr~ 79 (126)
+..|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.++.+ +||+++|+++..|+ ..+|+|+||+||+
T Consensus 224 p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (347)
T TIGR00209 224 PYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (347)
T ss_pred ccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCc
Confidence 57899999999999999999999999999999999999999999999776 89999999998775 5578999999996
Q ss_pred C
Q 033149 80 A 80 (126)
Q Consensus 80 ~ 80 (126)
.
T Consensus 304 ~ 304 (347)
T TIGR00209 304 L 304 (347)
T ss_pred c
Confidence 4
No 13
>PLN02643 ADP-glucose phosphorylase
Probab=99.77 E-value=3.6e-18 Score=131.83 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=71.4
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCC--CCC--ccCEEEEEEeec
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQ--AGQ--TVPHVHIHIVPR 78 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~--~gq--~v~H~HiHiiPr 78 (126)
+..|.+|||++|+||+|+.++.+|+++++.+|+.+++++++++++.++..+||+++|+++. +++ ..+|||+||+||
T Consensus 223 p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~pyN~~~~~~P~~~~~~~~~~~H~hihi~PR 302 (336)
T PLN02643 223 PFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPYNYMIQTSPLGVEESNLPYTHWFLQIVPQ 302 (336)
T ss_pred ccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeecCCCccccCcccceEEEEEEecC
Confidence 4678899999999999999999999999999999999999999999999999999999997 345 446777899999
Q ss_pred cCC
Q 033149 79 KAA 81 (126)
Q Consensus 79 ~~~ 81 (126)
.+.
T Consensus 303 l~~ 305 (336)
T PLN02643 303 LSG 305 (336)
T ss_pred cCC
Confidence 854
No 14
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.77 E-value=1.6e-18 Score=134.11 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCC--CccCEEEEEEeecc
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQAG--QTVPHVHIHIVPRK 79 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~-~~ni~~~~g~~~g--q~v~H~HiHiiPr~ 79 (126)
+..|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.++.+ +||+++|+++..| +.++|+|+||+||+
T Consensus 224 p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (346)
T PRK11720 224 PYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPL 303 (346)
T ss_pred ccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCc
Confidence 46799999999999999999999999999999999999999999999766 7999999998754 67899999999996
Q ss_pred C
Q 033149 80 A 80 (126)
Q Consensus 80 ~ 80 (126)
.
T Consensus 304 ~ 304 (346)
T PRK11720 304 L 304 (346)
T ss_pred c
Confidence 4
No 15
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.24 E-value=2e-11 Score=81.18 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=52.6
Q ss_pred CCCCCCCceeEEEeccc-ccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC----CCceEEEEecCCCCCCccCEEEEEEe
Q 033149 2 SSIEQYAFGPFKIDPRR-DAVRFGDLTADETRDLWLTAQTVGTQLESYHK----ASSLAFAIQDGPQAGQTVPHVHIHIV 76 (126)
Q Consensus 2 ~~~~P~~~gh~lIiPk~-H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~----~~~~ni~~~~g~~~gq~v~H~HiHii 76 (126)
++.+|.++.|+||+||+ |+.++.+|+.+.+.-|..+.....+.+.+.+. ...++++++..| +++|+|+||+
T Consensus 27 ~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~~~~~~~gfH~~P----S~~HLHlHvi 102 (116)
T PF11969_consen 27 KDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLDSDDIRLGFHYPP----SVYHLHLHVI 102 (116)
T ss_dssp E-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-EGGGEEEEEESS-----SSSS-EEEEE
T ss_pred eCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccccCCC----CcceEEEEEc
Confidence 57889999999999999 99999999988766666665555555555542 457999998665 8999999999
Q ss_pred ecc
Q 033149 77 PRK 79 (126)
Q Consensus 77 Pr~ 79 (126)
...
T Consensus 103 ~~~ 105 (116)
T PF11969_consen 103 SPD 105 (116)
T ss_dssp ETT
T ss_pred cCC
Confidence 853
No 16
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.22 E-value=6e-11 Score=83.52 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=48.7
Q ss_pred CCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCC-CceEEEEecCCCCCCccC-EEEEEEee
Q 033149 7 YAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKA-SSLAFAIQDGPQAGQTVP-HVHIHIVP 77 (126)
Q Consensus 7 ~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~-~~~ni~~~~g~~~gq~v~-H~HiHiiP 77 (126)
..|..++|+||+|+.++.+++++|..+|+.+++.+++.+++.|+. .+|++++++.|..+.... ++|+|+.|
T Consensus 47 ~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~~pY~m~ihqaP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 47 RWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETSFPYNMGIHQAPVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp -STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EEEEEE---SSSS--TT--EEEEE-
T ss_pred cCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCCCCCchhhhcCCCCcccchhhhhccccc
Confidence 469999999999999999999999999999999999999999985 489999999998665431 24444443
No 17
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.19 E-value=1e-10 Score=89.91 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=68.0
Q ss_pred CCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCC-CCccCEEEEEEee---ccC
Q 033149 6 QYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQA-GQTVPHVHIHIVP---RKA 80 (126)
Q Consensus 6 P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~-~~ni~~~~g~~~-gq~v~H~HiHiiP---r~~ 80 (126)
...|.+++|+||+|+..+.++++++..+|+.+++.+...+++.+++. .|+++++..+.. .+.-+|+|+|++| |..
T Consensus 218 a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~ 297 (338)
T COG1085 218 ARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYPPLLRSA 297 (338)
T ss_pred ccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCCCceeeeeecCCCCcccccceEEEEEcccccccc
Confidence 45688999999999999999999999999999999999999999988 899999988753 3566899999999 654
Q ss_pred CC
Q 033149 81 AS 82 (126)
Q Consensus 81 ~~ 82 (126)
..
T Consensus 298 t~ 299 (338)
T COG1085 298 TK 299 (338)
T ss_pred cc
Confidence 44
No 18
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=98.93 E-value=9.4e-09 Score=68.90 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=55.5
Q ss_pred CCCCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccC
Q 033149 1 MSSIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (126)
Q Consensus 1 ~~~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~ 80 (126)
+|. .|+.+||++|+|..|+.++.+++++.+.++.+.-+.+.+...+ .|.+ + +++... .....|+|+++||-..
T Consensus 38 lpk-g~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~-~~~~-v-vf~E~~---~~~~~H~~iq~vPvp~ 110 (121)
T PF04677_consen 38 LPK-GPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFAS-QGKD-V-VFFERV---RKRNPHTHIQCVPVPK 110 (121)
T ss_pred eCC-CCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHH-cCCC-E-EEEEEe---CCCCcEEEEEEEEcCH
Confidence 455 8999999999999999999999999999998877766666554 3333 2 333322 3446899999999653
No 19
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=98.86 E-value=5.9e-09 Score=78.48 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=61.9
Q ss_pred CCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCC--Ccc-CE-EEEEEee
Q 033149 7 YAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQAG--QTV-PH-VHIHIVP 77 (126)
Q Consensus 7 ~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~-~~ni~~~~g~~~g--q~v-~H-~HiHiiP 77 (126)
..|..+|+|||+|+.+|.+|++.+..+|+.+++.+..++.+.|.+. .|+++++..|..+ +.. .| +|+|.+|
T Consensus 233 ~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~KydnlfetsfPYsmg~h~aPl~~t~~e~~n~W~h~hFyp 308 (354)
T KOG2958|consen 233 TWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFETSFPYSMGIHGAPLGSTEQENYNHWLHMHFYP 308 (354)
T ss_pred cCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccCCccccccccCCcccccccccchhhhhhccc
Confidence 4589999999999999999999999999999999999999999984 8999999988643 333 34 4999887
No 20
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=98.84 E-value=1.5e-08 Score=68.68 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=56.5
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhc--CCCceEEEEecCCCCCCccCEEEEEEe-ecc
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYH--KASSLAFAIQDGPQAGQTVPHVHIHIV-PRK 79 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~--~~~~~ni~~~~g~~~gq~v~H~HiHii-Pr~ 79 (126)
+++|.+..|.|++||+|+.+..+|+.++..-+-+.+..-...+.+.. ..+...++|+..|. .+|.|+|+|+| |-.
T Consensus 61 DikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~td~~~~r~GFHLPPf--~SV~HLHlH~I~P~~ 138 (166)
T KOG4359|consen 61 DIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNFTDFTNVRMGFHLPPF--CSVSHLHLHVIAPVD 138 (166)
T ss_pred cCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhccCCchheeEeccCCCc--ceeeeeeEeeecchH
Confidence 68999999999999999999999999865433333333222333332 34468889988874 78999999987 654
Q ss_pred CCC
Q 033149 80 AAS 82 (126)
Q Consensus 80 ~~~ 82 (126)
.++
T Consensus 139 DMg 141 (166)
T KOG4359|consen 139 DMG 141 (166)
T ss_pred Hhc
Confidence 444
No 21
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00022 Score=57.09 Aligned_cols=72 Identities=11% Similarity=0.118 Sum_probs=48.2
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~ 80 (126)
+..|++.||+||+|..|+.++..|+++.+.++-..=..+.+. .+..|.+ .+++.. ...-.-|+|+.+||..+
T Consensus 347 aKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~m-yk~~g~~--~vvfE~---~~~rs~Hlq~Qvipvpk 418 (528)
T KOG2476|consen 347 AKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKM-YKKQGKD--AVVFER---QSYRSVHLQLQVIPVPK 418 (528)
T ss_pred cCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHH-HHhcCCe--EEEEEe---ecccceeeEEEEEeccc
Confidence 468999999999999999999999987766665544333333 2323333 333321 11224699999999654
No 22
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.00044 Score=56.05 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=54.9
Q ss_pred CCCCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccC
Q 033149 1 MSSIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (126)
Q Consensus 1 ~~~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~ 80 (126)
+|+-.++..|||+|+|-.|+.+-..|+++.|.++-+..+-++..+.. -+-+ + |++.+.+ .-+..+|+-||-||..+
T Consensus 434 Lp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas-~n~d-v-iFyE~a~-~l~rrpH~~IeCIPvpq 509 (628)
T KOG2477|consen 434 LPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFAS-MNLD-V-IFYENAP-SLQRRPHTAIECIPVPQ 509 (628)
T ss_pred ccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHh-cCCC-e-EEEeccC-ccccCCceeEEEeechH
Confidence 47888999999999999999999999999998887776655544433 1222 1 2222222 23557999999999765
No 23
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.0021 Score=48.54 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=52.8
Q ss_pred eeEEEecccc-cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC--ceEEEEecCCCCCCccCEEEEEEeecc
Q 033149 10 GPFKIDPRRD-AVRFGDLTADETRDLWLTAQTVGTQLESYHKAS--SLAFAIQDGPQAGQTVPHVHIHIVPRK 79 (126)
Q Consensus 10 gh~lIiPk~H-~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~--~~ni~~~~g~~~gq~v~H~HiHiiPr~ 79 (126)
-|++.|-.|+ +.++.||.++.+.-|-++-.++..++...||.+ -+.+.+|=-| +.+|+|+||++-.
T Consensus 189 LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlrmf~HYqP----SyYHlHVHi~nik 257 (310)
T KOG3969|consen 189 LYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLRMFFHYQP----SYYHLHVHIVNIK 257 (310)
T ss_pred eeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEEEEEEecC----ceEEEEEEEEecc
Confidence 3555555444 999999999999999999999999999888865 4788887544 4689999999943
No 24
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=96.86 E-value=0.0045 Score=47.92 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=54.9
Q ss_pred eEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEee
Q 033149 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 11 h~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
.|+|...+|..++.+++.+++..+..+.+.-...+.+.-+..=+.+.-|.|+.+|.+.+|-|..|+.
T Consensus 95 eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a 161 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA 161 (329)
T ss_pred EEEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence 6788899999999999999999999988888777765322333556778899999999999999774
No 25
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=96.85 E-value=0.004 Score=49.43 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=39.3
Q ss_pred CCCCCCceeEEEeccc--ccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEee
Q 033149 3 SIEQYAFGPFKIDPRR--DAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~--H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
+..|+.+||+++||.. |.+... +.+ ...++-.++. ..+..+|.+++|. .-|.-++.|+|+|.+-
T Consensus 176 NvsPI~~gH~LlvP~~~~~lPQ~i--~~~----~l~la~~~a~----~~~~p~frvgYNS-lGA~ASvNHLHFQa~y 241 (403)
T PLN03103 176 NVSPIEYGHVLLVPRVLDCLPQRI--DPD----SFLLALYMAA----EANNPYFRVGYNS-LGAFATINHLHFQAYY 241 (403)
T ss_pred eCCCCccCeEEEcCCcccCCCeEe--cHH----HHHHHHHHHH----hcCCCcEEEEecC-CccccCcceeeeeecc
Confidence 3579999999999754 554333 332 1122222222 2245668888875 4344589999999775
No 26
>PLN02643 ADP-glucose phosphorylase
Probab=96.84 E-value=0.0055 Score=47.73 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=54.7
Q ss_pred eeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEee
Q 033149 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 10 gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
-.|+|..-+|..++.+|+.+++..+..+.+.-...+.+.-+..=+.+.-|.|+.+|.+.+|-|-.|+.
T Consensus 108 ~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 108 HDVVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred EEEEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 35677889999999999999999999988887777765322333556678899999999999999874
No 27
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=96.26 E-value=0.021 Score=44.70 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=54.3
Q ss_pred eEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEee
Q 033149 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 11 h~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
.|+|-..+|..++.+|+.+++..+..+.+.-...+.+. ..=+.+.-|.|+.+|.+..|-|-.|+.
T Consensus 107 eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~--i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 107 RVICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKT--YPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred EEEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhC--CcEEEEEeecCcccCcCCCCCceeeee
Confidence 46778899999999999999999999999888888774 333556677799999999999988774
No 28
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=96.05 E-value=0.038 Score=43.11 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=57.2
Q ss_pred eeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEee
Q 033149 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 10 gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
..++|-...|-.++.+|+.+++.++..+.+...+.|.+.-...-+.+.-|.|+.+|.+.+|-|..|+.
T Consensus 95 ~~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 95 SRVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred eEEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceee
Confidence 34667789999999999999999999999999998888543445677889999999999999988763
No 29
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=95.77 E-value=0.011 Score=41.64 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=50.0
Q ss_pred CCCCCCceeEEEecccc-cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC----CCceEEEEecCCCCCCccCEEEEEEee
Q 033149 3 SIEQYAFGPFKIDPRRD-AVRFGDLTADETRDLWLTAQTVGTQLESYHK----ASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H-~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~----~~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
+..|.+..|+||+|++- ++++..+-.+.+ ++......+...+...++ +.-|+++++.+| +..++|+|||-
T Consensus 30 D~fPKa~~H~LvLpr~s~i~~l~~~~qe~l-~ll~~~h~~~~~~v~~~~~~~~~~~f~vG~HavP----SM~~LHLHVIS 104 (184)
T KOG0562|consen 30 DKFPKARMHLLVLPRRSSIDSLFSVVQEHL-SLLKEDHAVGPCWVDQLTNEALCNYFRVGFHAVP----SMNNLHLHVIS 104 (184)
T ss_pred ccCccceeEEEEecccchhHHHHHHHHHHh-hHhHHHhhcCchHHHHhcchhhhhheeeeeccCc----chhheeEEEee
Confidence 46789999999999633 455555444432 222223333322222232 335788887665 45799999998
Q ss_pred ccC-CCCCCCCccchhhh
Q 033149 78 RKA-ASSEENDGNKDVKE 94 (126)
Q Consensus 78 r~~-~~~~~~~~~~~~~~ 94 (126)
.-. .+...+...|....
T Consensus 105 kDf~S~sLKNKKHwnSFn 122 (184)
T KOG0562|consen 105 KDFVSPSLKNKKHWNSFN 122 (184)
T ss_pred cccCCchhccchhhcccC
Confidence 543 33334455565444
No 30
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.036 Score=41.38 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=45.7
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeecc
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRK 79 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~ 79 (126)
+.-|..+.|+|||.++--..=+-|+..++.-...++ . +-+| -+..|.||.+|.+-+|=|+.++|..
T Consensus 99 NKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta~~vL----~------~ldg-lvFYNsGp~aGaSq~HkHLQi~pmP 164 (298)
T COG4360 99 NKFPVVDEHLLIVTREFEDQESALTLADFTTAYAVL----C------GLDG-LVFYNSGPIAGASQDHKHLQIVPMP 164 (298)
T ss_pred hcCCcccceeEEeehhhhhccccCCHHHHHHHHHHH----h------cccc-eEEecCCCCcCcCCCccceeEeecc
Confidence 346888999999987765444555655554333322 2 2333 4667889999999999999999864
No 31
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=95.17 E-value=0.11 Score=40.70 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=53.3
Q ss_pred eEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEee
Q 033149 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 11 h~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
.|+|-.-+|-.++.+|+.+++..+..+.+.-...|.. +..=+.++-|.|+.+|.+.+|-|-.|+.
T Consensus 107 eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~~--~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 107 RVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGK--TYPWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred EEEEeCCCccCChhHCCHHHHHHHHHHHHHHHHHHHh--CCcEEEEEeecCcccCcCCCCCceeeee
Confidence 4677789999999999999999999999888888873 2333455667799999999999988774
No 32
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=95.05 E-value=0.094 Score=37.32 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=47.7
Q ss_pred eEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEee
Q 033149 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 11 h~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
.++|-.-+|-.++.+|+.++...+..+.+.-...|.+.-...=+.++=|.|..+|.+..|-|-.|+.
T Consensus 112 EViIe~p~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 112 EVIIESPKHERTLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp EEEES-SSTT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred EEEEeCCCCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 5677788898999999999999999988877777765433443555667789899999999988874
No 33
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=93.82 E-value=0.049 Score=42.61 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=37.7
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHH--HHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEe
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADET--RDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~--~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHii 76 (126)
+..|+..||+||||+- .++.+.-+ ..|.-++. +....+.+-|.+++|.. .+.-+|.|+|+|.+
T Consensus 173 N~sPie~~H~LiiP~V-----~kc~pQrit~~al~lav~-----~m~~~dd~~frlgyNSl-ga~AsVNHLHfha~ 237 (431)
T KOG2720|consen 173 NVSPIEYGHVLIIPRV-----LKCLPQRITHKALLLAVT-----MMAEADDPYFRLGYNSL-GAFASVNHLHFHAY 237 (431)
T ss_pred ecCccccCcEEEecch-----hccCcceeeHHHHHHHHH-----HHHhcCCchhheecccc-hhhhhhhhhhhhhh
Confidence 3579999999999964 33333322 22222222 22222344577887643 35578999999976
No 34
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=93.22 E-value=0.24 Score=37.16 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=48.1
Q ss_pred CCceeEEEecccccCCcCC------CCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEe
Q 033149 7 YAFGPFKIDPRRDAVRFGD------LTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (126)
Q Consensus 7 ~~~gh~lIiPk~H~~~~~~------l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHii 76 (126)
.-|.|.|+||-..++-+.+ -++.-+..-+..-..+.+.++.-+....+.+.+|.. .|.+-.|+||||=
T Consensus 70 ~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~--~gRSQnQLHIHIs 143 (250)
T TIGR00672 70 NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINSR--TGRSQNHFHIHIS 143 (250)
T ss_pred CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecCC--CCcccccceeeHh
Confidence 4578999999999877653 222345555555566777777766666788888753 5777789999973
No 35
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=92.62 E-value=0.25 Score=36.49 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=37.5
Q ss_pred CCCceeEEEecccccCCcCC------CCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEe
Q 033149 6 QYAFGPFKIDPRRDAVRFGD------LTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (126)
Q Consensus 6 P~~~gh~lIiPk~H~~~~~~------l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHii 76 (126)
+.-+.|+|+||-..++-+.+ =++.-+..-+..-..+.+++.+-+..+.+.+.+|.. .|.+-.|+||||=
T Consensus 41 ~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~--~gRsQdQLHIHis 115 (222)
T PF02611_consen 41 RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQ--YGRSQDQLHIHIS 115 (222)
T ss_dssp SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-G--GG-S--S--EEEE
T ss_pred CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCc--cCccccceEeEhh
Confidence 34578999999998776653 123345555555556788888877777899999864 4666789999974
No 36
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=92.50 E-value=0.42 Score=35.89 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=48.8
Q ss_pred CCCceeEEEecccccCCcCC---CC---HHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEe
Q 033149 6 QYAFGPFKIDPRRDAVRFGD---LT---ADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (126)
Q Consensus 6 P~~~gh~lIiPk~H~~~~~~---l~---~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHii 76 (126)
+.-|.|.|+||-..++-+.+ ++ +.-+..-+..-..+.+.+++-+..+.+.+.+|.. .|.+-.|+||||=
T Consensus 70 ~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~--~gRSQnQLHIHIs 144 (252)
T PRK05471 70 RNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINSR--YGRTQDQLHIHIS 144 (252)
T ss_pred CCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecCC--CCccccceeeehh
Confidence 34578999999999876653 22 2345555555566777787777666788888753 5777789999974
No 37
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=91.92 E-value=1.9 Score=30.93 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 25 DLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 25 ~l~~~e~~~l~~~~~~v~~~l~~~~~~~-~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
+++.++. ..........+.+.||.+ -++.++|..+ ..||+|+-++|...+.
T Consensus 94 ~~~~e~~---~~~~~~~~~~~~~r~g~~ni~~a~vH~DE----~tPH~H~~~vP~~~~~ 145 (196)
T PF01076_consen 94 DLDPEQQ---KRWFEDSLEWLQERYGNENIVSAVVHLDE----TTPHMHFDVVPIDEDG 145 (196)
T ss_pred chhhHHH---HHHHHHHHHHHHHHCCchhEEEEEEECCC----CCcceEEEEeeccccc
Confidence 4555544 444556667777788854 5777888665 3799999999987665
No 38
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=91.52 E-value=1 Score=33.12 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=43.7
Q ss_pred CceeEEEecccccCCcCC---C---CHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEe
Q 033149 8 AFGPFKIDPRRDAVRFGD---L---TADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (126)
Q Consensus 8 ~~gh~lIiPk~H~~~~~~---l---~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHii 76 (126)
-|...|++|-.+++.+.+ + ++.-+-.-++.--.+++++...+....+.+.+|.. .|.+-.|+||||-
T Consensus 72 gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaINs~--~gRtQdqlHIHIS 144 (252)
T COG2134 72 GPLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAINSK--NGRTQDQLHIHIS 144 (252)
T ss_pred CCceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEecCc--cCccccceEEEEE
Confidence 366789999999876653 1 11223344445555777887766666677777643 4677789999974
No 39
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=89.58 E-value=0.5 Score=35.43 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=46.2
Q ss_pred eEEE-ecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC--ceEEEEecCCCCCCccCEEEEEEeec
Q 033149 11 PFKI-DPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS--SLAFAIQDGPQAGQTVPHVHIHIVPR 78 (126)
Q Consensus 11 h~lI-iPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~--~~ni~~~~g~~~gq~v~H~HiHiiPr 78 (126)
|+++ +-+.-+.++.||....+.-+.++-.++...+...|+.+ -+.++++-.| +.+|+|+||+-.
T Consensus 185 ~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l~mfvHY~P----sYyhlHvHI~nI 251 (305)
T COG5075 185 YLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNELRMFVHYQP----SYYHLHVHIVNI 251 (305)
T ss_pred eEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChhHeEEEEEecc----ceEEEEEEEEee
Confidence 3444 44445888999999998888888777776666555544 5777776544 468999999963
No 40
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=81.65 E-value=2.3 Score=30.85 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=16.9
Q ss_pred hhcCCC--ceEEEEecCCCCCCccCEEEEEEe-eccCCC
Q 033149 47 SYHKAS--SLAFAIQDGPQAGQTVPHVHIHIV-PRKAAS 82 (126)
Q Consensus 47 ~~~~~~--~~ni~~~~g~~~gq~v~H~HiHii-Pr~~~~ 82 (126)
+.++++ .+-++.|. +-.|.|+||+ +|...+
T Consensus 83 ~~~~~~~~~~v~~~H~------D~~h~H~Hivin~v~~~ 115 (242)
T PF03432_consen 83 EEMGPGNHQYVVVVHT------DTDHPHVHIVINRVDLD 115 (242)
T ss_pred HHcCCCCcceEEEECC------CcCeeeeeEEEeecccc
Confidence 334453 45555553 3469999977 565433
No 41
>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism]
Probab=65.97 E-value=22 Score=24.25 Aligned_cols=59 Identities=17% Similarity=0.060 Sum_probs=37.4
Q ss_pred cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCcc------CEEEEEEeecc
Q 033149 20 AVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV------PHVHIHIVPRK 79 (126)
Q Consensus 20 ~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v------~H~HiHiiPr~ 79 (126)
+.++.+++.+++.+...+-+.+..+.+.. |..-.++.++.-...|-++ .|+=+|-.|-+
T Consensus 19 ~~~lyg~d~~~l~d~e~l~~i~~eAa~~~-gati~~~~~~~f~p~GvSgvvliaESHitiHTwPEy 83 (136)
T COG1586 19 YGELYGCDIDLLYDAERLEEILLEAAKIA-GATILNIAFHKFSPQGVSGVVLIAESHITIHTWPEY 83 (136)
T ss_pred eeehhcCCHHHhccHHHHHHHHHHHHHHh-CCEEEEEEeEEecCCCeEEEEEEEeeeeeEecCCcc
Confidence 67899999888776665555555554442 4555555554432233222 89999999965
No 42
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=64.97 E-value=27 Score=27.12 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=39.6
Q ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceE---EEEecCCCCCCccCEEEEEE
Q 033149 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLA---FAIQDGPQAGQTVPHVHIHI 75 (126)
Q Consensus 17 k~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n---i~~~~g~~~gq~v~H~HiHi 75 (126)
-.|--++.+++..++..+..+-++....|.+ .+.|+ |+=|.|...|++.+|-|-..
T Consensus 116 Pnh~ltLp~m~~~~i~~vv~aw~~~~~~l~~---h~~y~yvQIFeNkGa~mGcSn~HpHgQ~ 174 (354)
T KOG2958|consen 116 PNHNLTLPLMDVVEIRDVVDAWKKLYNELGQ---HDSYKYVQIFENKGAAMGCSNPHPHGQA 174 (354)
T ss_pred CccccccccCCHHHHHHHHHHHHHHHHHhcc---cCCcceeeeeccCCcccccCCCCcccce
Confidence 3454457888888888888777777777764 34444 45566788899998888654
No 43
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=64.11 E-value=9.7 Score=23.36 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=19.5
Q ss_pred ceeEEEecccccCCcCCCCHHHHHHHH
Q 033149 9 FGPFKIDPRRDAVRFGDLTADETRDLW 35 (126)
Q Consensus 9 ~gh~lIiPk~H~~~~~~l~~~e~~~l~ 35 (126)
.-|.+|+|.+.-. +||++++..+.
T Consensus 52 ~~~~lVlP~~P~~---~lse~~L~~va 75 (77)
T TIGR03793 52 TVLYLVLPVNPDI---ELTDEQLDAVA 75 (77)
T ss_pred CeEEEEecCCCCC---CCCHHHHHHhh
Confidence 3578999999977 89999987653
No 44
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=58.40 E-value=18 Score=24.55 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=26.8
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 033149 18 RDAVRFGDLTADETRDLWLTAQTVGTQLESY 48 (126)
Q Consensus 18 ~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~ 48 (126)
||.-++.|++.+|+..|...+..+.+.....
T Consensus 1 r~~l~~~dls~~ei~~ll~~A~~lk~~~~~~ 31 (142)
T PF02729_consen 1 RHLLSIKDLSPEEIEALLDLAKELKAAPKKG 31 (142)
T ss_dssp SEBSSGGGS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCchhhCCHHHHHHHHHHHHHHHhhhhcC
Confidence 6888999999999999999999988887764
No 45
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=58.35 E-value=42 Score=23.70 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=26.6
Q ss_pred ccCEEEEEEe-eccCCCCCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhh
Q 033149 67 TVPHVHIHIV-PRKAASSEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLL 123 (126)
Q Consensus 67 ~v~H~HiHii-Pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l 123 (126)
-.+|.|+|++ |.-.-+. +..|...... + + -+.+.++..-..++.+.|++++
T Consensus 13 L~~hpHiH~lVt~Ggl~~---~~~w~~~~~~-~-~-fp~k~l~~~fr~k~l~~L~~~~ 64 (183)
T PF04986_consen 13 LNWHPHIHCLVTGGGLDK---DGQWKKARKD-Y-F-FPVKALSKVFRGKFLQALRQRY 64 (183)
T ss_pred cccCCeEEEEEecccccc---cccccccCcc-c-c-hhhhhhhHHHHHHHHHHHHHHH
Confidence 3478889955 5422121 1244332111 1 1 1334566677777888888774
No 46
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=54.47 E-value=37 Score=23.83 Aligned_cols=51 Identities=10% Similarity=0.212 Sum_probs=35.1
Q ss_pred ccccCCc-CCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEee
Q 033149 17 RRDAVRF-GDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 17 k~H~~~~-~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
.|+++++ ..++++.+.++-..++..-+.+......+ .....|+++-++++|
T Consensus 119 ~R~~s~~T~~vs~~~~~ki~~~i~~fRk~i~~i~~~~----------~~~~~Vy~lN~qlFP 170 (171)
T PF14394_consen 119 ERDFSGLTMSVSREDYEKIKKEIREFRKKIIAIAEED----------KEPDRVYQLNIQLFP 170 (171)
T ss_pred ccceeeeEEEeCHHHHHHHHHHHHHHHHHHHHHHhcC----------CCCCeEEEEEEEEec
Confidence 5667766 56888888888887777777666543332 124667888888887
No 47
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=52.07 E-value=87 Score=23.19 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=7.6
Q ss_pred ccCEEEEEEee
Q 033149 67 TVPHVHIHIVP 77 (126)
Q Consensus 67 ~v~H~HiHiiP 77 (126)
+-+|-|+||+=
T Consensus 78 g~~HPH~Hvll 88 (233)
T PF01446_consen 78 GSWHPHFHVLL 88 (233)
T ss_pred CeeccceEEEE
Confidence 34788888763
No 48
>PF14317 YcxB: YcxB-like protein
Probab=49.57 E-value=16 Score=20.08 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=16.6
Q ss_pred CceeEEEecccccCCcCCCCHHHHHHHHHHH
Q 033149 8 AFGPFKIDPRRDAVRFGDLTADETRDLWLTA 38 (126)
Q Consensus 8 ~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~ 38 (126)
..+..+++||+- +++++..++...+
T Consensus 37 ~~~~~~~iPk~~------f~~~e~~~f~~~l 61 (62)
T PF14317_consen 37 GKNQAFIIPKRA------FSEEEKEEFREFL 61 (62)
T ss_pred CCCeEEEEEHHH------CCHhHHHHHHHHh
Confidence 356789999984 3466666666554
No 49
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=48.26 E-value=1.4e+02 Score=24.43 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=12.5
Q ss_pred ceEEEEecCCCCCCccCEEEEEEeec
Q 033149 53 SLAFAIQDGPQAGQTVPHVHIHIVPR 78 (126)
Q Consensus 53 ~~ni~~~~g~~~gq~v~H~HiHiiPr 78 (126)
.|-+++|+. -.|=|+||+=+
T Consensus 120 dYV~AlH~D------~dHPHVHLvVn 139 (446)
T PRK13863 120 NYLTAFHID------RDHPHLHVVVN 139 (446)
T ss_pred eEEEEEecC------CCCCeEEEEEE
Confidence 455566543 36888888764
No 50
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=47.14 E-value=49 Score=21.59 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=30.0
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCc------cCEEEEEEeecc
Q 033149 22 RFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQT------VPHVHIHIVPRK 79 (126)
Q Consensus 22 ~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~------v~H~HiHiiPr~ 79 (126)
++.+++.+-+.+...+-+.+..+.+. .|..-+...++..+..|-+ -.|+=+|-.|-+
T Consensus 10 dly~c~~~~L~d~~~l~~~l~~a~~~-~g~ti~~~~~h~F~p~Gvt~v~llaESHisiHTwPE~ 72 (112)
T TIGR03330 10 DLYGCDPEKLDDVEFIEEILLEAAKV-AGATLVASHFHKFSPGGVSGVVLLAESHISIHTWPEY 72 (112)
T ss_pred EEeCCChHHCCCHHHHHHHHHHHHHH-cCCEEEEEEEEEcCCCcEEEEEEecccEEEEEeccCC
Confidence 57788776554444433333333333 2444344444433323311 179999999965
No 51
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=46.49 E-value=27 Score=30.43 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=13.7
Q ss_pred CceEEEEecCCCCCCccCEEEEEEee
Q 033149 52 SSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 52 ~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
.-|-++.|. +-.|+|+||+=
T Consensus 102 hQ~Vva~H~------DTdh~HiHIvi 121 (746)
T PRK13878 102 HQRVSAVHH------DTDNLHIHIAI 121 (746)
T ss_pred ceEEEEEEC------CCCCceeEEEE
Confidence 346666653 34799999885
No 52
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=44.93 E-value=41 Score=27.27 Aligned_cols=46 Identities=9% Similarity=0.089 Sum_probs=35.7
Q ss_pred CCCCCCCceeEE--EecccccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 2 SSIEQYAFGPFK--IDPRRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 2 ~~~~P~~~gh~l--IiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
|-++|++-|--| |..|+|..+--+|.++....=++.++.+...|++
T Consensus 245 pL~~PFSmGrNLlCVySKKhm~d~Pelke~K~~~N~kslk~~~~lL~~ 292 (426)
T PLN02349 245 PLCKPFSMGRNLICVHSKKHMNDDPELKEMKRKANTRTLKEMALLLRE 292 (426)
T ss_pred cccCccccCCceEEEEeccccCCChhhHHHHHHHHHHHHHHHHHHHhc
Confidence 567889888777 5599999987778777777777777777777764
No 53
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=42.91 E-value=59 Score=22.19 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=30.6
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCc------cCEEEEEEeecc
Q 033149 22 RFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQT------VPHVHIHIVPRK 79 (126)
Q Consensus 22 ~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~------v~H~HiHiiPr~ 79 (126)
++.+++.+-+.+...+-+.+..+.+. .|..-+...++.-+..|-+ -.|+=+|-.|-+
T Consensus 11 Dlygc~~~~L~d~e~l~~~l~~Aa~~-~gatil~~~~h~F~P~GvTgv~lLaESHisIHTwPE~ 73 (139)
T PRK04025 11 EAAGCDPEVLGDADRIREIFLEAAKR-GNMEVKASYFFKFSPTGVSGVVIVAESHISVHTWPEK 73 (139)
T ss_pred EEeCCChHHcCCHHHHHHHHHHHHHH-cCCeEEEEEEEEcCCCcEEEEEEeccceEEEEecccC
Confidence 57888777554444444433333333 2344344444433323311 279999999965
No 54
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=42.40 E-value=64 Score=21.50 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=30.6
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCcc------CEEEEEEeecc
Q 033149 22 RFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV------PHVHIHIVPRK 79 (126)
Q Consensus 22 ~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v------~H~HiHiiPr~ 79 (126)
++.+++.+-+.+...+-+.+..+... .|..-+...++.-+..|-+. .|+=+|-.|-+
T Consensus 13 dlygc~~~~L~d~~~l~~~l~~aa~~-~g~tiv~~~~h~F~p~GvTgv~llaESHisIHTwPE~ 75 (123)
T PRK01706 13 DLWGVDFSLLDDMYFLEHHLVEAADL-SGAHVLNVSTKEFDPQGVTVLVLLSESHLSIHTYPEK 75 (123)
T ss_pred EEeCCChHHcCCHHHHHHHHHHHHHH-cCCeEEEEEEEEcCCCcEEEEEEeeccEEEEEeCccC
Confidence 57788776555544333323333332 34444555544433233211 79999999965
No 55
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=41.55 E-value=66 Score=21.55 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=30.7
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCc------cCEEEEEEeecc
Q 033149 22 RFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQT------VPHVHIHIVPRK 79 (126)
Q Consensus 22 ~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~------v~H~HiHiiPr~ 79 (126)
++.+++.+-+.+...+-+.+..+.+.. |..-+...++..+..|-+ -.|+=+|-.|-+
T Consensus 11 dlygC~~~~L~d~~~l~~~l~~a~~~~-g~til~~~~h~F~p~GvTgv~llaESHisIHTwPE~ 73 (127)
T PRK03124 11 ELYGCDFDKLNDMELIEDIMVDAALEA-GAEVREVAFHKFSPQGVSGVVVISESHLTIHTWPEL 73 (127)
T ss_pred EEeCCChHHcCCHHHHHHHHHHHHHHc-CCeEEEEEeEEcCCCcEEEEEEeeccEEEEEeCccC
Confidence 578887765544444444334444332 444344444433323321 179999999965
No 56
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=36.67 E-value=99 Score=22.51 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCC--ceEEEEecCCCCCCccCEEEEEEeeccC
Q 033149 25 DLTADETRDLWLTAQTVGTQLESYHKAS--SLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (126)
Q Consensus 25 ~l~~~e~~~l~~~~~~v~~~l~~~~~~~--~~ni~~~~g~~~gq~v~H~HiHiiPr~~ 80 (126)
||+.++..+|.. ..++.. +... .+.+.+|.. +...||+|+=+-.|.-
T Consensus 78 EL~~eq~~~L~~---~f~~~~---~~~~G~~~d~aIH~d---~~~NpHaHim~t~R~l 126 (216)
T PF03389_consen 78 ELTLEQNIELVR---EFAQEN---FVDYGMAADVAIHDD---GPRNPHAHIMFTTRPL 126 (216)
T ss_dssp TS-HHHHHHHHH---HHHHHH---HTTTT--EEEEEEEE---TTTEEEEEEEE--B--
T ss_pred cCCHHHHHHHHH---HHHHHH---hhccceEEEEEEecC---CCCCCEEEEEeecCcc
Confidence 677777665543 333332 3333 366788852 2356777776667764
No 57
>PHA00002 A DNA replication initiation protein gpA
Probab=35.81 E-value=1.6e+02 Score=23.75 Aligned_cols=66 Identities=20% Similarity=0.078 Sum_probs=32.0
Q ss_pred ceeEEE-----ecccccCCcCCCCHHHHHHHHHHHHH-HHHHHHhhcCCC--ceEEEEecCCCCCCccCEEEEEEe
Q 033149 9 FGPFKI-----DPRRDAVRFGDLTADETRDLWLTAQT-VGTQLESYHKAS--SLAFAIQDGPQAGQTVPHVHIHIV 76 (126)
Q Consensus 9 ~gh~lI-----iPk~H~~~~~~l~~~e~~~l~~~~~~-v~~~l~~~~~~~--~~ni~~~~g~~~gq~v~H~HiHii 76 (126)
.|+++| ....|..++.+ ++..+.+++.-+.+ |..+..+..... .+.-.+..++.++|. ..+|+|.+
T Consensus 196 ~gw~~VfdtLTladDrL~df~~-npnalRdyfr~igR~Vl~aeGrsv~ds~~dcyqy~cVpEyG~qh-GRlH~H~V 269 (515)
T PHA00002 196 KGWFVVFDTLTLADDRLKAFYD-NPNALRDYFRDIGRMVLTAEGRSVHDSSSDCYQYFCVPEYGTQH-GRLHFHAV 269 (515)
T ss_pred cCeEEEEeeeeecchhhhhhcc-ChHHHHHHHHHHHHHHHHhccccccccccchheeeecccccCcc-cceEEEEE
Confidence 566666 45566666665 44555555544444 444444332111 223334455555443 44555544
No 58
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=35.09 E-value=97 Score=20.74 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=30.4
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecC-CCCCCcc------CEEEEEEeecc
Q 033149 22 RFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDG-PQAGQTV------PHVHIHIVPRK 79 (126)
Q Consensus 22 ~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g-~~~gq~v------~H~HiHiiPr~ 79 (126)
++.+++.+-+.+...+-+.+..+.+. .|..-+...++.- |..|-+. .|+=+|-.|-+
T Consensus 22 DlygC~~~~L~d~~~l~~~l~~aa~~-~g~til~~~~h~F~p~~GvT~v~lLaESHisIHTwPE~ 85 (127)
T PRK00458 22 NLYDCDEEVLKDEERLEQIVKEAAKI-ANMTLLDIKSWKFGKKGGVSVIALVLESHIAIHTWPEY 85 (127)
T ss_pred EEeCCChHHcCCHHHHHHHHHHHHHH-cCCEEEEEEEEECCCCCCEEEEEEecccEEEEEeCcCC
Confidence 68888887554444433333333332 2443344443333 3234222 79999999975
No 59
>PLN03217 transcription factor ATBS1; Provisional
Probab=34.21 E-value=48 Score=20.89 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=18.5
Q ss_pred cCCCHHHHHHHHHHHHHhhhcC
Q 033149 105 KNRTMEEMAQEADEYRSLLSKI 126 (126)
Q Consensus 105 ~~~~~~el~~l~~~lr~~l~~~ 126 (126)
...++|++.+|..+|++.|.++
T Consensus 15 ~risddqi~dLvsKLq~llPe~ 36 (93)
T PLN03217 15 SRISEDQINDLIIKLQQLLPEL 36 (93)
T ss_pred CCCCHHHHHHHHHHHHHHChHH
Confidence 4678999999999999988653
No 60
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=34.06 E-value=1e+02 Score=20.83 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=29.7
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCc------cCEEEEEEeecc
Q 033149 22 RFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQT------VPHVHIHIVPRK 79 (126)
Q Consensus 22 ~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~------v~H~HiHiiPr~ 79 (126)
++.+++.+-+.+...+-+.+..+.+. .|..-+...++..+..|-+ -.|+=+|-.|-+
T Consensus 12 dlygc~~~~L~D~~~l~~~l~~aa~~-~g~tiv~~~~h~F~p~GvTgv~lLaESHisIHTwPE~ 74 (131)
T PRK01236 12 DLYGVDPELIDRVEDIREILEGAVKY-AELTKISSHYYQFNPHGATGVVLLAESHISIHTWPEY 74 (131)
T ss_pred EEeCCChHHcCCHHHHHHHHHHHHHH-CCCEEEEEEEEEcCCCcEEEEEEeeccEEEEEeCccC
Confidence 58888877554444443333333333 2333333333333222311 179999999965
No 61
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=31.88 E-value=1.2e+02 Score=23.80 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=25.8
Q ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 033149 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (126)
Q Consensus 16 Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l 45 (126)
..+|+-++.|++.+|+..|...+..+.+..
T Consensus 2 ~~k~ll~i~dls~~ei~~ll~~A~~~k~~~ 31 (338)
T PRK02255 2 KKRDFIDTNDFTKEEILDIIELGLKLKEAI 31 (338)
T ss_pred CCCCCcchhhCCHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999988876643
No 62
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=31.85 E-value=3.5e+02 Score=23.61 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 25 DLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 25 ~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
||+.++..+|.. ..++..-...|. .+.+.+|. .++..||+|+-+--|.-+.
T Consensus 95 El~~~~~~~L~~---~f~~~~~~~~g~-~~d~aiH~---~~~~NpHaHim~t~R~~~~ 145 (744)
T TIGR02768 95 ELNLEQNIELAR---RFVRDHFVEKGM-VADWAIHD---DGDGNPHAHLLTTTRPLEE 145 (744)
T ss_pred hcCHHHHHHHHH---HHHHHHHHhCCC-eEEEEEec---CCCCCCEEEEEeeceeecc
Confidence 677777655543 222222211221 25678886 3567899999998886543
No 63
>PF13960 DUF4218: Domain of unknown function (DUF4218)
Probab=31.15 E-value=14 Score=24.96 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeec
Q 033149 26 LTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPR 78 (126)
Q Consensus 26 l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr 78 (126)
++.+++..|...+......+...|++.-+++. -|+.+|+.-.
T Consensus 18 i~~~~l~~L~~~I~~~lc~lE~ifppsffdim-----------~HL~vHL~~~ 59 (128)
T PF13960_consen 18 IDPDDLDELEEEIVETLCQLEMIFPPSFFDIM-----------VHLLVHLVDE 59 (128)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcchhHhhhh-----------HHHHHHHHHh
Confidence 67788899999888888999999988766655 4888887653
No 64
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis. S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.
Probab=28.67 E-value=83 Score=20.02 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=28.4
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCcc------CEEEEEEeeccC
Q 033149 22 RFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV------PHVHIHIVPRKA 80 (126)
Q Consensus 22 ~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v------~H~HiHiiPr~~ 80 (126)
++.+++.+.+.+...+-+.+.++++. .|...+...++.-...|-+. .|+=+|-.|-..
T Consensus 5 d~~~c~~~~L~d~~~l~~~l~~a~~~-~g~~~~~~~~~~f~p~GvT~~~ll~ESHisiHTwPE~~ 68 (106)
T PF02675_consen 5 DLYGCDPDLLNDAEALEKILRDAAKA-AGLTVLSISFHKFEPQGVTGVALLAESHISIHTWPEHG 68 (106)
T ss_dssp EEES--HHHCTSHHHHHHHHHHHHHH-CT-EEEEEEEEE-SSS-EEEEEEETTEEEEEEEEGGGT
T ss_pred EEECCChHHCCCHHHHHHHHHHHHHH-cCCEEEEEEEEEcCCCcEEEEEEhhccEEEEEeCCCcC
Confidence 46666666555544444444444443 34444444433332233222 799999999754
No 65
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=27.61 E-value=52 Score=18.41 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.7
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 033149 23 FGDLTADETRDLWLTAQTV 41 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v 41 (126)
+-+|+++|..+|..++..+
T Consensus 32 VvEl~~~Ea~~L~~~l~~v 50 (51)
T PF11314_consen 32 VVELNPDEAKELGEALKEV 50 (51)
T ss_pred EEEeCHHHHHHHHHHHHhc
Confidence 4589999999999887754
No 66
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=27.50 E-value=2.2e+02 Score=19.81 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=31.6
Q ss_pred eeEEEecccccCC---cCCCCHHHHHHHHHHHHHHHH-HHHhhcCCCceEEEEecCCCCCCccC-EEEEEEe
Q 033149 10 GPFKIDPRRDAVR---FGDLTADETRDLWLTAQTVGT-QLESYHKASSLAFAIQDGPQAGQTVP-HVHIHIV 76 (126)
Q Consensus 10 gh~lIiPk~H~~~---~~~l~~~e~~~l~~~~~~v~~-~l~~~~~~~~~ni~~~~g~~~gq~v~-H~HiHii 76 (126)
-|++|=.|...+. -.+++++....+-..+++... .+ .+.+.+-.+.| ..+-|+|. =.|+||+
T Consensus 90 ~HlVVWsK~~L~~d~~~gd~t~~~r~~I~~fv~~~f~~~~---~~~~~v~WF~N--~~~LqSV~~v~H~HVl 156 (158)
T PF12239_consen 90 VHLVVWSKFPLPVDPETGDLTPESRELIEDFVQRTFVDRL---IPEDNVLWFKN--WPSLQSVRAVEHIHVL 156 (158)
T ss_pred eEEEEEecCccccccccccccHHHHHHHHHHHHHHHHhhc---CCCccEEEEeC--chhcCCcCcceEEEEE
Confidence 4666666665432 245666666666666555432 22 24454444433 33457764 2255554
No 67
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=27.30 E-value=80 Score=19.08 Aligned_cols=21 Identities=0% Similarity=0.042 Sum_probs=18.6
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 033149 104 MKNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 104 ~~~~~~~el~~l~~~lr~~l~ 124 (126)
.|.+|+++++++...|..++.
T Consensus 20 kp~Lde~~leei~~~l~~a~~ 40 (92)
T PF08863_consen 20 KPELDEQQLEEINEKLSEAYQ 40 (92)
T ss_pred CCCCcHHHHHHHHHHHHHHhc
Confidence 577899999999999998874
No 68
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=27.25 E-value=1.8e+02 Score=22.05 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=33.6
Q ss_pred ccccCCc-CCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeecc
Q 033149 17 RRDAVRF-GDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRK 79 (126)
Q Consensus 17 k~H~~~~-~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~ 79 (126)
.|+++++ ..++++.+.++-..++..-+.+......+ ..+..|+++-++++|..
T Consensus 217 eR~~S~lT~~i~~~~~~~i~~~i~~fRk~i~~i~~~~----------~~~~~Vy~LN~qlFPlt 270 (271)
T TIGR02147 217 ERDVSTVTFGISEEAYKEIVKKIQEFRKEVLAIATKD----------KEEDRVFQLNIQLFPLS 270 (271)
T ss_pred ccccceeeEecCHHHHHHHHHHHHHHHHHHHHHHhcC----------CCcCeEEEEeeeeeccC
Confidence 4566665 45777777777777776666664432211 13356889999999863
No 69
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=26.30 E-value=1.1e+02 Score=15.99 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=16.3
Q ss_pred cCCCHHHHHHHHHHHHHhhh
Q 033149 105 KNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 105 ~~~~~~el~~l~~~lr~~l~ 124 (126)
...++|+|++....|+..++
T Consensus 10 ~~a~~e~l~~Y~~~L~~Yin 29 (36)
T smart00309 10 DDASPEDLRQYLAALREYIN 29 (36)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 45678999999999998765
No 70
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=25.99 E-value=81 Score=16.56 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhhcC
Q 033149 110 EEMAQEADEYRSLLSKI 126 (126)
Q Consensus 110 ~el~~l~~~lr~~l~~~ 126 (126)
|++.+|++.|..+..+|
T Consensus 1 e~~~~La~al~~~~~~i 17 (41)
T PF02132_consen 1 EEAEQLADALKEAKENI 17 (41)
T ss_dssp HHHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 46677777777665543
No 71
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=25.83 E-value=76 Score=24.79 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=25.6
Q ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHH
Q 033149 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (126)
Q Consensus 16 Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~ 44 (126)
..||+-++.||+.+|+..|.+.+.+....
T Consensus 6 ~~rhlis~~dls~~ei~~ll~~A~~~~~~ 34 (316)
T COG0540 6 KMRHLISIEDLSREELELLLDTADEFKAV 34 (316)
T ss_pred cccceechHhCCHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999998877765
No 72
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=25.78 E-value=99 Score=23.25 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=6.0
Q ss_pred cCCCCHHHH
Q 033149 23 FGDLTADET 31 (126)
Q Consensus 23 ~~~l~~~e~ 31 (126)
+.||++.+-
T Consensus 118 vfDLDP~~~ 126 (245)
T TIGR02778 118 VFDLDPGPG 126 (245)
T ss_pred EEECCCCCC
Confidence 567888653
No 73
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=25.77 E-value=1.1e+02 Score=15.92 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=16.2
Q ss_pred cCCCHHHHHHHHHHHHHhhh
Q 033149 105 KNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 105 ~~~~~~el~~l~~~lr~~l~ 124 (126)
...++|+|++....|+..++
T Consensus 10 ~~aspeel~~Y~~~L~~Y~~ 29 (36)
T PF00159_consen 10 DFASPEELAQYYAALRHYIN 29 (36)
T ss_dssp TTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 34678999999999998764
No 74
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=24.69 E-value=2.3e+02 Score=19.26 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=30.5
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCc------cCEEEEEEeecc
Q 033149 22 RFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQT------VPHVHIHIVPRK 79 (126)
Q Consensus 22 ~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~------v~H~HiHiiPr~ 79 (126)
++.+++.+-+.+...+-+.+..+.+. .|..-+...++.-+..|-+ -.|+=+|-.|-+
T Consensus 24 dlygc~~~~L~d~~~l~~~l~~Aa~~-~gativ~~~~h~F~P~GvTgv~lLaESHisIHTwPE~ 86 (139)
T PRK02770 24 ELYDCDAEKLNDEAFLRTTLTEAAKR-AGATLLNLITHRFEPQGVTALALLAESHISIHTWPES 86 (139)
T ss_pred EEeCCChHHCCCHHHHHHHHHHHHHH-cCCEEEEEEeEEcCCCeEEEEEEecccEEEEEeCcCC
Confidence 68888887655544444434334333 2333344433333222211 279999999965
No 75
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=24.50 E-value=1.4e+02 Score=16.69 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=23.9
Q ss_pred ccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCC--CceEEEEec
Q 033149 19 DAVRFGDLTADETRDLWLTAQTVGTQLESYHKA--SSLAFAIQD 60 (126)
Q Consensus 19 H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~--~~~ni~~~~ 60 (126)
|+.-+...++++..+|.+.+. .++.+.++. +.+.+.++.
T Consensus 5 ~i~~~~Grs~EqK~~L~~~it---~a~~~~~~~p~~~v~V~i~e 45 (60)
T PRK02289 5 RIDLFEGRSQEQKNALAREVT---EVVSRIAKAPKEAIHVFIND 45 (60)
T ss_pred EEEECCCCCHHHHHHHHHHHH---HHHHHHhCcCcceEEEEEEE
Confidence 444445678888877776554 445555565 356676654
No 76
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=23.55 E-value=1.3e+02 Score=15.74 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=16.2
Q ss_pred cCCCHHHHHHHHHHHHHhhh
Q 033149 105 KNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 105 ~~~~~~el~~l~~~lr~~l~ 124 (126)
.-.+.|+|++....|+..++
T Consensus 10 ~~a~~eel~~Y~~~L~~Yin 29 (36)
T cd00126 10 DDASPEELRQYLAALREYIN 29 (36)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 34578999999999998765
No 77
>PF13711 DUF4160: Domain of unknown function (DUF4160)
Probab=23.51 E-value=1.5e+02 Score=17.12 Aligned_cols=17 Identities=6% Similarity=-0.134 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHHHHHHh
Q 033149 106 NRTMEEMAQEADEYRSL 122 (126)
Q Consensus 106 ~~~~~el~~l~~~lr~~ 122 (126)
..+..++.++.+-+...
T Consensus 41 ~l~~k~l~~i~~~i~~~ 57 (66)
T PF13711_consen 41 FLPRKELRKILEWIEEN 57 (66)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 34566666666555543
No 78
>PF09830 ATP_transf: ATP adenylyltransferase; InterPro: IPR019200 Diadenosine 5',5'''-P-1,P-4-tetraphosphate (Ap4A) and related diadenosine oligoposphates such as Ap3A are important intracellular and extracellular signalling molecules in prokaryotes and eukaryotes []. They are implicated in the regulation of many vital celluar functions including stress response, cell division and apoptosis. Synthesis primarily occurs via aminoacyl-tRNA synthetases adding the AMP moiety of an aminoacyl-AMP to an acceptor nucleotide, and is an inevitable byproduct of protein synthesis. The concentration of these compounds must thus be controlled both to ensure the proper regulation of various celluar processes, but also to prevent their buildup to potentially toxic levels. This domain is found in a group of ATP adenylyltransferases found in bacteria and lower eukaryotes which catalyse the interconversion of Ap4A to ATP and ADP [, , ]. While these enzymes are thought to act primarily to break down Ap4A, there is evidence to suggest that in some circumstances they may also act in a biosynthetic role. Some variability in substrate range is apparent eg the cyanobacterial enzyme can also utilise Ap3A as a substrate, while the Saccharomyces enzymes apparently cannot.; GO: 0003877 ATP adenylyltransferase activity
Probab=23.10 E-value=46 Score=19.33 Aligned_cols=15 Identities=13% Similarity=-0.068 Sum_probs=11.5
Q ss_pred CceeEEEecccccCC
Q 033149 8 AFGPFKIDPRRDAVR 22 (126)
Q Consensus 8 ~~gh~lIiPk~H~~~ 22 (126)
+..+++||||++-..
T Consensus 7 T~~wm~lvPR~~~~~ 21 (62)
T PF09830_consen 7 TRRWMMLVPRSREGF 21 (62)
T ss_pred ecCeEEEEecccccc
Confidence 467889999888553
No 79
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=23.02 E-value=1.9e+02 Score=17.59 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=28.2
Q ss_pred CCCceeEEEecccccCC-cCCCCHHHHHHHHHHHHHHHHHHH
Q 033149 6 QYAFGPFKIDPRRDAVR-FGDLTADETRDLWLTAQTVGTQLE 46 (126)
Q Consensus 6 P~~~gh~lIiPk~H~~~-~~~l~~~e~~~l~~~~~~v~~~l~ 46 (126)
+..+|-.+++ |... +.-+++++..+...+++.+...+.
T Consensus 35 ~~~vGD~VLV---H~G~Ai~~ide~eA~e~l~~l~el~~~~~ 73 (76)
T TIGR00074 35 EVKVGDYVLV---HVGFAISVLDEEEARETLDALQELFDAVE 73 (76)
T ss_pred CCCCCCEEEE---ecChhhhhCCHHHHHHHHHHHHHHHHHHh
Confidence 3456666666 4443 677999999999999998887764
No 80
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=22.91 E-value=76 Score=27.57 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=18.5
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 033149 104 MKNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 104 ~~~~~~~el~~l~~~lr~~l~ 124 (126)
-+.++.+||++||+.||+.|-
T Consensus 88 lk~L~~~eL~~La~EiR~~li 108 (701)
T PLN02225 88 LKNLSVKELKLLADEIRTELH 108 (701)
T ss_pred HhhCCHHHHHHHHHHHHHHHH
Confidence 467899999999999999874
No 81
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=22.35 E-value=1.5e+02 Score=19.54 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=19.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~~ 48 (126)
+..++++|...+..+++++...+.+.
T Consensus 115 ~~~l~~ee~~~l~~~l~~l~~~l~~~ 140 (144)
T PRK03573 115 LHGISAEEIEQLITLIAKLEKNIIEL 140 (144)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 55788888888888888887766553
No 82
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=22.24 E-value=1e+02 Score=25.10 Aligned_cols=30 Identities=10% Similarity=0.264 Sum_probs=26.3
Q ss_pred EecccccCCcCCCCHHHHHHHHHHHHHHHH
Q 033149 14 IDPRRDAVRFGDLTADETRDLWLTAQTVGT 43 (126)
Q Consensus 14 IiPk~H~~~~~~l~~~e~~~l~~~~~~v~~ 43 (126)
...|+|.-++.|++.+++..|...+..+..
T Consensus 84 ~~~~r~lLsi~Dls~~ei~~Ll~~A~~lK~ 113 (429)
T PRK11891 84 FEGKPQLLSVDQFSRDSVEALFRVADVMQP 113 (429)
T ss_pred ccCCCCccchhhCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999998887765
No 83
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=22.24 E-value=87 Score=19.37 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=18.1
Q ss_pred cchhhhccCCCHHHHHHHHHHHHHhhhc
Q 033149 98 LDLDIQMKNRTMEEMAQEADEYRSLLSK 125 (126)
Q Consensus 98 ~~~~~~~~~~~~~el~~l~~~lr~~l~~ 125 (126)
+.+......++++|..++.++|..++.+
T Consensus 60 l~~~~~~~TLt~~ev~~~~~~i~~~l~~ 87 (94)
T PF03147_consen 60 LTYQSPDRTLTDEEVNEIHDKIIKALEK 87 (94)
T ss_dssp EEE--SSS---HHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444455678999999999999998853
No 84
>PRK10870 transcriptional repressor MprA; Provisional
Probab=21.94 E-value=1.5e+02 Score=20.67 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=22.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~~ 48 (126)
+..+++++...|..++.++...+.+.
T Consensus 140 ~~~ls~~e~~~l~~~L~kl~~~l~~~ 165 (176)
T PRK10870 140 WSALSTTEKDQLEQITRKLLSRLDQM 165 (176)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 56789999999999999998888764
No 85
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=21.24 E-value=1.3e+02 Score=22.27 Aligned_cols=23 Identities=17% Similarity=-0.062 Sum_probs=11.5
Q ss_pred cCCCCHHH---HHHHHHHHHHHHHHH
Q 033149 23 FGDLTADE---TRDLWLTAQTVGTQL 45 (126)
Q Consensus 23 ~~~l~~~e---~~~l~~~~~~v~~~l 45 (126)
+.||++.+ +.+..+++..+-..|
T Consensus 97 vfDLDP~~~~~f~~v~~~A~~vr~~L 122 (223)
T cd04866 97 VFDLDPPSRDHFSLAVEAANLLKEIL 122 (223)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 56788864 344444444333333
No 86
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.19 E-value=1.4e+02 Score=27.68 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=53.1
Q ss_pred cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCCCccCEEEEEEeeccCC-----CCCCCCccchhh
Q 033149 20 AVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQAGQTVPHVHIHIVPRKAA-----SSEENDGNKDVK 93 (126)
Q Consensus 20 ~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~-~~ni~~~~g~~~gq~v~H~HiHiiPr~~~-----~~~~~~~~~~~~ 93 (126)
+.++...++++...+...++.=...+.+.+++. +++++++. +-.+|++.. +....+.+|+.-
T Consensus 224 v~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk------------~Dll~GF~efF~~l~~~~r~qvwG~t 291 (1188)
T COG3523 224 VSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTK------------ADLLPGFEEFFGSLNKEEREQVWGVT 291 (1188)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEec------------ccccccHHHHHhccCHHHHhhhceec
Confidence 445777788888888888888778888888886 66666543 223554432 222234566532
Q ss_pred hccccchhhhcc----CCCHHHHHHHHHHHHHhh
Q 033149 94 EKQKLDLDIQMK----NRTMEEMAQEADEYRSLL 123 (126)
Q Consensus 94 ~~~~~~~~~~~~----~~~~~el~~l~~~lr~~l 123 (126)
|..+.... ..-.+|++.+++++.+.+
T Consensus 292 ----f~~~~~~~~~~~~~~~~e~~~L~~rl~~~l 321 (1188)
T COG3523 292 ----FPLDARRNANLAAELEQEFRLLLDRLNAQL 321 (1188)
T ss_pred ----cccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 22221111 123667888888887765
No 87
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=20.91 E-value=1.3e+02 Score=23.45 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=26.9
Q ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 16 Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
-.||.-++.|++++|+..|......+.+.-+.
T Consensus 5 ~~rhfL~l~D~t~~El~~ll~lA~~lK~~~~~ 36 (310)
T COG0078 5 AGRHFLSLLDFTPEELEALLDLAAELKAAKKA 36 (310)
T ss_pred ccccccchhcCCHHHHHHHHHHHHHHHHhhhc
Confidence 36888899999999999999988887776554
No 88
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=20.79 E-value=2.4e+02 Score=21.71 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=23.8
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 033149 18 RDAVRFGDLTADETRDLWLTAQTVGTQL 45 (126)
Q Consensus 18 ~H~~~~~~l~~~e~~~l~~~~~~v~~~l 45 (126)
+|.-++.|++.+++..|...+..+.+.-
T Consensus 1 k~ll~i~dls~~ei~~ll~~A~~~k~~~ 28 (301)
T TIGR00670 1 RHLISISDLSREEIELLLQTARELEQVL 28 (301)
T ss_pred CCcCchhhCCHHHHHHHHHHHHHHHhhh
Confidence 5788999999999999999888877643
No 89
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=20.74 E-value=1.4e+02 Score=22.23 Aligned_cols=24 Identities=21% Similarity=0.048 Sum_probs=12.2
Q ss_pred cCCCCHHH---HHHHHHHHHHHHHHHH
Q 033149 23 FGDLTADE---TRDLWLTAQTVGTQLE 46 (126)
Q Consensus 23 ~~~l~~~e---~~~l~~~~~~v~~~l~ 46 (126)
+.||++.+ +.++.+++..+-..|.
T Consensus 106 vfDLDP~~~~~f~~v~~~A~~~r~~L~ 132 (231)
T cd04863 106 VFDLDPGEPAGLVECARVALWLRDRLA 132 (231)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56788865 3444444443333333
No 90
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=20.73 E-value=1.2e+02 Score=23.69 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=25.7
Q ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 033149 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (126)
Q Consensus 16 Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l 45 (126)
..+|+-++.+|+++++..|...+..+....
T Consensus 6 ~~r~~l~~~dls~~ei~~ll~~A~~~k~~~ 35 (331)
T PRK02102 6 KGRSFLKLLDFTPEEIEYLIDLSIELKAAK 35 (331)
T ss_pred CCCCccchHHCCHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999988876643
No 91
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=20.66 E-value=1.5e+02 Score=23.12 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCCCCCCCccchhhhccccchhhhccCCCHHHHHHHHH
Q 033149 38 AQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASSEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEAD 117 (126)
Q Consensus 38 ~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~ 117 (126)
+++..+.+..++.+.++-|.. ||. +|=.+..|.|--.+-. ++. .|-....+.+||++|.+
T Consensus 228 v~~sl~gl~~al~pgG~lIyT------gQP-wHPQle~IAr~LtsHr-~g~------------~WvMRrRsq~EmD~Lv~ 287 (311)
T PF12147_consen 228 VRRSLAGLARALEPGGYLIYT------GQP-WHPQLEMIARVLTSHR-DGK------------AWVMRRRSQAEMDQLVE 287 (311)
T ss_pred HHHHHHHHHHHhCCCcEEEEc------CCC-CCcchHHHHHHHhccc-CCC------------ceEEEecCHHHHHHHHH
Confidence 334444555556688888874 454 6777777777433211 111 13456788999999886
Q ss_pred H
Q 033149 118 E 118 (126)
Q Consensus 118 ~ 118 (126)
+
T Consensus 288 ~ 288 (311)
T PF12147_consen 288 A 288 (311)
T ss_pred H
Confidence 4
No 92
>PRK11649 putative peptidase; Provisional
Probab=20.59 E-value=3.4e+02 Score=22.08 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=28.2
Q ss_pred ccCEEEEEEeeccCCCCCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhhc
Q 033149 67 TVPHVHIHIVPRKAASSEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLSK 125 (126)
Q Consensus 67 ~v~H~HiHiiPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~~ 125 (126)
+-+|+|+.|.=. +....+ -. ..+ +....++.++++++.++++..+.+
T Consensus 389 tgphLhfev~~~--g~~vnP-~~--------~~~-p~~~~l~~~~~~~F~~~~~~~~~~ 435 (439)
T PRK11649 389 TGPHLHYEVWIN--QQAVNP-LT--------AKL-PRTEGLTGKDRREYLAQVKEVVPQ 435 (439)
T ss_pred CCceEEEEEEEC--CEEcCc-cc--------ccC-CCCCCCCHHHHHHHHHHHHHHHHH
Confidence 449999999643 221110 00 111 345678889999988887776654
No 93
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=20.46 E-value=1e+02 Score=20.75 Aligned_cols=20 Identities=30% Similarity=0.159 Sum_probs=17.3
Q ss_pred ccCCCHHHHHHHHHHHHHhh
Q 033149 104 MKNRTMEEMAQEADEYRSLL 123 (126)
Q Consensus 104 ~~~~~~~el~~l~~~lr~~l 123 (126)
..-++++|..++++.|+++|
T Consensus 121 G~fL~~~eR~~la~~L~~aL 140 (140)
T PF10003_consen 121 GRFLNPEEREELARELRRAL 140 (140)
T ss_pred ccCCCHHHHHHHHHHHHhhC
Confidence 35689999999999999875
Done!