Your job contains 1 sequence.
>033150
MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR
IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLVIIPYF
FVRGTF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033150
(126 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2145618 - symbol:EMB3137 "EMBRYO DEFECTIVE 313... 417 4.8e-39 1
UNIPROTKB|Q0DPA4 - symbol:Os03g0704000 "Os03g0704000 prot... 322 5.6e-29 1
UNIPROTKB|A8JDP6 - symbol:PRPS13 "Plastid ribosomal prote... 190 5.4e-15 1
TAIR|locus:2203216 - symbol:AT1G77750 species:3702 "Arabi... 167 1.5e-12 1
UNIPROTKB|P20282 - symbol:rpsM "30S ribosomal protein S13... 162 5.0e-12 1
TIGR_CMR|CHY_2284 - symbol:CHY_2284 "ribosomal protein S1... 153 4.5e-11 1
TIGR_CMR|BA_0135 - symbol:BA_0135 "ribosomal protein S13"... 152 5.8e-11 1
TIGR_CMR|CJE_1764 - symbol:CJE_1764 "ribosomal protein S1... 152 5.8e-11 1
UNIPROTKB|O06327 - symbol:rpsM "30S ribosomal protein S13... 151 7.4e-11 1
UNIPROTKB|Q749B0 - symbol:rpsM "30S ribosomal protein S13... 149 1.2e-10 1
TIGR_CMR|GSU_2834 - symbol:GSU_2834 "ribosomal protein S1... 149 1.2e-10 1
TIGR_CMR|SO_0253 - symbol:SO_0253 "ribosomal protein S13"... 149 1.2e-10 1
UNIPROTKB|A9WH90 - symbol:rpsM "30S ribosomal protein S13... 148 1.5e-10 1
UNIPROTKB|Q89JA6 - symbol:rpsM "30S ribosomal protein S13... 147 2.0e-10 1
UNIPROTKB|Q9KP05 - symbol:rpsM "30S ribosomal protein S13... 147 2.0e-10 1
TIGR_CMR|VC_2574 - symbol:VC_2574 "ribosomal protein S13"... 147 2.0e-10 1
UNIPROTKB|A6UZL0 - symbol:rpsM "30S ribosomal protein S13... 146 2.5e-10 1
UNIPROTKB|O86773 - symbol:rpsM "30S ribosomal protein S13... 146 2.5e-10 1
UNIPROTKB|Q9RSJ9 - symbol:rpsM "30S ribosomal protein S13... 146 2.5e-10 1
UNIPROTKB|Q7NFF2 - symbol:rpsM "30S ribosomal protein S13... 143 5.2e-10 1
TIGR_CMR|CBU_0260 - symbol:CBU_0260 "ribosomal protein S1... 143 5.2e-10 1
UNIPROTKB|P0A7S9 - symbol:rpsM species:83333 "Escherichia... 141 8.4e-10 1
UNIPROTKB|O66486 - symbol:rpsM "30S ribosomal protein S13... 140 1.1e-09 1
TIGR_CMR|DET_0499 - symbol:DET_0499 "ribosomal protein S1... 139 1.4e-09 1
TIGR_CMR|ECH_0430 - symbol:ECH_0430 "ribosomal protein S1... 133 5.9e-09 1
UNIPROTKB|Q9X1I5 - symbol:rpsM "30S ribosomal protein S13... 127 2.6e-08 1
TIGR_CMR|SPO_0509 - symbol:SPO_0509 "ribosomal protein S1... 124 5.3e-08 1
UNIPROTKB|Q8A499 - symbol:rpsM "30S ribosomal protein S13... 123 6.8e-08 1
TIGR_CMR|CPS_0623 - symbol:CPS_0623 "ribosomal protein S1... 112 1.0e-06 1
TIGR_CMR|APH_0301 - symbol:APH_0301 "ribosomal protein S1... 111 1.3e-06 1
UNIPROTKB|Q9XD12 - symbol:rpsM "30S ribosomal protein S13... 110 1.6e-06 1
UNIPROTKB|Q3KLI8 - symbol:rpsM "30S ribosomal protein S13... 108 2.6e-06 1
TIGR_CMR|NSE_0287 - symbol:NSE_0287 "ribosomal protein S1... 88 0.00035 1
POMBASE|SPCC1795.07 - symbol:SPCC1795.07 "mitochondrial r... 90 0.00074 1
>TAIR|locus:2145618 [details] [associations]
symbol:EMB3137 "EMBRYO DEFECTIVE 3137" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0015935 "small ribosomal
subunit" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IBA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PROSITE:PS00646 PROSITE:PS50159
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0006412
GO:GO:0009941 GO:GO:0042254 GO:GO:0005840 GO:GO:0003735
EMBL:AL163817 GO:GO:0019843 SUPFAM:SSF46946 EMBL:Z47986 EMBL:X91955
EMBL:X86734 EMBL:AY052738 EMBL:AY039533 EMBL:Z17611 IPI:IPI00535943
PIR:S59594 RefSeq:NP_568299.1 UniGene:At.19669
ProteinModelPortal:P42732 SMR:P42732 STRING:P42732 PaxDb:P42732
PRIDE:P42732 EnsemblPlants:AT5G14320.1 GeneID:831282
KEGG:ath:AT5G14320 GeneFarm:44 TAIR:At5g14320 eggNOG:COG0099
HOGENOM:HOG000039879 InParanoid:P42732 KO:K02952 OMA:REVAMNI
PhylomeDB:P42732 ProtClustDB:CLSN2689668 Genevestigator:P42732
GermOnline:AT5G14320 HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 Uniprot:P42732
Length = 169
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 83/114 (72%), Positives = 95/114 (83%)
Query: 1 MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR 60
M Q +AMPVA +LS+ICN +N L+ +L+ P S P LSI+CARVGGVEIP NKR
Sbjct: 1 MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60
Query: 61 IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDL 114
IEYSLQYIHG+GRTRARQILVDL+MENKITKDM+EEELI +RDEVSKYMIEGDL
Sbjct: 61 IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL 114
>UNIPROTKB|Q0DPA4 [details] [associations]
symbol:Os03g0704000 "Os03g0704000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003735 "structural constituent
of ribosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 Pfam:PF00416 PROSITE:PS50159
GO:GO:0005739 GO:GO:0006412 GO:GO:0042254 EMBL:AP008209
GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF46946 GO:GO:0015935
eggNOG:COG0099 KO:K02952 PANTHER:PTHR10871 RefSeq:NP_001051020.2
UniGene:Os.68758 STRING:Q0DPA4 GeneID:4333848 KEGG:osa:4333848
Gramene:Q0DPA4 Uniprot:Q0DPA4
Length = 203
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 60/90 (66%), Positives = 79/90 (87%)
Query: 27 NASLSFPVSKQPQ--YPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK 84
++S+SFPV K+ + GL I+C R+GGVEIPN+KR+EYSLQYIHG+GR+R+RQIL+DL
Sbjct: 24 SSSVSFPVPKKGGIGHGGLRIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLN 83
Query: 85 MENKITKDMSEEELITIRDEVSKYMIEGDL 114
+NK+TKD+SEEE+IT+R EV+KYMIEGDL
Sbjct: 84 FDNKVTKDLSEEEVITLRKEVTKYMIEGDL 113
>UNIPROTKB|A8JDP6 [details] [associations]
symbol:PRPS13 "Plastid ribosomal protein S13" species:3055
"Chlamydomonas reinhardtii" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005739 GO:GO:0006412 GO:GO:0009941
GO:GO:0042254 GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 KO:K02952 OMA:REVAMNI
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 EMBL:DS496163
RefSeq:XP_001700563.1 UniGene:Cre.14084 ProteinModelPortal:A8JDP6
SMR:A8JDP6 STRING:A8JDP6 PRIDE:A8JDP6 ProMEX:A8JDP6
EnsemblPlants:EDO98007 GeneID:5726085 KEGG:cre:CHLREDRAFT_195627
ProtClustDB:CLSN2923472 HAMAP:MF_01315_B Uniprot:A8JDP6
Length = 164
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 41/77 (53%), Positives = 51/77 (66%)
Query: 38 PQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEE 97
P+ L I RV VEIPN+KRIE SLQYI G+G T A+ IL D +ENK T +++EEE
Sbjct: 33 PRRAPLHIMNLRVNNVEIPNSKRIEVSLQYIFGIGETTAQTILRDTGVENKKTYELNEEE 92
Query: 98 LITIRDEVSKYMIEGDL 114
+ +R EV KY E DL
Sbjct: 93 INKLRSEVEKYTTEADL 109
>TAIR|locus:2203216 [details] [associations]
symbol:AT1G77750 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM;IDA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0005763 "mitochondrial small ribosomal subunit" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0006412 GO:GO:0042254 GO:GO:0003735
GO:GO:0019843 EMBL:AC012193 GO:GO:0005763 SUPFAM:SSF46946
eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952 HAMAP:MF_01315
PANTHER:PTHR10871 EMBL:BT010186 IPI:IPI00540022 PIR:D96807
RefSeq:NP_177898.1 UniGene:At.34407 ProteinModelPortal:Q9CA19
SMR:Q9CA19 STRING:Q9CA19 PaxDb:Q9CA19 PRIDE:Q9CA19
EnsemblPlants:AT1G77750.1 GeneID:844111 KEGG:ath:AT1G77750
TAIR:At1g77750 InParanoid:Q9CA19 OMA:RSATTLF
ProtClustDB:CLSN2679459 Genevestigator:Q9CA19 GermOnline:AT1G77750
Uniprot:Q9CA19
Length = 154
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 33/95 (34%), Positives = 58/95 (61%)
Query: 19 GHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQ 78
G + T +S + + + GL +Q RVG E+PNNK ++ LQ ++G+GR ++ Q
Sbjct: 3 GLRRSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQ 62
Query: 79 ILVDLKMENKITKDMSEEELITIRDEVSKYMIEGD 113
+L L + NK+ +D++ +ELI +R+EV ++ GD
Sbjct: 63 VLCHLGITNKLARDLTGKELIDLREEVGQHQ-HGD 96
>UNIPROTKB|P20282 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0003735
"structural constituent of ribosome" evidence=IBA] [GO:0005829
"cytosol" evidence=IBA] [GO:0006412 "translation" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IBA] [GO:0042254
"ribosome biogenesis" evidence=IBA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 GO:GO:0003735
EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 GO:GO:0015935 EMBL:L47971 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 EMBL:M26414 EMBL:M13957
PIR:C32307 RefSeq:NP_388022.2 ProteinModelPortal:P20282 SMR:P20282
EnsemblBacteria:EBBACT00000002700 GeneID:938928 KEGG:bsu:BSU01410
PATRIC:18971793 GenoList:BSU01410 BioCyc:BSUB:BSU01410-MONOMER
Uniprot:P20282
Length = 121
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP +KR+ SL YI G+GRT A+Q+L + + E+ +D++EEEL IRD +
Sbjct: 2 ARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIID 61
Query: 107 KYMIEGDL 114
K +EGDL
Sbjct: 62 KLKVEGDL 69
>TIGR_CMR|CHY_2284 [details] [associations]
symbol:CHY_2284 "ribosomal protein S13" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_361093.1
ProteinModelPortal:Q3A9U1 SMR:Q3A9U1 STRING:Q3A9U1 GeneID:3726461
KEGG:chy:CHY_2284 PATRIC:21277639 HOGENOM:HOG000039878
BioCyc:CHYD246194:GJCN-2283-MONOMER Uniprot:Q3A9U1
Length = 123
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 30/70 (42%), Positives = 49/70 (70%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV 105
AR+ GV++P +KR+E +L YI+G+GR A IL + + ++ KD++EEE+ +RDE+
Sbjct: 2 ARIAGVDLPRDKRVEIALTYIYGIGRPTANVILKKTGINPDTRV-KDLTEEEVAKLRDEI 60
Query: 106 SK-YMIEGDL 114
K Y +EG+L
Sbjct: 61 EKNYKVEGEL 70
>TIGR_CMR|BA_0135 [details] [associations]
symbol:BA_0135 "ribosomal protein S13" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
RefSeq:NP_842703.1 RefSeq:YP_016740.1 RefSeq:YP_026421.1
ProteinModelPortal:P62176 SMR:P62176 DNASU:1085954
EnsemblBacteria:EBBACT00000008086 EnsemblBacteria:EBBACT00000018614
EnsemblBacteria:EBBACT00000020746 GeneID:1085954 GeneID:2819393
GeneID:2850910 KEGG:ban:BA_0135 KEGG:bar:GBAA_0135 KEGG:bat:BAS0135
BioCyc:BANT260799:GJAJ-146-MONOMER
BioCyc:BANT261594:GJ7F-148-MONOMER Uniprot:P62176
Length = 121
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP +KR+ SL Y+ G+GRT A +IL + + E +D++E+EL IRD +
Sbjct: 2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIID 61
Query: 107 KYMIEGDL 114
+ +EGDL
Sbjct: 62 RIKVEGDL 69
>TIGR_CMR|CJE_1764 [details] [associations]
symbol:CJE_1764 "ribosomal protein S13/S18" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0006412
GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
RefSeq:YP_179736.1 ProteinModelPortal:Q5HSJ9 SMR:Q5HSJ9
STRING:Q5HSJ9 GeneID:3232391 KEGG:cjr:CJE1764 PATRIC:20045338
BioCyc:CJEJ195099:GJC0-1794-MONOMER Uniprot:Q5HSJ9
Length = 121
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 31/70 (44%), Positives = 48/70 (68%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV 105
AR+ GV++P KRIEY L YI+G+G +R+IL V + + ++ ++SE+E IR E+
Sbjct: 2 ARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKRV-HELSEDEAAAIRKEI 60
Query: 106 SK-YMIEGDL 114
+ YM+EGDL
Sbjct: 61 QENYMVEGDL 70
>UNIPROTKB|O06327 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005886
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842583 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
PIR:A70566 RefSeq:NP_217977.1 RefSeq:NP_338092.1
RefSeq:YP_006516949.1 ProteinModelPortal:O06327 SMR:O06327
PRIDE:O06327 EnsemblBacteria:EBMYCT00000002449
EnsemblBacteria:EBMYCT00000070559 GeneID:13317067 GeneID:887514
GeneID:926626 KEGG:mtc:MT3567 KEGG:mtu:Rv3460c KEGG:mtv:RVBD_3460c
PATRIC:18129571 TubercuList:Rv3460c Uniprot:O06327
Length = 124
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 30/69 (43%), Positives = 50/69 (72%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS 106
AR+ GV++P +KR+E +L YI G+GRTR+ +IL ++ + T+D++EE+LI +RD +
Sbjct: 2 ARLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYIE 61
Query: 107 KYM-IEGDL 114
+ +EGDL
Sbjct: 62 ANLKVEGDL 70
>UNIPROTKB|Q749B0 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:NP_953877.1 ProteinModelPortal:Q749B0
SMR:Q749B0 GeneID:2687149 KEGG:gsu:GSU2834 PATRIC:22028513
BioCyc:GSUL243231:GH27-2793-MONOMER Uniprot:Q749B0
Length = 122
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/69 (43%), Positives = 48/69 (69%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ G+++P NKRIE +L YI G+GRT A++IL + + + T +++E E+ IRD +
Sbjct: 2 ARIAGIDLPRNKRIEIALTYIFGIGRTTAQRILAETGVSADTRTDNLAESEVAKIRDYID 61
Query: 107 KYM-IEGDL 114
K + +EGDL
Sbjct: 62 KNLKVEGDL 70
>TIGR_CMR|GSU_2834 [details] [associations]
symbol:GSU_2834 "ribosomal protein S13" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:NP_953877.1
ProteinModelPortal:Q749B0 SMR:Q749B0 GeneID:2687149
KEGG:gsu:GSU2834 PATRIC:22028513
BioCyc:GSUL243231:GH27-2793-MONOMER Uniprot:Q749B0
Length = 122
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/69 (43%), Positives = 48/69 (69%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ G+++P NKRIE +L YI G+GRT A++IL + + + T +++E E+ IRD +
Sbjct: 2 ARIAGIDLPRNKRIEIALTYIFGIGRTTAQRILAETGVSADTRTDNLAESEVAKIRDYID 61
Query: 107 KYM-IEGDL 114
K + +EGDL
Sbjct: 62 KNLKVEGDL 70
>TIGR_CMR|SO_0253 [details] [associations]
symbol:SO_0253 "ribosomal protein S13" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:NP_715893.1 ProteinModelPortal:Q8EK48
SMR:Q8EK48 GeneID:1168136 KEGG:son:SO_0253 PATRIC:23520199
Uniprot:Q8EK48
Length = 118
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ G+ IP+ K +L I G+GRTRAR I + E K++SE ++ T+R+EV+
Sbjct: 2 ARIAGINIPDQKHTVIALTAIFGIGRTRARAICAATSIAETAKIKELSEAQIDTLREEVA 61
Query: 107 KYMIEGDL 114
KY++EGDL
Sbjct: 62 KYLVEGDL 69
>UNIPROTKB|A9WH90 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:324602
"Chloroflexus aurantiacus J-10-fl" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:CP000909 GenomeReviews:CP000909_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_001635991.1
ProteinModelPortal:A9WH90 SMR:A9WH90 STRING:A9WH90 PRIDE:A9WH90
GeneID:5826857 KEGG:cau:Caur_2393 PATRIC:21415911
BioCyc:CAUR324602:GIXU-2432-MONOMER Uniprot:A9WH90
Length = 127
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 30/70 (42%), Positives = 50/70 (71%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV 105
AR+ GV+IP NK+IE ++ YI+G+GR+ +IL ++ E ++ +D++EEE+ IR+ V
Sbjct: 2 ARIAGVDIPRNKKIEIAITYIYGIGRSNGMEILRKANVNPERRV-RDLTEEEVGRIREIV 60
Query: 106 SK-YMIEGDL 114
+ Y +EGDL
Sbjct: 61 DREYRVEGDL 70
>UNIPROTKB|Q89JA6 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 SUPFAM:SSF46946 GO:GO:0015935 EMBL:BA000040
GenomeReviews:BA000040_GR eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:NP_772018.1
ProteinModelPortal:Q89JA6 SMR:Q89JA6 GeneID:1051268
KEGG:bja:bll5378 PATRIC:21194446
BioCyc:BJAP224911:GJEJ-5418-MONOMER Uniprot:Q89JA6
Length = 122
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 29/69 (42%), Positives = 48/69 (69%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV IP NKR+ +LQYIHG+G+ A +IL +K+ ++ +S+ E++ IR+ +
Sbjct: 2 ARIAGVNIPTNKRVLIALQYIHGIGQKIAGEILEKVKIPVDRRVSQLSDAEVLQIREVID 61
Query: 107 K-YMIEGDL 114
+ Y++EGDL
Sbjct: 62 RDYLVEGDL 70
>UNIPROTKB|Q9KP05 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 PIR:D82061
RefSeq:NP_232202.1 ProteinModelPortal:Q9KP05 SMR:Q9KP05
DNASU:2615591 GeneID:2615591 KEGG:vch:VC2574 PATRIC:20084174
Uniprot:Q9KP05
Length = 118
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVS 106
AR+ G+ IP++K +L I+G+G+TR++ IL DL + + +++EE++ +RD V+
Sbjct: 2 ARIAGINIPDHKHAVIALTAIYGIGKTRSKAILADLGIAESVKISELTEEQIDQLRDGVA 61
Query: 107 KYMIEGDL 114
KY +EGDL
Sbjct: 62 KYTVEGDL 69
>TIGR_CMR|VC_2574 [details] [associations]
symbol:VC_2574 "ribosomal protein S13" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 PIR:D82061 RefSeq:NP_232202.1
ProteinModelPortal:Q9KP05 SMR:Q9KP05 DNASU:2615591 GeneID:2615591
KEGG:vch:VC2574 PATRIC:20084174 Uniprot:Q9KP05
Length = 118
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVS 106
AR+ G+ IP++K +L I+G+G+TR++ IL DL + + +++EE++ +RD V+
Sbjct: 2 ARIAGINIPDHKHAVIALTAIYGIGKTRSKAILADLGIAESVKISELTEEQIDQLRDGVA 61
Query: 107 KYMIEGDL 114
KY +EGDL
Sbjct: 62 KYTVEGDL 69
>UNIPROTKB|A6UZL0 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:381754
"Pseudomonas aeruginosa PA7" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 EMBL:CP000744
GenomeReviews:CP000744_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_001346245.1
ProteinModelPortal:A6UZL0 SMR:A6UZL0 STRING:A6UZL0 PRIDE:A6UZL0
GeneID:5355004 KEGG:pap:PSPA7_0859 PATRIC:19823551
BioCyc:PAER381754:GHMY-924-MONOMER Uniprot:A6UZL0
Length = 118
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 33/69 (47%), Positives = 46/69 (66%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILV--DLKMENKITKDMSEEELITIRDEV 105
AR+ GV IP+NK SL YI+GVGRT A+ I + KI KD+S+E++ +R+EV
Sbjct: 2 ARIAGVNIPDNKHTVISLTYIYGVGRTTAQNICAATGVNPAAKI-KDLSDEQIDQLRNEV 60
Query: 106 SKYMIEGDL 114
+K+ EGDL
Sbjct: 61 AKHTTEGDL 69
>UNIPROTKB|O86773 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003735 "structural constituent
of ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 EMBL:AL939121
GenomeReviews:AL645882_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 PIR:T35556
RefSeq:NP_628885.1 ProteinModelPortal:O86773 SMR:O86773
PhosSite:P11111095 GeneID:1100168 KEGG:sco:SCO4727 PATRIC:23739276
Uniprot:O86773
Length = 126
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
ARV GV+IP KR+E +L Y+ G+GRT ++Q L ++ N +D+SEE+L+ IR+ V
Sbjct: 2 ARVSGVDIPREKRVEIALTYVFGIGRTLSQQTLAATGVDPNTRVRDLSEEQLVAIREYVD 61
Query: 107 KYM-IEGDL 114
+ EGDL
Sbjct: 62 NNIKTEGDL 70
>UNIPROTKB|Q9RSJ9 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:243230
"Deinococcus radiodurans R1" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:AE000513 GenomeReviews:AE000513_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 PIR:F75312
RefSeq:NP_295848.1 ProteinModelPortal:Q9RSJ9 SMR:Q9RSJ9
GeneID:1799972 KEGG:dra:DR_2125 PATRIC:21631926
BioCyc:DRAD243230:GH46-2493-MONOMER Uniprot:Q9RSJ9
Length = 126
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 28/70 (40%), Positives = 49/70 (70%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILV--DLKMENKITKDMSEEELITIRDEV 105
AR+ G+++P KR+E +L YI+G+G TR+++IL + + ++ K++SE E T+R+ +
Sbjct: 2 ARIAGIDLPREKRVEIALTYIYGIGLTRSKEILARTGVSPDTRV-KNLSEAEQSTLREAI 60
Query: 106 SK-YMIEGDL 114
K Y +EGDL
Sbjct: 61 EKTYKVEGDL 70
>UNIPROTKB|Q7NFF2 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 SUPFAM:SSF46946 GO:GO:0015935 EMBL:BA000045
GenomeReviews:BA000045_GR eggNOG:COG0099 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:NP_926520.1 ProteinModelPortal:Q7NFF2
SMR:Q7NFF2 GeneID:2601978 KEGG:gvi:gvip484 PATRIC:22046643
BioCyc:GVIO251221:GH9A-3624-MONOMER Uniprot:Q7NFF2
Length = 127
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 28/69 (40%), Positives = 47/69 (68%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV+IP KR+E +L YI G+G +RA QIL+ + N +++++ ++ +R+E+
Sbjct: 2 ARIAGVDIPREKRVEIALTYIFGIGPSRATQILLSTGINPNLRVRELTDVQVSLLREEIE 61
Query: 107 -KYMIEGDL 114
KY +EGDL
Sbjct: 62 QKYQVEGDL 70
>TIGR_CMR|CBU_0260 [details] [associations]
symbol:CBU_0260 "ribosomal protein S13/S18" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
RefSeq:NP_819304.1 ProteinModelPortal:P59753 SMR:P59753
GeneID:1208141 KEGG:cbu:CBU_0260 PATRIC:17929213
BioCyc:CBUR227377:GJ7S-267-MONOMER Uniprot:P59753
Length = 119
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME--NKITKDMSEEELITIRDEV 105
AR+ GV IP K +LQ I+G+G +RA +I + K++ K+ KD+SE EL +R EV
Sbjct: 3 ARIAGVNIPVQKHARIALQAIYGIGNSRALEICKEAKIDPATKV-KDLSEAELDALRTEV 61
Query: 106 SKYMIEGDL 114
K+ +EGDL
Sbjct: 62 GKFSVEGDL 70
>UNIPROTKB|P0A7S9 [details] [associations]
symbol:rpsM species:83333 "Escherichia coli K-12"
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000049 "tRNA binding"
evidence=IEA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 EMBL:U18997 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 PDB:3J00 PDBsum:3J00 PDB:3FIH PDB:3IZV PDB:3IZW
PDBsum:3FIH PDBsum:3IZV PDBsum:3IZW GO:GO:0022627 SUPFAM:SSF46946
PDB:3SFS PDB:3UOQ PDBsum:3SFS PDBsum:3UOQ EMBL:X02543 EMBL:M12432
eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631 PDB:4GAS
PDB:4GD1 PDBsum:4GAS PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87
PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P
PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF
PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2VHO
PDB:2VHP PDB:2WWL PDB:2YKR PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3
PDB:3E1A PDB:3E1C PDB:3I1M PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z
PDB:3I21 PDB:3J0U PDB:3J0V PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13
PDB:3J18 PDB:3KC4 PDB:3OAQ PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO
PDB:3OFP PDB:3OFX PDB:3OFY PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV
PDB:4GAQ PDB:4GD2 PDBsum:1M5G PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5
PDBsum:1VS7 PDBsum:2AVY PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB
PDBsum:2I2P PDBsum:2I2U PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9
PDBsum:2QBB PDBsum:2QBD PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ
PDBsum:2QOU PDBsum:2QOW PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO
PDBsum:2VHP PDBsum:2WWL PDBsum:2YKR PDBsum:2Z4K PDBsum:2Z4M
PDBsum:3DF1 PDBsum:3DF3 PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M
PDBsum:3I1O PDBsum:3I1Q PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21
PDBsum:3J0U PDBsum:3J0V PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10
PDBsum:3J13 PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR
PDBsum:3OFA PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX
PDBsum:3OFY PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV
PDBsum:4GAQ PDBsum:4GD2 ProtClustDB:PRK05179 EMBL:M10213 PIR:A23807
RefSeq:NP_417757.1 RefSeq:YP_492134.1 ProteinModelPortal:P0A7S9
SMR:P0A7S9 DIP:DIP-35855N IntAct:P0A7S9 MINT:MINT-1290225
PaxDb:P0A7S9 PRIDE:P0A7S9 EnsemblBacteria:EBESCT00000003493
EnsemblBacteria:EBESCT00000015980 GeneID:12934445 GeneID:947791
KEGG:ecj:Y75_p3878 KEGG:eco:b3298 PATRIC:32122028 EchoBASE:EB0905
EcoGene:EG10912 BioCyc:EcoCyc:EG10912-MONOMER
BioCyc:ECOL316407:JW3260-MONOMER EvolutionaryTrace:P0A7S9
Genevestigator:P0A7S9 Uniprot:P0A7S9
Length = 118
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVS 106
AR+ G+ IP++K +L I+GVG+TR++ IL + + ++SE ++ T+RDEV+
Sbjct: 2 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVA 61
Query: 107 KYMIEGDL 114
K+++EGDL
Sbjct: 62 KFVVEGDL 69
>UNIPROTKB|O66486 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:224324
"Aquifex aeolicus VF5" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:AE000657 GenomeReviews:AE000657_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 PIR:C70307
RefSeq:NP_213046.1 ProteinModelPortal:O66486 SMR:O66486
GeneID:1192499 KEGG:aae:aq_074 PATRIC:20957847
BioCyc:AAEO224324:GJBH-61-MONOMER Uniprot:O66486
Length = 126
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 29/69 (42%), Positives = 47/69 (68%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV++PNNKR+E +L YI+G+G +RAR+I + K +++ +EL T+R +
Sbjct: 2 ARIAGVDLPNNKRLEVALTYIYGIGWSRAREICEKTGIPCTKRVGELTPDELNTLRKFID 61
Query: 107 K-YMIEGDL 114
+ Y +EGDL
Sbjct: 62 ENYKVEGDL 70
>TIGR_CMR|DET_0499 [details] [associations]
symbol:DET_0499 "ribosomal protein S13" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:YP_181243.1 ProteinModelPortal:Q3Z956
SMR:Q3Z956 STRING:Q3Z956 GeneID:3230223 KEGG:det:DET0499
PATRIC:21608067 BioCyc:DETH243164:GJNF-499-MONOMER Uniprot:Q3Z956
Length = 129
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK 107
R+ G +IP+NK++ +SLQYI G+G R+ ++LV ++ I +++EE+ +R+ + K
Sbjct: 3 RIAGTDIPDNKQVYFSLQYIFGIGPARSEKVLVQAGVDKAIRVNKLTDEEINRLREIIDK 62
Query: 108 -YMIEGDL 114
Y +EGDL
Sbjct: 63 EYRVEGDL 70
>TIGR_CMR|ECH_0430 [details] [associations]
symbol:ECH_0430 "ribosomal protein S13" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_507248.1
ProteinModelPortal:Q2GH35 SMR:Q2GH35 STRING:Q2GH35 GeneID:3927582
KEGG:ech:ECH_0430 PATRIC:20576337
BioCyc:ECHA205920:GJNR-431-MONOMER Uniprot:Q2GH35
Length = 123
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/69 (39%), Positives = 47/69 (68%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS 106
AR+ GV IP NKRI +L YI+G+G + A +I +++ + ++S++E+I IR+ +
Sbjct: 2 ARIAGVNIPTNKRIVIALTYIYGIGLSLANRICEGCNIDHNVRVVNLSDDEIIRIRNFIR 61
Query: 107 K-YMIEGDL 114
+ Y++EGDL
Sbjct: 62 ENYIVEGDL 70
>UNIPROTKB|Q9X1I5 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:243274
"Thermotoga maritima MSB8" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:AE000512 GenomeReviews:AE000512_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 PIR:D72247 RefSeq:NP_229275.1
ProteinModelPortal:Q9X1I5 SMR:Q9X1I5 GeneID:897029 KEGG:tma:TM1475
PATRIC:23937906 Uniprot:Q9X1I5
Length = 125
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GVE+PNNK++ +L YI+G+GR+R+ +IL + ++ K D+++EE+ I +
Sbjct: 2 ARIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKITKYIQ 61
Query: 107 KYM-IEGDL 114
+ +EG+L
Sbjct: 62 DHFKVEGEL 70
>TIGR_CMR|SPO_0509 [details] [associations]
symbol:SPO_0509 "ribosomal protein S13" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946
eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:YP_165771.1 ProteinModelPortal:Q5LW34
SMR:Q5LW34 GeneID:3195393 KEGG:sil:SPO0509 PATRIC:23374281
Uniprot:Q5LW34
Length = 122
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV- 105
AR+ GV IP KR+ +L YI G+G T A+ I + ++ + ++S+ E++ IR+ +
Sbjct: 2 ARIAGVNIPTAKRVPIALTYITGIGNTSAKAICEAVGIDATRRVNELSDAEILAIREHID 61
Query: 106 SKYMIEGDL 114
+ Y +EGDL
Sbjct: 62 ANYSVEGDL 70
>UNIPROTKB|Q8A499 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:AE015928 GenomeReviews:AE015928_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:NP_811616.1
ProteinModelPortal:Q8A499 SMR:Q8A499 GeneID:1072473
KEGG:bth:BT_2704 PATRIC:21060349
BioCyc:BTHE226186:GJXV-2758-MONOMER Uniprot:Q8A499
Length = 126
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 24/68 (35%), Positives = 46/68 (67%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-S 106
R+ GV++P NKR E +L Y++G+GR+ + +IL ++ + KD ++++ IR+ + +
Sbjct: 4 RIVGVDLPQNKRGEIALTYVYGIGRSSSAKILDKAGVDKDLKVKDWTDDQAAKIREIIGA 63
Query: 107 KYMIEGDL 114
+Y +EGDL
Sbjct: 64 EYKVEGDL 71
>TIGR_CMR|CPS_0623 [details] [associations]
symbol:CPS_0623 "ribosomal protein S13" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946
eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:YP_267373.1 ProteinModelPortal:Q488Z1
SMR:Q488Z1 STRING:Q488Z1 PRIDE:Q488Z1 GeneID:3519508
KEGG:cps:CPS_0623 PATRIC:21464573
BioCyc:CPSY167879:GI48-710-MONOMER Uniprot:Q488Z1
Length = 118
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ G+ IP+ K ++ I+G+G TRA+ I + E+ ++ E ++ +R EV
Sbjct: 2 ARIAGINIPDRKHAVIAITAIYGIGATRAKAICAATGIAESTKISELDEAKIDLLRAEVD 61
Query: 107 KYMIEGDL 114
K+ +EGDL
Sbjct: 62 KFTVEGDL 69
>TIGR_CMR|APH_0301 [details] [associations]
symbol:APH_0301 "ribosomal protein S13" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
RefSeq:YP_504913.1 ProteinModelPortal:Q2GL38 SMR:Q2GL38
STRING:Q2GL38 GeneID:3931105 KEGG:aph:APH_0301 PATRIC:20949176
ProtClustDB:PRK05179 BioCyc:APHA212042:GHPM-331-MONOMER
Uniprot:Q2GL38
Length = 123
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 23/69 (33%), Positives = 44/69 (63%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV- 105
AR+GGV +P +KR+ +L YI+G+G + A +I ++ + +SEE+++ IR+ +
Sbjct: 2 ARIGGVNVPVDKRVVVALTYIYGIGTSLANRICEGCGIDKNVRVSALSEEDVVKIRNFIR 61
Query: 106 SKYMIEGDL 114
+ ++E DL
Sbjct: 62 AGCVVEADL 70
>UNIPROTKB|Q9XD12 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003735
"structural constituent of ribosome" evidence=IBA] [GO:0005829
"cytosol" evidence=IBA] [GO:0006412 "translation" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IBA] [GO:0042254
"ribosome biogenesis" evidence=IBA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 GO:GO:0015935
EMBL:AE010300 GenomeReviews:AE010300_GR eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
EMBL:AF115283 RefSeq:NP_710943.1 ProteinModelPortal:Q9XD12
SMR:Q9XD12 PaxDb:Q9XD12 PRIDE:Q9XD12 GeneID:1150105
KEGG:lil:LA_0762 PATRIC:22382384 BioCyc:LINT189518:GJBB-621-MONOMER
Uniprot:Q9XD12
Length = 125
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIR---D 103
AR+ G+++P KRI L YI G+G + ++ IL ++ I KD++E + IR +
Sbjct: 2 ARIAGIDLPREKRIVVGLTYIFGIGNSLSKLILKKAGIDESIRVKDLNESQEAAIRKTLE 61
Query: 104 EVSKYMIEGDL 114
E +K +EGDL
Sbjct: 62 ETAK--VEGDL 70
>UNIPROTKB|Q3KLI8 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:CP000051 GenomeReviews:CP000051_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_328332.1
ProteinModelPortal:Q3KLI8 SMR:Q3KLI8 STRING:Q3KLI8 GeneID:3687704
KEGG:cta:CTA_0558 PATRIC:32023022
BioCyc:CTRA315277:GI4C-584-MONOMER Uniprot:Q3KLI8
Length = 122
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 22/68 (32%), Positives = 45/68 (66%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-S 106
R+ G++IP K+++ SL YI+G+G +++I+ L++ + +++EEE+ + + S
Sbjct: 3 RIIGIDIPAKKKLKISLTYIYGIGPALSKEIIARLQLNPEARAAELTEEEVGRLNALLQS 62
Query: 107 KYMIEGDL 114
Y++EGDL
Sbjct: 63 DYVVEGDL 70
>TIGR_CMR|NSE_0287 [details] [associations]
symbol:NSE_0287 "ribosomal protein S13" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:YP_506178.1 ProteinModelPortal:Q2GEB8
SMR:Q2GEB8 STRING:Q2GEB8 PRIDE:Q2GEB8 GeneID:3932234
KEGG:nse:NSE_0287 PATRIC:22680667
BioCyc:NSEN222891:GHFU-314-MONOMER Uniprot:Q2GEB8
Length = 123
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 52 GVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYM- 109
GV +P+NK + +L Y++G+G AR+I L ++ D+ +E+L +I + +
Sbjct: 5 GVNLPDNKAVVVALTYLYGIGLPTARKICSSLAIDGSAKLPDLEQEQLNSIMAYIKNDIP 64
Query: 110 IEGDL 114
EG+L
Sbjct: 65 FEGEL 69
>POMBASE|SPCC1795.07 [details] [associations]
symbol:SPCC1795.07 "mitochondrial ribosomal protein
subunit S37 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0019843 "rRNA
binding" evidence=IEA] [GO:0032543 "mitochondrial translation"
evidence=ISO] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 PomBase:SPCC1795.07 GO:GO:0005829 GO:GO:0005634
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003735 GO:GO:0032543
GO:GO:0019843 GO:GO:0005763 SUPFAM:SSF46946 eggNOG:COG0099
KO:K02952 HAMAP:MF_01315 PANTHER:PTHR10871 HOGENOM:HOG000039878
OMA:RSATTLF PIR:T41136 RefSeq:NP_588037.1 ProteinModelPortal:O59772
STRING:O59772 EnsemblFungi:SPCC1795.07.1 GeneID:2538943
KEGG:spo:SPCC1795.07 OrthoDB:EOG4WHCWG NextBio:20800119
Uniprot:O59772
Length = 151
Score = 90 (36.7 bits), Expect = 0.00075, P = 0.00074
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 52 GVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMI 110
GV + ++K + ++L +G+G +A +I L N + ++++ +L T+ +S I
Sbjct: 6 GVAVNDDKPVRFALLSFYGIGHAKAEEICAKLSFHNTLRVRELTNVQLTTLSQLLSGMTI 65
Query: 111 EGDL 114
EGDL
Sbjct: 66 EGDL 69
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 126 126 0.00091 102 3 11 22 0.37 31
29 0.40 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 519 (55 KB)
Total size of DFA: 112 KB (2076 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.37u 0.20s 13.57t Elapsed: 00:00:01
Total cpu time: 13.37u 0.20s 13.57t Elapsed: 00:00:01
Start: Fri May 10 16:12:02 2013 End: Fri May 10 16:12:03 2013