Query 033149
Match_columns 126
No_of_seqs 158 out of 1210
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 17:06:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fit_A FragIle histidine prote 100.0 8.5E-33 2.9E-37 189.6 11.0 120 3-124 27-147 (147)
2 3ksv_A Uncharacterized protein 100.0 3.2E-32 1.1E-36 187.5 12.1 111 3-126 39-149 (149)
3 3imi_A HIT family protein; str 100.0 1.6E-31 5.5E-36 183.4 9.5 111 3-124 37-147 (147)
4 3lb5_A HIT-like protein involv 100.0 7.9E-31 2.7E-35 182.6 11.5 106 3-123 56-161 (161)
5 3o0m_A HIT family protein; ssg 100.0 1.1E-30 3.7E-35 179.7 8.5 109 3-125 33-142 (149)
6 3ohe_A Histidine triad (HIT) p 100.0 6.7E-30 2.3E-34 173.7 12.2 110 3-126 27-136 (137)
7 3l7x_A SMU.412C, putative HIT- 100.0 4.4E-30 1.5E-34 180.7 10.6 109 3-124 64-172 (173)
8 2eo4_A 150AA long hypothetical 100.0 7.7E-30 2.6E-34 175.2 11.3 110 3-124 27-137 (149)
9 3i24_A HIT family hydrolase; s 100.0 2.2E-29 7.6E-34 173.3 12.7 110 3-126 27-136 (149)
10 1y23_A HIT, histidine triad pr 100.0 3E-30 1E-34 176.3 8.1 112 3-125 33-144 (145)
11 3p0t_A Uncharacterized protein 100.0 3.6E-29 1.2E-33 169.9 10.4 104 3-125 33-136 (138)
12 3r6f_A HIT family protein; str 100.0 3.3E-29 1.1E-33 169.7 8.2 104 3-125 32-135 (135)
13 3i4s_A Histidine triad protein 100.0 7.4E-28 2.5E-32 165.7 12.3 106 5-124 33-139 (149)
14 3ano_A AP-4-A phosphorylase; d 99.9 1E-27 3.5E-32 174.0 9.9 111 3-126 98-209 (218)
15 1ems_A Nitfhit, NIT-fragIle hi 99.9 1.1E-27 3.8E-32 188.3 10.1 118 3-123 323-440 (440)
16 3nrd_A Histidine triad (HIT) p 99.9 1.1E-26 3.8E-31 157.4 12.3 105 4-123 30-135 (135)
17 2oik_A Histidine triad (HIT) p 99.9 4.1E-27 1.4E-31 162.4 9.6 108 3-124 34-141 (154)
18 3n1s_A HIT-like protein HINT; 99.9 2.6E-25 8.8E-30 147.6 6.0 81 3-83 31-112 (119)
19 3o1c_A Histidine triad nucleot 99.9 1E-24 3.5E-29 146.0 5.8 81 3-83 43-123 (126)
20 4egu_A Histidine triad (HIT) p 99.9 1.7E-24 5.8E-29 143.4 6.0 81 3-83 32-113 (119)
21 3oj7_A Putative histidine tria 99.9 4.5E-24 1.5E-28 141.0 8.0 80 3-83 35-114 (117)
22 1xqu_A HIT family hydrolase; p 99.9 4.7E-23 1.6E-27 141.4 6.7 79 3-82 63-143 (147)
23 1gup_A Galactose-1-phosphate u 99.9 1.1E-21 3.7E-26 150.9 9.3 109 3-123 224-339 (348)
24 1z84_A Galactose-1-phosphate u 99.9 1.1E-21 3.7E-26 151.1 9.3 80 3-82 239-322 (351)
25 3sp4_A Aprataxin-like protein; 99.1 7.9E-12 2.7E-16 89.4 0.6 74 3-80 35-127 (204)
26 3bl9_A Scavenger mRNA-decappin 98.5 3E-07 1E-11 69.0 6.6 70 5-78 175-247 (301)
27 1vlr_A MRNA decapping enzyme; 98.4 4E-07 1.4E-11 69.4 6.6 70 5-78 222-294 (350)
28 1z84_A Galactose-1-phosphate u 98.4 7E-07 2.4E-11 68.5 7.4 67 11-77 125-191 (351)
29 1gup_A Galactose-1-phosphate u 95.9 0.02 7E-07 43.5 6.5 65 11-77 107-171 (348)
30 2pof_A CDP-diacylglycerol pyro 91.4 0.14 4.7E-06 36.8 3.0 69 6-76 46-120 (227)
31 3vg8_G Hypothetical protein TT 88.6 0.67 2.3E-05 29.4 4.2 26 51-77 76-101 (116)
32 3sds_A Ornithine carbamoyltran 55.0 13 0.00044 28.3 3.9 42 5-46 11-52 (353)
33 3ggz_E Vacuolar protein-sortin 52.0 12 0.00041 17.9 2.1 17 106-122 11-27 (29)
34 1vr7_A Adometdc, samdc, S-aden 51.4 30 0.001 22.8 4.8 59 21-80 22-86 (142)
35 2bf9_A Pancreatic hormone; tur 51.0 19 0.00065 18.1 2.9 21 104-124 9-29 (36)
36 2ns6_A Mobilization protein A; 47.0 49 0.0017 22.6 5.6 48 24-80 80-129 (185)
37 2iii_A S-adenosylmethionine de 42.2 21 0.00073 23.2 3.0 55 22-80 12-75 (135)
38 1bba_A Bovine pancreatic polyp 41.7 17 0.00057 18.3 1.8 20 105-124 10-29 (36)
39 2l60_A Peptide YY; GPCR ligand 39.8 31 0.0011 17.8 2.7 21 104-124 13-33 (41)
40 2nyx_A Probable transcriptiona 35.5 17 0.00058 23.6 1.7 26 23-48 128-153 (168)
41 4h31_A Otcase, ornithine carba 33.7 47 0.0016 25.1 4.1 31 17-47 31-61 (358)
42 4ekn_B Aspartate carbamoyltran 32.7 53 0.0018 24.3 4.1 29 18-46 2-30 (306)
43 1omh_A TRWC protein; protein-D 32.5 89 0.003 22.9 5.3 24 68-94 157-181 (293)
44 1ml4_A Aspartate transcarbamoy 32.5 44 0.0015 24.7 3.7 29 16-44 4-32 (308)
45 3gd5_A Otcase, ornithine carba 30.9 48 0.0016 24.8 3.6 30 15-44 11-40 (323)
46 2ef0_A Ornithine carbamoyltran 30.8 57 0.0019 24.1 4.0 29 16-44 8-36 (301)
47 1dxh_A Ornithine carbamoyltran 30.5 68 0.0023 24.1 4.4 30 16-45 5-34 (335)
48 4f2g_A Otcase 1, ornithine car 30.5 57 0.0019 24.2 4.0 31 17-47 6-36 (309)
49 4aik_A Transcriptional regulat 30.4 64 0.0022 20.5 3.9 26 23-48 115-140 (151)
50 1pvv_A Otcase, ornithine carba 30.2 61 0.0021 24.1 4.1 29 17-45 7-35 (315)
51 2fbh_A Transcriptional regulat 29.8 68 0.0023 19.6 3.9 24 23-46 121-144 (146)
52 3deu_A Transcriptional regulat 29.8 55 0.0019 21.1 3.5 26 23-48 137-162 (166)
53 1lgh_B LH II, B800/850, light 29.8 66 0.0023 16.9 4.0 22 21-42 3-24 (45)
54 2wh0_Q Pkcev3, protein kinase 29.4 50 0.0017 15.4 2.3 18 107-124 10-27 (31)
55 3tpf_A Otcase, ornithine carba 29.2 49 0.0017 24.5 3.5 27 18-44 3-29 (307)
56 4hbl_A Transcriptional regulat 29.2 76 0.0026 19.7 4.1 27 23-49 121-147 (149)
57 3nrv_A Putative transcriptiona 29.1 73 0.0025 19.6 4.0 25 23-47 123-147 (148)
58 1lj9_A Transcriptional regulat 28.5 75 0.0026 19.4 3.9 26 23-48 112-137 (144)
59 1oth_A Protein (ornithine tran 28.4 66 0.0022 24.0 4.0 30 16-45 5-34 (321)
60 4a8t_A Putrescine carbamoyltra 28.1 66 0.0023 24.2 4.0 31 17-47 24-54 (339)
61 3slu_A M23 peptidase domain pr 28.1 79 0.0027 24.0 4.5 18 105-122 346-363 (371)
62 1f8p_A Neuropeptide Y (PNPY); 27.7 30 0.001 17.5 1.4 20 105-124 10-29 (37)
63 3ueb_A Putative uncharacterize 27.6 57 0.0019 20.0 2.9 20 23-42 15-34 (110)
64 3bpv_A Transcriptional regulat 27.5 81 0.0028 19.0 3.9 25 23-47 112-136 (138)
65 1vlv_A Otcase, ornithine carba 27.5 72 0.0025 23.8 4.1 31 15-45 17-47 (325)
66 4a8p_A Putrescine carbamoyltra 27.1 73 0.0025 24.1 4.1 30 17-46 2-31 (355)
67 2i6u_A Otcase, ornithine carba 27.1 57 0.0019 24.1 3.5 27 18-44 3-29 (307)
68 1duv_G Octase-1, ornithine tra 27.0 72 0.0025 23.9 4.0 30 16-45 4-33 (333)
69 4amu_A Ornithine carbamoyltran 26.5 73 0.0025 24.2 4.0 32 16-47 29-60 (365)
70 3kzn_A Aotcase, N-acetylornith 26.2 60 0.002 24.4 3.5 27 17-43 23-49 (359)
71 3s2w_A Transcriptional regulat 26.2 75 0.0025 20.0 3.6 25 23-47 133-157 (159)
72 3kp7_A Transcriptional regulat 25.7 88 0.003 19.4 3.9 26 23-48 122-147 (151)
73 3csu_A Protein (aspartate carb 25.7 65 0.0022 23.9 3.5 27 17-43 6-32 (310)
74 3q98_A Transcarbamylase; rossm 25.3 76 0.0026 24.4 4.0 30 17-46 24-53 (399)
75 2w37_A Ornithine carbamoyltran 25.0 85 0.0029 23.8 4.2 30 16-45 27-56 (359)
76 2gxg_A 146AA long hypothetical 25.0 98 0.0034 18.8 4.0 25 23-47 119-143 (146)
77 2qww_A Transcriptional regulat 25.0 67 0.0023 19.9 3.2 25 23-47 128-152 (154)
78 4b8x_A SCO5413, possible MARR- 24.8 62 0.0021 20.4 3.0 26 22-47 118-143 (147)
79 3boq_A Transcriptional regulat 24.6 61 0.0021 20.3 2.9 25 23-47 131-155 (160)
80 3d6n_B Aspartate carbamoyltran 24.6 57 0.0019 24.0 3.0 26 18-43 2-27 (291)
81 3grf_A Ornithine carbamoyltran 24.4 68 0.0023 24.0 3.5 29 17-45 7-35 (328)
82 1pg5_A Aspartate carbamoyltran 24.4 60 0.0021 23.9 3.1 26 18-43 2-27 (299)
83 2eth_A Transcriptional regulat 24.1 79 0.0027 19.7 3.4 25 23-47 127-151 (154)
84 2plg_A TLL0839 protein; hypoth 23.9 1.5E+02 0.0052 19.8 4.8 41 9-52 112-156 (163)
85 1zq6_A Otcase, ornithine carba 23.9 73 0.0025 24.2 3.6 28 16-43 22-49 (359)
86 2zet_C Melanophilin; complex, 23.8 68 0.0023 21.2 3.1 22 20-41 11-32 (153)
87 1pcf_A P15, transcriptional co 23.5 90 0.0031 17.7 3.1 22 26-47 44-65 (66)
88 3r7f_A Aspartate carbamoyltran 23.5 60 0.002 24.0 3.0 26 18-43 2-27 (304)
89 4glq_A Methyl-accepting chemot 23.2 1E+02 0.0034 20.0 3.9 30 32-61 10-39 (171)
90 2a61_A Transcriptional regulat 23.0 54 0.0018 20.1 2.4 26 24-49 117-142 (145)
91 4ep1_A Otcase, ornithine carba 22.7 76 0.0026 23.9 3.5 28 16-43 34-61 (340)
92 3twe_A Alpha4H; unknown functi 22.5 67 0.0023 14.5 2.2 10 111-120 9-18 (27)
93 2it9_A Hypothetical protein; s 22.0 79 0.0027 20.4 3.0 53 24-77 32-92 (127)
94 1qys_A TOP7; alpha-beta, novel 21.4 1.2E+02 0.0041 17.9 3.5 36 20-59 49-84 (106)
95 3zzp_A TS9, ribosomal protein 21.3 90 0.0031 18.0 2.9 22 104-125 53-74 (77)
96 2cs7_A Pneumococcal histidine 21.1 40 0.0014 18.6 1.2 18 65-82 24-42 (55)
97 2lwx_A Zuotin; J-protein, mole 20.9 71 0.0024 20.0 2.5 17 105-121 61-77 (108)
98 3eco_A MEPR; mutlidrug efflux 20.8 66 0.0022 19.6 2.5 22 24-45 117-138 (139)
99 2nvn_A Hypothetical protein; s 20.7 82 0.0028 20.2 2.8 53 24-77 34-94 (122)
100 2yfk_A Aspartate/ornithine car 20.7 1.1E+02 0.0038 23.7 4.1 30 17-46 21-50 (418)
101 1pu1_A Hypothetical protein MT 20.6 1.5E+02 0.0051 18.1 3.9 21 23-43 6-26 (94)
102 2rdp_A Putative transcriptiona 20.5 87 0.003 19.2 3.0 24 23-46 125-148 (150)
103 3bdd_A Regulatory protein MARR 20.2 1.1E+02 0.0039 18.3 3.5 25 23-47 115-139 (142)
No 1
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=100.00 E-value=8.5e-33 Score=189.62 Aligned_cols=120 Identities=42% Similarity=0.580 Sum_probs=96.6
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
++.|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.+++++||+++|+|+.+||+|+|+|+|||||+.+|
T Consensus 27 d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v~HlH~HiiPr~~~d 106 (147)
T 1fit_A 27 NRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGD 106 (147)
T ss_dssp CSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCCSSSCCEEEEEECTTC
T ss_pred CCCCCCCcEEEEEEccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCccCCCccEEEEEEECCcCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhccccch-hhhccCCCHHHHHHHHHHHHHhhh
Q 033149 83 SEENDGNKDVKEKQKLDL-DIQMKNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~el~~l~~~lr~~l~ 124 (126)
..+++++|+.+.. +.. ...+..++++||+++|++||++|+
T Consensus 107 ~~~~~~v~~~~~~--~~~~~~~~~~~~~~e~~~~a~~lr~~l~ 147 (147)
T 1fit_A 107 FHRNDSIYEELQK--HDKEDFPASWRSEEEMAAEAAALRVYFQ 147 (147)
T ss_dssp ----------------------CCCCCHHHHHHHHHHHHHTTC
T ss_pred CCCcchHHHHhhh--cccccccccCCCHHHHHHHHHHHHHHhC
Confidence 9998899987542 100 013456899999999999999874
No 2
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=99.98 E-value=3.2e-32 Score=187.54 Aligned_cols=111 Identities=21% Similarity=0.365 Sum_probs=101.2
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
++.|.+|||+||+||+|+.++.||+++++.+|+.++++++++++..+++++||+++|+|+.+||+|+|+|+|||||+.+|
T Consensus 39 d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~v~HlHiHiiPR~~~d 118 (149)
T 3ksv_A 39 DINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEK 118 (149)
T ss_dssp CSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSTTTTCCSSSCCEEEEEECCTT
T ss_pred CCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecCcccCCCCCEEEEEEEecccCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhhcC
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLSKI 126 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~~~ 126 (126)
..+ .+.|.....+++++++++++||++|++|
T Consensus 119 ~g~-------------~~~w~~~~~~~~~l~~~~~~lr~~l~~~ 149 (149)
T 3ksv_A 119 TGL-------------KIGWDTVKVASDELAEDAKRYSEAIAKI 149 (149)
T ss_dssp SSC-------------CCCCCCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred CCc-------------ccCCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 322 1223456789999999999999999987
No 3
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=99.97 E-value=1.6e-31 Score=183.45 Aligned_cols=111 Identities=19% Similarity=0.275 Sum_probs=98.5
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
++.|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.+++++||+++|+|+.+||+|+|+|+|||||+.++
T Consensus 37 d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~aGq~v~HlHiHiiPR~~~~ 116 (147)
T 3imi_A 37 DISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGEN 116 (147)
T ss_dssp CTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHHHHCCSEEEEEEEESGGGTCCSSSCCEEEEEECSTT
T ss_pred cCCCCCCcEEEEEEeeccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCcccCCCcCEEEEEEeCCccCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhh
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~ 124 (126)
..++ .+|+ .....++++++++++++||++|.
T Consensus 117 ~~~~-~~~~----------~~~~~~~~~~~~~~~~~ir~~l~ 147 (147)
T 3imi_A 117 DGFG-AVWK----------SHQNEYTMENLQNIASTIANSVK 147 (147)
T ss_dssp CSEE-EEEC----------CCGGGCCHHHHHHHHHHHHHHCC
T ss_pred CCce-eecc----------ccCCCCCHHHHHHHHHHHHHhhC
Confidence 4331 2221 12356789999999999999873
No 4
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=99.97 E-value=7.9e-31 Score=182.64 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=95.6
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
++.|.+|||+|||||+|+.++.+|+++++.+|+.+++++++++++.+++++||+++|+|+.+||+|+|+|+|||||+.+|
T Consensus 56 d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~V~HlHiHiiPR~~~d 135 (161)
T 3lb5_A 56 DIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPRMEGI 135 (161)
T ss_dssp CSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEESGGGTCCSCSCCEEEEEECTTC
T ss_pred CCCcCCCcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCCCCEEEEEEEcccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhh
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLL 123 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l 123 (126)
..+. ......+++++++++++||++|
T Consensus 136 ~~~~---------------~~~~~~~~~~l~~~~~~ir~~L 161 (161)
T 3lb5_A 136 ELTP---------------HNNIITPTEILEENAKKIRAAL 161 (161)
T ss_dssp CC---------------------CCCHHHHHHHHHHHHHHC
T ss_pred CCCc---------------CcccCCCHHHHHHHHHHHHHhC
Confidence 5321 1345688999999999999875
No 5
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=99.97 E-value=1.1e-30 Score=179.68 Aligned_cols=109 Identities=23% Similarity=0.306 Sum_probs=94.4
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhh-cCCCceEEEEecCCCCCCccCEEEEEEeeccCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESY-HKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAA 81 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~-~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~ 81 (126)
++.|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++. +++++||+++|+|+.+||+|+|+|+|||||+.+
T Consensus 33 d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ni~~n~g~~aGq~v~HlHiHiiPR~~~ 112 (149)
T 3o0m_A 33 DIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNG 112 (149)
T ss_dssp CSSCSSTTCEEEEESSCCCSTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCSEEEEECCCSGGGTCCSSSCCEEEEEECTT
T ss_pred cCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCCCccceEEEEEECCccC
Confidence 6789999999999999999999999999999999999999999998 899999999999999999999999999999998
Q ss_pred CCCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhhc
Q 033149 82 SSEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLSK 125 (126)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~~ 125 (126)
|..+.. +.....+.+++++++++||++|++
T Consensus 113 d~~~~~--------------~~~~~~~~~~l~~~a~~lr~~l~~ 142 (149)
T 3o0m_A 113 DKLSFA--------------KGMVMRRDPDREESGRLLRAALAQ 142 (149)
T ss_dssp CCCCC--------------------CCCTTHHHHHHHHHHHHHH
T ss_pred CCcccc--------------cCcccCChHHHHHHHHHHHHHHHh
Confidence 843211 111122347899999999999865
No 6
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=99.97 E-value=6.7e-30 Score=173.74 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=98.2
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
+..|.+|||++|+||+|+.++.||++++..+++..++++++++.+.++++++|++ .+||+|+|+|+|||||+.+|
T Consensus 27 ~~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-----~aGq~V~HlH~HviPR~~~D 101 (137)
T 3ohe_A 27 MNDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA-----ALGNMVPQLHLHHIVRYQGD 101 (137)
T ss_dssp ESCTTSCEEEEEESCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-----ECCSSCCSCCEEEEEECTTS
T ss_pred cCCCCCCEEEEEecccccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-----eccCcCCEEEEEEeCCCCCC
Confidence 3579999999999999999999999999999999999999999999999999998 48999999999999999999
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhhcC
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLSKI 126 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~~~ 126 (126)
..|++.+|+. ..+..++++|+++++++||++|+++
T Consensus 102 ~~~p~~vw~~---------~~~~~~~~eel~~~~~~ir~~L~~~ 136 (137)
T 3ohe_A 102 PAWPGPVWGK---------QPPVPYTEEQQASVKAKLQPLLEQL 136 (137)
T ss_dssp TTTTSCCTTS---------SCCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcccccC---------CCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 7765555532 1345788999999999999999875
No 7
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=99.96 E-value=4.4e-30 Score=180.72 Aligned_cols=109 Identities=24% Similarity=0.307 Sum_probs=96.5
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
++.|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.+++++||+++|+|+.+||+|+|+|+|||||+.++
T Consensus 64 d~~P~~pgH~LVIPkrHv~~l~dL~~ee~~~L~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~V~HlHiHiIPR~~~d 143 (173)
T 3l7x_A 64 DISQATKGHTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLVPRFADS 143 (173)
T ss_dssp CTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHTHHHHHHHHHHHHTCSEEEEEECCSGGGTCCSCSCCEEEEEECC-C
T ss_pred cCCCCCCcEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCCcCEEEEEEEecccCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhh
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~ 124 (126)
..+. ..| .....+.+++++++++||++|+
T Consensus 144 ~gf~-~~~------------~~~~~~~~~l~~~~~~ir~~L~ 172 (173)
T 3l7x_A 144 DEFD-IRF------------VQHEPDFTRLGQLAEDIQKEIE 172 (173)
T ss_dssp CSCC-CCC------------CCCCCCHHHHHHHHHHHHHHHC
T ss_pred CCcc-ccc------------CCCCCCHHHHHHHHHHHHHHhc
Confidence 4432 222 2233467999999999999885
No 8
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=99.96 E-value=7.7e-30 Score=175.22 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=97.5
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
++.|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.+++++||+++|+|+.+||+|+|+|+|||||+.+|
T Consensus 27 d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHiHviPr~~~d 106 (149)
T 2eo4_A 27 DKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGD 106 (149)
T ss_dssp CSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGGTCCSCSCCEEEEEECSSC
T ss_pred CCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCCCCCcCEEEEEEECCcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C-CCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhh
Q 033149 83 S-EENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 83 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~ 124 (126)
. .++ ..|. .... .+++++++++++||++|.
T Consensus 107 ~~~~~-~~~~----------~~~~-~~~~~~~~~~~~lr~~l~ 137 (149)
T 2eo4_A 107 YPDIF-KSFK----------PRKE-QEKEYYELLQKIIRESIE 137 (149)
T ss_dssp CCTTS-CCCC----------TTSC-CCHHHHHHHHHHHHHHHH
T ss_pred Ccccc-cccC----------CCCC-CCHHHHHHHHHHHHHHHH
Confidence 4 221 1111 1234 889999999999999884
No 9
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=99.96 E-value=2.2e-29 Score=173.32 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=97.9
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
+..|.+|||+||+||+|+.++.||++++..+++..++++++++.+.++++++|++. +||+|+|+|+|||||+.+|
T Consensus 27 ~~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~-----aGq~V~HlH~HvIPR~~~D 101 (149)
T 3i24_A 27 IKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGA-----LGNLVPQLHIHHIARFTTD 101 (149)
T ss_dssp ECBSSTTEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE-----CCSSCCSCCEEEEEECTTS
T ss_pred cCCCCCCEEEEEeCccccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhh-----hhCCCCEEEEEEeCCccCC
Confidence 35799999999999999999999999999999999999999999999999999983 8999999999999999999
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhhcC
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLSKI 126 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~~~ 126 (126)
..|++.+|+. ..+..++++++++++++||++|+++
T Consensus 102 ~~~~~~vw~~---------~~~~~~~~eel~~~a~kIr~~L~~~ 136 (149)
T 3i24_A 102 VAWPGPVWGN---------TTGVIRAQSSQTQLVDLLRDKLSNI 136 (149)
T ss_dssp TTTTSCSTTC---------SCCCBCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCcceecC---------CCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 7776555542 1345688999999999999999764
No 10
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=99.96 E-value=3e-30 Score=176.27 Aligned_cols=112 Identities=17% Similarity=0.253 Sum_probs=97.8
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
++.|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.+++++||+++|+|+.+||+|+|+|+|||||+.++
T Consensus 33 ~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~g~~v~HlH~HiiPr~~~~ 112 (145)
T 1y23_A 33 DISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKG 112 (145)
T ss_dssp CTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEEEEEEEESGGGTCCSSSCCEEEEEECSTT
T ss_pred CCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcCCCCCcCEEEEEEEccccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhhc
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLSK 125 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~~ 125 (126)
..+. ..| .......+++++++++++||+.|.+
T Consensus 113 ~~~~-~~~----------~~~~~~~~~~~~~~~~~~lr~~l~~ 144 (145)
T 1y23_A 113 DGFG-AVW----------KTHADDYKPEDLQNISSSIAKRLAS 144 (145)
T ss_dssp CSEE-EEE----------CCCGGGSCHHHHHHHHHHHHHHTC-
T ss_pred CCcc-ccc----------CCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 3221 011 0113467899999999999999864
No 11
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=99.96 E-value=3.6e-29 Score=169.93 Aligned_cols=104 Identities=20% Similarity=0.352 Sum_probs=92.9
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
++.|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.++++++|+.. +||+|+|+|+|||||+.+|
T Consensus 33 d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~-----~gq~v~HlH~HiiPr~~~d 107 (138)
T 3p0t_A 33 TIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGLII-----AGLEVPHLHVHVFPTRSLS 107 (138)
T ss_dssp CSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEE-----CCSSCSSCCEEEEEESCGG
T ss_pred cCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEE-----CCcccCEEEEEEeccccCC
Confidence 68899999999999999999999999999999999999999999999999999974 7999999999999999886
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhhc
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLSK 125 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~~ 125 (126)
.. .+.+.....+++++++++++||++|++
T Consensus 108 ~~--------------~~~~~~~~~~~~~l~~~~~~l~~~l~~ 136 (138)
T 3p0t_A 108 DF--------------GFANVDRNPSPESLDEAQAKIKAALAQ 136 (138)
T ss_dssp GS--------------SSTTCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CC--------------cccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 21 111335678899999999999999975
No 12
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=99.96 E-value=3.3e-29 Score=169.74 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=90.4
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
++.|.+|||+||+||+|+.++.||+++++.+|+.+++++++++ ++++||+++|+|+ ||+|+|+|+|||||+.+|
T Consensus 32 d~~p~~pgh~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~~----~~~~~ni~~n~g~--gq~v~HlH~HiiPR~~~d 105 (135)
T 3r6f_A 32 DRYPLSKGHFLVIPKAHHPYLHNYKPEELSGVLDTIRHLVQKF----GFERYNILQNNGN--HQEVFHVHFHVIPFVSAD 105 (135)
T ss_dssp CSSCSSTTCEEEEESSCCSSGGGSCGGGGTTHHHHHHHHHHHH----TCCSEEEECCSSS--SCSSSSCCEEEEECCBTT
T ss_pred CCCCCCCCeEEEEEhhHhCCHhHCCHHHHHHHHHHHHHHHHHh----CCCCeEEEEEcCC--CCCccEEEEEEeccccCC
Confidence 6889999999999999999999999999999999999887764 6789999999998 999999999999999886
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhhc
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLSK 125 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~~ 125 (126)
..+ .+.|.....+++++++++++||++|++
T Consensus 106 ~g~-------------~~~~~~~~~~~~~l~~~~~~ir~~l~~ 135 (135)
T 3r6f_A 106 ERL-------------MINWKAKSVSDKEYSEMVEEARLRVSS 135 (135)
T ss_dssp BSC-------------CCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCc-------------eecCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 322 122344567999999999999999864
No 13
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=99.95 E-value=7.4e-28 Score=165.70 Aligned_cols=106 Identities=24% Similarity=0.302 Sum_probs=93.9
Q ss_pred CCCCceeEEEeccc-ccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCCC
Q 033149 5 EQYAFGPFKIDPRR-DAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASS 83 (126)
Q Consensus 5 ~P~~~gh~lIiPk~-H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~~ 83 (126)
.|.+++|+|||||+ |+.++.||+++++.+++.+++++++++++.++++++|+. .+||+|+|+|+|||||+.+|.
T Consensus 33 ~~~~~~H~LVIPk~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~-----~aGq~V~HlH~HvIPR~~~D~ 107 (149)
T 3i4s_A 33 KDANYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIA-----ALGNLVPQLHVHIIARRTGDA 107 (149)
T ss_dssp SCTTSCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-----ECCSSCCSCCEEEEEECTTST
T ss_pred CCCCCCEEEEEecccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-----ecCCcCCEEEEEEECCcCCCC
Confidence 45567899999999 899999999999999999999999999999999999997 489999999999999999998
Q ss_pred CCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhh
Q 033149 84 EENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~ 124 (126)
.|++.+|+. ..+..++++++++++++||++|.
T Consensus 108 ~~p~pvw~~---------~~~~~~~~eel~~~a~~Ir~~L~ 139 (149)
T 3i4s_A 108 AWPRPVWGV---------MQPLAHDATEVQNFISALRRKIW 139 (149)
T ss_dssp TTTSCCTTT---------SCCCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCccccCC---------CcCCCCCHHHHHHHHHHHHHHHh
Confidence 776556542 13457899999999999999874
No 14
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=99.95 E-value=1e-27 Score=174.01 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=96.7
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCcc-CEEEEEEeeccCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV-PHVHIHIVPRKAA 81 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v-~H~HiHiiPr~~~ 81 (126)
++.|++|||+|||||+|+.++.+|+++++.+|+.+++++.+++++.+++++||+++|+|+.+||+| +|+|+|||||+.+
T Consensus 98 d~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L~~l~~~v~~~l~~~~~~~g~ni~~n~G~~aGq~V~~HlHiHIIPR~~g 177 (218)
T 3ano_A 98 NLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGFNVGLNLGTSAGGSLAEHLHVHVVPRWGG 177 (218)
T ss_dssp CSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHCCCSEEEEEEEESGGGTCTTTTSCCEEEEEECTT
T ss_pred ccCCCCCcEEEEEechhhCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCcccCEEEEEEEcccCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999 9999999999988
Q ss_pred CCCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhhcC
Q 033149 82 SSEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLSKI 126 (126)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~~~ 126 (126)
|..+. .+|+ .....++++++++++||++|.++
T Consensus 178 d~~f~-~v~g------------~~~~~~~~l~~~~~~Lr~al~~~ 209 (218)
T 3ano_A 178 DANFI-TIIG------------GSKVIPQLLRDTRRLLATEWARQ 209 (218)
T ss_dssp GGGCC-CCC-----------------CCHHHHHHHHHHHHHHHTC
T ss_pred CCCcc-cccc------------cccCCHHHHHHHHHHHHHHHHhh
Confidence 84332 2221 12456689999999999998764
No 15
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.95 E-value=1.1e-27 Score=188.33 Aligned_cols=118 Identities=40% Similarity=0.590 Sum_probs=95.5
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
++.|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.+++++||+++|+|+.+||+|+|+|+|||||+.+|
T Consensus 323 ~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~~gq~v~HlH~Hiipr~~~d 402 (440)
T 1ems_A 323 NLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGD 402 (440)
T ss_dssp CSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGGTCCSSSCCEEEEEECSSC
T ss_pred cCCcCCCCeEEEEEccccCChhHCCHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCCCccEEEEEEeCCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhh
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLL 123 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l 123 (126)
..++ .+|+.+... ..+..+..+++++|++++++||++|
T Consensus 403 ~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (440)
T 1ems_A 403 FGDN-EIYQKLASH--DKEPERKPRSNEQMAEEAVVYRNLM 440 (440)
T ss_dssp C----------------------CCCHHHHHHHHHHHHTTC
T ss_pred CCcc-hhHHHhhhc--ccccccCCCCHHHHHHHHHHHHhhC
Confidence 7766 677654421 1112356789999999999999865
No 16
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=99.94 E-value=1.1e-26 Score=157.44 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=91.7
Q ss_pred CCCCCceeEEEecc-cccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 4 IEQYAFGPFKIDPR-RDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 4 ~~P~~~gh~lIiPk-~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
..|..|| ++|||| +|+.++.||++++..+++..++++++++.+.++++++|++ .+||+|+|+|+|||||+.+|
T Consensus 30 ~~~~~p~-~lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-----~aGq~V~HlH~HviPR~~~D 103 (135)
T 3nrd_A 30 NDRRWPW-LILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-----ALGNIVRQLHVHVIARREGD 103 (135)
T ss_dssp SCTTSCE-EEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-----ECCSSCCSCCEEEEEECTTS
T ss_pred CCCCCCE-EEEEcCccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-----eccCCCCEEEEEEecCCCCC
Confidence 4688886 567777 7999999999999999999999999999999999999997 48999999999999999999
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhh
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLL 123 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l 123 (126)
..|++.+|+. ..+..++++++++++++||++|
T Consensus 104 ~~~~~~~~~~---------~~~~~~~~~el~~~a~~i~~~L 135 (135)
T 3nrd_A 104 PNWPGPVWGF---------GKAEPWPEEEHRTFAARIMENL 135 (135)
T ss_dssp TTTTSCSTTC---------SCCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCC---------CCCCCCCHHHHHHHHHHHHhhC
Confidence 8776655542 2345789999999999999875
No 17
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=99.94 E-value=4.1e-27 Score=162.44 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=89.0
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
++.|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.++++++|++ .+||+|+|+|+|||||+.+|
T Consensus 34 d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~g~ni~-----~~gq~v~HlHiHiiPr~~~d 108 (154)
T 2oik_A 34 VENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKINLA-----SLGNMTPHVHWHVIPRFKRD 108 (154)
T ss_dssp CCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE-----ECCSSSCSCEEEEEEECTTS
T ss_pred cCCCCCCeEEEEEecCCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEhH-----HhCCCCCEEEEEEeCCCCCC
Confidence 5789999999999999999999999999999999999999999999999999998 37899999999999999988
Q ss_pred CCCCCccchhhhccccchhhhccCCCHHHHHHHHHHHHHhhh
Q 033149 83 SEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~lr~~l~ 124 (126)
..|+...|+. ..+...+.+++++++++||++|.
T Consensus 109 ~~~~~~~w~~---------~~~~~~~~~~~~~~~~~l~~~l~ 141 (154)
T 2oik_A 109 RHFPNSVWGE---------TKRESLPQALDQGSTTALKKAIS 141 (154)
T ss_dssp SSTTSCTTSC---------CCSCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCccccCC---------CccccchhHHHHHHHHHHHHHHH
Confidence 6554334431 01122344566777777777664
No 18
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=99.91 E-value=2.6e-25 Score=147.62 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=68.4
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceEEEEecCCCCCCccCEEEEEEeeccCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLES-YHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAA 81 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~-~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~ 81 (126)
++.|.+|||+||+||+|+.++.||+++|...++.+++.+.+.+++ .+++++||+++|+|+.+||+|+|+|+|||||++.
T Consensus 31 d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~g~ni~~n~g~~agq~V~HlH~Hiipr~~~ 110 (119)
T 3n1s_A 31 DISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110 (119)
T ss_dssp CSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTTCEEEEEEEHHHHTCCSSSCCEEEEESSCC
T ss_pred CCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCCcCCCcCEEEEEEeCCccc
Confidence 678999999999999999999999999766666555544444443 4778999999999999999999999999999876
Q ss_pred CC
Q 033149 82 SS 83 (126)
Q Consensus 82 ~~ 83 (126)
.+
T Consensus 111 ~~ 112 (119)
T 3n1s_A 111 GP 112 (119)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 19
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=99.90 E-value=1e-24 Score=145.96 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=67.7
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
++.|.+|||+||+||+|+.++.+|++++...++.+++.+.+.++....+++||+++|+|+.+||+|+|+|+|||||.+..
T Consensus 43 d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~~g~ni~~n~g~~agq~v~HlH~Hiipr~~~~ 122 (126)
T 3o1c_A 43 DISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMN 122 (126)
T ss_dssp CSSCSSSEEEEEEESSCCCCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEECCCHHHHTCCSSSCCEEEEESSCCC
T ss_pred CCCCCCCceEEEEechHhchHhhCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCccCCccCEeEEEEeCCcccC
Confidence 67899999999999999999999999887666666654444444444467999999999999999999999999998766
Q ss_pred C
Q 033149 83 S 83 (126)
Q Consensus 83 ~ 83 (126)
+
T Consensus 123 ~ 123 (126)
T 3o1c_A 123 W 123 (126)
T ss_dssp S
T ss_pred C
Confidence 4
No 20
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=99.90 E-value=1.7e-24 Score=143.38 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=67.5
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhh-cCCCceEEEEecCCCCCCccCEEEEEEeeccCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESY-HKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAA 81 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~-~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~ 81 (126)
++.|.+|||+||+||+|+.++.+|+++|...|+.+++.+.+..+.. +++++||+++|+|+.+||+|+|+|+|||||+..
T Consensus 32 d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ni~~n~g~~agq~v~HlH~Hiip~~~~ 111 (119)
T 4egu_A 32 DLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKL 111 (119)
T ss_dssp CSSCSSSEEEEEEESSCCSSGGGSCGGGTHHHHHHHHHHHHHHHHHTHHHHCEEEEEEETTTTTCCSCSCCEEEEESSCC
T ss_pred CCCCCCCceEEEEechhhCCHhHCCHhHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCCCCCcCEEEEEEeCCccc
Confidence 6899999999999999999999999997777777666433333332 346799999999999999999999999999876
Q ss_pred CC
Q 033149 82 SS 83 (126)
Q Consensus 82 ~~ 83 (126)
+.
T Consensus 112 ~~ 113 (119)
T 4egu_A 112 PN 113 (119)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 21
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=99.90 E-value=4.5e-24 Score=141.03 Aligned_cols=80 Identities=20% Similarity=0.192 Sum_probs=69.4
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEeeccCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~~~ 82 (126)
++.|.+|||+||+||+|+.++.||+++|...++.+++.+.+.+++.++ ++||+++|+|+.+||+|+|+|+|||||.+..
T Consensus 35 d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~-~g~ni~~n~g~~agq~v~H~H~Hiipr~~~~ 113 (117)
T 3oj7_A 35 DINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECP-EGYRVVNNIGEDAGQTVKHIHFHILGGKKLA 113 (117)
T ss_dssp CSSCSSSEEEEEEESSCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCT-TCEEEECCCSTTTTCCSSSCCEEEEESSCCC
T ss_pred CCCCCCCceEEEEechHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCCCCCCeeeeEEEEEEeCCCCCC
Confidence 678999999999999999999999999887777777755555555454 4999999999999999999999999998766
Q ss_pred C
Q 033149 83 S 83 (126)
Q Consensus 83 ~ 83 (126)
+
T Consensus 114 ~ 114 (117)
T 3oj7_A 114 W 114 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 22
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=99.88 E-value=4.7e-23 Score=141.42 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=67.1
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC--CCceEEEEecCCCCCCccCEEEEEEeeccC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHK--ASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~--~~~~ni~~~~g~~~gq~v~H~HiHiiPr~~ 80 (126)
++.|.+|||+||+||+|+.++.||+++|..+++.+++ +++.+.+.++ +++||+++|+|+.+||+|+|+|+|||||++
T Consensus 63 d~~P~~pgH~LViPkrHv~~l~dL~~~e~~~l~~l~~-~~~~v~~~~~~~~~gyni~~n~g~~aGq~v~HlHlHiiP~~~ 141 (147)
T 1xqu_A 63 DINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHK-AANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVD 141 (147)
T ss_dssp CSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHH-HHHHHHHHTTCTTTCEEEECCCSTTTTCCSCSCCEEEEESSC
T ss_pred ecCCCCccEEEEEeCcccCChhHCCHHHHHHHHHHHH-HHHHHHHHhCCCCCCEEEEEecCcccCCCccEEEEEEeCCCc
Confidence 6889999999999999999999999988777777777 3344444444 569999999999999999999999999986
Q ss_pred CC
Q 033149 81 AS 82 (126)
Q Consensus 81 ~~ 82 (126)
.+
T Consensus 142 ~~ 143 (147)
T 1xqu_A 142 MG 143 (147)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 23
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=99.86 E-value=1.1e-21 Score=150.86 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=89.2
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCC--CCccCEEEEEEee--
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQA--GQTVPHVHIHIVP-- 77 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~-~~ni~~~~g~~~--gq~v~H~HiHiiP-- 77 (126)
++.|.+|||++|+||+|+.++.+|+++++.+|+.+++++++++.+.++++ +||+++|.++.. ||+++|+|+||+|
T Consensus 224 ~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~~~~~~~~Yn~g~~~~p~~g~~q~v~HlHiHiiPpl 303 (348)
T 1gup_A 224 PYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (348)
T ss_dssp CTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECCCSSSSCCTTCCCEEEEECCB
T ss_pred ccCCCCceEEEEEeCcccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCCCCCcccEEEEEEecch
Confidence 67899999999999999999999999999999999999999999999997 999999999875 4899999999999
Q ss_pred -ccCCCCCCCCccchhhhccccchhh-hccCCCHHHHHHHHHHHHHhh
Q 033149 78 -RKAASSEENDGNKDVKEKQKLDLDI-QMKNRTMEEMAQEADEYRSLL 123 (126)
Q Consensus 78 -r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~el~~l~~~lr~~l 123 (126)
|+.++..+. . .+.. .... .+...++.|++||+++
T Consensus 304 ~R~~~~~~~~-~----------g~e~~~~~~-~~~~pE~~A~~Lr~~~ 339 (348)
T 1gup_A 304 LRSATVRKFM-V----------GYEMLAETQ-RDLTAEQAAERLRAVS 339 (348)
T ss_dssp CSSSSCBCCC-C----------THHHHTCCE-ESSCHHHHHHHHHTSC
T ss_pred hccCCcccce-e----------eEecccCCC-CCCCHHHHHHHHHhhh
Confidence 988763321 0 1111 1111 2334678899999876
No 24
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=99.86 E-value=1.1e-21 Score=151.07 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=75.8
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCC----CccCEEEEEEeec
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAG----QTVPHVHIHIVPR 78 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~g----q~v~H~HiHiiPr 78 (126)
++.|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++.+.+++++||+++|+++.+| |+++|+|+||+||
T Consensus 239 ~~~p~~P~h~lViPk~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~~~~~~~yn~~~n~gp~~g~~~~q~v~HlHiHiiPR 318 (351)
T 1z84_A 239 PFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQ 318 (351)
T ss_dssp CTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECCCTTCCGGGGGGCCCEEEEEEC
T ss_pred ccCCCCCeEEEEEeccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCccceEEEEEEcc
Confidence 578999999999999999999999999999999999999999999999999999999999887 7999999999999
Q ss_pred cCCC
Q 033149 79 KAAS 82 (126)
Q Consensus 79 ~~~~ 82 (126)
++..
T Consensus 319 ~~~~ 322 (351)
T 1z84_A 319 LSGV 322 (351)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8543
No 25
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=99.12 E-value=7.9e-12 Score=89.36 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=48.7
Q ss_pred CCCCCCceeEEEecccccCCcCCCCHH------HHHHHHHHHH-H-HHHHHHh------hc-CC----CceEEEEecCCC
Q 033149 3 SIEQYAFGPFKIDPRRDAVRFGDLTAD------ETRDLWLTAQ-T-VGTQLES------YH-KA----SSLAFAIQDGPQ 63 (126)
Q Consensus 3 ~~~P~~~gh~lIiPk~H~~~~~~l~~~------e~~~l~~~~~-~-v~~~l~~------~~-~~----~~~ni~~~~g~~ 63 (126)
++.|.++||+|||||+|+.++.+..+. .+..|..++. + +.+.... .+ +. ..++++++
T Consensus 35 D~~P~a~~H~LVIPk~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~GfH---- 110 (204)
T 3sp4_A 35 DMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFH---- 110 (204)
T ss_dssp CSSCSSSSEEEEEECCTTTTTSCHHHHHHHCHHHHHHHHHHHHTTTHHHHHHHHHHHSCTTCCHHHHHTTEEEEEE----
T ss_pred CCCCCCCccEEEEeccccCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcCCeeeeEeccCC----
Confidence 789999999999999999998875542 2334444444 3 2222210 01 11 14777776
Q ss_pred CCCccCEEEEEEeeccC
Q 033149 64 AGQTVPHVHIHIVPRKA 80 (126)
Q Consensus 64 ~gq~v~H~HiHiiPr~~ 80 (126)
+++++.|+|+|||-+-.
T Consensus 111 a~PSm~HLHLHVIS~Df 127 (204)
T 3sp4_A 111 AGPSMNNLHLHIMTLDH 127 (204)
T ss_dssp SSCSSSSCCEEEEESCC
T ss_pred CCCcccceeEEEeccCC
Confidence 56799999999998643
No 26
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=98.47 E-value=3e-07 Score=68.99 Aligned_cols=70 Identities=16% Similarity=0.072 Sum_probs=56.5
Q ss_pred CCCCceeEEEecccc-cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC--CCceEEEEecCCCCCCccCEEEEEEeec
Q 033149 5 EQYAFGPFKIDPRRD-AVRFGDLTADETRDLWLTAQTVGTQLESYHK--ASSLAFAIQDGPQAGQTVPHVHIHIVPR 78 (126)
Q Consensus 5 ~P~~~gh~lIiPk~H-~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~--~~~~ni~~~~g~~~gq~v~H~HiHiiPr 78 (126)
+|...-|+|+||++| +.|+.+|+.+.+.-|..+.....+.+.+.+| .+.+.+++|-.| +++|+|+||+..
T Consensus 175 ~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~~~~~i~~~y~~~~~~~rlgfHy~P----S~yHLHlHvis~ 247 (301)
T 3bl9_A 175 QQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLP----SYYHLHVHFTAL 247 (301)
T ss_dssp SCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEESSC----SSSSCEEEEEET
T ss_pred CcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeEEEecCCC----CcceEEEEEEec
Confidence 488999999999988 9999999999876666666656666666555 557999999877 579999999964
No 27
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=98.44 E-value=4e-07 Score=69.38 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=56.7
Q ss_pred CCCCceeEEEecccc-cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC--CCceEEEEecCCCCCCccCEEEEEEeec
Q 033149 5 EQYAFGPFKIDPRRD-AVRFGDLTADETRDLWLTAQTVGTQLESYHK--ASSLAFAIQDGPQAGQTVPHVHIHIVPR 78 (126)
Q Consensus 5 ~P~~~gh~lIiPk~H-~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~--~~~~ni~~~~g~~~gq~v~H~HiHiiPr 78 (126)
+|...-|+|+||++| +.|+.+|+.+.+.-|..+.....+.+.+.+| .+.+.+++|-.| +++|+|+||+..
T Consensus 222 ~~~~~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~~~~ii~~~yg~~~~~lRlgfHy~P----S~yHLHlHvis~ 294 (350)
T 1vlr_A 222 QQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRLRVYLHYLP----SYYHLHVHFTAL 294 (350)
T ss_dssp SCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEESSC----SSSSCEEEEEET
T ss_pred CccccceEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeEEEecCCC----CcceEEEEEEec
Confidence 488999999999988 9999999999876666666666666666555 557999999877 579999999964
No 28
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=98.40 E-value=7e-07 Score=68.50 Aligned_cols=67 Identities=13% Similarity=0.264 Sum_probs=62.4
Q ss_pred eEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEee
Q 033149 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 11 h~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
+|+|.+.+|..++.+|+.+++.++..+.+.-.+.|.+..+...++++.|.|+.+|.+.+|.|.||+.
T Consensus 125 ~Vii~sp~H~~~l~~ls~~e~~~vi~~~~~~~~~L~~~~~~~yv~iF~N~G~~aGaSl~HpH~QI~a 191 (351)
T 1z84_A 125 DVVIESPVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMA 191 (351)
T ss_dssp EEEECCSSSSCCGGGSCHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEE
T ss_pred EEEEeCCCCCCCcHHCCHHHHHHHHHHHHHHHHHHhcccCCCEEEEEEEcCcccCCCCcCccceeEe
Confidence 7899999999999999999999999999998888888777778999999999999999999999985
No 29
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=95.86 E-value=0.02 Score=43.49 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=52.5
Q ss_pred eEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEee
Q 033149 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 11 h~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
.|+|-..+|-.++.+|+.+++..+..+...-...|.. +..-+.+.-|.|+.+|.+.+|-|..|+.
T Consensus 107 ~VIi~sp~H~~~l~~l~~~~~~~vi~~~~~r~~~l~~--~~~yV~iF~N~G~~~G~Sl~HpH~Qi~a 171 (348)
T 1gup_A 107 RVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGK--TYPWVQVFENKGAAMGCSNPHPGGQIWA 171 (348)
T ss_dssp EEEESCSCTTCCGGGSCHHHHHHHHHHHHHHHHHHHH--HCSEEEEEEEESGGGTCSCCSSEEEEEE
T ss_pred EEEEcCCcccCChhhCCHHHHHHHHHHHHHHHHHHhh--cCCEEEEecccCCcCCcCCCCCceeEEe
Confidence 4556667999999999999999999988887777763 2333556778899999999999999973
No 30
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=91.35 E-value=0.14 Score=36.85 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=50.7
Q ss_pred CCCceeEEEecccccCCcCC---C---CHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCEEEEEEe
Q 033149 6 QYAFGPFKIDPRRDAVRFGD---L---TADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (126)
Q Consensus 6 P~~~gh~lIiPk~H~~~~~~---l---~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v~H~HiHii 76 (126)
+.-|.|.|+||...++-+.+ + ++.-+..-+..-..+.+++++-+..+.+.+.+|.. .|.+-.|+||||-
T Consensus 46 ~~Gp~qyLLmPt~rItGIEsP~Ll~~~~pnYf~~AW~aR~~v~~~~g~pipd~~lsLaINS~--~gRSQnQLHIHIs 120 (227)
T 2pof_A 46 LNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSR--TGRTQNHFHIHIS 120 (227)
T ss_dssp SSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGEEEEEBCG--GGCSCCSCCEEEE
T ss_pred CCCCceEEEeccccccCccChhhcCCCCCcHHHHHHHHhHHHHHhhCCCCCccceEEEecCC--CCccccceeeehh
Confidence 34578999999888776653 2 23346666666667888888888777899998864 4677789999975
No 31
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B), unknown function; 2.20A {Thermus thermophilus}
Probab=88.62 E-value=0.67 Score=29.42 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=21.1
Q ss_pred CCceEEEEecCCCCCCccCEEEEEEee
Q 033149 51 ASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (126)
Q Consensus 51 ~~~~ni~~~~g~~~gq~v~H~HiHiiP 77 (126)
.+.+++.+|.| -.|-++||.|+|++=
T Consensus 76 vDHVdi~~~~g-HpGve~PHyhI~l~~ 101 (116)
T 3vg8_G 76 IDHVNMIPSGP-HPGVSEPHYHIELVL 101 (116)
T ss_dssp CCEEEEEECCC-CTTCCSCEEEEEEES
T ss_pred cceEEEecCCC-CCCcccCceEEEEEE
Confidence 56799999744 468999999999874
No 32
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=54.98 E-value=13 Score=28.28 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=26.9
Q ss_pred CCCCceeEEEecccccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 033149 5 EQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (126)
Q Consensus 5 ~P~~~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~ 46 (126)
+|+..+..-....||.-++.||+.+|+..|...+..+.+..+
T Consensus 11 ~~~~~~~~~~~~~rhlLsi~dls~~ei~~ll~~A~~lK~~~~ 52 (353)
T 3sds_A 11 RPYTNGSHAPSTPRHLLSIADLTPTEFATLVRNASSYKKTIK 52 (353)
T ss_dssp -----------CCCCBSCGGGSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCccCCCcccccCCCcCchhhCCHHHHHHHHHHHHHHHHHhh
Confidence 455555555666899999999999999999999888776543
No 33
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=51.97 E-value=12 Score=17.90 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHh
Q 033149 106 NRTMEEMAQEADEYRSL 122 (126)
Q Consensus 106 ~~~~~el~~l~~~lr~~ 122 (126)
..+++.-++||+|||..
T Consensus 11 ~~~eekEDkLAqRLRAL 27 (29)
T 3ggz_E 11 NVDDEKEDKLAQRLRAL 27 (29)
T ss_pred CccchhhHHHHHHHHHH
Confidence 36778888999999974
No 34
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*
Probab=51.40 E-value=30 Score=22.76 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=33.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCcc------CEEEEEEeeccC
Q 033149 21 VRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV------PHVHIHIVPRKA 80 (126)
Q Consensus 21 ~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v------~H~HiHiiPr~~ 80 (126)
.++.+++++.+.+...+-+.+..+.+. .|..-+++.++.....|-+. .|+=+|-.|-+.
T Consensus 22 ~DlygC~~~~L~D~e~l~~~l~eAa~~-~gatvl~~~~h~F~P~GvSgvvllaESHIsIHTwPE~g 86 (142)
T 1vr7_A 22 AEFYECDREVLDNVQLIEQEMKQAAYE-SGATIVTSTFHRFLPYGVSGVVVISESHLTIHTWPEYG 86 (142)
T ss_dssp EEEESCCHHHHTCHHHHHHHHHHHHHH-HTCCEEEEEEEECSSSCEEEEEEETTEEEEEEEEGGGT
T ss_pred EEEcCCChHHCCCHHHHHHHHHHHHHH-cCCEEeEEEEEEcCCCCeEEEEEecccEEEEEeCCCCC
Confidence 368888887665444433333333333 35555666555432233222 799999999653
No 35
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=51.02 E-value=19 Score=18.09 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=17.4
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 033149 104 MKNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 104 ~~~~~~~el~~l~~~lr~~l~ 124 (126)
....+.|+|++....||..++
T Consensus 9 G~dA~~Eela~Y~~~LrhYiN 29 (36)
T 2bf9_A 9 GDDAPVEDLIRFYNDLQQYLN 29 (36)
T ss_dssp CTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 345789999999999998775
No 36
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=46.97 E-value=49 Score=22.57 Aligned_cols=48 Identities=29% Similarity=0.419 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCCCc--eEEEEecCCCCCCccCEEEEEEeeccC
Q 033149 24 GDLTADETRDLWLTAQTVGTQLESYHKASS--LAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (126)
Q Consensus 24 ~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~--~ni~~~~g~~~gq~v~H~HiHiiPr~~ 80 (126)
.||+.++..+|.. ..++. .+...+ +.+.+|.. |...||+|+=+--|.-
T Consensus 80 ~EL~~eq~~~L~~---~f~~~---~~~~~G~~~d~AIH~~---~~~NpHaHim~t~R~~ 129 (185)
T 2ns6_A 80 VELTLDQQKALAS---EFAQH---LTGAERLPYTLAIHAG---GGENPHCHLMISERIN 129 (185)
T ss_dssp TTSCHHHHHHHHH---HHHHH---HHTTTTCCEEEEEEEE---TTTEEEEEEEECCBCC
T ss_pred ccCCHHHHHHHHH---HHHHH---HHHhcCCEEEEEEEcC---CCCCceEEEEEeeccc
Confidence 4688888766543 33332 233333 56788862 2355666665555654
No 37
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=42.20 E-value=21 Score=23.20 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=28.9
Q ss_pred CcCCCCHHHHH---HHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCcc------CEEEEEEeeccC
Q 033149 22 RFGDLTADETR---DLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTV------PHVHIHIVPRKA 80 (126)
Q Consensus 22 ~~~~l~~~e~~---~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~~gq~v------~H~HiHiiPr~~ 80 (126)
++.+++++.+. .+-.++..+++. .|..-+++.++.....|-+. .|+=+|-.|-+.
T Consensus 12 dlygc~~~~L~d~~~l~~~l~~aa~~----~gatvl~~~~h~F~P~GvSgvvllaESHisIHTwPE~g 75 (135)
T 2iii_A 12 DLYGVDADKIDRVEDIRELLEGAVKY----ANLTKISSHYYQFQPHGATGVVLLAESHISIHTWPEHG 75 (135)
T ss_dssp EEESCCGGGSSSHHHHHHHHHHHHHH----TTCCEEEEEEEECSSSCEEEEEEEC-CEEEEEEEGGGT
T ss_pred EEeCCChHHCCCHHHHHHHHHHHHHH----cCCEEEEEEEEEcCCCCeEEEEEecccEEEEEeCCCCC
Confidence 46666665333 333333333333 34555555544432233222 899999999653
No 38
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=41.74 E-value=17 Score=18.30 Aligned_cols=20 Identities=45% Similarity=0.496 Sum_probs=16.6
Q ss_pred cCCCHHHHHHHHHHHHHhhh
Q 033149 105 KNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 105 ~~~~~~el~~l~~~lr~~l~ 124 (126)
...+.|+|++....||..++
T Consensus 10 ~dA~pEela~Y~~~Lr~YiN 29 (36)
T 1bba_A 10 DNATPEQMAQYAAELRRYIN 29 (36)
T ss_dssp SCSSTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 45678999999999998775
No 39
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=39.83 E-value=31 Score=17.82 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=17.7
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 033149 104 MKNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 104 ~~~~~~~el~~l~~~lr~~l~ 124 (126)
....++|+|++....|+..++
T Consensus 13 g~~aspEela~Y~~~Lr~Yin 33 (41)
T 2l60_A 13 LKKLSPEELNRYYASLRHYLN 33 (41)
T ss_dssp HTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 456789999999999998774
No 40
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=35.53 E-value=17 Score=23.58 Aligned_cols=26 Identities=8% Similarity=-0.029 Sum_probs=20.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~~ 48 (126)
+..++++|...|..++.++.+.+...
T Consensus 128 ~~~l~~ee~~~l~~~L~~l~~~l~~~ 153 (168)
T 2nyx_A 128 VEQMAPAERHGLVRALTAFTEAGGEP 153 (168)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45688889988888888888777653
No 41
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=33.71 E-value=47 Score=25.09 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=26.3
Q ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 17 k~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
.||.-++.||+.+|+..|...+..+.+....
T Consensus 31 grhlLsi~dls~eei~~ll~~A~~lK~~~~~ 61 (358)
T 4h31_A 31 NRNFLKLLDFSTKEIQFLIDLSADLKKAKYA 61 (358)
T ss_dssp TCCBCCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCchhhCCHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999887665543
No 42
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=32.66 E-value=53 Score=24.27 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=24.8
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 033149 18 RDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (126)
Q Consensus 18 ~H~~~~~~l~~~e~~~l~~~~~~v~~~l~ 46 (126)
||.-++.||+.+|+..|...+..+.+..+
T Consensus 2 rhll~~~dls~~ei~~ll~~A~~lk~~~~ 30 (306)
T 4ekn_B 2 KHLISMKDIGKEEILEILDEARKMEELLN 30 (306)
T ss_dssp CCBCCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCchhhCCHHHHHHHHHHHHHHHhHhh
Confidence 78889999999999999998888776543
No 43
>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} SCOP: d.89.1.5 PDB: 1osb_A* 1qx0_A* 1s6m_A* 1zm5_A* 2cdm_A
Probab=32.53 E-value=89 Score=22.90 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=13.9
Q ss_pred cCEEEEEEe-eccCCCCCCCCccchhhh
Q 033149 68 VPHVHIHIV-PRKAASSEENDGNKDVKE 94 (126)
Q Consensus 68 v~H~HiHii-Pr~~~~~~~~~~~~~~~~ 94 (126)
-||+|.|++ +-...+ .|+.|+.+.
T Consensus 157 DP~lHtH~vv~N~~~~---~dG~wral~ 181 (293)
T 1omh_A 157 DPQLHTHAVILNMTKR---SDGQWRALK 181 (293)
T ss_dssp CEEEEEEEEEESCEEC---TTSCEECCB
T ss_pred CCCceeEEEEeeEEEC---CCCcEEecc
Confidence 499999954 532222 145666554
No 44
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=32.52 E-value=44 Score=24.71 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=25.4
Q ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHH
Q 033149 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (126)
Q Consensus 16 Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~ 44 (126)
+.||.-++.||+.+|+..|...+..+.+.
T Consensus 4 ~~rh~l~~~dls~~ei~~ll~~A~~lk~~ 32 (308)
T 1ml4_A 4 KGRDVISIRDFSKEDIETVLATAERLERE 32 (308)
T ss_dssp TTCCBCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcchhhCCHHHHHHHHHHHHHHHhh
Confidence 35899999999999999999999888764
No 45
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=30.90 E-value=48 Score=24.78 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=25.2
Q ss_pred ecccccCCcCCCCHHHHHHHHHHHHHHHHH
Q 033149 15 DPRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (126)
Q Consensus 15 iPk~H~~~~~~l~~~e~~~l~~~~~~v~~~ 44 (126)
...||.-++.||+.+|+..|...+..+.+.
T Consensus 11 ~~~rhllsi~dls~~ei~~ll~~A~~lk~~ 40 (323)
T 3gd5_A 11 RFRPDLLSLDDLDEAQLHALLTLAHQLKRG 40 (323)
T ss_dssp CCCSCBSSGGGSCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCccchHhCCHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999888877653
No 46
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=30.80 E-value=57 Score=24.06 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=25.6
Q ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHH
Q 033149 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQ 44 (126)
Q Consensus 16 Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~ 44 (126)
..||+-++.|++.+|+..|...+..+.+.
T Consensus 8 ~~rhlls~~dls~~ei~~ll~~A~~lk~~ 36 (301)
T 2ef0_A 8 LPKDLLDFSGYGPKELQALLDLAEQLKRE 36 (301)
T ss_dssp CCSCBSSSTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcchhhCCHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999888764
No 47
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=30.50 E-value=68 Score=24.05 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=26.1
Q ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 033149 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (126)
Q Consensus 16 Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l 45 (126)
..||.-++.|++.+|+..|...+..+.+..
T Consensus 5 ~~rh~Ls~~dls~~ei~~ll~~A~~lk~~~ 34 (335)
T 1dxh_A 5 HNRNLLSLMHHSTRELRYLLDLSRDLKRAK 34 (335)
T ss_dssp TTCCBSSSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHhCCHHHHHHHHHHHHHHHhhh
Confidence 358999999999999999999999887654
No 48
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=30.46 E-value=57 Score=24.16 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=26.2
Q ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 17 k~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
.||.-++.|++.+|+..|...+..+.+..+.
T Consensus 6 ~rhlls~~dls~~ei~~ll~~A~~lk~~~~~ 36 (309)
T 4f2g_A 6 IRHYLQFKDFSLEDYEYVLERTGILKRKFKN 36 (309)
T ss_dssp CCCBSSGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCchhhCCHHHHHHHHHHHHHHHhhhhc
Confidence 4899999999999999999998887765543
No 49
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=30.41 E-value=64 Score=20.49 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~~ 48 (126)
+..++++|...|..++.++.+.+.+.
T Consensus 115 ~~~l~~ee~~~l~~~L~kl~~nl~~l 140 (151)
T 4aik_A 115 LGGISSDEIAVLSGLIDKLEKNIIQL 140 (151)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999998888763
No 50
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=30.17 E-value=61 Score=24.06 Aligned_cols=29 Identities=28% Similarity=0.240 Sum_probs=25.7
Q ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 033149 17 RRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (126)
Q Consensus 17 k~H~~~~~~l~~~e~~~l~~~~~~v~~~l 45 (126)
.||.-++.|++.+|+..|...+..+.+..
T Consensus 7 ~rhlls~~dls~~ei~~ll~~A~~lk~~~ 35 (315)
T 1pvv_A 7 GRDLLCLQDYTAEEIWTILETAKMFKIWQ 35 (315)
T ss_dssp TCCBSCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhCCHHHHHHHHHHHHHHHhhh
Confidence 48999999999999999999999887654
No 51
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=29.82 E-value=68 Score=19.56 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=17.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHH
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLE 46 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~ 46 (126)
+..++++|...+..++.++...+.
T Consensus 121 ~~~l~~~e~~~l~~~l~~l~~~l~ 144 (146)
T 2fbh_A 121 LTGIDESEQALCQQVLLRILANLE 144 (146)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888877776664
No 52
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=29.78 E-value=55 Score=21.06 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=21.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~~ 48 (126)
+..++++|...|..++.++...+.+.
T Consensus 137 ~~~l~~~e~~~l~~~L~~l~~~l~~~ 162 (166)
T 3deu_A 137 LAGISSEEIELLIKLIAKLEHNIMEL 162 (166)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998888764
No 53
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=29.76 E-value=66 Score=16.90 Aligned_cols=22 Identities=18% Similarity=0.071 Sum_probs=17.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHHH
Q 033149 21 VRFGDLTADETRDLWLTAQTVG 42 (126)
Q Consensus 21 ~~~~~l~~~e~~~l~~~~~~v~ 42 (126)
.+++.|+++|..++......-.
T Consensus 3 ~s~tGLT~~EA~EfH~~~~~~~ 24 (45)
T 1lgh_B 3 RSLSGLTEEEAIAVHDQFKTTF 24 (45)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHHHH
Confidence 4688999999999888765543
No 54
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=29.37 E-value=50 Score=15.40 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 033149 107 RTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 107 ~~~~el~~l~~~lr~~l~ 124 (126)
.-++|..++-..||.+|.
T Consensus 10 pcdqeikelennirkals 27 (31)
T 2wh0_Q 10 PCDQEIKELENNIRKALS 27 (31)
T ss_pred chHHHHHHHHHHHHHHhc
Confidence 457899999999998874
No 55
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=29.25 E-value=49 Score=24.47 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=23.6
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHH
Q 033149 18 RDAVRFGDLTADETRDLWLTAQTVGTQ 44 (126)
Q Consensus 18 ~H~~~~~~l~~~e~~~l~~~~~~v~~~ 44 (126)
||.-++.||+.+|+..|...+..+.+.
T Consensus 3 rhll~~~dls~~ei~~ll~~A~~lk~~ 29 (307)
T 3tpf_A 3 KHFLTLRDFSKEEILSLVNHASELKKE 29 (307)
T ss_dssp CCBSCGGGSCHHHHHHHHHHHHHHHHS
T ss_pred CcCCchhhCCHHHHHHHHHHHHHHHhc
Confidence 788999999999999999988877653
No 56
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=29.22 E-value=76 Score=19.71 Aligned_cols=27 Identities=7% Similarity=0.038 Sum_probs=23.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLESYH 49 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~~~ 49 (126)
+..+++++...+..++.++...+.+..
T Consensus 121 ~~~l~~~e~~~l~~~l~~l~~~l~~~~ 147 (149)
T 4hbl_A 121 PQEFDTTEYDETKYVFEELEQTLKHLI 147 (149)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999998887653
No 57
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=29.06 E-value=73 Score=19.60 Aligned_cols=25 Identities=8% Similarity=0.359 Sum_probs=19.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
+..++++|...+..++.++...+++
T Consensus 123 ~~~l~~~e~~~l~~~l~~l~~~l~~ 147 (148)
T 3nrv_A 123 LEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 4568888888888888888877754
No 58
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=28.52 E-value=75 Score=19.38 Aligned_cols=26 Identities=12% Similarity=0.000 Sum_probs=20.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~~ 48 (126)
+..+++++...+..++.++...+...
T Consensus 112 ~~~l~~~e~~~l~~~l~~l~~~l~~~ 137 (144)
T 1lj9_A 112 LQGLSEVEISQLADYLVRMRKNVSED 137 (144)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHhHHHH
Confidence 45788888888888888888777654
No 59
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=28.42 E-value=66 Score=23.95 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=26.1
Q ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 033149 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (126)
Q Consensus 16 Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l 45 (126)
..||+-++.||+.+|+..|...+..+.+..
T Consensus 5 ~~rhlls~~dls~~ei~~ll~~A~~lk~~~ 34 (321)
T 1oth_A 5 KGRDLLTLKNFTGEEIKYMLWLSADLKFRI 34 (321)
T ss_dssp TTCCBSCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchhhCCHHHHHHHHHHHHHHHhhh
Confidence 358999999999999999999999887654
No 60
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=28.13 E-value=66 Score=24.15 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=26.2
Q ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 17 k~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
.||.-++.||+.+|+..|...+..+.+..+.
T Consensus 24 ~rhlls~~dls~~ei~~ll~~A~~lk~~~~~ 54 (339)
T 4a8t_A 24 KRDYVTTETYTKEEMHYLVDLSLKIKEAIKN 54 (339)
T ss_dssp CCCBSCGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccchHhCCHHHHHHHHHHHHHHHhhhhc
Confidence 4899999999999999999998887765543
No 61
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=28.08 E-value=79 Score=23.95 Aligned_cols=18 Identities=17% Similarity=0.027 Sum_probs=11.4
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 033149 105 KNRTMEEMAQEADEYRSL 122 (126)
Q Consensus 105 ~~~~~~el~~l~~~lr~~ 122 (126)
+.++..+++++.++.+..
T Consensus 346 ~~l~~~~~~~f~~~~~~~ 363 (371)
T 3slu_A 346 PELTQADKAAFAAQKQKA 363 (371)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 457788887765554443
No 62
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=27.66 E-value=30 Score=17.49 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=16.1
Q ss_pred cCCCHHHHHHHHHHHHHhhh
Q 033149 105 KNRTMEEMAQEADEYRSLLS 124 (126)
Q Consensus 105 ~~~~~~el~~l~~~lr~~l~ 124 (126)
...+.|+|++....||..++
T Consensus 10 ~~a~pEela~Y~~~Lr~Yin 29 (37)
T 1f8p_A 10 EDAPAEDLARYYSALRHYIN 29 (37)
T ss_dssp SSCTTTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 34678899999999998764
No 63
>3ueb_A Putative uncharacterized protein; alpha and beta protein (A+B), unknown function; 1.98A {Thermococcus onnurineus}
Probab=27.60 E-value=57 Score=20.03 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=17.4
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 033149 23 FGDLTADETRDLWLTAQTVG 42 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~ 42 (126)
+-+|+++++.+++.+++.+.
T Consensus 15 LPeLsEe~lieiGelaQ~~i 34 (110)
T 3ueb_A 15 LPELSEEQLIEIGELAQETI 34 (110)
T ss_dssp CTTSCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHH
Confidence 77899999999999888754
No 64
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=27.55 E-value=81 Score=19.03 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=19.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
+..+++++...+..++.++...+.+
T Consensus 112 ~~~l~~~e~~~l~~~l~~~~~~l~~ 136 (138)
T 3bpv_A 112 FRDFTEDERKLFRKMCRRLAEEAVR 136 (138)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4568888888888888888877654
No 65
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=27.46 E-value=72 Score=23.80 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=26.7
Q ss_pred ecccccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 033149 15 DPRRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (126)
Q Consensus 15 iPk~H~~~~~~l~~~e~~~l~~~~~~v~~~l 45 (126)
...||.-++.||+.+|+..|...+..+.+..
T Consensus 17 ~~~rh~ls~~dls~~ei~~ll~~A~~lk~~~ 47 (325)
T 1vlv_A 17 LKGRSLLTLLDFSPEEIRYLLDISKQVKMEN 47 (325)
T ss_dssp CTTCCBSCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccchhhCCHHHHHHHHHHHHHHHhhh
Confidence 4568999999999999999999999887654
No 66
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=27.14 E-value=73 Score=24.13 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=25.6
Q ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 033149 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (126)
Q Consensus 17 k~H~~~~~~l~~~e~~~l~~~~~~v~~~l~ 46 (126)
.||.-++.||+.+|+..|...+..+.+..+
T Consensus 2 ~rhlLsi~dls~eei~~ll~~A~~lk~~~~ 31 (355)
T 4a8p_A 2 KRDYVTTETYTKEEMHYLVDLSLKIKEAIK 31 (355)
T ss_dssp CCCBSCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCchhhCCHHHHHHHHHHHHHHHhhhh
Confidence 378999999999999999998888776554
No 67
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=27.10 E-value=57 Score=24.12 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.1
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHH
Q 033149 18 RDAVRFGDLTADETRDLWLTAQTVGTQ 44 (126)
Q Consensus 18 ~H~~~~~~l~~~e~~~l~~~~~~v~~~ 44 (126)
||.-++.||+.+|+..|...+..+.+.
T Consensus 3 rhlls~~dls~~ei~~ll~~A~~lk~~ 29 (307)
T 2i6u_A 3 RHFLRDDDLSPAEQAEVLELAAELKKD 29 (307)
T ss_dssp CCBSSGGGSCHHHHHHHHHHHHHHHHS
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhh
Confidence 799999999999999999998888654
No 68
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=27.00 E-value=72 Score=23.89 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=26.1
Q ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 033149 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (126)
Q Consensus 16 Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l 45 (126)
..||+-++.|++.+|+..|...+..+.+..
T Consensus 4 ~~rh~Ls~~dls~~ei~~ll~~A~~lk~~~ 33 (333)
T 1duv_G 4 YHKHFLKLLDFTPAELNSLLQLAAKLKADK 33 (333)
T ss_dssp TTCCBSCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchhhCCHHHHHHHHHHHHHHHhhh
Confidence 358999999999999999999999887654
No 69
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=26.54 E-value=73 Score=24.22 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=26.7
Q ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 16 Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
..||.-++.|++.+|+..|...+..+.+..+.
T Consensus 29 ~~rh~Lsl~Dls~~ei~~ll~~A~~lK~~~~~ 60 (365)
T 4amu_A 29 KGRSLDSLLNFTTEEVQHLIDLSIDLKKAKYQ 60 (365)
T ss_dssp TTCCBSCGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcCchhhCCHHHHHHHHHHHHHHHhhhhc
Confidence 45899999999999999999988887765443
No 70
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=26.24 E-value=60 Score=24.45 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=23.2
Q ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHH
Q 033149 17 RRDAVRFGDLTADETRDLWLTAQTVGT 43 (126)
Q Consensus 17 k~H~~~~~~l~~~e~~~l~~~~~~v~~ 43 (126)
-||.-++.||+.+|+..|...+..+.+
T Consensus 23 mkhlLsi~Dls~~ei~~ll~~A~~~k~ 49 (359)
T 3kzn_A 23 LKHFLNTQDWSRAELDALLTQAALFKR 49 (359)
T ss_dssp CCCBSCGGGSCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhCCHHHHHHHHHHHHHHHh
Confidence 489999999999999999988876643
No 71
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=26.21 E-value=75 Score=19.97 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=20.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
+..++++|...|..++.++.+.+.+
T Consensus 133 ~~~l~~~e~~~l~~~l~~l~~~l~~ 157 (159)
T 3s2w_A 133 FSSFDDRQRREITNSLEIMFENGLK 157 (159)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4578888988888888888887764
No 72
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=25.74 E-value=88 Score=19.36 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=21.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLESY 48 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~~ 48 (126)
+..++++|...+..++.++...+.+.
T Consensus 122 ~~~l~~~e~~~l~~~l~~l~~~l~~~ 147 (151)
T 3kp7_A 122 TSDFDSKEIEKVRQVLEIIDYRIQSY 147 (151)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999988888763
No 73
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=25.69 E-value=65 Score=23.87 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=24.1
Q ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHH
Q 033149 17 RRDAVRFGDLTADETRDLWLTAQTVGT 43 (126)
Q Consensus 17 k~H~~~~~~l~~~e~~~l~~~~~~v~~ 43 (126)
.||.-++.|++.+|+..|...+..+.+
T Consensus 6 ~rh~ls~~dls~~ei~~ll~~A~~lk~ 32 (310)
T 3csu_A 6 QKHIISINDLSRDDLNLVLATAAKLKA 32 (310)
T ss_dssp TCCBCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred CCCccchhhCCHHHHHHHHHHHHHHHh
Confidence 489999999999999999998888765
No 74
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=25.33 E-value=76 Score=24.41 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=25.7
Q ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 033149 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (126)
Q Consensus 17 k~H~~~~~~l~~~e~~~l~~~~~~v~~~l~ 46 (126)
.||.-++.||+.+|+..|...+..+.+...
T Consensus 24 ~rh~L~l~Dls~eei~~ll~~A~~lK~~~~ 53 (399)
T 3q98_A 24 EKDFLLTWEQTPDELKQVLDVAAALKALRA 53 (399)
T ss_dssp GSCCCCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCchhhCCHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999888766544
No 75
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=25.00 E-value=85 Score=23.79 Aligned_cols=30 Identities=17% Similarity=0.032 Sum_probs=26.2
Q ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 033149 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (126)
Q Consensus 16 Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l 45 (126)
..||+-++.|++.+|+..|...+..+.+..
T Consensus 27 ~~rh~Ls~~Dls~~ei~~Ll~~A~~lK~~~ 56 (359)
T 2w37_A 27 QGRSVLAEKDFSAAELEYLIDFGLHLKALK 56 (359)
T ss_dssp TTCCBCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccchhhCCHHHHHHHHHHHHHHHhhh
Confidence 358999999999999999999999887654
No 76
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=24.97 E-value=98 Score=18.82 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=18.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
+..+++++...+..++.++...+..
T Consensus 119 ~~~l~~~e~~~l~~~l~~~~~~l~~ 143 (146)
T 2gxg_A 119 TGDLSEDEVILVLDKISKILKRIEE 143 (146)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888877776654
No 77
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=24.95 E-value=67 Score=19.94 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=20.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
+..++++|...+..++.++...+.+
T Consensus 128 ~~~l~~~e~~~l~~~l~~l~~~l~~ 152 (154)
T 2qww_A 128 FENLTENEIEELIRLNKKVETLLKK 152 (154)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4578999999999999988887754
No 78
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=24.78 E-value=62 Score=20.38 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=20.9
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 22 RFGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 22 ~~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
.+..++++|...|..+++++...+..
T Consensus 118 ~l~~l~~ee~~~l~~~L~~l~~~~~d 143 (147)
T 4b8x_A 118 GLGAYDAEECGEIFAMLRPLRVAAGD 143 (147)
T ss_dssp GTTTSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccC
Confidence 36789999999999999888776543
No 79
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=24.57 E-value=61 Score=20.31 Aligned_cols=25 Identities=0% Similarity=0.086 Sum_probs=18.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
+..++++|...|..++.++.+.+.+
T Consensus 131 ~~~l~~~e~~~l~~~l~~l~~~l~~ 155 (160)
T 3boq_A 131 LRAVSDQDMVEASAALRGILESMQT 155 (160)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 4568888888888888888766654
No 80
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=24.55 E-value=57 Score=23.96 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=23.2
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHH
Q 033149 18 RDAVRFGDLTADETRDLWLTAQTVGT 43 (126)
Q Consensus 18 ~H~~~~~~l~~~e~~~l~~~~~~v~~ 43 (126)
||.-++.|++.+|+..|...+..+.+
T Consensus 2 rh~ls~~dls~~ei~~ll~~A~~lk~ 27 (291)
T 3d6n_B 2 RSLISSLDLTREEVEEILKYAKEFKE 27 (291)
T ss_dssp CCBCCGGGCCHHHHHHHHHHHHHHHT
T ss_pred CccCchhhCCHHHHHHHHHHHHHHHh
Confidence 78899999999999999998887765
No 81
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=24.37 E-value=68 Score=23.96 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=24.8
Q ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHHHH
Q 033149 17 RRDAVRFGDLTADETRDLWLTAQTVGTQL 45 (126)
Q Consensus 17 k~H~~~~~~l~~~e~~~l~~~~~~v~~~l 45 (126)
.||.-++.|++.+|+..|...+..+.+..
T Consensus 7 ~rhlls~~dls~~ei~~ll~~A~~lk~~~ 35 (328)
T 3grf_A 7 TRHLLTISALCPKELAYLIDRALDMKKNP 35 (328)
T ss_dssp SCCBSSGGGSCHHHHHHHHHHHHHHHHCG
T ss_pred CcccCchhhCCHHHHHHHHHHHHHHHhhh
Confidence 48999999999999999999888776543
No 82
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=24.37 E-value=60 Score=23.88 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=23.3
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHH
Q 033149 18 RDAVRFGDLTADETRDLWLTAQTVGT 43 (126)
Q Consensus 18 ~H~~~~~~l~~~e~~~l~~~~~~v~~ 43 (126)
||.-++.||+.+|+..|...+..+.+
T Consensus 2 rh~ls~~dls~~ei~~ll~~A~~lk~ 27 (299)
T 1pg5_A 2 KHIISAYNFSRDELEDIFALTDKYSK 27 (299)
T ss_dssp CCBCSGGGCCHHHHHHHHHHHHHHHS
T ss_pred CccCchhhCCHHHHHHHHHHHHHHHh
Confidence 78899999999999999998888765
No 83
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=24.12 E-value=79 Score=19.73 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=19.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
+..++++|...|..++.++...+.+
T Consensus 127 ~~~l~~ee~~~l~~~L~~l~~~l~~ 151 (154)
T 2eth_A 127 LEKFSEEDFKVVSEGFNRMVEALSR 151 (154)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888888777764
No 84
>2plg_A TLL0839 protein; hypothetical, uncharacterized, DUF1821, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 2.60A {Synechococcus elongatus} SCOP: d.198.1.2
Probab=23.93 E-value=1.5e+02 Score=19.83 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=24.2
Q ss_pred ceeEEEecccccCCcCCCCHHHHHHHHHHHHHHH----HHHHhhcCCC
Q 033149 9 FGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVG----TQLESYHKAS 52 (126)
Q Consensus 9 ~gh~lIiPk~H~~~~~~l~~~e~~~l~~~~~~v~----~~l~~~~~~~ 52 (126)
.+.++++-.++ +.+|+++|+......+..++ ..|.+.||+.
T Consensus 112 ~n~V~~v~~r~---ls~Ld~~E~~~aIt~V~~lAD~~Dd~L~~~fg~~ 156 (163)
T 2plg_A 112 EEQVQVVASRT---LGGITAGEISRLITIVATLADDYDDALRAEFKGE 156 (163)
T ss_dssp TTEEEEEEEEE---CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCEEEEEEEEE---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46677776666 66788888755444444444 4555556664
No 85
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=23.91 E-value=73 Score=24.16 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=23.8
Q ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHH
Q 033149 16 PRRDAVRFGDLTADETRDLWLTAQTVGT 43 (126)
Q Consensus 16 Pk~H~~~~~~l~~~e~~~l~~~~~~v~~ 43 (126)
..||+-++.|++.+|+..|...+..+.+
T Consensus 22 ~~rh~lsi~dls~~ei~~ll~~A~~lk~ 49 (359)
T 1zq6_A 22 SLKHFLNTQDWSRAELDALLTQAALFKR 49 (359)
T ss_dssp -CCCBSCGGGSCHHHHHHHHHHHHHHHH
T ss_pred cCCCcCchhhCCHHHHHHHHHHHHHHHh
Confidence 3589999999999999999988887754
No 86
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.76 E-value=68 Score=21.20 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=17.1
Q ss_pred cCCcCCCCHHHHHHHHHHHHHH
Q 033149 20 AVRFGDLTADETRDLWLTAQTV 41 (126)
Q Consensus 20 ~~~~~~l~~~e~~~l~~~~~~v 41 (126)
..+++.|+++|...+.+++++-
T Consensus 11 ~~dLs~LteeEr~~Il~VL~Rd 32 (153)
T 2zet_C 11 RLDLSTLTDEEAEHVWAVVQRD 32 (153)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHhH
Confidence 3579999999988887777653
No 87
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=23.53 E-value=90 Score=17.66 Aligned_cols=22 Identities=9% Similarity=0.136 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 033149 26 LTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 26 l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
|+.+++..|...+..|..++.+
T Consensus 44 L~~~qw~~l~~~~~~I~~ai~~ 65 (66)
T 1pcf_A 44 LNPEQWSQLKEQISDIDDAVRK 65 (66)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999888875
No 88
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=23.47 E-value=60 Score=24.00 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.7
Q ss_pred cccCCcCCCCHHHHHHHHHHHHHHHH
Q 033149 18 RDAVRFGDLTADETRDLWLTAQTVGT 43 (126)
Q Consensus 18 ~H~~~~~~l~~~e~~~l~~~~~~v~~ 43 (126)
||.-++.|++.+|+..|...+..+.+
T Consensus 2 rhlls~~dls~~ei~~ll~~A~~lk~ 27 (304)
T 3r7f_A 2 KHLTTMSELSTEEIKDLLQTAQELKS 27 (304)
T ss_dssp CCBCCGGGSCHHHHHHHHHHHHHHHT
T ss_pred CccCchhhCCHHHHHHHHHHHHHHHc
Confidence 78889999999999999988877654
No 89
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=23.19 E-value=1e+02 Score=20.04 Aligned_cols=30 Identities=13% Similarity=0.005 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEEecC
Q 033149 32 RDLWLTAQTVGTQLESYHKASSLAFAIQDG 61 (126)
Q Consensus 32 ~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g 61 (126)
.++-.+++.+.+.+.+.++++++.+...+.
T Consensus 10 ldl~~il~~~v~~v~~~l~~DRv~Iy~f~~ 39 (171)
T 4glq_A 10 RDRQAIFETLVAKGRELLACDRVIVYAFDD 39 (171)
T ss_dssp THHHHHHHHHHHHHHHHHTCSEEEEEEECT
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEEEeC
Confidence 467778888999999999999988875543
No 90
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=22.98 E-value=54 Score=20.09 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhc
Q 033149 24 GDLTADETRDLWLTAQTVGTQLESYH 49 (126)
Q Consensus 24 ~~l~~~e~~~l~~~~~~v~~~l~~~~ 49 (126)
..+++++...+..++.++...+.+.+
T Consensus 117 ~~l~~~e~~~l~~~l~~l~~~l~~~~ 142 (145)
T 2a61_A 117 SDLGKEKSSKILDYLKELKGVMERNF 142 (145)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677777777777777777776654
No 91
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=22.73 E-value=76 Score=23.87 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=24.3
Q ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHH
Q 033149 16 PRRDAVRFGDLTADETRDLWLTAQTVGT 43 (126)
Q Consensus 16 Pk~H~~~~~~l~~~e~~~l~~~~~~v~~ 43 (126)
..||.-++.|++.+|+..|...+..+.+
T Consensus 34 ~~rhlLsi~dls~~ei~~ll~~A~~lk~ 61 (340)
T 4ep1_A 34 NTKDLLTLEELTQEEIISLIEFAIYLKK 61 (340)
T ss_dssp SCSCBSSGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCccchhhCCHHHHHHHHHHHHHHHh
Confidence 4589999999999999999988887755
No 92
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.47 E-value=67 Score=14.49 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 033149 111 EMAQEADEYR 120 (126)
Q Consensus 111 el~~l~~~lr 120 (126)
|++.+.+++|
T Consensus 9 eledlqerlr 18 (27)
T 3twe_A 9 ELEDLQERLR 18 (27)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 93
>2it9_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; HET: MSE PGE; 1.80A {Prochlorococcus marinus} SCOP: d.18.1.3
Probab=21.97 E-value=79 Score=20.40 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhh----cCCCceEEEEecCCC----CCCccCEEEEEEee
Q 033149 24 GDLTADETRDLWLTAQTVGTQLESY----HKASSLAFAIQDGPQ----AGQTVPHVHIHIVP 77 (126)
Q Consensus 24 ~~l~~~e~~~l~~~~~~v~~~l~~~----~~~~~~ni~~~~g~~----~gq~v~H~HiHiiP 77 (126)
.+|++.|+.+|..++.++...+... .+.+.+.+-...++. .|. -..+.+++|=
T Consensus 32 iELTe~E~~~f~~Ll~qL~~~~~~i~~eLM~EE~I~lE~E~~~~W~eleG~-~~~~sLr~IL 92 (127)
T 2it9_A 32 IELDKSEWKILVEVVMELCDQYKLVKEQLMGDEDITLELERRPWLAILNGD-QYGWNLRLIL 92 (127)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHTTTCCTTCEEEEEEEETTEEEEEEEE-TTEEEEEEEE
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHhcchhheeeeecCccEEEEeecc-cCeeEEEEEE
Confidence 4799999999999999888777664 345667765554432 221 1355666653
No 94
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=21.41 E-value=1.2e+02 Score=17.94 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=23.2
Q ss_pred cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEe
Q 033149 20 AVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQ 59 (126)
Q Consensus 20 ~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~ 59 (126)
..++..-+..|...++.++-++...+ |.+.+|+-|.
T Consensus 49 risitartkkeaekfaailikvfael----gyndinvtfd 84 (106)
T 1qys_A 49 RISITARTKKEAEKFAAILIKVFAEL----GYNDINVTFD 84 (106)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEEEE
T ss_pred EEEEEecchhHHHHHHHHHHHHHHHh----CCcceeEEEc
Confidence 33455556677777777666665544 6777888664
No 95
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=21.34 E-value=90 Score=18.04 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=18.5
Q ss_pred ccCCCHHHHHHHHHHHHHhhhc
Q 033149 104 MKNRTMEEMAQEADEYRSLLSK 125 (126)
Q Consensus 104 ~~~~~~~el~~l~~~lr~~l~~ 125 (126)
.|..++++.+++.+++++.+.+
T Consensus 53 ~P~l~ee~~~~~vek~~~~i~~ 74 (77)
T 3zzp_A 53 NPNLDQSQLQNEKEIIQRALEN 74 (77)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 4668899999999999988753
No 96
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=21.10 E-value=40 Score=18.56 Aligned_cols=18 Identities=39% Similarity=0.698 Sum_probs=12.2
Q ss_pred CCccCEE-EEEEeeccCCC
Q 033149 65 GQTVPHV-HIHIVPRKAAS 82 (126)
Q Consensus 65 gq~v~H~-HiHiiPr~~~~ 82 (126)
|-.|+|- |+|.||+....
T Consensus 24 gyvv~HGdH~HyIpk~~Ls 42 (55)
T 2cs7_A 24 AYIVPHGDHYHYIPKNELS 42 (55)
T ss_dssp EEEEEETTEEEEEEGGGSC
T ss_pred eEEEecCCeEEEeEhHHCC
Confidence 4556775 88999986433
No 97
>2lwx_A Zuotin; J-protein, molecular chaperone, pleiotropic drug resistance, chaperone; NMR {Saccharomyces cerevisiae}
Probab=20.92 E-value=71 Score=20.01 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.8
Q ss_pred cCCCHHHHHHHHHHHHH
Q 033149 105 KNRTMEEMAQEADEYRS 121 (126)
Q Consensus 105 ~~~~~~el~~l~~~lr~ 121 (126)
...+++||.+++.+|+.
T Consensus 61 ~klddeeLa~lA~Kl~a 77 (108)
T 2lwx_A 61 DSLNDEELVSTADKIKA 77 (108)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHhcc
Confidence 46899999999999974
No 98
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=20.78 E-value=66 Score=19.58 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 033149 24 GDLTADETRDLWLTAQTVGTQL 45 (126)
Q Consensus 24 ~~l~~~e~~~l~~~~~~v~~~l 45 (126)
..++++|...+..++.++...+
T Consensus 117 ~~l~~~e~~~l~~~l~~l~~~l 138 (139)
T 3eco_A 117 SQLSEEENEQMKANLTKMLSSL 138 (139)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHHhc
Confidence 4567777777777666665543
No 99
>2nvn_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 2.50A {Synechococcus elongatus} SCOP: d.18.1.3
Probab=20.74 E-value=82 Score=20.20 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhh----cCCCceEEEEecCCC----CCCccCEEEEEEee
Q 033149 24 GDLTADETRDLWLTAQTVGTQLESY----HKASSLAFAIQDGPQ----AGQTVPHVHIHIVP 77 (126)
Q Consensus 24 ~~l~~~e~~~l~~~~~~v~~~l~~~----~~~~~~ni~~~~g~~----~gq~v~H~HiHiiP 77 (126)
.+|++.|+.+|..++.++...+... .+.+.+.+-...++. .|. -..+.+++|=
T Consensus 34 iELTe~E~~~f~~Ll~qL~~~~~~i~~eLM~EE~I~lE~E~~~~W~eleG~-~~~~sLr~IL 94 (122)
T 2nvn_A 34 VELTAAEMADFCRLVQQLAETIAAIAPELMPEERLQIEAESALLWLEAEGF-ADAYELRLIL 94 (122)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHTSCCCSSCSSCEEEEEECSSEEEEEEEE-TTEEEEEEEE
T ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhheeeeecCccEEEEeecc-cCeeEEEEEE
Confidence 4799999999999999999888775 345567665544432 221 1355666553
No 100
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=20.72 E-value=1.1e+02 Score=23.67 Aligned_cols=30 Identities=23% Similarity=0.147 Sum_probs=25.9
Q ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 033149 17 RRDAVRFGDLTADETRDLWLTAQTVGTQLE 46 (126)
Q Consensus 17 k~H~~~~~~l~~~e~~~l~~~~~~v~~~l~ 46 (126)
.||.-++.||+.+|+..|...+..+.+...
T Consensus 21 ~rh~Lsi~Dls~eei~~Ll~~A~~lK~~~~ 50 (418)
T 2yfk_A 21 ENDFFLTWEKTRDELEAVFTVADTLRYLRE 50 (418)
T ss_dssp TCCBCCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchhhCCHHHHHHHHHHHHHHHhhhh
Confidence 489999999999999999999988876543
No 101
>1pu1_A Hypothetical protein MTH677; structural genomics, alpha and beta protein (A+B), unknown function; NMR {Methanothermobacterthermautotrophicus} SCOP: d.266.1.1
Probab=20.62 E-value=1.5e+02 Score=18.05 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=18.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 033149 23 FGDLTADETRDLWLTAQTVGT 43 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~ 43 (126)
+-.|+++++.+++..++.+..
T Consensus 6 L~kLSe~eL~eIse~~~~~i~ 26 (94)
T 1pu1_A 6 LRKLTEGDLDEISSFLHNTIS 26 (94)
T ss_dssp CCCCSHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHH
Confidence 788999999999999888654
No 102
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=20.49 E-value=87 Score=19.22 Aligned_cols=24 Identities=4% Similarity=0.084 Sum_probs=16.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHH
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLE 46 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~ 46 (126)
+..++++|...+..++.++...+.
T Consensus 125 ~~~l~~~e~~~l~~~l~~l~~~l~ 148 (150)
T 2rdp_A 125 LESFSDEEIVVFERCLRKLHQEMT 148 (150)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHh
Confidence 345777777777777777766553
No 103
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=20.22 E-value=1.1e+02 Score=18.35 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=20.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 033149 23 FGDLTADETRDLWLTAQTVGTQLES 47 (126)
Q Consensus 23 ~~~l~~~e~~~l~~~~~~v~~~l~~ 47 (126)
+..+++++...+..++.++...+++
T Consensus 115 ~~~l~~~e~~~l~~~l~~~~~~l~~ 139 (142)
T 3bdd_A 115 NQILTVEESEQFLATLDKLLIGLQN 139 (142)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3468888999999988888877764
Done!