BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033150
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42732|RR13_ARATH 30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana
GN=RPS13 PE=2 SV=1
Length = 169
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/114 (72%), Positives = 95/114 (83%)
Query: 1 MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR 60
M Q +AMPVA +LS+ICN +N L+ +L+ P S P LSI+CARVGGVEIP NKR
Sbjct: 1 MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60
Query: 61 IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDL 114
IEYSLQYIHG+GRTRARQILVDL+MENKITKDM+EEELI +RDEVSKYMIEGDL
Sbjct: 61 IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL 114
>sp|P82163|RR13_SPIOL 30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea
GN=RPS13 PE=1 SV=2
Length = 145
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 67/80 (83%), Gaps = 2/80 (2%)
Query: 27 NASLSFPVSKQPQ--YPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK 84
++S+SFP K+ + GL I+C R+GGVEIPN+KR+EYSLQYIHG+GR+R+RQIL+DL
Sbjct: 24 SSSVSFPAPKKGGIGHGGLQIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLN 83
Query: 85 MENKITKDMSEEELITIRDE 104
+NK+TKD+SEEE+I +R E
Sbjct: 84 FDNKVTKDLSEEEVIILRKE 103
>sp|B5EM96|RS13_ACIF5 30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain
ATCC 53993) GN=rpsM PE=3 SV=1
Length = 118
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV 105
AR+ GV IPNNK+IE +L YI+G+GRTRAR +L D+ + ++ KD+SE EL IR EV
Sbjct: 2 ARIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRV-KDISEPELERIRSEV 60
Query: 106 SKYMIEGDL 114
+K+++EGDL
Sbjct: 61 AKFLVEGDL 69
>sp|B7J4A1|RS13_ACIF2 30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain
ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpsM PE=3 SV=1
Length = 118
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV 105
AR+ GV IPNNK+IE +L YI+G+GRTRAR +L D+ + ++ KD+SE EL IR EV
Sbjct: 2 ARIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRV-KDISEPELERIRSEV 60
Query: 106 SKYMIEGDL 114
+K+++EGDL
Sbjct: 61 AKFLVEGDL 69
>sp|Q9RDV8|RS13_MYCGA 30S ribosomal protein S13 OS=Mycoplasma gallisepticum (strain R(low
/ passage 15 / clone 2)) GN=rpsM PE=3 SV=3
Length = 124
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ G++IPNNKR+E SL YI+G+G+ RA++IL K++ NK KD+S+EEL IR S
Sbjct: 2 ARILGIDIPNNKRVEISLTYIYGIGKPRAQEILRKAKIDFNKRVKDLSDEELALIRSVAS 61
Query: 107 KYMIEGDL 114
Y++EGDL
Sbjct: 62 TYVLEGDL 69
>sp|Q8LPW2|RT13_SOYBN Small ribosomal subunit protein S13, mitochondrial OS=Glycine max
GN=RSP13 PE=3 SV=1
Length = 148
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 49/61 (80%)
Query: 54 EIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGD 113
EIP+NKR+ Y+LQ +HG+GR++A+ I+ +L +ENK KD+S+ EL +IR+ +SKY+I D
Sbjct: 38 EIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGND 97
Query: 114 L 114
L
Sbjct: 98 L 98
>sp|Q8EUD6|RS13_MYCPE 30S ribosomal protein S13 OS=Mycoplasma penetrans (strain HF-2)
GN=rpsM PE=3 SV=1
Length = 124
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IPNNKR+ SL YI G+G++R+++IL K+ ENK +SEEEL TIR S
Sbjct: 2 ARILGVDIPNNKRVVISLTYIFGIGKSRSQEILSKAKIDENKKVSALSEEELATIRKIAS 61
Query: 107 KYMIEGDL 114
+Y+IEGDL
Sbjct: 62 EYVIEGDL 69
>sp|P47421|RS13_MYCGE 30S ribosomal protein S13 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=rpsM PE=3 SV=2
Length = 124
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ G++IPN KRIE +L YI G+G + A+ IL K+ +K KD+SEEEL+ IR+ S
Sbjct: 2 ARILGIDIPNQKRIEIALTYIFGIGLSSAKTILKKAKINPDKRVKDLSEEELVAIRNAAS 61
Query: 107 KYMIEGDL 114
Y IEGDL
Sbjct: 62 GYKIEGDL 69
>sp|B3PMM3|RS13_MYCA5 30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain
158L3-1) GN=rpsM PE=3 SV=1
Length = 122
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
ARV VEIPN KR SL YI G+G+T A QIL D + ENK + +SEEEL IR+E
Sbjct: 2 ARVLNVEIPNKKRAVISLTYIFGIGKTLASQILKDANVDENKKVESLSEEELTRIREEAK 61
Query: 107 KYMIEGDL 114
KY+ EGDL
Sbjct: 62 KYVTEGDL 69
>sp|P38017|RS13_MYCSP 30S ribosomal protein S13 OS=Mycoplasma sp. GN=rpsM PE=3 SV=2
Length = 119
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
ARV +EIPNNK+ SL YI G+G T A+QIL D ++ K K+++EEEL IRDE
Sbjct: 2 ARVLNIEIPNNKKARISLTYIFGIGPTIAKQILADANVDGEKRVKELTEEELTRIRDEAK 61
Query: 107 KYMIEGDL 114
KY EGDL
Sbjct: 62 KYTTEGDL 69
>sp|Q8G3Z5|RS13_BIFLO 30S ribosomal protein S13 OS=Bifidobacterium longum (strain NCC
2705) GN=rpsM PE=3 SV=1
Length = 125
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV- 105
AR+ GV+IPN KRIE +L YI GVGRTRA++ L + I KD+++E+LIT+RD +
Sbjct: 2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLE 61
Query: 106 SKYMIEGDL 114
+ Y IEGDL
Sbjct: 62 ANYKIEGDL 70
>sp|B3DQD8|RS13_BIFLD 30S ribosomal protein S13 OS=Bifidobacterium longum (strain DJO10A)
GN=rpsM PE=3 SV=1
Length = 125
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV- 105
AR+ GV+IPN KRIE +L YI GVGRTRA++ L + I KD+++E+LIT+RD +
Sbjct: 2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLE 61
Query: 106 SKYMIEGDL 114
+ Y IEGDL
Sbjct: 62 ANYKIEGDL 70
>sp|B7GNB6|RS13_BIFLS 30S ribosomal protein S13 OS=Bifidobacterium longum subsp. infantis
(strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 /
S12) GN=rpsM PE=3 SV=1
Length = 125
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV- 105
AR+ GV+IPN KRIE +L YI GVGRTRA++ L + I KD+++E+LIT+RD +
Sbjct: 2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLE 61
Query: 106 SKYMIEGDL 114
+ Y IEGDL
Sbjct: 62 ANYKIEGDL 70
>sp|Q9CA19|RT13_ARATH Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis
thaliana GN=RPS13 PE=2 SV=1
Length = 154
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 59/94 (62%), Gaps = 5/94 (5%)
Query: 24 LLTNASLSFPVS----KQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQI 79
L +A+ F +S + + GL +Q RVG E+PNNK ++ LQ ++G+GR ++ Q+
Sbjct: 4 LRRSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQV 63
Query: 80 LVDLKMENKITKDMSEEELITIRDEVSKYMIEGD 113
L L + NK+ +D++ +ELI +R+EV ++ GD
Sbjct: 64 LCHLGITNKLARDLTGKELIDLREEVGQHQ-HGD 96
>sp|A1A093|RS13_BIFAA 30S ribosomal protein S13 OS=Bifidobacterium adolescentis (strain
ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) GN=rpsM
PE=3 SV=2
Length = 125
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV- 105
AR+ GV+IPN KRIE +L YI GVGRTRA++ L + I KD+++E+LIT+RD +
Sbjct: 2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGINPDIRVKDLTDEQLITLRDYLE 61
Query: 106 SKYMIEGDL 114
Y IEGDL
Sbjct: 62 GNYKIEGDL 70
>sp|Q6KI31|RS13_MYCMO 30S ribosomal protein S13 OS=Mycoplasma mobile (strain ATCC 43663 /
163K / NCTC 11711) GN=rpsM PE=3 SV=1
Length = 122
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS 106
AR+ VEIPNNKR+ SL Y++G+GR+ ++QIL + ++ I KD+SEE+L IR+ S
Sbjct: 2 ARILNVEIPNNKRVIISLTYVYGIGRSLSKQILAEANIDENIRVKDLSEEDLTKIRNIAS 61
Query: 107 KYMIEGDL 114
++ EGDL
Sbjct: 62 RFTTEGDL 69
>sp|Q65P81|RS13_BACLD 30S ribosomal protein S13 OS=Bacillus licheniformis (strain DSM 13
/ ATCC 14580) GN=rpsM PE=3 SV=1
Length = 121
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP +KR+ SL YI G+GRT A+QIL + + E+ +D++EEEL IRD +
Sbjct: 2 ARIAGVDIPRDKRVVISLTYIFGIGRTTAQQILKEAGVSEDTRVRDLTEEELGKIRDVID 61
Query: 107 KYMIEGDL 114
K +EGDL
Sbjct: 62 KLKVEGDL 69
>sp|B5YDW7|RS13_DICT6 30S ribosomal protein S13 OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=rpsM PE=3 SV=1
Length = 124
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 53/69 (76%), Gaps = 2/69 (2%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV- 105
AR+ GV++P+NK+IE +L YI+G+GRT +++IL ++ NK KD++EEE+ +R+E+
Sbjct: 2 ARIAGVDLPSNKKIEIALTYIYGIGRTTSKKILQATGVDPNKRVKDLTEEEISKLREEIE 61
Query: 106 SKYMIEGDL 114
+ Y +EGDL
Sbjct: 62 NNYKVEGDL 70
>sp|O50632|RS13_BACHD 30S ribosomal protein S13 OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=rpsM PE=3 SV=1
Length = 121
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP +KR+ SL YI+GVGR+ A++IL + EN +D++EEEL IR V
Sbjct: 2 ARIAGVDIPRDKRVVISLTYIYGVGRSTAQEILAKANVSENTRVRDLTEEELGRIRSAVE 61
Query: 107 KYMIEGDL 114
++ +EGDL
Sbjct: 62 EFKVEGDL 69
>sp|Q50297|RS13_MYCPN 30S ribosomal protein S13 OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=rpsM PE=3 SV=1
Length = 124
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ G++IPN KRIE +L YI G+G +R++ IL + +K KD++EEE + IR+ S
Sbjct: 2 ARILGIDIPNQKRIEIALTYIFGIGLSRSQAILKQANINPDKRVKDLTEEEFVAIRNVAS 61
Query: 107 KYMIEGDL 114
Y IEGDL
Sbjct: 62 AYKIEGDL 69
>sp|Q1R0F3|RS13_CHRSD 30S ribosomal protein S13 OS=Chromohalobacter salexigens (strain
DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rpsM PE=3 SV=1
Length = 118
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV IP+NK SL YI G+GRTRA++I + +D+S EE+ T+R+EV
Sbjct: 2 ARIAGVNIPDNKHAAISLTYIFGIGRTRAQEICAATGIAPTAKVQDLSAEEVDTLRNEVG 61
Query: 107 KYMIEGDL 114
KY +EGDL
Sbjct: 62 KYTVEGDL 69
>sp|A5IYW1|RS13_MYCAP 30S ribosomal protein S13 OS=Mycoplasma agalactiae (strain PG2)
GN=rpsM PE=3 SV=1
Length = 123
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS 106
AR+ +EIPNNKR+ SL YI+G+GRT A++I K++ I KD+SE +L IR+
Sbjct: 2 ARILNIEIPNNKRVVISLTYIYGIGRTSAQEICAKAKIDENIRVKDLSEAQLSAIREIAK 61
Query: 107 KYMIEGDL 114
+Y+ EGDL
Sbjct: 62 EYVTEGDL 69
>sp|B8E1F7|RS13_DICTD 30S ribosomal protein S13 OS=Dictyoglomus turgidum (strain Z-1310 /
DSM 6724) GN=rpsM PE=3 SV=1
Length = 124
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 53/69 (76%), Gaps = 2/69 (2%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV- 105
AR+ GV++P+NK++E +L YI+G+GRT +++IL ++ NK KD++EEE+ +R+E+
Sbjct: 2 ARIAGVDLPSNKKVEIALTYIYGIGRTTSKKILQATGVDPNKRVKDLTEEEISKLREEIE 61
Query: 106 SKYMIEGDL 114
+ Y +EGDL
Sbjct: 62 NNYKVEGDL 70
>sp|P20282|RS13_BACSU 30S ribosomal protein S13 OS=Bacillus subtilis (strain 168) GN=rpsM
PE=1 SV=3
Length = 121
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP +KR+ SL YI G+GRT A+Q+L + + E+ +D++EEEL IRD +
Sbjct: 2 ARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIID 61
Query: 107 KYMIEGDL 114
K +EGDL
Sbjct: 62 KLKVEGDL 69
>sp|Q6AD19|RS13_LEIXX 30S ribosomal protein S13 OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=rpsM PE=3 SV=1
Length = 124
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV- 105
AR+ GV+IP KR+E +L YI+GVGRTRA Q L + ++ +I KD+++E+L+++RD +
Sbjct: 2 ARLAGVDIPREKRVEVALTYIYGVGRTRALQTLRETEISGEIRVKDLTDEQLVSLRDYIE 61
Query: 106 SKYMIEGDL 114
+ +EGDL
Sbjct: 62 GNFKVEGDL 70
>sp|A7Z0R3|RS13_BACA2 30S ribosomal protein S13 OS=Bacillus amyloliquefaciens (strain
FZB42) GN=rpsM PE=3 SV=1
Length = 121
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP +KR+ SL Y+ G+GRT A+Q+L + + E+ +D++EEEL IRD +
Sbjct: 2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDVID 61
Query: 107 KYMIEGDL 114
K +EGDL
Sbjct: 62 KLKVEGDL 69
>sp|Q21M36|RS13_SACD2 30S ribosomal protein S13 OS=Saccharophagus degradans (strain 2-40
/ ATCC 43961 / DSM 17024) GN=rpsM PE=3 SV=1
Length = 118
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV IP++K SL Y++G+GRT+A+QI + E+ D+SEE++ TIR+EV+
Sbjct: 2 ARIAGVNIPDHKHAVISLTYVYGIGRTKAKQICSAAGVAESTKIGDLSEEQVDTIRNEVA 61
Query: 107 KYMIEGDL 114
K+ +EGDL
Sbjct: 62 KFTVEGDL 69
>sp|B1HMV7|RS13_LYSSC 30S ribosomal protein S13 OS=Lysinibacillus sphaericus (strain
C3-41) GN=rpsM PE=3 SV=1
Length = 121
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP +KR+ SL YI G+G+T A+++L D + E+ +D++E+EL IR+++
Sbjct: 2 ARIAGVDIPRDKRVVISLTYIFGIGKTTAQKVLADAGISEDTRVRDLTEDELNKIREQLD 61
Query: 107 KYMIEGDL 114
Y +EGDL
Sbjct: 62 SYKLEGDL 69
>sp|B1JAJ0|RS13_PSEPW 30S ribosomal protein S13 OS=Pseudomonas putida (strain W619)
GN=rpsM PE=3 SV=1
Length = 118
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVS 106
AR+ GV IP+NK SL YI+GVGRT A++I D + KD+S+E++ T+R EV+
Sbjct: 2 ARIAGVNIPDNKHTVISLTYIYGVGRTTAQKICADAGVNPAAKIKDLSDEQIETLRGEVA 61
Query: 107 KYMIEGDL 114
K+ EGDL
Sbjct: 62 KFTTEGDL 69
>sp|Q88QL3|RS13_PSEPK 30S ribosomal protein S13 OS=Pseudomonas putida (strain KT2440)
GN=rpsM PE=3 SV=1
Length = 118
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVS 106
AR+ GV IP+NK SL YI+GVGRT A++I D + KD+S+E++ T+R EV+
Sbjct: 2 ARIAGVNIPDNKHTVISLTYIYGVGRTTAQKICADAGVNPAAKIKDLSDEQIETLRGEVA 61
Query: 107 KYMIEGDL 114
K+ EGDL
Sbjct: 62 KFTTEGDL 69
>sp|B0KK88|RS13_PSEPG 30S ribosomal protein S13 OS=Pseudomonas putida (strain GB-1)
GN=rpsM PE=3 SV=1
Length = 118
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVS 106
AR+ GV IP+NK SL YI+GVGRT A++I D + KD+S+E++ T+R EV+
Sbjct: 2 ARIAGVNIPDNKHTVISLTYIYGVGRTTAQKICADAGVNPAAKIKDLSDEQIETLRGEVA 61
Query: 107 KYMIEGDL 114
K+ EGDL
Sbjct: 62 KFTTEGDL 69
>sp|A5VXR9|RS13_PSEP1 30S ribosomal protein S13 OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=rpsM PE=3 SV=1
Length = 118
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVS 106
AR+ GV IP+NK SL YI+GVGRT A++I D + KD+S+E++ T+R EV+
Sbjct: 2 ARIAGVNIPDNKHTVISLTYIYGVGRTTAQKICADAGVNPAAKIKDLSDEQIETLRGEVA 61
Query: 107 KYMIEGDL 114
K+ EGDL
Sbjct: 62 KFTTEGDL 69
>sp|Q1IFU4|RS13_PSEE4 30S ribosomal protein S13 OS=Pseudomonas entomophila (strain L48)
GN=rpsM PE=3 SV=1
Length = 118
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVS 106
AR+ GV IP+NK SL YI+GVGRT A++I D + KD+S+E++ T+R EV+
Sbjct: 2 ARIAGVNIPDNKHTVISLTYIYGVGRTTAQKICADAGVNPAAKIKDLSDEQIETLRGEVA 61
Query: 107 KYMIEGDL 114
K+ EGDL
Sbjct: 62 KFTTEGDL 69
>sp|B8D0T4|RS13_HALOH 30S ribosomal protein S13 OS=Halothermothrix orenii (strain H 168 /
OCM 544 / DSM 9562) GN=rpsM PE=3 SV=1
Length = 122
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV++P NKR+E L YI+G+GR+ + +IL ++ + KD++E E+ +R+EV
Sbjct: 2 ARIAGVDLPRNKRVEIGLTYIYGIGRSTSNKILKVTGIDPDTRVKDLTEAEIAKLREEVD 61
Query: 107 KYMIEGDL 114
KY +EGDL
Sbjct: 62 KYQVEGDL 69
>sp|A9NEF8|RS13_ACHLI 30S ribosomal protein S13 OS=Acholeplasma laidlawii (strain PG-8A)
GN=rpsM PE=3 SV=1
Length = 124
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS 106
AR+ GV+IP KR+ SLQYI+G+G+T A+++L + + I KD+++++L IR EV+
Sbjct: 2 ARIAGVDIPTQKRVVISLQYIYGIGQTTAQEVLKNANVSEDIRVKDLNDDQLSAIRGEVA 61
Query: 107 KYMIEGDL 114
K + EGDL
Sbjct: 62 KIVTEGDL 69
>sp|A8F9B0|RS13_BACP2 30S ribosomal protein S13 OS=Bacillus pumilus (strain SAFR-032)
GN=rpsM PE=3 SV=1
Length = 121
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP +KR+ SL Y+ G+GRT A+Q+L + + E+ +D++E+EL IRD +
Sbjct: 2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAQQVLKEAGVSEDTRVRDLTEDELGKIRDIID 61
Query: 107 KYMIEGDL 114
K +EGDL
Sbjct: 62 KLKVEGDL 69
>sp|Q2SRH7|RS13_MYCCT 30S ribosomal protein S13 OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=rpsM PE=3 SV=1
Length = 121
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS 106
AR+ GVEIPNNKR+ SL YI+G+G A+ +L L + I KD++EE++ I E+S
Sbjct: 2 ARISGVEIPNNKRVVVSLTYIYGIGLPTAQSVLKTLNISEDIRVKDLTEEQIKNISIEIS 61
Query: 107 KYMIEGDL 114
KY EG+L
Sbjct: 62 KYKTEGEL 69
>sp|Q8ETW0|RS13_OCEIH 30S ribosomal protein S13 OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=rpsM PE=3
SV=1
Length = 121
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ G++IP +KR+ SL YI+GVG+T A+QIL + + E+ +D++E+EL IR V
Sbjct: 2 ARIAGIDIPRDKRVVISLTYIYGVGKTTAQQILKEAGVSEDTRVRDLTEDELGRIRQAVD 61
Query: 107 KYMIEGDL 114
+Y EGDL
Sbjct: 62 QYNTEGDL 69
>sp|B1I1M4|RS13_DESAP 30S ribosomal protein S13 OS=Desulforudis audaxviator (strain
MP104C) GN=rpsM PE=3 SV=1
Length = 123
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 53/70 (75%), Gaps = 4/70 (5%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV 105
AR+ GV++P +KR+E +L YI+G+GR+ A+Q+L V++ E ++ +D++EEE+ +RD +
Sbjct: 2 ARISGVDLPRDKRVEVALTYIYGIGRSSAKQLLEQVNVNPETRV-RDLTEEEISRLRDLI 60
Query: 106 SK-YMIEGDL 114
K Y +EGDL
Sbjct: 61 DKEYKVEGDL 70
>sp|A4XLQ5|RS13_CALS8 30S ribosomal protein S13 OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=rpsM PE=3 SV=1
Length = 124
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV++P KRIE +L YI G+G +R++QIL D ++ NK KD++++E+ IRD +
Sbjct: 2 ARIAGVDLPREKRIEIALTYIFGIGLSRSKQILRDTGVDPNKRVKDLTDDEVAKIRDYID 61
Query: 107 K-YMIEGDL 114
K + +EG+L
Sbjct: 62 KNFKVEGEL 70
>sp|Q2S934|RS13_HAHCH 30S ribosomal protein S13 OS=Hahella chejuensis (strain KCTC 2396)
GN=rpsM PE=3 SV=1
Length = 118
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV 105
AR+ GV IP+NK E SL YI+G+GRT +R + + + K+ KD+SEE+L +R+E+
Sbjct: 2 ARIAGVNIPDNKHTEVSLTYIYGIGRTTSRGLCERTGISPQAKV-KDLSEEQLDVLRNEI 60
Query: 106 SKYMIEGDL 114
+K ++EGDL
Sbjct: 61 AKMVVEGDL 69
>sp|Q0AUK6|RS13_SYNWW 30S ribosomal protein S13 OS=Syntrophomonas wolfei subsp. wolfei
(strain Goettingen) GN=rpsM PE=3 SV=1
Length = 122
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV++P +KRIE SL YI G+GR+ +R+IL D + + KD++EEE+ +R+ +
Sbjct: 2 ARIAGVDLPRDKRIEVSLTYIFGIGRSSSRKILTDAGINPDTRVKDLTEEEVSKLREIIE 61
Query: 107 K-YMIEGDL 114
K Y +EGDL
Sbjct: 62 KEYHVEGDL 70
>sp|Q39KE4|RS13_BURS3 30S ribosomal protein S13 OS=Burkholderia sp. (strain 383) GN=rpsM
PE=3 SV=1
Length = 121
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV IPN++ E L I GVGRTR+R I V ++ +K KD+++ +L +R+EV
Sbjct: 2 ARIAGVNIPNHQHTEIGLTAIFGVGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEVG 61
Query: 107 KYMIEGDL 114
K+++EGDL
Sbjct: 62 KFVVEGDL 69
>sp|A0K3P8|RS13_BURCH 30S ribosomal protein S13 OS=Burkholderia cenocepacia (strain
HI2424) GN=rpsM PE=3 SV=1
Length = 121
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV IPN++ E L I GVGRTR+R I V ++ +K KD+++ +L +R+EV
Sbjct: 2 ARIAGVNIPNHQHTEIGLTAIFGVGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEVG 61
Query: 107 KYMIEGDL 114
K+++EGDL
Sbjct: 62 KFVVEGDL 69
>sp|B1JU45|RS13_BURCC 30S ribosomal protein S13 OS=Burkholderia cenocepacia (strain
MC0-3) GN=rpsM PE=3 SV=1
Length = 121
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV IPN++ E L I GVGRTR+R I V ++ +K KD+++ +L +R+EV
Sbjct: 2 ARIAGVNIPNHQHTEIGLTAIFGVGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEVG 61
Query: 107 KYMIEGDL 114
K+++EGDL
Sbjct: 62 KFVVEGDL 69
>sp|Q1BRX1|RS13_BURCA 30S ribosomal protein S13 OS=Burkholderia cenocepacia (strain AU
1054) GN=rpsM PE=3 SV=1
Length = 121
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV IPN++ E L I GVGRTR+R I V ++ +K KD+++ +L +R+EV
Sbjct: 2 ARIAGVNIPNHQHTEIGLTAIFGVGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEVG 61
Query: 107 KYMIEGDL 114
K+++EGDL
Sbjct: 62 KFVVEGDL 69
>sp|Q211H0|RS13_RHOPB 30S ribosomal protein S13 OS=Rhodopseudomonas palustris (strain
BisB18) GN=rpsM PE=3 SV=2
Length = 122
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV IP NKR+ +LQYIHG+G+ A +IL +K+ ++K +S++E++ IR+ +
Sbjct: 2 ARIAGVNIPTNKRVLIALQYIHGIGQKNAAEILEKVKIADDKRVNQLSDQEVLQIREVID 61
Query: 107 K-YMIEGDL 114
+ YM+EGDL
Sbjct: 62 RDYMVEGDL 70
>sp|Q6MSP7|RS13_MYCMS 30S ribosomal protein S13 OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=rpsM PE=3 SV=1
Length = 121
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS 106
AR+ GVEIPNNKR+ SL YI+G+G A+ +L L + I KD++EE++ I E+S
Sbjct: 2 ARISGVEIPNNKRVVVSLTYIYGIGLPTAQSVLKTLNISEDIRVKDLTEEQIKNISMEIS 61
Query: 107 KYMIEGDL 114
KY EG L
Sbjct: 62 KYKTEGKL 69
>sp|B1VAC3|RS13_PHYAS 30S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3
SV=1
Length = 121
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS 106
AR+ G++IP++KR+ +L YI+G+G+ +++IL +L + + I K+++E++L ++R E++
Sbjct: 2 ARIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEIT 61
Query: 107 KYMIEGDL 114
KY +EGDL
Sbjct: 62 KYSVEGDL 69
>sp|B3R015|RS13_PHYMT 30S ribosomal protein S13 OS=Phytoplasma mali (strain AT) GN=rpsM
PE=3 SV=1
Length = 127
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 4/71 (5%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITK--DMSEEELITIRDEV 105
AR+ GVEIP+NKR+ +L YI G+G +A+ IL DLK + TK D+ E+ LI IR+++
Sbjct: 2 ARIAGVEIPSNKRVVIALTYIRGIGIKKAQNILSDLKEIDINTKVEDLKEQHLIAIRNKI 61
Query: 106 --SKYMIEGDL 114
Y++EGDL
Sbjct: 62 QNGNYLVEGDL 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,110,764
Number of Sequences: 539616
Number of extensions: 1681120
Number of successful extensions: 6186
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 4943
Number of HSP's gapped (non-prelim): 859
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)