Query 033150
Match_columns 126
No_of_seqs 107 out of 968
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 17:08:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_M Ribosomal protein S13; 99.9 4.4E-29 1.5E-33 187.8 -4.5 107 2-123 4-112 (145)
2 2xzm_M RPS18E; ribosome, trans 99.9 3.3E-26 1.1E-30 173.7 2.8 81 39-123 10-114 (155)
3 3u5c_S 40S ribosomal protein S 99.9 5.1E-26 1.7E-30 171.2 3.5 82 39-124 10-115 (146)
4 2vqe_M 30S ribosomal protein S 99.9 1.2E-26 4.1E-31 171.0 -0.4 77 47-123 1-79 (126)
5 3iz6_M 40S ribosomal protein S 99.9 5.7E-26 2E-30 171.9 3.0 87 33-123 2-112 (152)
6 3r8n_M 30S ribosomal protein S 99.9 8.1E-26 2.8E-30 164.0 2.4 76 48-123 1-77 (114)
7 3j20_O 30S ribosomal protein S 99.9 9.2E-26 3.1E-30 170.1 1.6 78 46-123 6-107 (148)
8 2a1j_A DNA repair endonuclease 93.4 0.042 1.4E-06 34.8 2.2 37 64-101 5-41 (63)
9 3arc_U Photosystem II 12 kDa e 92.9 0.18 6.3E-06 34.8 5.1 50 63-112 26-79 (97)
10 1ee8_A MUTM (FPG) protein; bet 92.6 0.13 4.5E-06 40.8 4.6 50 58-107 143-196 (266)
11 1k82_A Formamidopyrimidine-DNA 92.6 0.13 4.5E-06 40.8 4.6 50 58-107 150-203 (268)
12 2xzf_A Formamidopyrimidine-DNA 92.5 0.14 4.7E-06 40.7 4.6 50 58-107 153-206 (271)
13 3u6p_A Formamidopyrimidine-DNA 92.5 0.14 4.7E-06 40.8 4.6 51 57-107 154-208 (273)
14 1k3x_A Endonuclease VIII; hydr 92.4 0.15 5E-06 40.3 4.5 49 59-107 151-203 (262)
15 3w0f_A Endonuclease 8-like 3; 92.3 0.14 4.9E-06 41.6 4.5 50 58-107 174-227 (287)
16 1kft_A UVRC, excinuclease ABC 92.0 0.045 1.6E-06 35.3 1.0 34 51-84 12-45 (78)
17 3twl_A Formamidopyrimidine-DNA 92.0 0.17 5.8E-06 41.1 4.6 50 58-107 168-221 (310)
18 3vk8_A Probable formamidopyrim 91.9 0.17 5.7E-06 40.9 4.4 51 57-107 153-208 (295)
19 1s5l_U Photosystem II 12 kDa e 91.0 0.34 1.2E-05 35.6 4.9 50 62-111 62-115 (134)
20 1mu5_A Type II DNA topoisomera 90.9 0.17 5.9E-06 43.1 3.7 44 66-109 261-305 (471)
21 2a1j_B DNA excision repair pro 89.3 0.11 3.6E-06 34.5 0.9 24 61-84 30-53 (91)
22 2duy_A Competence protein come 86.3 0.46 1.6E-05 30.1 2.6 43 62-104 26-72 (75)
23 1z00_A DNA excision repair pro 85.9 0.33 1.1E-05 31.8 1.7 47 61-107 17-73 (89)
24 1x2i_A HEF helicase/nuclease; 84.3 0.45 1.5E-05 29.5 1.7 48 60-107 11-68 (75)
25 3fut_A Dimethyladenosine trans 84.2 0.41 1.4E-05 37.7 1.8 53 54-107 216-269 (271)
26 2nrt_A Uvrabc system protein C 79.3 1 3.5E-05 35.3 2.4 38 63-101 168-205 (220)
27 1z00_B DNA repair endonuclease 78.3 0.94 3.2E-05 30.3 1.7 38 63-101 18-55 (84)
28 1qyr_A KSGA, high level kasuga 77.8 0.9 3.1E-05 35.1 1.7 46 56-107 204-250 (252)
29 2edu_A Kinesin-like protein KI 77.0 3.1 0.00011 27.6 4.1 42 63-104 40-89 (98)
30 2ihm_A POL MU, DNA polymerase 72.8 2.4 8.1E-05 34.8 3.1 39 63-102 102-145 (360)
31 1ixr_A Holliday junction DNA h 72.7 1.5 5.1E-05 33.3 1.7 57 50-106 59-128 (191)
32 2gqf_A Hypothetical protein HI 70.2 2 6.9E-05 34.8 2.1 48 58-107 280-327 (401)
33 2ztd_A Holliday junction ATP-d 69.7 1.7 5.8E-05 33.6 1.5 30 51-80 76-105 (212)
34 2ztd_A Holliday junction ATP-d 69.6 1.9 6.6E-05 33.3 1.8 22 64-85 124-145 (212)
35 3fhg_A Mjogg, N-glycosylase/DN 69.4 2.3 7.8E-05 32.0 2.1 26 60-85 114-139 (207)
36 2zbk_B Type 2 DNA topoisomeras 69.3 7 0.00024 33.7 5.4 43 66-108 260-303 (530)
37 1cuk_A RUVA protein; DNA repai 68.8 2 6.8E-05 32.8 1.7 39 48-86 58-96 (203)
38 1vq8_Y 50S ribosomal protein L 68.8 1 3.5E-05 35.5 0.0 22 64-86 16-37 (241)
39 1jms_A Terminal deoxynucleotid 68.7 3 0.0001 34.6 2.8 39 63-102 121-165 (381)
40 3b0x_A DNA polymerase beta fam 65.8 2.1 7.2E-05 36.8 1.4 27 60-86 90-116 (575)
41 3uzu_A Ribosomal RNA small sub 63.7 0.78 2.7E-05 36.1 -1.6 48 54-107 226-274 (279)
42 2eo2_A Adult MALE hypothalamus 63.6 7 0.00024 25.8 3.3 24 80-103 37-60 (71)
43 2fmp_A DNA polymerase beta; nu 63.2 2.9 9.8E-05 34.0 1.6 38 63-101 98-140 (335)
44 1pu6_A 3-methyladenine DNA gly 63.1 2.6 8.9E-05 32.0 1.3 23 61-83 119-141 (218)
45 3ftd_A Dimethyladenosine trans 62.8 2.8 9.5E-05 32.1 1.4 43 55-107 203-246 (249)
46 1tdh_A NEI endonuclease VIII-l 62.4 0.97 3.3E-05 37.7 -1.3 39 58-96 158-200 (364)
47 1ixr_A Holliday junction DNA h 61.7 3.7 0.00013 31.0 1.9 21 64-84 108-128 (191)
48 2bgw_A XPF endonuclease; hydro 61.5 3.6 0.00012 30.7 1.8 23 62-84 161-183 (219)
49 1cuk_A RUVA protein; DNA repai 61.1 3.5 0.00012 31.4 1.7 20 64-83 109-128 (203)
50 2abk_A Endonuclease III; DNA-r 60.3 3 0.0001 31.3 1.2 22 61-82 107-128 (211)
51 3c65_A Uvrabc system protein C 60.0 1.9 6.4E-05 33.8 0.0 42 59-101 169-210 (226)
52 3exc_X Uncharacterized protein 59.5 4.7 0.00016 27.0 2.0 51 46-108 3-57 (91)
53 3v76_A Flavoprotein; structura 58.9 6 0.0002 32.3 2.9 48 58-107 299-346 (417)
54 4ecq_A DNA polymerase ETA; tra 58.7 7.2 0.00025 32.4 3.4 38 64-101 254-292 (435)
55 2w9m_A Polymerase X; SAXS, DNA 58.4 3 0.0001 36.0 1.1 25 61-86 95-119 (578)
56 3fhf_A Mjogg, N-glycosylase/DN 58.1 4.5 0.00015 31.0 1.9 26 61-86 122-148 (214)
57 2bcq_A DNA polymerase lambda; 57.7 3.9 0.00013 33.2 1.5 22 64-86 97-118 (335)
58 1kea_A Possible G-T mismatches 57.5 3.7 0.00013 31.1 1.3 21 62-82 114-134 (221)
59 2h56_A DNA-3-methyladenine gly 57.3 3.7 0.00013 31.4 1.3 27 60-86 135-162 (233)
60 1kg2_A A/G-specific adenine gl 57.3 3.8 0.00013 31.1 1.3 26 54-82 103-128 (225)
61 2w9m_A Polymerase X; SAXS, DNA 56.6 4 0.00014 35.2 1.5 54 64-117 132-191 (578)
62 1orn_A Endonuclease III; DNA r 56.5 4.1 0.00014 31.1 1.4 25 61-85 111-136 (226)
63 1mpg_A ALKA, 3-methyladenine D 56.4 4.1 0.00014 31.9 1.4 22 61-82 205-226 (282)
64 3n0u_A Probable N-glycosylase/ 55.8 3.9 0.00013 31.4 1.2 25 61-85 127-152 (219)
65 2i0x_A Hypothetical protein PF 55.6 6.5 0.00022 25.9 2.1 36 73-108 14-52 (85)
66 4b21_A Probable DNA-3-methylad 55.4 4.4 0.00015 31.2 1.4 23 60-82 147-169 (232)
67 3s6i_A DNA-3-methyladenine gly 54.4 4.7 0.00016 30.9 1.4 25 61-85 137-162 (228)
68 2yg9_A DNA-3-methyladenine gly 54.2 4.5 0.00015 30.9 1.3 23 60-82 143-165 (225)
69 2jhn_A ALKA, 3-methyladenine D 53.6 4.6 0.00016 31.9 1.3 24 61-84 208-232 (295)
70 4e9f_A Methyl-CPG-binding doma 53.4 6 0.0002 29.1 1.8 41 63-105 104-145 (161)
71 3i0w_A 8-oxoguanine-DNA-glycos 53.0 5 0.00017 31.8 1.4 27 60-86 208-235 (290)
72 3vdp_A Recombination protein R 51.5 14 0.00047 28.9 3.7 40 61-107 24-63 (212)
73 3tqs_A Ribosomal RNA small sub 51.1 2 6.7E-05 33.2 -1.2 44 56-105 210-254 (255)
74 2bcq_A DNA polymerase lambda; 48.5 8.4 0.00029 31.2 2.1 31 64-94 58-89 (335)
75 3q8k_A Flap endonuclease 1; he 47.9 9.8 0.00034 30.8 2.4 29 47-84 225-253 (341)
76 2i5h_A Hypothetical protein AF 47.8 8.7 0.0003 29.9 2.0 19 64-82 133-151 (205)
77 2xhi_A N-glycosylase/DNA lyase 46.5 7.2 0.00024 32.0 1.4 23 60-82 250-272 (360)
78 3fsp_A A/G-specific adenine gl 45.2 7.5 0.00026 31.4 1.3 23 61-83 116-138 (369)
79 4es1_A BH0342 protein; ferredo 44.4 9.8 0.00034 26.0 1.7 34 74-107 25-61 (100)
80 1jx4_A DNA polymerase IV (fami 44.2 19 0.00065 28.6 3.6 36 65-101 180-216 (352)
81 1vdd_A Recombination protein R 43.7 21 0.00071 28.2 3.6 41 60-107 9-49 (228)
82 2kp7_A Crossover junction endo 43.5 11 0.00037 25.1 1.7 20 65-84 60-79 (87)
83 1zq9_A Probable dimethyladenos 43.4 32 0.0011 26.3 4.7 35 75-109 247-281 (285)
84 1im4_A DBH; DNA polymerase PAL 43.1 14 0.00049 27.8 2.6 22 65-87 186-207 (221)
85 1zpw_X Hypothetical protein TT 43.0 11 0.00037 24.9 1.7 35 74-108 19-56 (90)
86 3b0x_A DNA polymerase beta fam 42.6 10 0.00034 32.6 1.8 43 65-107 130-172 (575)
87 1exn_A 5'-exonuclease, 5'-nucl 41.1 14 0.00047 29.7 2.3 18 67-84 207-224 (290)
88 4dez_A POL IV 1, DNA polymeras 40.6 17 0.00058 28.9 2.7 37 64-101 179-216 (356)
89 2ihm_A POL MU, DNA polymerase 39.4 6.2 0.00021 32.3 -0.0 21 64-84 62-82 (360)
90 3gru_A Dimethyladenosine trans 39.3 5.5 0.00019 31.6 -0.3 54 54-107 223-287 (295)
91 4gfj_A Topoisomerase V; helix- 38.2 13 0.00045 32.8 1.8 41 62-102 467-516 (685)
92 3bq0_A POL IV, DBH, DNA polyme 38.1 19 0.00064 28.7 2.6 36 65-101 181-217 (354)
93 1rxw_A Flap structure-specific 36.0 18 0.00062 28.8 2.2 18 67-84 239-256 (336)
94 3osn_A DNA polymerase IOTA; ho 35.8 17 0.00057 30.1 2.0 36 65-101 236-272 (420)
95 3n5n_X A/G-specific adenine DN 35.5 13 0.00043 29.8 1.2 21 62-82 127-148 (287)
96 3bqs_A Uncharacterized protein 34.8 25 0.00084 23.7 2.4 22 64-86 5-26 (93)
97 2d0s_A Cytochrome C, cytochrom 33.8 28 0.00096 20.8 2.4 17 91-107 61-77 (79)
98 3ory_A Flap endonuclease 1; hy 33.4 20 0.00068 29.3 2.1 18 67-84 255-272 (363)
99 1jms_A Terminal deoxynucleotid 33.4 8.6 0.00029 31.8 -0.1 22 64-85 81-102 (381)
100 1gks_A Cytochrome C551; haloph 33.2 27 0.00093 21.2 2.3 17 91-107 60-76 (78)
101 1qam_A ERMC' methyltransferase 32.9 24 0.00083 26.3 2.4 31 78-108 211-242 (244)
102 1kx2_A Mono-heme C-type cytoch 32.3 29 0.001 21.2 2.4 17 91-107 63-79 (81)
103 3ph2_B Cytochrome C6; photosyn 31.8 33 0.0011 20.5 2.5 17 91-107 64-80 (86)
104 2exv_A Cytochrome C-551; alpha 31.0 37 0.0013 20.2 2.6 16 92-107 65-80 (82)
105 2izo_A FEN1, flap structure-sp 30.8 23 0.00078 28.4 2.0 18 67-84 238-255 (346)
106 1cc5_A Cytochrome C5; electron 30.7 33 0.0011 21.3 2.4 15 92-106 67-81 (83)
107 1c75_A Cytochrome C-553; heme, 30.6 36 0.0012 20.0 2.5 17 91-107 53-69 (71)
108 1ayg_A Cytochrome C-552; elect 30.2 35 0.0012 20.5 2.4 16 92-107 63-78 (80)
109 3im1_A Protein SNU246, PRE-mRN 30.1 24 0.00083 27.8 2.0 43 64-107 158-212 (328)
110 3dmi_A Cytochrome C6; electron 30.0 36 0.0012 20.4 2.5 17 91-107 65-81 (88)
111 1a56_A C-551, ferricytochrome 29.7 29 0.00099 20.9 2.0 17 91-107 63-79 (81)
112 1dgs_A DNA ligase; AMP complex 29.5 19 0.00064 32.2 1.4 36 66-101 444-480 (667)
113 3dr0_A Cytochrome C6; photosyn 29.4 34 0.0012 20.6 2.3 17 91-107 70-86 (93)
114 3mfi_A DNA polymerase ETA; DNA 29.3 15 0.00053 31.4 0.8 24 63-86 307-330 (520)
115 1ls9_A Cytochrome C6; omega lo 29.2 38 0.0013 20.7 2.5 17 91-107 68-84 (91)
116 1uj2_A Uridine-cytidine kinase 29.2 66 0.0023 23.6 4.3 31 54-84 16-47 (252)
117 2zxy_A Cytochrome C552, cytoch 29.2 29 0.001 20.7 1.9 17 91-107 69-85 (87)
118 2ee7_A Sperm flagellar protein 29.2 44 0.0015 23.7 3.1 24 90-113 9-32 (127)
119 1a76_A Flap endonuclease-1 pro 29.1 27 0.00091 27.7 2.1 17 67-84 229-245 (326)
120 1c53_A Cytochrome C553; electr 29.1 31 0.0011 20.7 2.1 17 91-107 62-78 (79)
121 1c6r_A Cytochrome C6; electron 28.7 39 0.0013 20.4 2.5 17 91-107 66-82 (89)
122 2i0z_A NAD(FAD)-utilizing dehy 28.6 59 0.002 26.0 4.2 37 71-107 331-368 (447)
123 1gdv_A Cytochrome C6; RED ALGA 28.5 40 0.0014 20.0 2.5 17 91-107 63-79 (85)
124 1cno_A Cytochrome C552; electr 28.5 40 0.0014 20.5 2.5 18 91-108 65-82 (87)
125 1cyi_A Cytochrome C6, cytochro 28.2 40 0.0014 20.4 2.5 17 91-107 65-81 (90)
126 1nd9_A Translation initiation 28.0 23 0.00079 19.8 1.2 41 65-105 8-48 (49)
127 2hnh_A DNA polymerase III alph 27.9 55 0.0019 30.1 4.2 46 59-104 829-885 (910)
128 3cu4_A Cytochrome C family pro 27.9 41 0.0014 20.2 2.5 16 92-107 67-82 (85)
129 1f1f_A Cytochrome C6; heme, pr 27.4 43 0.0015 20.1 2.5 17 91-107 67-83 (89)
130 3oq2_A Crispr-associated prote 26.4 26 0.0009 23.7 1.4 34 74-107 28-64 (103)
131 2zzs_A Cytochrome C554; C-type 26.3 45 0.0016 20.8 2.5 17 91-107 85-101 (103)
132 2bgw_A XPF endonuclease; hydro 25.8 28 0.00096 25.7 1.6 21 64-84 195-215 (219)
133 3qe9_Y Exonuclease 1; exonucle 25.5 32 0.0011 27.9 2.0 19 66-84 228-246 (352)
134 2ivy_A Hypothetical protein SS 25.4 53 0.0018 22.0 2.9 36 73-108 17-56 (101)
135 1b43_A Protein (FEN-1); nuclea 25.0 27 0.00092 27.8 1.5 18 67-84 241-258 (340)
136 1wve_C 4-cresol dehydrogenase 25.0 50 0.0017 20.0 2.5 18 91-108 56-73 (80)
137 3dz1_A Dihydrodipicolinate syn 24.9 84 0.0029 24.7 4.4 44 70-113 259-308 (313)
138 3dp5_A OMCF, cytochrome C fami 24.9 48 0.0017 21.1 2.5 16 92-107 81-96 (99)
139 2h1r_A Dimethyladenosine trans 24.7 99 0.0034 23.7 4.7 33 76-108 260-292 (299)
140 1ul1_X Flap endonuclease-1; pr 24.6 34 0.0011 27.9 2.0 17 68-84 237-253 (379)
141 1t94_A Polymerase (DNA directe 24.6 39 0.0013 28.0 2.4 22 65-87 284-305 (459)
142 2fmp_A DNA polymerase beta; nu 24.5 31 0.001 27.8 1.7 21 64-84 58-78 (335)
143 2owo_A DNA ligase; protein-DNA 24.4 38 0.0013 30.2 2.5 36 66-101 449-485 (671)
144 1cch_A Cytochrome C551; electr 24.2 51 0.0018 19.5 2.4 16 92-107 65-80 (82)
145 2ce0_A Cytochrome C6; chloropl 23.5 50 0.0017 20.5 2.3 17 91-107 77-93 (105)
146 3f2b_A DNA-directed DNA polyme 22.8 64 0.0022 30.4 3.7 45 59-104 963-1015(1041)
147 3e1s_A Exodeoxyribonuclease V, 22.8 16 0.00054 31.4 -0.3 25 62-86 43-67 (574)
148 3h5d_A DHDPS, dihydrodipicolin 22.6 1.2E+02 0.0041 23.9 4.8 40 72-111 254-297 (311)
149 2zon_G Cytochrome C551; nitrit 22.5 58 0.002 19.6 2.4 16 92-107 69-84 (87)
150 3ivp_A Putative transposon-rel 22.5 1.3E+02 0.0046 19.5 4.5 37 71-107 52-108 (126)
151 1vht_A Dephospho-COA kinase; s 22.3 70 0.0024 22.6 3.1 28 59-86 3-30 (218)
152 1qf9_A UMP/CMP kinase, protein 22.0 87 0.003 21.0 3.5 27 60-86 6-33 (194)
153 1w2l_A Cytochrome oxidase subu 22.0 51 0.0018 20.1 2.1 17 91-107 81-97 (99)
154 1ci4_A Protein (barrier-TO-aut 20.7 63 0.0022 21.9 2.4 22 64-86 19-40 (89)
155 4f4y_A POL IV, DNA polymerase 20.6 71 0.0024 25.6 3.2 37 64-101 180-217 (362)
156 1uf9_A TT1252 protein; P-loop, 20.1 89 0.003 21.3 3.2 31 56-86 4-34 (203)
No 1
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.93 E-value=4.4e-29 Score=187.82 Aligned_cols=107 Identities=48% Similarity=0.830 Sum_probs=63.0
Q ss_pred ccccccccCcceeeeecCccCCcccccceecccccCCCCC--cceeeEEEecCccCCCCeEEEEeeccccccCHHHHHHH
Q 033150 2 VQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYP--GLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQI 79 (126)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~MvrIlgt~ip~nK~V~~ALt~IyGIG~~~A~~I 79 (126)
.|++|||++|.++-+|+-|. |-+++.+...+++|+ ++++||+||+|+|||++|+|.+|||+|||||+++|.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~m~RI~gvdlp~~K~v~~aLt~IyGIG~~~A~~I 78 (145)
T 3bbn_M 4 LSMVSVPIATSSLPLSARGR-----SSSVSFPAPKKGGIGHGGLQIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQI 78 (145)
T ss_dssp ------------------------------------------------CCCSSSCCCCSSBTTTGGGGSTTCCSSTTTGG
T ss_pred ccccccccccccchhhhcCC-----CCccccccCCchhhhcccchhheeeEeCcccCCCCEEEEeeeeecCccHHHHHHH
Confidence 58899999999999997544 456678888999999 99999999999999999999999999999999999999
Q ss_pred HHHhCCCccccCCCCHHHHHHHHHHHhhccccccchhhhccccc
Q 033150 80 LVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLVIIPYFFVR 123 (126)
Q Consensus 80 C~klGI~~~kv~~LteeQI~~L~~~I~~~~Ie~dLrR~i~~nI~ 123 (126)
|+++||++++++||||+|+++|+++ ||++++||+
T Consensus 79 ~~~~gI~~~rv~~Lte~ei~~l~~~----------Rr~v~~nIk 112 (145)
T 3bbn_M 79 LLDLNFDNKVTKDLSEEEVIILRKE----------KRFNRVAIE 112 (145)
T ss_dssp GTTTTCCSCBTTSCCSSTTHHHHSS----------CCCCSTTTH
T ss_pred HHHcCCCceEcCCCCHHHHHHHHHH----------HHHHHHHHH
Confidence 9999999889999999999999976 788888886
No 2
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=99.92 E-value=3.3e-26 Score=173.69 Aligned_cols=81 Identities=21% Similarity=0.196 Sum_probs=78.7
Q ss_pred CCCcceeeEEEecCccCCCCeEEEEeeccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh----------
Q 033150 39 QYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK---------- 107 (126)
Q Consensus 39 ~~~~~~~~MvrIlgt~ip~nK~V~~ALt~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~---------- 107 (126)
.|+ ||+||+|||||++|+|.+|||+|||||+++|.+||+++||| ++++++||++|+++|+++|++
T Consensus 10 ~f~----~m~RI~g~~l~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p~~~~iP~w~ 85 (155)
T 2xzm_M 10 DFK----YIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADPEAHGIPTWL 85 (155)
T ss_dssp SSC----SCCEETTTEECCSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSHHHHCCCGGG
T ss_pred hhh----hhHheeCccCCCCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCccccCCCHHH
Confidence 677 99999999999999999999999999999999999999999 999999999999999999987
Q ss_pred -------------ccccccchhhhccccc
Q 033150 108 -------------YMIEGDLVIIPYFFVR 123 (126)
Q Consensus 108 -------------~~Ie~dLrR~i~~nI~ 123 (126)
|.||+||++++++||+
T Consensus 86 lNr~kD~~~G~~~~~ie~dLr~~~~~dI~ 114 (155)
T 2xzm_M 86 LNRINDFKDGKNYQMASNTLDTKMREDLE 114 (155)
T ss_dssp CSEEEETTTEEEECCCHHHHHHHHHHHHH
T ss_pred hhcccccCCCceeEEecHHHHHHHHHhHH
Confidence 7999999999999996
No 3
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=99.92 E-value=5.1e-26 Score=171.21 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=77.6
Q ss_pred CCCcceeeEEEecCccCCCCeEEEEeeccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh---ccc----
Q 033150 39 QYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK---YMI---- 110 (126)
Q Consensus 39 ~~~~~~~~MvrIlgt~ip~nK~V~~ALt~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~---~~I---- 110 (126)
.|+ ||+||+|||||++|+|.+|||+|||||+++|.+||+++||| ++++++||++|+++|+++|++ |.|
T Consensus 10 ~~~----~~~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~iP~w~ 85 (146)
T 3u5c_S 10 SFQ----HILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWF 85 (146)
T ss_dssp CCC----SSBCCTTSCBCSSSCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTCCSTT
T ss_pred Hhh----hhhhhcCccCCCCcchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCccHHH
Confidence 577 99999999999999999999999999999999999999999 999999999999999999985 554
Q ss_pred ----------------cccchhhhcccccc
Q 033150 111 ----------------EGDLVIIPYFFVRG 124 (126)
Q Consensus 111 ----------------e~dLrR~i~~nI~~ 124 (126)
|+||++++++||+.
T Consensus 86 lNR~kD~~~G~~~~lie~dL~~~~~~dI~R 115 (146)
T 3u5c_S 86 LNRQNDITDGKDYHTLANNVESKLRDDLER 115 (146)
T ss_dssp CTBCSCSSSCCCBCCCTHHHHHHHHHHHHH
T ss_pred hhhhhcccccchheeehHHHHHHHHHhhHH
Confidence 99999999999973
No 4
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=99.91 E-value=1.2e-26 Score=171.03 Aligned_cols=77 Identities=35% Similarity=0.637 Sum_probs=74.7
Q ss_pred EEEecCccCCCCeEEEEeeccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh-ccccccchhhhccccc
Q 033150 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK-YMIEGDLVIIPYFFVR 123 (126)
Q Consensus 47 MvrIlgt~ip~nK~V~~ALt~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~-~~Ie~dLrR~i~~nI~ 123 (126)
|+||+|+|||++|+|.+|||+|||||+++|.+||+++||| +++++|||++|+++|+++|++ |.+|+||++++++||+
T Consensus 1 m~rI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~~~~ve~dLrr~~~~nIk 79 (126)
T 2vqe_M 1 MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIK 79 (126)
T ss_dssp -CCCSTTCCCCSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred CceEeCccCCCCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHHhCcchhHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999999999999999996 9999999999999996
No 5
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.91 E-value=5.7e-26 Score=171.90 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=81.0
Q ss_pred ccccCCCCCcceeeEEEecCccCCCCeEEEEeeccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh---c
Q 033150 33 PVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK---Y 108 (126)
Q Consensus 33 ~~~~~~~~~~~~~~MvrIlgt~ip~nK~V~~ALt~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~---~ 108 (126)
|+..+..|+ ||+||+|||||++|+|.+|||+|||||+++|.+||+++||| ++++++||++|+++|+++|++ |
T Consensus 2 ~~~~~~~~~----~m~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~ 77 (152)
T 3iz6_M 2 SLIAGEEFQ----HILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQF 77 (152)
T ss_dssp CCCTTCSCC----CCCCTTTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSC
T ss_pred CcccHHHHH----HHHHHcCCcCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhccc
Confidence 455677888 99999999999999999999999999999999999999999 999999999999999999975 6
Q ss_pred cc--------------------cccchhhhccccc
Q 033150 109 MI--------------------EGDLVIIPYFFVR 123 (126)
Q Consensus 109 ~I--------------------e~dLrR~i~~nI~ 123 (126)
.| |+||++++++||+
T Consensus 78 ~ip~w~lNr~kD~~~G~~~~li~~dL~~~~~~dI~ 112 (152)
T 3iz6_M 78 KVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLE 112 (152)
T ss_dssp CCCCCSCSCCCSCCCCSCCTTCTHHHHHHHHHHHH
T ss_pred CcchhhhhhhcccCCcceeeechhHHHHHHHHhHH
Confidence 55 5999999999996
No 6
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=99.91 E-value=8.1e-26 Score=164.04 Aligned_cols=76 Identities=36% Similarity=0.600 Sum_probs=74.2
Q ss_pred EEecCccCCCCeEEEEeeccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhhccccccchhhhccccc
Q 033150 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDLVIIPYFFVR 123 (126)
Q Consensus 48 vrIlgt~ip~nK~V~~ALt~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~~~Ie~dLrR~i~~nI~ 123 (126)
+||+|||||++|+|.+|||+|||||+++|.+||+++||| ++++++||++|+++|+++|++|.||+||++++++||+
T Consensus 1 ~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~~~ie~dLr~~~~~dI~ 77 (114)
T 3r8n_M 1 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIK 77 (114)
T ss_dssp CCTTSSCCCCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHHSSSCTTHHHHHHHHHHHH
T ss_pred CeeCCccCCCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999 9999999999999999999889999999999999996
No 7
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.91 E-value=9.2e-26 Score=170.14 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=75.7
Q ss_pred eEEEecCccCCCCeEEEEeeccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh---c-------------
Q 033150 46 QCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK---Y------------- 108 (126)
Q Consensus 46 ~MvrIlgt~ip~nK~V~~ALt~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~---~------------- 108 (126)
||+||+|||||++|+|.+|||+|||||+++|.+||+++||| ++++++||++|+++|+++|++ |
T Consensus 6 ~m~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~~~~~~iP~w~lNr~kD~ 85 (148)
T 3j20_O 6 HIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDY 85 (148)
T ss_dssp SCEECSSSCEECSSCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHCHHHHCCCTTTSSEEEET
T ss_pred HhHHHcCccCCCCCEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhcccccCCChhhhcccCCC
Confidence 99999999999999999999999999999999999999999 999999999999999999976 3
Q ss_pred -------cccccchhhhccccc
Q 033150 109 -------MIEGDLVIIPYFFVR 123 (126)
Q Consensus 109 -------~Ie~dLrR~i~~nI~ 123 (126)
.+|+||++++++||+
T Consensus 86 ~~G~~~~~ve~dL~~~~~~dI~ 107 (148)
T 3j20_O 86 ETGRDLHLITAKLDMAIREDIM 107 (148)
T ss_dssp TTEEEECCCHHHHHHHHHHHHH
T ss_pred CCCceeEEechHHHHHHHHHHH
Confidence 799999999999996
No 8
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=93.36 E-value=0.042 Score=34.76 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=30.9
Q ss_pred eeccccccCHHHHHHHHHHhCCCccccCCCCHHHHHHH
Q 033150 64 SLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITI 101 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klGI~~~kv~~LteeQI~~L 101 (126)
.|..|.|||+.....+++.+| +-..+.+.|.+|+.++
T Consensus 5 ~L~~IpGIG~kr~~~LL~~Fg-s~~~i~~As~eeL~~v 41 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMHHVK-NIAELAALSQDELTSI 41 (63)
T ss_dssp HHHTSTTCCHHHHHHHHHHCS-SHHHHHTCCHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHcC-CHHHHHHCCHHHHHHH
Confidence 478999999999999999887 4445677888888777
No 9
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=92.92 E-value=0.18 Score=34.77 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=41.0
Q ss_pred EeeccccccCHHHHHHHHHHhCCCc----cccCCCCHHHHHHHHHHHhhccccc
Q 033150 63 YSLQYIHGVGRTRARQILVDLKMEN----KITKDMSEEELITIRDEVSKYMIEG 112 (126)
Q Consensus 63 ~ALt~IyGIG~~~A~~IC~klGI~~----~kv~~LteeQI~~L~~~I~~~~Ie~ 112 (126)
-.|+++.|||+.+|..|.+.=++.+ .++.-+.+..+++|..+++.+.+..
T Consensus 26 ~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V~Gig~~~~e~l~~~l~~f~v~~ 79 (97)
T 3arc_U 26 AAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTE 79 (97)
T ss_dssp GGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGCTTCCHHHHHHHHHTGGGEECCC
T ss_pred HHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhccCCCHHHHHHHHHHhceeEecC
Confidence 4689999999999999999544541 2478899999999999999876643
No 10
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=92.60 E-value=0.13 Score=40.80 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=42.9
Q ss_pred CeEEEEee---ccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh
Q 033150 58 NKRIEYSL---QYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 58 nK~V~~AL---t~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~ 107 (126)
+++|.-+| +-|-|||--.|.++|-.+||| ..+.++||++|++.|-+.+.+
T Consensus 143 ~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 196 (266)
T 1ee8_A 143 ARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALRE 196 (266)
T ss_dssp CSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHH
T ss_pred CccHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 45666666 567899999999999999999 888999999999999777654
No 11
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=92.57 E-value=0.13 Score=40.77 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=42.9
Q ss_pred CeEEEEee---ccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh
Q 033150 58 NKRIEYSL---QYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 58 nK~V~~AL---t~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~ 107 (126)
+++|.-+| +-|-|||--.|.++|-.+||+ ..+.++||++|++.|-+.+.+
T Consensus 150 ~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 203 (268)
T 1k82_A 150 KTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKA 203 (268)
T ss_dssp CSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 45666666 567899999999999999999 888999999999999777654
No 12
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=92.49 E-value=0.14 Score=40.67 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=42.8
Q ss_pred CeEEEEee---ccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh
Q 033150 58 NKRIEYSL---QYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 58 nK~V~~AL---t~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~ 107 (126)
+++|.-+| +-|-|||--.|.++|-.+||| ..+.++||++|++.|-+.+.+
T Consensus 153 ~~~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 206 (271)
T 2xzf_A 153 TKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIE 206 (271)
T ss_dssp CSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred CccHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 45666666 567899999999999999999 888999999999999777654
No 13
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=92.48 E-value=0.14 Score=40.82 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=43.9
Q ss_pred CCeEEEEee---ccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh
Q 033150 57 NNKRIEYSL---QYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 57 ~nK~V~~AL---t~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~ 107 (126)
.+++|.-+| +-|-|||--.|.+||-.+||| ..+.++||++|++.|-+.+.+
T Consensus 154 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 208 (273)
T 3u6p_A 154 TKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVA 208 (273)
T ss_dssp CCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CcchHHHHHhcCCccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 355666667 568899999999999999999 888999999999999777754
No 14
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=92.37 E-value=0.15 Score=40.35 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=42.3
Q ss_pred eEEEEee---ccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh
Q 033150 59 KRIEYSL---QYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 59 K~V~~AL---t~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~ 107 (126)
++|..+| +-+-|||--.|.++|-.+||| ..+.++||++|+..|-+.+..
T Consensus 151 ~~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 203 (262)
T 1k3x_A 151 RQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLE 203 (262)
T ss_dssp SCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 5677777 345899999999999999999 888999999999999777654
No 15
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=92.33 E-value=0.14 Score=41.55 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=44.0
Q ss_pred CeEEEEee---ccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh
Q 033150 58 NKRIEYSL---QYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 58 nK~V~~AL---t~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~ 107 (126)
+.+|..+| +-|-|||.-.+.++|-..||+ ..++++||++|+++|-+.+.+
T Consensus 174 ~~~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~~Ls~~~~~~L~~ai~~ 227 (287)
T 3w0f_A 174 DRMLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVCQLSDKQACHLVKMTRD 227 (287)
T ss_dssp SSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGGGSCHHHHHHHHHHHHH
T ss_pred cccHHHHHhcCCccccccHHHHHHHHHHccCCccCccccCCHHHHHHHHHHHHH
Confidence 34567777 668899999999999999999 888999999999999888865
No 16
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=92.01 E-value=0.045 Score=35.27 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=21.9
Q ss_pred cCccCCCCeEEEEeeccccccCHHHHHHHHHHhC
Q 033150 51 GGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK 84 (126)
Q Consensus 51 lgt~ip~nK~V~~ALt~IyGIG~~~A~~IC~klG 84 (126)
.|.-+..++.....|..|.|||+.+|..|++.+|
T Consensus 12 ~~~~~~~~~~~~~~L~~I~gIG~~~A~~Ll~~fg 45 (78)
T 1kft_A 12 SGLVPRGSHMNTSSLETIEGVGPKRRQMLLKYMG 45 (78)
T ss_dssp -----------CCGGGGCTTCSSSHHHHHHHHHS
T ss_pred hhHHHhHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 3455667777888999999999999999999986
No 17
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=92.01 E-value=0.17 Score=41.13 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=42.1
Q ss_pred CeEEEEee---ccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh
Q 033150 58 NKRIEYSL---QYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 58 nK~V~~AL---t~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~ 107 (126)
+.+|..+| +-|-|||--.|.+||-++||+ ..+.++||++|++.|-+.+.+
T Consensus 168 ~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~~ 221 (310)
T 3twl_A 168 KITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKE 221 (310)
T ss_dssp CSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred cchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 45566666 447899999999999999999 889999999999998766644
No 18
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=91.87 E-value=0.17 Score=40.87 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=43.6
Q ss_pred CCeEEEEee---cc-ccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh
Q 033150 57 NNKRIEYSL---QY-IHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 57 ~nK~V~~AL---t~-IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~ 107 (126)
.+.+|.-+| +- |-|||--.|.+||-.+||+ ..++++||++|++.|-+.+.+
T Consensus 153 ~~~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~~ 208 (295)
T 3vk8_A 153 YKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKY 208 (295)
T ss_dssp CCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred cCchHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 455666667 34 8999999999999999999 888999999999999777754
No 19
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=90.95 E-value=0.34 Score=35.63 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=40.2
Q ss_pred EEeeccccccCHHHHHHHHHHhCCC---c-cccCCCCHHHHHHHHHHHhhcccc
Q 033150 62 EYSLQYIHGVGRTRARQILVDLKME---N-KITKDMSEEELITIRDEVSKYMIE 111 (126)
Q Consensus 62 ~~ALt~IyGIG~~~A~~IC~klGI~---~-~kv~~LteeQI~~L~~~I~~~~Ie 111 (126)
...|+++.|||+++|.+|.+.-.+. + ..++.+++.+.+.|.+..+++.+.
T Consensus 62 ~~eL~~LpGiGp~~A~~II~~GpF~svedL~~V~GIg~k~~e~l~~~~~~~tv~ 115 (134)
T 1s5l_U 62 IAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVT 115 (134)
T ss_dssp GGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGCTTCCHHHHHHHHHHHTTEECC
T ss_pred HHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhCCCCCHHHHHHHHHhhcceeec
Confidence 4578999999999999999654444 1 347899999999999999886553
No 20
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=90.94 E-value=0.17 Score=43.09 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=39.8
Q ss_pred ccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhhcc
Q 033150 66 QYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYM 109 (126)
Q Consensus 66 t~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~~~ 109 (126)
..+-+||..+|.+||+.+|++ ..+.++|+.+|+.+|.+.+.++.
T Consensus 261 ~~f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 305 (471)
T 1mu5_A 261 NEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKYE 305 (471)
T ss_dssp TSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHCC
T ss_pred ccccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHhcc
Confidence 447799999999999999999 88889999999999999998753
No 21
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=89.34 E-value=0.11 Score=34.47 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.7
Q ss_pred EEEeeccccccCHHHHHHHHHHhC
Q 033150 61 IEYSLQYIHGVGRTRARQILVDLK 84 (126)
Q Consensus 61 V~~ALt~IyGIG~~~A~~IC~klG 84 (126)
+..+|+.|.|||+.+|..|++.+|
T Consensus 30 ~~~~L~~IpgIG~~~A~~Ll~~fg 53 (91)
T 2a1j_B 30 VTECLTTVKSVNKTDSQTLLTTFG 53 (91)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCCHHHHHHHHHHCC
Confidence 456899999999999999999987
No 22
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=86.35 E-value=0.46 Score=30.13 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=31.6
Q ss_pred EEeeccccccCHHHHHHHHHHhCCC-cc---ccCCCCHHHHHHHHHH
Q 033150 62 EYSLQYIHGVGRTRARQILVDLKME-NK---ITKDMSEEELITIRDE 104 (126)
Q Consensus 62 ~~ALt~IyGIG~~~A~~IC~klGI~-~~---kv~~LteeQI~~L~~~ 104 (126)
...|..+.|||+.+|..|.+...+. -. .+.-+.+...++|..+
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRPY 72 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGGSTTCCHHHHHHHGGG
T ss_pred HHHHHhCCCCCHHHHHHHHHHcccCCHHHHHhCCCCCHHHHHHHHHh
Confidence 3458999999999999999987655 11 2466777777766544
No 23
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=85.89 E-value=0.33 Score=31.78 Aligned_cols=47 Identities=11% Similarity=0.241 Sum_probs=33.1
Q ss_pred EEEeeccccccCHHHHHHHHHHhCC-------C-c--cccCCCCHHHHHHHHHHHhh
Q 033150 61 IEYSLQYIHGVGRTRARQILVDLKM-------E-N--KITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 61 V~~ALt~IyGIG~~~A~~IC~klGI-------~-~--~kv~~LteeQI~~L~~~I~~ 107 (126)
+..+|+.|.|||+.+|..|++.+|= + . ..+..+.+....+|...+++
T Consensus 17 ~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999861 1 0 12344566666666666654
No 24
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=84.33 E-value=0.45 Score=29.48 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=34.2
Q ss_pred EEEEeeccccccCHHHHHHHHHHhCC-Cc---------cccCCCCHHHHHHHHHHHhh
Q 033150 60 RIEYSLQYIHGVGRTRARQILVDLKM-EN---------KITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 60 ~V~~ALt~IyGIG~~~A~~IC~klGI-~~---------~kv~~LteeQI~~L~~~I~~ 107 (126)
.....|+.|.|||+.+|..|++.+|= .. ..+..+.+....+|...+++
T Consensus 11 ~~~~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 11 RQRLIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 34567899999999999999998862 11 22445666666777776654
No 25
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=84.21 E-value=0.41 Score=37.70 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=43.8
Q ss_pred cCCCCeEEEEeeccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh
Q 033150 54 EIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 54 ~ip~nK~V~~ALt~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~ 107 (126)
.--.+|++..+|... |.++.....+++.+||+ +.+..+||-+|..+|.+.+++
T Consensus 216 F~~rrKtL~n~L~~~-~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 269 (271)
T 3fut_A 216 FGKRRKTLLNALAAA-GYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLEG 269 (271)
T ss_dssp TSSTTSCHHHHHHHT-TCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC-
T ss_pred HhcCCcHHHHHHHhh-cCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHHh
Confidence 444578888888664 55788888999999999 899999999999999988753
No 26
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=79.26 E-value=1 Score=35.27 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=29.6
Q ss_pred EeeccccccCHHHHHHHHHHhCCCccccCCCCHHHHHHH
Q 033150 63 YSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITI 101 (126)
Q Consensus 63 ~ALt~IyGIG~~~A~~IC~klGI~~~kv~~LteeQI~~L 101 (126)
..|..|.|||+.+|+.+++.+| +-..+.+-+.+|+.++
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~Fg-Sl~~i~~As~EeL~~V 205 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFG-SLENIRSASLEEIARV 205 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHC-SHHHHHTSCHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHcC-CHHHHHhCCHHHHHHH
Confidence 4678899999999999999988 4233556677777665
No 27
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=78.34 E-value=0.94 Score=30.26 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=29.3
Q ss_pred EeeccccccCHHHHHHHHHHhCCCccccCCCCHHHHHHH
Q 033150 63 YSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITI 101 (126)
Q Consensus 63 ~ALt~IyGIG~~~A~~IC~klGI~~~kv~~LteeQI~~L 101 (126)
..|..|.|||+.....+++.+|= -..+.+.|.+||..+
T Consensus 18 s~L~~IpGIG~kr~~~LL~~FgS-l~~i~~AS~eEL~~v 55 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMHHVKN-IAELAALSQDELTSI 55 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHHHSSC-HHHHHHSCHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHcCC-HHHHHHCCHHHHHHH
Confidence 45889999999999999987762 333566677777766
No 28
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=77.76 E-value=0.9 Score=35.07 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=38.0
Q ss_pred CCCeEEEEeeccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh
Q 033150 56 PNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 56 p~nK~V~~ALt~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~ 107 (126)
-.+|.+..+|..+++ ..+++.+||+ +.+..+||-+|..+|.+.+++
T Consensus 204 ~rrK~l~n~l~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~~ 250 (252)
T 1qyr_A 204 QRRKTIRNSLGNLFS------VEVLTGMGIDPAMRAENISVAQYCQMANYLAE 250 (252)
T ss_dssp TTTSBHHHHTTTTCC------HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHhhhhh------HHHHHHcCCCCCCChHHCCHHHHHHHHHHHHh
Confidence 357778888876654 5678899999 999999999999999988753
No 29
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=77.00 E-value=3.1 Score=27.62 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=30.4
Q ss_pred EeeccccccCHHHHHHHHHHh---C-CC----ccccCCCCHHHHHHHHHH
Q 033150 63 YSLQYIHGVGRTRARQILVDL---K-ME----NKITKDMSEEELITIRDE 104 (126)
Q Consensus 63 ~ALt~IyGIG~~~A~~IC~kl---G-I~----~~kv~~LteeQI~~L~~~ 104 (126)
-.|+.|.|||+.+|..|++.. | +. -.++.-+++..+++|.+.
T Consensus 40 ~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v~Gig~k~~~~l~~~ 89 (98)
T 2edu_A 40 RDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLKA 89 (98)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhCCCCCHHHHHHHHHC
Confidence 358999999999999999876 2 22 123556777777777543
No 30
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=72.84 E-value=2.4 Score=34.84 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=29.4
Q ss_pred EeeccccccCHHHHHHHHHHhCCCc---cc--cCCCCHHHHHHHH
Q 033150 63 YSLQYIHGVGRTRARQILVDLKMEN---KI--TKDMSEEELITIR 102 (126)
Q Consensus 63 ~ALt~IyGIG~~~A~~IC~klGI~~---~k--v~~LteeQI~~L~ 102 (126)
..|++|+|||+++|.++-++ ||.+ .+ -+.|++.|..-|.
T Consensus 102 ~~l~~I~GvG~kta~~l~~~-Gi~tledL~~~~~~L~~~~~~Gl~ 145 (360)
T 2ihm_A 102 KLFTQVFGVGVKTANRWYQE-GLRTLDELREQPQRLTQQQKAGLQ 145 (360)
T ss_dssp HHHHTSTTCCHHHHHHHHHT-TCCSHHHHHTCCTTCCHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHc-CCCCHHHHHhcccchHHHHHHHHH
Confidence 45789999999999999888 9982 22 3577776665553
No 31
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=72.72 E-value=1.5 Score=33.25 Aligned_cols=57 Identities=19% Similarity=0.116 Sum_probs=39.5
Q ss_pred ecCccCCCCeEEEEeeccccccCHHHHHHHHHHhCCC--c-----------cccCCCCHHHHHHHHHHHh
Q 033150 50 VGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME--N-----------KITKDMSEEELITIRDEVS 106 (126)
Q Consensus 50 Ilgt~ip~nK~V~~ALt~IyGIG~~~A~~IC~klGI~--~-----------~kv~~LteeQI~~L~~~I~ 106 (126)
+.|-.-...|.++.-|.+|.|||+++|..|++.+|-+ . .++.-+.+.-.++|...+.
T Consensus 59 l~gf~~~~ek~~f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 59 LYGFPDEENLALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp EEEESSHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred hhccCCHHHHHHHHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4444444566666679999999999999999999984 1 2344455555666665554
No 32
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=70.24 E-value=2 Score=34.76 Aligned_cols=48 Identities=6% Similarity=0.129 Sum_probs=39.5
Q ss_pred CeEEEEeeccccccCHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHhh
Q 033150 58 NKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 58 nK~V~~ALt~IyGIG~~~A~~IC~klGI~~~kv~~LteeQI~~L~~~I~~ 107 (126)
+|.+...|... +.++.+..+++..|++.+++.+++++|..+|.+.|.+
T Consensus 280 ~~~~~~~l~~~--lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 327 (401)
T 2gqf_A 280 KQMLKTILVRL--LPKKLVELWIEQGIVQDEVIANISKVRVKNLVDFIHH 327 (401)
T ss_dssp TSBHHHHHTTT--SCHHHHHHHHHTTSSCCCBGGGCCHHHHHHHHHHHHC
T ss_pred cccHHHHhhhh--cCHHHHHHHHHHcCCCCCchhhCCHHHHHHHHHHHhc
Confidence 44455555553 6789999999999999777899999999999999987
No 33
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=69.72 E-value=1.7 Score=33.63 Aligned_cols=30 Identities=23% Similarity=0.239 Sum_probs=13.8
Q ss_pred cCccCCCCeEEEEeeccccccCHHHHHHHH
Q 033150 51 GGVEIPNNKRIEYSLQYIHGVGRTRARQIL 80 (126)
Q Consensus 51 lgt~ip~nK~V~~ALt~IyGIG~~~A~~IC 80 (126)
.|..-...+.++.-|.++.|||+++|..|+
T Consensus 76 yGF~~~~Er~lf~~L~sv~GIGpk~A~~Il 105 (212)
T 2ztd_A 76 YGFPDGETRDLFLTLLSVSGVGPRLAMAAL 105 (212)
T ss_dssp EEESSHHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred EecCcHHHHHHHHHhcCcCCcCHHHHHHHH
Confidence 333333444444444445555555554444
No 34
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=69.60 E-value=1.9 Score=33.29 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=17.9
Q ss_pred eeccccccCHHHHHHHHHHhCC
Q 033150 64 SLQYIHGVGRTRARQILVDLKM 85 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klGI 85 (126)
.|+++.|||+++|.+|+..+.=
T Consensus 124 ~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 124 ALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HHHTSTTCCHHHHHHHHHHHTT
T ss_pred HHhhCCCCCHHHHHHHHHHHHH
Confidence 0578999999999999977753
No 35
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=69.37 E-value=2.3 Score=32.05 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=21.6
Q ss_pred EEEEeeccccccCHHHHHHHHHHhCC
Q 033150 60 RIEYSLQYIHGVGRTRARQILVDLKM 85 (126)
Q Consensus 60 ~V~~ALt~IyGIG~~~A~~IC~klGI 85 (126)
...-.|.+++|||+.+|..||.-+|.
T Consensus 114 ~~~~~L~~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 114 LARERLLNIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 35678999999999999999976554
No 36
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=69.26 E-value=7 Score=33.75 Aligned_cols=43 Identities=28% Similarity=0.397 Sum_probs=37.6
Q ss_pred ccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhhc
Q 033150 66 QYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKY 108 (126)
Q Consensus 66 t~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~~ 108 (126)
...-++|.+.|..+|+.+|++ ..+.++|+.+|+..+-..+.++
T Consensus 260 ~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~~ 303 (530)
T 2zbk_B 260 NEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKD 303 (530)
T ss_dssp TTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHHC
T ss_pred CccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHhc
Confidence 446789999999999999999 6668999999999998888654
No 37
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=68.80 E-value=2 Score=32.83 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=31.8
Q ss_pred EEecCccCCCCeEEEEeeccccccCHHHHHHHHHHhCCC
Q 033150 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME 86 (126)
Q Consensus 48 vrIlgt~ip~nK~V~~ALt~IyGIG~~~A~~IC~klGI~ 86 (126)
.++.|-.-...|.++.-|.+|.|||+++|..|++.+|-+
T Consensus 58 ~~l~gf~~~~ek~~f~~L~~V~GIGpk~A~~iL~~f~~~ 96 (203)
T 1cuk_A 58 QLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQ 96 (203)
T ss_dssp EEEEEESSHHHHHHHHHHHHSSSCCHHHHHHHHHHSCHH
T ss_pred hhhhccCCHHHHHHHHHHhcCCCcCHHHHHHHHhhCChH
Confidence 446666556667677789999999999999999999985
No 38
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=68.79 E-value=1 Score=35.47 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=0.0
Q ss_pred eeccccccCHHHHHHHHHHhCCC
Q 033150 64 SLQYIHGVGRTRARQILVDLKME 86 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klGI~ 86 (126)
.|..|.|||+.+|..|.+. |+.
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~-gf~ 37 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREA-GFE 37 (241)
T ss_dssp -----------------------
T ss_pred HHhcCCCCCHHHHHHHHHc-CCC
Confidence 4566666666666666666 555
No 39
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=68.67 E-value=3 Score=34.60 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=28.3
Q ss_pred EeeccccccCHHHHHHHHHHhCCC--cccc----CCCCHHHHHHHH
Q 033150 63 YSLQYIHGVGRTRARQILVDLKME--NKIT----KDMSEEELITIR 102 (126)
Q Consensus 63 ~ALt~IyGIG~~~A~~IC~klGI~--~~kv----~~LteeQI~~L~ 102 (126)
..|++|+|||+++|.++-++ ||. .... ..|++.|..-|.
T Consensus 121 ~~l~~I~GvGpk~a~~ly~~-Gi~tledL~~~~g~kl~~~q~~Gl~ 165 (381)
T 1jms_A 121 KLFTSVFGVGLKTAEKWFRM-GFRTLSKIQSDKSLRFTQMQKAGFL 165 (381)
T ss_dssp HHHHTSTTCCHHHHHHHHHT-TCCSHHHHHHCSSCCCCHHHHHHHH
T ss_pred HHHHccCCCCHHHHHHHHHc-CCCcHHHHHhCcccchHHHHHHHHH
Confidence 35689999999999999888 998 2222 257766655553
No 40
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=65.76 E-value=2.1 Score=36.83 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.2
Q ss_pred EEEEeeccccccCHHHHHHHHHHhCCC
Q 033150 60 RIEYSLQYIHGVGRTRARQILVDLKME 86 (126)
Q Consensus 60 ~V~~ALt~IyGIG~~~A~~IC~klGI~ 86 (126)
....-|.+|+|||+++|..|.+.+|+.
T Consensus 90 ~~~~~l~~v~GvGpk~A~~~~~~lg~~ 116 (575)
T 3b0x_A 90 RGVLEVMEVPGVGPKTARLLYEGLGID 116 (575)
T ss_dssp HHHHHHHTSTTTCHHHHHHHHHTSCCC
T ss_pred HHHHHHhcCCCcCHHHHHHHHHhcCCC
Confidence 345668999999999999999998876
No 41
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=63.66 E-value=0.78 Score=36.08 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=38.1
Q ss_pred cCCCCeEEEEeeccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh
Q 033150 54 EIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 54 ~ip~nK~V~~ALt~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~ 107 (126)
.--.+|++..+|...++ ..+++.+||+ +.+..+||.+|+.+|.+.++.
T Consensus 226 F~~rrK~l~n~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 274 (279)
T 3uzu_A 226 FSQRRKMLRNTLGGYRD------LVDFDALGFDLARRAEDIGVDEYVRVAQAVAS 274 (279)
T ss_dssp GGGTTSBHHHHTGGGTT------TCCTTTTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HhccChHHHHHHHhhcC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHHHH
Confidence 33456777788877654 3467889999 999999999999999998864
No 42
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=63.59 E-value=7 Score=25.82 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=19.5
Q ss_pred HHHhCCCccccCCCCHHHHHHHHH
Q 033150 80 LVDLKMENKITKDMSEEELITIRD 103 (126)
Q Consensus 80 C~klGI~~~kv~~LteeQI~~L~~ 103 (126)
+++|||+..--.+||+||+.+...
T Consensus 37 L~kLGI~ktdP~~LT~eEi~~FaR 60 (71)
T 2eo2_A 37 LKKLGIHKTDPSTLTEEEVRKFAR 60 (71)
T ss_dssp HHHHTCCCCSTTTCCHHHHHHHHH
T ss_pred HHHcCCCCCCcccCCHHHHhhcee
Confidence 478899977789999999887654
No 43
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=63.17 E-value=2.9 Score=33.98 Aligned_cols=38 Identities=16% Similarity=0.354 Sum_probs=28.1
Q ss_pred EeeccccccCHHHHHHHHHHhCCCc--c-c--cCCCCHHHHHHH
Q 033150 63 YSLQYIHGVGRTRARQILVDLKMEN--K-I--TKDMSEEELITI 101 (126)
Q Consensus 63 ~ALt~IyGIG~~~A~~IC~klGI~~--~-k--v~~LteeQI~~L 101 (126)
..|++|+|||+++|.++-++ ||.+ . + -+.|+..|..-|
T Consensus 98 ~~l~~V~GiGpk~a~~l~~~-Gi~tledL~~a~~~l~~~~~~gl 140 (335)
T 2fmp_A 98 NFLTRVSGIGPSAARKFVDE-GIKTLEDLRKNEDKLNHHQRIGL 140 (335)
T ss_dssp HHHTTSTTCCHHHHHHHHHT-TCCSHHHHHTCGGGSCHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHc-CCCCHHHHHHhhhhhHHHHHHHH
Confidence 45789999999999999888 9982 2 2 256666555444
No 44
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=63.13 E-value=2.6 Score=32.04 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=19.3
Q ss_pred EEEeeccccccCHHHHHHHHHHh
Q 033150 61 IEYSLQYIHGVGRTRARQILVDL 83 (126)
Q Consensus 61 V~~ALt~IyGIG~~~A~~IC~kl 83 (126)
..-.|++++|||+.+|..|+-..
T Consensus 119 ~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 119 TREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHcCCCcCHHHHHHHHHHH
Confidence 45569999999999999998643
No 45
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=62.80 E-value=2.8 Score=32.09 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=34.4
Q ss_pred CCCCeEEEEeeccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh
Q 033150 55 IPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 55 ip~nK~V~~ALt~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~ 107 (126)
--.+|++..+|... .+..+||+ +.+..+||-+|..+|.+.+++
T Consensus 203 ~~rrk~l~~~l~~~----------~l~~~~i~~~~r~e~l~~~~f~~l~~~~~~ 246 (249)
T 3ftd_A 203 QNRRKVLRKKIPEE----------LLKEAGINPDARVEQLSLEDFFKLYRLIED 246 (249)
T ss_dssp SSTTSCGGGTSCHH----------HHHHTTCCTTCCGGGCCHHHHHHHHHHHHC
T ss_pred hCcChhHHHHHHHH----------HHHHCCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 33456666666553 78999999 799999999999999998864
No 46
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=62.43 E-value=0.97 Score=37.74 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=33.0
Q ss_pred CeEEEEee---ccccccCHHHHHHHHHHhCCC-ccccCCCCHH
Q 033150 58 NKRIEYSL---QYIHGVGRTRARQILVDLKME-NKITKDMSEE 96 (126)
Q Consensus 58 nK~V~~AL---t~IyGIG~~~A~~IC~klGI~-~~kv~~Ltee 96 (126)
+++|.-+| +-|-|||--.|.+||-.+||+ ..+.++|+++
T Consensus 158 ~~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~Ls~~ 200 (364)
T 1tdh_A 158 DRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200 (364)
T ss_dssp GSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGG
T ss_pred cccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhhcCHH
Confidence 45566666 557899999999999999999 8888988887
No 47
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=61.70 E-value=3.7 Score=31.04 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=19.1
Q ss_pred eeccccccCHHHHHHHHHHhC
Q 033150 64 SLQYIHGVGRTRARQILVDLK 84 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klG 84 (126)
.|+++.|||+++|.+|...+.
T Consensus 108 ~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 108 LLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHH
Confidence 589999999999999998774
No 48
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=61.47 E-value=3.6 Score=30.73 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEeeccccccCHHHHHHHHHHhC
Q 033150 62 EYSLQYIHGVGRTRARQILVDLK 84 (126)
Q Consensus 62 ~~ALt~IyGIG~~~A~~IC~klG 84 (126)
...|+.|.|||+..|..|++.+|
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~fg 183 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERFG 183 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCHHHHHHHHHHcC
Confidence 44688999999999999999987
No 49
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=61.10 E-value=3.5 Score=31.43 Aligned_cols=20 Identities=25% Similarity=0.682 Sum_probs=18.0
Q ss_pred eeccccccCHHHHHHHHHHh
Q 033150 64 SLQYIHGVGRTRARQILVDL 83 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~kl 83 (126)
.|+++.|||+++|.+|+..|
T Consensus 109 ~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 109 ALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHTSTTCCHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHH
Confidence 58999999999999998665
No 50
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=60.34 E-value=3 Score=31.29 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEeeccccccCHHHHHHHHHH
Q 033150 61 IEYSLQYIHGVGRTRARQILVD 82 (126)
Q Consensus 61 V~~ALt~IyGIG~~~A~~IC~k 82 (126)
..-.|++++|||+.+|..|+-.
T Consensus 107 ~~~~L~~l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 107 DRAALEALPGVGRKTANVVLNT 128 (211)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCChHHHHHHHHH
Confidence 4467999999999999999865
No 51
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=60.02 E-value=1.9 Score=33.83 Aligned_cols=42 Identities=29% Similarity=0.307 Sum_probs=0.0
Q ss_pred eEEEEeeccccccCHHHHHHHHHHhCCCccccCCCCHHHHHHH
Q 033150 59 KRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITI 101 (126)
Q Consensus 59 K~V~~ALt~IyGIG~~~A~~IC~klGI~~~kv~~LteeQI~~L 101 (126)
......|+.|.|||+.+|+.|++.+|= -..+.+-|.+|+.++
T Consensus 169 ~~~~s~L~~IpGIG~k~ak~Ll~~FGS-l~~i~~As~eeL~~V 210 (226)
T 3c65_A 169 TMFHSVLDDIPGVGEKRKKALLNYFGS-VKKMKEATVEELQRA 210 (226)
T ss_dssp -------------------------------------------
T ss_pred ccccccccccCCCCHHHHHHHHHHhCC-HHHHHhCCHHHHHHc
Confidence 345678999999999999999998762 222334455555544
No 52
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=59.49 E-value=4.7 Score=27.03 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=37.0
Q ss_pred eEEEecCccCCCCeEEEEeeccccccCHHHHHHHHHHhCCC--cccc--CCCCHHHHHHHHHHHhhc
Q 033150 46 QCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME--NKIT--KDMSEEELITIRDEVSKY 108 (126)
Q Consensus 46 ~MvrIlgt~ip~nK~V~~ALt~IyGIG~~~A~~IC~klGI~--~~kv--~~LteeQI~~L~~~I~~~ 108 (126)
.|..+.--|++.+|+ +....++|++.|+. ...+ ++||+.|+.+|...|++.
T Consensus 3 ~M~vlV~YDI~~~kr------------r~kv~k~l~~yGl~rvQ~SVFe~~lt~~~~~~L~~~L~~~ 57 (91)
T 3exc_X 3 GMKLLVVYDVSDDSK------------RNKLANNLKKLGLERIQRSAFEGDMDSQRMKDLVRVVKLI 57 (91)
T ss_dssp -CEEEEEEECCSHHH------------HHHHHHHHHHTTCEEEETTEEEEECC--CHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCchH------------HHHHHHHHHHhCCccceeeEEEEECCHHHHHHHHHHHHHh
Confidence 466677777876652 37788999999964 4443 999999999999999873
No 53
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=58.91 E-value=6 Score=32.30 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=38.9
Q ss_pred CeEEEEeeccccccCHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHhh
Q 033150 58 NKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 58 nK~V~~ALt~IyGIG~~~A~~IC~klGI~~~kv~~LteeQI~~L~~~I~~ 107 (126)
++.+...|.. .+.++.+..+|+.+++.++++.+++++++.+|.+.|.+
T Consensus 299 ~~~~~~~l~~--~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 346 (417)
T 3v76_A 299 RQAVQTALAD--ILPRRLAQFFADEAKLTGRMLADLSDKTIDALASSIQV 346 (417)
T ss_dssp SSBHHHHHTT--TSCHHHHHHHHHHTTCTTCBGGGCCHHHHHHHHHHHHS
T ss_pred hhhHHHHHHH--HhhHHHHHHHHHhcCCCCCchhhCCHHHHHHHHHHhcC
Confidence 4444444543 37789999999999997778899999999999999987
No 54
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=58.73 E-value=7.2 Score=32.39 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=29.9
Q ss_pred eeccccccCHHHHHHHHHHhCCCc-cccCCCCHHHHHHH
Q 033150 64 SLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITI 101 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klGI~~-~kv~~LteeQI~~L 101 (126)
-++.+.|||+.++.++++++||.+ .-+..++.+++.+.
T Consensus 254 pv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~ 292 (435)
T 4ecq_A 254 PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSH 292 (435)
T ss_dssp BGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHH
T ss_pred CHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHH
Confidence 467899999999999999999994 33566777776543
No 55
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=58.38 E-value=3 Score=35.96 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEeeccccccCHHHHHHHHHHhCCC
Q 033150 61 IEYSLQYIHGVGRTRARQILVDLKME 86 (126)
Q Consensus 61 V~~ALt~IyGIG~~~A~~IC~klGI~ 86 (126)
...-|++|+|||+++|..|.+. |+.
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~~-G~~ 119 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWLA-GID 119 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHT-TCC
T ss_pred HHHHHhCCCCcCHHHHHHHHHc-CCC
Confidence 4455788899999999888887 665
No 56
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=58.06 E-value=4.5 Score=31.04 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=21.4
Q ss_pred EEEeec-cccccCHHHHHHHHHHhCCC
Q 033150 61 IEYSLQ-YIHGVGRTRARQILVDLKME 86 (126)
Q Consensus 61 V~~ALt-~IyGIG~~~A~~IC~klGI~ 86 (126)
.+-.|. +++|||+.+|..++..+|.+
T Consensus 122 ~re~Ll~~LpGVG~KTA~~vL~~~g~~ 148 (214)
T 3fhf_A 122 AREFLVRNIKGIGYKEASHFLRNVGYD 148 (214)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 455688 99999999999998776653
No 57
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=57.72 E-value=3.9 Score=33.23 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.4
Q ss_pred eeccccccCHHHHHHHHHHhCCC
Q 033150 64 SLQYIHGVGRTRARQILVDLKME 86 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klGI~ 86 (126)
-|++|+|||+++|.++-++ ||.
T Consensus 97 ll~~v~GiG~k~a~~l~~~-Gi~ 118 (335)
T 2bcq_A 97 LFSNIWGAGTKTAQMWYQQ-GFR 118 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHT-TCC
T ss_pred HHhcCCCcCHHHHHHHHHc-CCC
Confidence 3479999999999999887 988
No 58
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=57.50 E-value=3.7 Score=31.10 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.4
Q ss_pred EEeeccccccCHHHHHHHHHH
Q 033150 62 EYSLQYIHGVGRTRARQILVD 82 (126)
Q Consensus 62 ~~ALt~IyGIG~~~A~~IC~k 82 (126)
.-.|.+++|||+.+|..|+..
T Consensus 114 ~~~L~~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 114 RKAILDLPGVGKYTCAAVMCL 134 (221)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHH
Confidence 457999999999999999865
No 59
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=57.34 E-value=3.7 Score=31.44 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=21.8
Q ss_pred EEEEeeccccccCHHHHHHHHHH-hCCC
Q 033150 60 RIEYSLQYIHGVGRTRARQILVD-LKME 86 (126)
Q Consensus 60 ~V~~ALt~IyGIG~~~A~~IC~k-lGI~ 86 (126)
...-.|++++|||+.+|..|+-. +|-.
T Consensus 135 ~~~~~L~~lpGIG~kTA~~ill~alg~p 162 (233)
T 2h56_A 135 TVIEKLTAIKGIGQWTAEMFMMFSLGRL 162 (233)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCC
Confidence 46677999999999999999875 4543
No 60
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=57.25 E-value=3.8 Score=31.09 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=20.8
Q ss_pred cCCCCeEEEEeeccccccCHHHHHHHHHH
Q 033150 54 EIPNNKRIEYSLQYIHGVGRTRARQILVD 82 (126)
Q Consensus 54 ~ip~nK~V~~ALt~IyGIG~~~A~~IC~k 82 (126)
++|+ ..-.|.+++|||+.+|..|+..
T Consensus 103 ~~p~---~~~~L~~lpGIG~~TA~~il~~ 128 (225)
T 1kg2_A 103 KFPE---TFEEVAALPGVGRSTAGAILSL 128 (225)
T ss_dssp SCCC---SHHHHHTSTTCCHHHHHHHHHH
T ss_pred CchH---HHHHHhcCCCCcHHHHHHHHHH
Confidence 4554 3467999999999999999864
No 61
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=56.64 E-value=4 Score=35.21 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=34.2
Q ss_pred eeccccccCHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHhh------ccccccchhh
Q 033150 64 SLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSK------YMIEGDLVII 117 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klGI~~~kv~~LteeQI~~L~~~I~~------~~Ie~dLrR~ 117 (126)
.|+++.|||++++.+|..-+....+.-.-..-+|...+.+.|.+ ..+-|.+||-
T Consensus 132 ~L~~~~GiG~Ktaq~I~~~l~~~~~~~~r~~~~e~~~~~~~i~~~l~~~~~~~~Gs~RR~ 191 (578)
T 2w9m_A 132 ELAGLKGFGAKSAATILENVVFLFEARQRQSLRAGLAVAEELAGALTDLSPAPAGDVRRG 191 (578)
T ss_dssp TTTTSTTCCHHHHHHHHHHHHHHHHHCSSEEHHHHHHHHHHHHHHTGGGCCEECHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHhhcCCeeHHHHHHHHHHHHHHHHhCCCEEecccccC
Confidence 04567888888888886666555444456667777777777654 2344555554
No 62
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=56.50 E-value=4.1 Score=31.06 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEeeccccccCHHHHHHHHHH-hCC
Q 033150 61 IEYSLQYIHGVGRTRARQILVD-LKM 85 (126)
Q Consensus 61 V~~ALt~IyGIG~~~A~~IC~k-lGI 85 (126)
..-.|++++|||+.+|..|+.. +|.
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~a~g~ 136 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSVAFGV 136 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCccHHHHHHHHHHHCCC
Confidence 4568999999999999999864 443
No 63
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=56.43 E-value=4.1 Score=31.88 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.3
Q ss_pred EEEeeccccccCHHHHHHHHHH
Q 033150 61 IEYSLQYIHGVGRTRARQILVD 82 (126)
Q Consensus 61 V~~ALt~IyGIG~~~A~~IC~k 82 (126)
+.-.|++++|||+.+|..||-.
T Consensus 205 ~~~~L~~lpGIG~~TA~~ill~ 226 (282)
T 1mpg_A 205 AMKTLQTFPGIGRWTANYFALR 226 (282)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHH
Confidence 4677999999999999999864
No 64
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=55.81 E-value=3.9 Score=31.43 Aligned_cols=25 Identities=20% Similarity=0.229 Sum_probs=20.9
Q ss_pred EEEeec-cccccCHHHHHHHHHHhCC
Q 033150 61 IEYSLQ-YIHGVGRTRARQILVDLKM 85 (126)
Q Consensus 61 V~~ALt-~IyGIG~~~A~~IC~klGI 85 (126)
..-.|. +++|||+.+|..+|..+|.
T Consensus 127 ~r~~L~~~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 127 SREFLVRNAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 456688 9999999999999876665
No 65
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=55.63 E-value=6.5 Score=25.88 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCC-cccc--CCCCHHHHHHHHHHHhhc
Q 033150 73 RTRARQILVDLKME-NKIT--KDMSEEELITIRDEVSKY 108 (126)
Q Consensus 73 ~~~A~~IC~klGI~-~~kv--~~LteeQI~~L~~~I~~~ 108 (126)
.....++|++.|.. ...+ ++||+.|+.+|...+++.
T Consensus 14 ~~kv~k~l~~yg~rvQ~SVFeg~lt~~~~~~L~~~l~~~ 52 (85)
T 2i0x_A 14 VNKVKKFLRMHLNWVQNSVFEGEVTLAEFERIKEGLKKI 52 (85)
T ss_dssp HHHHHHHHTTTSEEEETTEEEEECCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcccceeEEEEECCHHHHHHHHHHHHHh
Confidence 45677889999877 5554 999999999999999873
No 66
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=55.42 E-value=4.4 Score=31.24 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=20.0
Q ss_pred EEEEeeccccccCHHHHHHHHHH
Q 033150 60 RIEYSLQYIHGVGRTRARQILVD 82 (126)
Q Consensus 60 ~V~~ALt~IyGIG~~~A~~IC~k 82 (126)
.+.-.|+.++|||+.+|..||-.
T Consensus 147 ~~~~~L~~l~GIG~~TA~~ill~ 169 (232)
T 4b21_A 147 ELMESLSKIKGVKRWTIEMYSIF 169 (232)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHH
Confidence 36678999999999999999864
No 67
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=54.38 E-value=4.7 Score=30.90 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=20.4
Q ss_pred EEEeeccccccCHHHHHHHHHH-hCC
Q 033150 61 IEYSLQYIHGVGRTRARQILVD-LKM 85 (126)
Q Consensus 61 V~~ALt~IyGIG~~~A~~IC~k-lGI 85 (126)
+.-.|+.++|||+.+|..|+-. +|-
T Consensus 137 ~~~~L~~l~GIG~~TA~~ill~~lg~ 162 (228)
T 3s6i_A 137 LIERLTQIKGIGRWTVEMLLIFSLNR 162 (228)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTSCC
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCC
Confidence 4678999999999999999853 443
No 68
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=54.23 E-value=4.5 Score=30.86 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=19.8
Q ss_pred EEEEeeccccccCHHHHHHHHHH
Q 033150 60 RIEYSLQYIHGVGRTRARQILVD 82 (126)
Q Consensus 60 ~V~~ALt~IyGIG~~~A~~IC~k 82 (126)
.+.-.|+.++|||+.+|..||-.
T Consensus 143 e~~~~L~~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 143 LVIAELVQLPGIGRWTAEMFLLF 165 (225)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH
Confidence 35677999999999999999864
No 69
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=53.56 E-value=4.6 Score=31.88 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=20.8
Q ss_pred EEEeeccccccCHHHHHHHHHH-hC
Q 033150 61 IEYSLQYIHGVGRTRARQILVD-LK 84 (126)
Q Consensus 61 V~~ALt~IyGIG~~~A~~IC~k-lG 84 (126)
+.-.|++++|||+.+|..||-. +|
T Consensus 208 ~~~~L~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 208 AYEYLTSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCcCHHHHHHHHHHccC
Confidence 5677999999999999999975 56
No 70
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=53.45 E-value=6 Score=29.05 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=25.3
Q ss_pred EeeccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHH
Q 033150 63 YSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV 105 (126)
Q Consensus 63 ~ALt~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I 105 (126)
-.|.+++|||+.+|..++- +..+ ...+-= .|-.+.+.-.++
T Consensus 104 ~~L~~LpGVG~yTAdav~~-F~~~e~~~V~p-~D~~l~r~l~wl 145 (161)
T 4e9f_A 104 KYPIELHGIGKYGNDSYRI-FCVNEWKQVHP-EDHKLNKYHDWL 145 (161)
T ss_dssp SSGGGSTTCCHHHHHHHHH-HTSSCGGGCCC-CSHHHHHHHHHH
T ss_pred hhhhcCCCchHHHHHHHHH-HHCCCCCCCCC-CcHHHHHHHHHH
Confidence 4689999999999998764 3445 334321 234444444444
No 71
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=53.00 E-value=5 Score=31.78 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=21.9
Q ss_pred EEEEeeccccccCHHHHHHHHHH-hCCC
Q 033150 60 RIEYSLQYIHGVGRTRARQILVD-LKME 86 (126)
Q Consensus 60 ~V~~ALt~IyGIG~~~A~~IC~k-lGI~ 86 (126)
...-.|+.++|||+.+|..||-. +|-.
T Consensus 208 ~~~~~L~~lpGIG~~TA~~ill~~lg~p 235 (290)
T 3i0w_A 208 ECHEELKKFMGVGPQVADCIMLFSMQKY 235 (290)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHCCT
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCC
Confidence 46678999999999999999965 5543
No 72
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=51.48 E-value=14 Score=28.87 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=30.6
Q ss_pred EEEeeccccccCHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHhh
Q 033150 61 IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 61 V~~ALt~IyGIG~~~A~~IC~klGI~~~kv~~LteeQI~~L~~~I~~ 107 (126)
+.-+|.+..|||+++|.++.-.+ =+-.+++...|.+.|.+
T Consensus 24 LI~~l~~LPGIG~KsA~RlA~hL-------L~~~~~~~~~La~al~~ 63 (212)
T 3vdp_A 24 LIEELSKLPGIGPKTAQRLAFFI-------INMPLDEVRSLSQAIIE 63 (212)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHH-------TTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHH-------HcCCHHHHHHHHHHHHH
Confidence 45678999999999999997543 23467788888777754
No 73
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=51.07 E-value=2 Score=33.25 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=34.6
Q ss_pred CCCeEEEEeeccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHH
Q 033150 56 PNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV 105 (126)
Q Consensus 56 p~nK~V~~ALt~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I 105 (126)
-.+|++..+|..+++ . ..++.+||+ +.+..+||-+|..+|.+.+
T Consensus 210 ~rrK~l~~~L~~~~~--~----~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 210 YRRKTVGNALKKLIN--P----SQWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp STTSCHHHHTTTTCC--G----GGTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred ccChHHHHHHhhhCC--H----HHHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 346777777877653 1 346889999 9999999999999998876
No 74
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=48.50 E-value=8.4 Score=31.24 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=24.9
Q ss_pred eeccccccCHHHHHHHHHHhCCC-ccccCCCC
Q 033150 64 SLQYIHGVGRTRARQILVDLKME-NKITKDMS 94 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klGI~-~~kv~~Lt 94 (126)
.|+.+.|||+++|.+|.+-+.=. -.++.+|.
T Consensus 58 ~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~ 89 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEILESGHLRKLDHIS 89 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCC
T ss_pred HHhcCCCccHHHHHHHHHHHHcCCchHHHHHh
Confidence 38999999999999999987744 44566664
No 75
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=47.87 E-value=9.8 Score=30.84 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=21.7
Q ss_pred EEEecCccCCCCeEEEEeeccccccCHHHHHHHHHHhC
Q 033150 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK 84 (126)
Q Consensus 47 MvrIlgt~ip~nK~V~~ALt~IyGIG~~~A~~IC~klG 84 (126)
+.-+.|+|-.++ |.|||+++|.+++++.|
T Consensus 225 ~~~L~G~D~~~g---------ipGiG~KtA~kll~~~g 253 (341)
T 3q8k_A 225 LCILLGSDYCES---------IRGIGPKRAVDLIQKHK 253 (341)
T ss_dssp HHHHHCCSSSCC---------CTTCCHHHHHHHHHHHC
T ss_pred HHHhcCCCCCCC---------CCCccHHHHHHHHHHcC
Confidence 344566554433 68999999999999887
No 76
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=47.78 E-value=8.7 Score=29.93 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=16.8
Q ss_pred eeccccccCHHHHHHHHHH
Q 033150 64 SLQYIHGVGRTRARQILVD 82 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~k 82 (126)
.|..+.|||+.+|..|.+.
T Consensus 133 eL~~LpGIG~k~A~~IIey 151 (205)
T 2i5h_A 133 QLELLPGVGKKMMWAIIEE 151 (205)
T ss_dssp GGGGSTTCCHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHH
Confidence 4889999999999999854
No 77
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=46.53 E-value=7.2 Score=32.00 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEeeccccccCHHHHHHHHHH
Q 033150 60 RIEYSLQYIHGVGRTRARQILVD 82 (126)
Q Consensus 60 ~V~~ALt~IyGIG~~~A~~IC~k 82 (126)
...-.|+.++|||+.+|..||-.
T Consensus 250 ~~~~~L~~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 250 EAHKALCILPGVGTCVADKICLM 272 (360)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHH
Confidence 46678999999999999999965
No 78
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=45.19 E-value=7.5 Score=31.37 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=19.7
Q ss_pred EEEeeccccccCHHHHHHHHHHh
Q 033150 61 IEYSLQYIHGVGRTRARQILVDL 83 (126)
Q Consensus 61 V~~ALt~IyGIG~~~A~~IC~kl 83 (126)
..-.|.+++|||+.+|..|+...
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHH
Confidence 45679999999999999998764
No 79
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=44.44 E-value=9.8 Score=26.02 Aligned_cols=34 Identities=6% Similarity=0.106 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCC-cccc--CCCCHHHHHHHHHHHhh
Q 033150 74 TRARQILVDLKME-NKIT--KDMSEEELITIRDEVSK 107 (126)
Q Consensus 74 ~~A~~IC~klGI~-~~kv--~~LteeQI~~L~~~I~~ 107 (126)
....++|++.|.. ...+ ++||+.|+.+|...+++
T Consensus 25 ~kv~k~~~~yg~rvQ~SVFe~~lt~~~~~~L~~~l~~ 61 (100)
T 4es1_A 25 RKVAKACQNYGQRVQNSVFECIVDSTQLTSLKLELTS 61 (100)
T ss_dssp HHHHHHHHTTEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhheeeEEEEEcCHHHHHHHHHHHHh
Confidence 4567889999977 5554 99999999999998877
No 80
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=44.20 E-value=19 Score=28.56 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=28.0
Q ss_pred eccccccCHHHHHHHHHHhCCCcc-ccCCCCHHHHHHH
Q 033150 65 LQYIHGVGRTRARQILVDLKMENK-ITKDMSEEELITI 101 (126)
Q Consensus 65 Lt~IyGIG~~~A~~IC~klGI~~~-kv~~LteeQI~~L 101 (126)
++.+.|||+.++.++ +++||.+. -+..++.+++.+.
T Consensus 180 v~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~~~ 216 (352)
T 1jx4_A 180 IADVPGIGNITAEKL-KKLGINKLVDTLSIEFDKLKGM 216 (352)
T ss_dssp GGGSTTCCHHHHHHH-HTTTCCBGGGGGSSCHHHHHHH
T ss_pred CCcccccCHHHHHHH-HHcCCchHHHHHCCCHHHHHHh
Confidence 688999999988875 88999943 3667777777655
No 81
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=43.72 E-value=21 Score=28.18 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=31.0
Q ss_pred EEEEeeccccccCHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHhh
Q 033150 60 RIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 60 ~V~~ALt~IyGIG~~~A~~IC~klGI~~~kv~~LteeQI~~L~~~I~~ 107 (126)
.+.-+|.+..|||+++|.++.-.+ =+..+++...|.+.|.+
T Consensus 9 ~LI~~l~~LPGIG~KSA~RlA~hL-------L~~~~~~~~~La~al~~ 49 (228)
T 1vdd_A 9 SLIRELSRLPGIGPKSAQRLAFHL-------FEQPREDIERLASALLE 49 (228)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHH-------SSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhHCCCCCHHHHHHHHHHH-------HcCCHHHHHHHHHHHHH
Confidence 355678999999999999998543 23467788888777754
No 82
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=43.48 E-value=11 Score=25.13 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.9
Q ss_pred eccccccCHHHHHHHHHHhC
Q 033150 65 LQYIHGVGRTRARQILVDLK 84 (126)
Q Consensus 65 Lt~IyGIG~~~A~~IC~klG 84 (126)
+..+.|||++++..|-++|.
T Consensus 60 ~~~L~giG~ki~~~L~e~L~ 79 (87)
T 2kp7_A 60 AKILQHFGDRLCRMLDEKLK 79 (87)
T ss_dssp HHTCTTTCHHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHHHHHHHH
Confidence 46899999999999987763
No 83
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=43.38 E-value=32 Score=26.26 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCccccCCCCHHHHHHHHHHHhhcc
Q 033150 75 RARQILVDLKMENKITKDMSEEELITIRDEVSKYM 109 (126)
Q Consensus 75 ~A~~IC~klGI~~~kv~~LteeQI~~L~~~I~~~~ 109 (126)
....++..+||++.+..+||.+|..+|.+.+++..
T Consensus 247 ~~~~~l~~~~~~~~R~e~l~~~~f~~l~~~~~~~~ 281 (285)
T 1zq9_A 247 KIQQILTSTGFSDKRARSMDIDDFIRLLHGFNAEG 281 (285)
T ss_dssp HHHHHHHHHTCTTCBGGGCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCChhhCCHHHHHHHHHHHHHcC
Confidence 34677899999977999999999999999986543
No 84
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=43.10 E-value=14 Score=27.83 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=18.7
Q ss_pred eccccccCHHHHHHHHHHhCCCc
Q 033150 65 LQYIHGVGRTRARQILVDLKMEN 87 (126)
Q Consensus 65 Lt~IyGIG~~~A~~IC~klGI~~ 87 (126)
++.+.|||+.++.++ +++||.+
T Consensus 186 v~~l~giG~~~~~~L-~~~Gi~T 207 (221)
T 1im4_A 186 IDEIPGIGSVLARRL-NELGIQK 207 (221)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCB
T ss_pred cccccCCCHHHHHHH-HHcCCCc
Confidence 688999999988875 8899983
No 85
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=43.05 E-value=11 Score=24.93 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCC-cccc--CCCCHHHHHHHHHHHhhc
Q 033150 74 TRARQILVDLKME-NKIT--KDMSEEELITIRDEVSKY 108 (126)
Q Consensus 74 ~~A~~IC~klGI~-~~kv--~~LteeQI~~L~~~I~~~ 108 (126)
....++|++.|.. ...+ ++||+.|+.+|...++++
T Consensus 19 ~kv~k~l~~yg~rvQ~SVFe~~lt~~~~~~L~~~L~~~ 56 (90)
T 1zpw_X 19 VKLANLLKSYGERVQLSVFECYLDERLLEDLRRRARRL 56 (90)
T ss_dssp HHHHHHHHTTEEEEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccceEeEEEEEcCHHHHHHHHHHHHHh
Confidence 5667889999977 4443 999999999999999873
No 86
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=42.58 E-value=10 Score=32.58 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=32.2
Q ss_pred eccccccCHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHHhh
Q 033150 65 LQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 65 Lt~IyGIG~~~A~~IC~klGI~~~kv~~LteeQI~~L~~~I~~ 107 (126)
|+++.|||+++|.+|+..+.-....-.-..-+|...+.+.|.+
T Consensus 130 l~~~~GiG~k~a~~i~~~l~~~~~~~~r~~~~e~~~~~~~i~~ 172 (575)
T 3b0x_A 130 LTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLE 172 (575)
T ss_dssp GGGSTTCCHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHHHHHHHHHHHhccceeHHHHHHHHHHHHH
Confidence 7899999999999998666655333455667777777777654
No 87
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=41.13 E-value=14 Score=29.66 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=16.6
Q ss_pred cccccCHHHHHHHHHHhC
Q 033150 67 YIHGVGRTRARQILVDLK 84 (126)
Q Consensus 67 ~IyGIG~~~A~~IC~klG 84 (126)
.|.|||+++|.++.++.|
T Consensus 207 GVpGIG~KTA~kLL~~~g 224 (290)
T 1exn_A 207 GVEGIGAKRGYNIIREFG 224 (290)
T ss_dssp CCTTCCHHHHHHHHHHHC
T ss_pred CCCcCCHhHHHHHHHHcC
Confidence 589999999999999987
No 88
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=40.61 E-value=17 Score=28.93 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=28.0
Q ss_pred eeccccccCHHHHHHHHHHhCCCcc-ccCCCCHHHHHHH
Q 033150 64 SLQYIHGVGRTRARQILVDLKMENK-ITKDMSEEELITI 101 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klGI~~~-kv~~LteeQI~~L 101 (126)
-+..+.|||+.++.++ +++||.+. -+.+++.+++.+.
T Consensus 179 pv~~l~GiG~~~~~~L-~~~GI~Ti~dL~~~~~~~L~~~ 216 (356)
T 4dez_A 179 PPDALWGVGPKTTKKL-AAMGITTVADLAVTDPSVLTTA 216 (356)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCSHHHHHTSCHHHHHHH
T ss_pred cHHHHcCCchhHHHHH-HHcCCCeecccccCCHHHHHHH
Confidence 3578999999999876 78999943 3566777776654
No 89
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=39.37 E-value=6.2 Score=32.32 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.9
Q ss_pred eeccccccCHHHHHHHHHHhC
Q 033150 64 SLQYIHGVGRTRARQILVDLK 84 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klG 84 (126)
.|+.+.|||+.+|.+|-+-+.
T Consensus 62 ~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 62 QLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp GGTTCTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHH
Confidence 399999999999999998766
No 90
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=39.32 E-value=5.5 Score=31.55 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=42.9
Q ss_pred cCCCCeEEEEeecccc---ccCHHHHHHHHHHh-----CCC---ccccCCCCHHHHHHHHHHHhh
Q 033150 54 EIPNNKRIEYSLQYIH---GVGRTRARQILVDL-----KME---NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 54 ~ip~nK~V~~ALt~Iy---GIG~~~A~~IC~kl-----GI~---~~kv~~LteeQI~~L~~~I~~ 107 (126)
.--.+|.+..+|...+ |+.+..+..+++.+ |++ +.+..+||-+|+.+|.+.+.+
T Consensus 223 F~~rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~ 287 (295)
T 3gru_A 223 FQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYR 287 (295)
T ss_dssp HTTTTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHH
T ss_pred HccCchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHH
Confidence 3345788888887764 45577788889998 777 578999999999999999865
No 91
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=38.19 E-value=13 Score=32.78 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=31.3
Q ss_pred EEeeccccccCHHHHHHHHHHhCC---------CccccCCCCHHHHHHHH
Q 033150 62 EYSLQYIHGVGRTRARQILVDLKM---------ENKITKDMSEEELITIR 102 (126)
Q Consensus 62 ~~ALt~IyGIG~~~A~~IC~klGI---------~~~kv~~LteeQI~~L~ 102 (126)
..-|+.|.|||+.+|..+++++|= +..+..-+.+.|+.+|.
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELRedGIGekqarrI~ 516 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDGLTDAQIRELK 516 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHHHTTCCHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHHHccccHHHHHHHh
Confidence 467899999999999999999883 22344667777776663
No 92
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=38.08 E-value=19 Score=28.66 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=27.2
Q ss_pred eccccccCHHHHHHHHHHhCCCcc-ccCCCCHHHHHHH
Q 033150 65 LQYIHGVGRTRARQILVDLKMENK-ITKDMSEEELITI 101 (126)
Q Consensus 65 Lt~IyGIG~~~A~~IC~klGI~~~-kv~~LteeQI~~L 101 (126)
++.+.|||+.++.++ +++||.+. -+..++.+++.+.
T Consensus 181 v~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~~~ 217 (354)
T 3bq0_A 181 IDEIPGIGSVLARRL-NELGIQKLRDILSKNYNELEKI 217 (354)
T ss_dssp STTSTTCCHHHHHHH-TTTTCCBGGGGGGSCHHHHHHH
T ss_pred cccccCcCHHHHHHH-HHcCCccHHHHhcCCHHHHHHH
Confidence 688999999988875 88999843 3566777766554
No 93
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=35.95 E-value=18 Score=28.80 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=16.7
Q ss_pred cccccCHHHHHHHHHHhC
Q 033150 67 YIHGVGRTRARQILVDLK 84 (126)
Q Consensus 67 ~IyGIG~~~A~~IC~klG 84 (126)
.+.|||+++|.++.++.|
T Consensus 239 Gv~GiG~KtA~kLl~~~g 256 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKTYG 256 (336)
T ss_dssp CCTTCCHHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 589999999999999987
No 94
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=35.79 E-value=17 Score=30.14 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=27.5
Q ss_pred eccccccCHHHHHHHHHHhCCCcc-ccCCCCHHHHHHH
Q 033150 65 LQYIHGVGRTRARQILVDLKMENK-ITKDMSEEELITI 101 (126)
Q Consensus 65 Lt~IyGIG~~~A~~IC~klGI~~~-kv~~LteeQI~~L 101 (126)
++++.|||+.++.++ +.+||.+. -+..++.+++.+.
T Consensus 236 v~~l~GIG~~t~~~L-~~lGI~TigdLa~~~~~~L~~~ 272 (420)
T 3osn_A 236 IKEIPGIGYKTAKCL-EALGINSVRDLQTFSPKILEKE 272 (420)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCSHHHHHHSCHHHHHHH
T ss_pred HHHccCCCHHHHHHH-HHhCCCcHHHHhhCCHHHHHHH
Confidence 789999999999887 67999843 3556677776654
No 95
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=35.49 E-value=13 Score=29.82 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=17.9
Q ss_pred EEeecc-ccccCHHHHHHHHHH
Q 033150 62 EYSLQY-IHGVGRTRARQILVD 82 (126)
Q Consensus 62 ~~ALt~-IyGIG~~~A~~IC~k 82 (126)
.-.|.+ ++|||+.+|..|+..
T Consensus 127 ~~~Ll~~LpGIG~kTA~~iL~~ 148 (287)
T 3n5n_X 127 AETLQQLLPGVGRYTAGAIASI 148 (287)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHH
Confidence 467887 999999999999854
No 96
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=34.76 E-value=25 Score=23.66 Aligned_cols=22 Identities=9% Similarity=0.379 Sum_probs=19.0
Q ss_pred eeccccccCHHHHHHHHHHhCCC
Q 033150 64 SLQYIHGVGRTRARQILVDLKME 86 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klGI~ 86 (126)
-|+.+.+||+.++..+ .++||+
T Consensus 5 ~L~~LPNiG~~~e~~L-~~vGI~ 26 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDL-IKAGIK 26 (93)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCC
T ss_pred HhhcCCCCCHHHHHHH-HHcCCC
Confidence 4789999999998765 899998
No 97
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=33.84 E-value=28 Score=20.81 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
..||++|+..|..+|..
T Consensus 61 ~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLT 77 (79)
T ss_dssp TTSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 58999999999999864
No 98
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=33.42 E-value=20 Score=29.34 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=16.8
Q ss_pred cccccCHHHHHHHHHHhC
Q 033150 67 YIHGVGRTRARQILVDLK 84 (126)
Q Consensus 67 ~IyGIG~~~A~~IC~klG 84 (126)
.|.|||+++|.+++++.|
T Consensus 255 GVpGIG~KtA~kLl~~~g 272 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYG 272 (363)
T ss_dssp CSTTCCHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 678999999999999987
No 99
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=33.36 E-value=8.6 Score=31.82 Aligned_cols=22 Identities=14% Similarity=-0.049 Sum_probs=19.2
Q ss_pred eeccccccCHHHHHHHHHHhCC
Q 033150 64 SLQYIHGVGRTRARQILVDLKM 85 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klGI 85 (126)
.|+.+.|||+.+|.+|-+-+.=
T Consensus 81 ~l~~lpGIG~~ia~kI~E~l~t 102 (381)
T 1jms_A 81 DTEGIPCLGDKVKSIIEGIIED 102 (381)
T ss_dssp GGTTCSSCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHc
Confidence 3899999999999999987653
No 100
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=33.20 E-value=27 Score=21.16 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
+.||++|+..|..+|..
T Consensus 60 ~~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 60 GRADREDLVKAIEYMLS 76 (78)
T ss_dssp TTBCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 57999999999999864
No 101
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=32.93 E-value=24 Score=26.28 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=27.0
Q ss_pred HHHHHhCCC-ccccCCCCHHHHHHHHHHHhhc
Q 033150 78 QILVDLKME-NKITKDMSEEELITIRDEVSKY 108 (126)
Q Consensus 78 ~IC~klGI~-~~kv~~LteeQI~~L~~~I~~~ 108 (126)
++++.+|++ +.+..+||-+|..+|.+.++++
T Consensus 211 ~~~~~~~~~~~~r~e~l~~~~~~~l~~~~~~~ 242 (244)
T 1qam_A 211 QFNNSLKHAGIDDLNNISFEQFLSLFNSYKLF 242 (244)
T ss_dssp HHHHHHHHHTCSCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCceeCCHHHHHHHHHHHHHh
Confidence 467889999 8999999999999999988653
No 102
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=32.35 E-value=29 Score=21.16 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
..||++|+..|..+|..
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 58999999999999864
No 103
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=31.77 E-value=33 Score=20.45 Aligned_cols=17 Identities=6% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
+.||++|+..|..+|..
T Consensus 64 ~~ls~~ei~~l~~yl~~ 80 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLD 80 (86)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 68999999999999965
No 104
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=30.96 E-value=37 Score=20.20 Aligned_cols=16 Identities=25% Similarity=0.246 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhh
Q 033150 92 DMSEEELITIRDEVSK 107 (126)
Q Consensus 92 ~LteeQI~~L~~~I~~ 107 (126)
.||++|+..|..+|..
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLS 80 (82)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8999999999999864
No 105
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=30.80 E-value=23 Score=28.42 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=16.8
Q ss_pred cccccCHHHHHHHHHHhC
Q 033150 67 YIHGVGRTRARQILVDLK 84 (126)
Q Consensus 67 ~IyGIG~~~A~~IC~klG 84 (126)
.+.|||+++|.+++++.|
T Consensus 238 Gv~GIG~KtA~kLi~~~g 255 (346)
T 2izo_A 238 GIRGIGPERALKIIKKYG 255 (346)
T ss_dssp CSTTCCHHHHHHHHHHSS
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 688999999999999987
No 106
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=30.73 E-value=33 Score=21.33 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHHh
Q 033150 92 DMSEEELITIRDEVS 106 (126)
Q Consensus 92 ~LteeQI~~L~~~I~ 106 (126)
.||++|+..|..+|.
T Consensus 67 ~Lsd~ei~~v~~yi~ 81 (83)
T 1cc5_A 67 DCSDDELKAAIGKMS 81 (83)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 699999999999885
No 107
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=30.59 E-value=36 Score=19.98 Aligned_cols=17 Identities=6% Similarity=-0.075 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
..||++|+..|..+|..
T Consensus 53 ~~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 53 GIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp CSSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 78999999999999864
No 108
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=30.17 E-value=35 Score=20.47 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhh
Q 033150 92 DMSEEELITIRDEVSK 107 (126)
Q Consensus 92 ~LteeQI~~L~~~I~~ 107 (126)
.||++|+..|..+|..
T Consensus 63 ~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILS 78 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8999999999999864
No 109
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=30.06 E-value=24 Score=27.78 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=30.6
Q ss_pred eeccccccCHHHHHHHHHHhCCC-cccc-----------CCCCHHHHHHHHHHHhh
Q 033150 64 SLQYIHGVGRTRARQILVDLKME-NKIT-----------KDMSEEELITIRDEVSK 107 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klGI~-~~kv-----------~~LteeQI~~L~~~I~~ 107 (126)
.|.++.|||+..+++ |.+.|+. -..+ -.+++.+..++.+.+++
T Consensus 158 pL~Qlp~i~~~~~~~-l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 158 PLRQIPHFNNKILEK-CKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGGSTTCCHHHHHH-HHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHHHH-HHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHh
Confidence 478999999999887 5577874 2222 24667777777777776
No 110
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=29.99 E-value=36 Score=20.40 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
+.||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (88)
T 3dmi_A 65 GRLSDEEIANVAAYVLA 81 (88)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999999975
No 111
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=29.73 E-value=29 Score=20.87 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
..||++|+..|..+|..
T Consensus 63 ~~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 63 VNVSDADAKALADWILT 79 (81)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 58999999999999864
No 112
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=29.53 E-value=19 Score=32.22 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=29.8
Q ss_pred ccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHH
Q 033150 66 QYIHGVGRTRARQILVDLKME-NKITKDMSEEELITI 101 (126)
Q Consensus 66 t~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L 101 (126)
-.|.|+|++++.++.+..+|. -.-+-+|+.+++..+
T Consensus 444 ldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l 480 (667)
T 1dgs_A 444 MDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGL 480 (667)
T ss_dssp SCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTT
T ss_pred cCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcc
Confidence 369999999999999999999 666778887776543
No 113
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=29.44 E-value=34 Score=20.56 Aligned_cols=17 Identities=6% Similarity=0.309 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
+.||++|+..|..+|..
T Consensus 70 ~~ls~~ei~~l~~yl~~ 86 (93)
T 3dr0_A 70 GRLSDADIANVAAYIAD 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 68999999999999975
No 114
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=29.31 E-value=15 Score=31.45 Aligned_cols=24 Identities=8% Similarity=0.307 Sum_probs=21.1
Q ss_pred EeeccccccCHHHHHHHHHHhCCC
Q 033150 63 YSLQYIHGVGRTRARQILVDLKME 86 (126)
Q Consensus 63 ~ALt~IyGIG~~~A~~IC~klGI~ 86 (126)
.-++.+.|||+.++.++.+.+||.
T Consensus 307 lPV~~l~GIG~~t~~~L~~llGI~ 330 (520)
T 3mfi_A 307 FEITSFWTLGGVLGKELIDVLDLP 330 (520)
T ss_dssp CCGGGSTTCSSHHHHHHHHHTTCC
T ss_pred CcHHHhcCCCHHHHHHHHHhcCCC
Confidence 456889999999999999988994
No 115
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=29.22 E-value=38 Score=20.67 Aligned_cols=17 Identities=12% Similarity=0.347 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
+.||++|+..|..+|..
T Consensus 68 ~~ls~~ei~~l~~yl~~ 84 (91)
T 1ls9_A 68 DRLDEDDIEAVSNYVYD 84 (91)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHH
Confidence 57999999999999975
No 116
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=29.22 E-value=66 Score=23.57 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=22.5
Q ss_pred cCCCCeEEEEeeccccccCHHHHHHHHHH-hC
Q 033150 54 EIPNNKRIEYSLQYIHGVGRTRARQILVD-LK 84 (126)
Q Consensus 54 ~ip~nK~V~~ALt~IyGIG~~~A~~IC~k-lG 84 (126)
+.+..++..++|+.--|-|+++..+.+++ +|
T Consensus 16 ~~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 16 QPNGGEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred hccCCCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34566778999999999999987776655 88
No 117
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=29.20 E-value=29 Score=20.65 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
..||++|+..|..+|..
T Consensus 69 ~~ls~~ei~~l~~yl~s 85 (87)
T 2zxy_A 69 KGLSDAELKALADFILS 85 (87)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 57999999999999864
No 118
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.20 E-value=44 Score=23.70 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=19.5
Q ss_pred cCCCCHHHHHHHHHHHhhcccccc
Q 033150 90 TKDMSEEELITIRDEVSKYMIEGD 113 (126)
Q Consensus 90 v~~LteeQI~~L~~~I~~~~Ie~d 113 (126)
..+|+++|+..|.+||....+...
T Consensus 9 ~~~l~~ee~~el~~WL~~l~Ls~~ 32 (127)
T 2ee7_A 9 ASSVDEEALHQLYLWVDNIPLSRP 32 (127)
T ss_dssp CSSCCHHHHHHHHHHHHHSCCSCC
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCC
Confidence 378999999999999997555544
No 119
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=29.09 E-value=27 Score=27.69 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=15.8
Q ss_pred cccccCHHHHHHHHHHhC
Q 033150 67 YIHGVGRTRARQILVDLK 84 (126)
Q Consensus 67 ~IyGIG~~~A~~IC~klG 84 (126)
.+.|||+++|.++.++ |
T Consensus 229 GvpGiG~ktA~kli~~-g 245 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS-G 245 (326)
T ss_dssp TTTTCCHHHHHHHHHH-T
T ss_pred CCCCcCHHHHHHHHHc-C
Confidence 7899999999999998 5
No 120
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=29.08 E-value=31 Score=20.72 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
+.||++|+..|..+|..
T Consensus 62 ~~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 62 KRYSDEEMKAMADYMSK 78 (79)
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 57999999999999853
No 121
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=28.68 E-value=39 Score=20.35 Aligned_cols=17 Identities=12% Similarity=0.302 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
+.||++|+..|..+|..
T Consensus 66 ~~ls~~ei~~l~~yl~~ 82 (89)
T 1c6r_A 66 GTLDDDEIAAVAAYVYD 82 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 57999999999999975
No 122
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=28.61 E-value=59 Score=26.04 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=32.4
Q ss_pred cCHHHHHHHHHHhCCC-ccccCCCCHHHHHHHHHHHhh
Q 033150 71 VGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 71 IG~~~A~~IC~klGI~-~~kv~~LteeQI~~L~~~I~~ 107 (126)
+-..++..+++..||+ +++..++++++.++|.+.+++
T Consensus 331 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 368 (447)
T 2i0z_A 331 VPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKE 368 (447)
T ss_dssp SCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhhC
Confidence 4556788899999999 888999999999999988887
No 123
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=28.49 E-value=40 Score=19.97 Aligned_cols=17 Identities=12% Similarity=0.179 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
+.||++|+..|..+|..
T Consensus 63 ~~ls~~ei~~l~~yl~~ 79 (85)
T 1gdv_A 63 GRLVDEDIEDAANYVLS 79 (85)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999999965
No 124
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=28.49 E-value=40 Score=20.52 Aligned_cols=18 Identities=6% Similarity=0.198 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 033150 91 KDMSEEELITIRDEVSKY 108 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~~ 108 (126)
+.||++|+..|..+|...
T Consensus 65 ~~ls~~ei~~l~~yl~~l 82 (87)
T 1cno_A 65 TALSDADIANLAAYYASN 82 (87)
T ss_dssp TTCCHHHHHHHHHHHHHS
T ss_pred hhCCHHHHHHHHHHHHhC
Confidence 689999999999999763
No 125
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=28.17 E-value=40 Score=20.40 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
+.||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (90)
T 1cyi_A 65 DRLSEEEIQAVAEYVFK 81 (90)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 57999999999999975
No 126
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=28.01 E-value=23 Score=19.76 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=30.2
Q ss_pred eccccccCHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHH
Q 033150 65 LQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEV 105 (126)
Q Consensus 65 Lt~IyGIG~~~A~~IC~klGI~~~kv~~LteeQI~~L~~~I 105 (126)
|.+-.|++.....+.++..|+.......+++++...|.+.+
T Consensus 8 lAkel~~~~k~l~~~l~~~g~~k~~~s~l~~~~~~~l~~~~ 48 (49)
T 1nd9_A 8 LAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQTLIDHL 48 (49)
T ss_dssp HHHHHSSSHHHHHHHHHHHTSCCSSSSCEETTGGGHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHh
Confidence 44556889999999999999942234668888887776654
No 127
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=27.94 E-value=55 Score=30.14 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=35.9
Q ss_pred eEEEEeeccccccCHHHHHHHHHHh--CC--C-----cccc--CCCCHHHHHHHHHH
Q 033150 59 KRIEYSLQYIHGVGRTRARQILVDL--KM--E-----NKIT--KDMSEEELITIRDE 104 (126)
Q Consensus 59 K~V~~ALt~IyGIG~~~A~~IC~kl--GI--~-----~~kv--~~LteeQI~~L~~~ 104 (126)
..|+++|..|+|+|...+..|.+.= |- . -.++ +.++..+++.|.+.
T Consensus 829 ~~Ir~gl~~Ikgvg~~~~~~Iv~~R~~g~~f~s~~Df~~R~~~~~~~~~~le~Li~a 885 (910)
T 2hnh_A 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMS 885 (910)
T ss_dssp SCEECBGGGSTTCCHHHHHHHHHHHHTTCCCSSHHHHTTSSCSSSSCHHHHHHHHHT
T ss_pred CeeehhHHhcCCCCHHHHHHHHHHHhcCCCCCCHHHHHHhccccCCCHHHHHHHHHC
Confidence 3699999999999999999998665 32 1 1344 46899999998764
No 128
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=27.89 E-value=41 Score=20.25 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhh
Q 033150 92 DMSEEELITIRDEVSK 107 (126)
Q Consensus 92 ~LteeQI~~L~~~I~~ 107 (126)
.||++|+..|..+|..
T Consensus 67 ~ls~~ei~~l~~yi~~ 82 (85)
T 3cu4_A 67 MIPPADALKIGEYVVA 82 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999864
No 129
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=27.42 E-value=43 Score=20.11 Aligned_cols=17 Identities=12% Similarity=0.091 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
+.||++|+..|..+|..
T Consensus 67 ~~ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 67 GRLSPLQIEDVAAYVVD 83 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 56999999999999965
No 130
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=26.44 E-value=26 Score=23.65 Aligned_cols=34 Identities=6% Similarity=0.031 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCC-cccc--CCCCHHHHHHHHHHHhh
Q 033150 74 TRARQILVDLKME-NKIT--KDMSEEELITIRDEVSK 107 (126)
Q Consensus 74 ~~A~~IC~klGI~-~~kv--~~LteeQI~~L~~~I~~ 107 (126)
....++|++.|.. ...+ ++||+.|+..|...|++
T Consensus 28 ~kv~k~l~~yG~rvQ~SVFe~~lt~~~~~~L~~~L~~ 64 (103)
T 3oq2_A 28 RRIAKACQDYGQRVQYSVFECVVDPAQWAKLKHRLLS 64 (103)
T ss_dssp HHHHHHHGGGEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccceEEEEEEEcCHHHHHHHHHHHHH
Confidence 4567788888866 4444 89999999999999987
No 131
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=26.29 E-value=45 Score=20.84 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
+.||++|+..|..+|..
T Consensus 85 ~~ls~~ei~~l~~yl~~ 101 (103)
T 2zzs_A 85 SLLSDDDIANLAAYYSS 101 (103)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 68999999999999864
No 132
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=25.79 E-value=28 Score=25.72 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.2
Q ss_pred eeccccccCHHHHHHHHHHhC
Q 033150 64 SLQYIHGVGRTRARQILVDLK 84 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klG 84 (126)
.|..+.|||+.+|..|.+.+.
T Consensus 195 ~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 195 EISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHHHSTTCCHHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHHh
Confidence 488999999999999987653
No 133
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=25.53 E-value=32 Score=27.93 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=17.1
Q ss_pred ccccccCHHHHHHHHHHhC
Q 033150 66 QYIHGVGRTRARQILVDLK 84 (126)
Q Consensus 66 t~IyGIG~~~A~~IC~klG 84 (126)
..|.|||+++|.++.++.|
T Consensus 228 pgv~GiG~ktA~kli~~~~ 246 (352)
T 3qe9_Y 228 SSLRGIGLAKACKVLRLAN 246 (352)
T ss_dssp CCCTTCCHHHHHHHHHHCC
T ss_pred CCCCCeeHHHHHHHHHHhC
Confidence 3689999999999999985
No 134
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=25.36 E-value=53 Score=21.98 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCC--cccc--CCCCHHHHHHHHHHHhhc
Q 033150 73 RTRARQILVDLKME--NKIT--KDMSEEELITIRDEVSKY 108 (126)
Q Consensus 73 ~~~A~~IC~klGI~--~~kv--~~LteeQI~~L~~~I~~~ 108 (126)
+....++|++.|+. ...| ++||+.++..|...|++.
T Consensus 17 ~~kv~k~L~~yGl~rvQ~SVFe~~lt~~~~~~l~~~L~~~ 56 (101)
T 2ivy_A 17 RNRVAEFLKKKGLDRIQYSVFMGDLNSSRLKDVEAGLKII 56 (101)
T ss_dssp HHHHHHHHHHTTCEEEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhccccEEEEEcCHHHHHHHHHHHHHH
Confidence 35567789999955 4443 999999999999998873
No 135
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=25.03 E-value=27 Score=27.83 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=16.7
Q ss_pred cccccCHHHHHHHHHHhC
Q 033150 67 YIHGVGRTRARQILVDLK 84 (126)
Q Consensus 67 ~IyGIG~~~A~~IC~klG 84 (126)
.|.|||+++|.++.++.|
T Consensus 241 gv~GiG~ktA~kli~~~g 258 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHSK 258 (340)
T ss_dssp CSTTCCHHHHHHHHHTCS
T ss_pred CCCCccHHHHHHHHHHcC
Confidence 689999999999999986
No 136
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=25.02 E-value=50 Score=19.98 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 033150 91 KDMSEEELITIRDEVSKY 108 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~~ 108 (126)
..||++|+..|..+|...
T Consensus 56 ~~ls~~ei~~l~~yl~~~ 73 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSSL 73 (80)
T ss_dssp TTSCHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHC
Confidence 579999999999999763
No 137
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=24.94 E-value=84 Score=24.67 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=31.3
Q ss_pred ccCHHHHHHHHHHhCC-C--cc--ccCCCCHHHHHHHHHHHhh-cccccc
Q 033150 70 GVGRTRARQILVDLKM-E--NK--ITKDMSEEELITIRDEVSK-YMIEGD 113 (126)
Q Consensus 70 GIG~~~A~~IC~klGI-~--~~--kv~~LteeQI~~L~~~I~~-~~Ie~d 113 (126)
|.+....+..++..|+ + .. ....|++++.++|++.+++ -.+|+.
T Consensus 259 ~~~~~~~K~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~~~~ 308 (313)
T 3dz1_A 259 GVGLSVRKYVLKKRGLLSSSAQRKPGASLTDTAREEVDYLLSRLARVEGH 308 (313)
T ss_dssp THHHHHHHHHHHHTTSCSCCCCCSSCCCCCHHHHHHHHHHHHHC------
T ss_pred CCCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhccccccc
Confidence 4456778899999997 4 33 3699999999999999988 456653
No 138
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=24.89 E-value=48 Score=21.10 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHhh
Q 033150 92 DMSEEELITIRDEVSK 107 (126)
Q Consensus 92 ~LteeQI~~L~~~I~~ 107 (126)
.||++|+..|..+|.+
T Consensus 81 ~Lsd~ei~~l~~Yi~~ 96 (99)
T 3dp5_A 81 MIPPADALKIGEYVVA 96 (99)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999999999854
No 139
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=24.67 E-value=99 Score=23.67 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCccccCCCCHHHHHHHHHHHhhc
Q 033150 76 ARQILVDLKMENKITKDMSEEELITIRDEVSKY 108 (126)
Q Consensus 76 A~~IC~klGI~~~kv~~LteeQI~~L~~~I~~~ 108 (126)
...+++.+|++..+..+||-+|..+|.+.+++.
T Consensus 260 ~~~~l~~~~~~~~R~e~l~~~~f~~l~~~~~~~ 292 (299)
T 2h1r_A 260 CLDVLEHLDMCEKRSINLDENDFLKLLLEFNKK 292 (299)
T ss_dssp HHHHHHHTTCTTCBGGGCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCChhhCCHHHHHHHHHHHHhC
Confidence 356688899997799999999999999998763
No 140
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=24.60 E-value=34 Score=27.87 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=15.5
Q ss_pred ccccCHHHHHHHHHHhC
Q 033150 68 IHGVGRTRARQILVDLK 84 (126)
Q Consensus 68 IyGIG~~~A~~IC~klG 84 (126)
|.|||+.+|.+++++.|
T Consensus 237 IpGIG~KtA~kLl~~~g 253 (379)
T 1ul1_X 237 IRGIGPKRAVDLIQKHK 253 (379)
T ss_dssp CTTCCHHHHHHHHHHSS
T ss_pred CCCcCHHHHHHHHHHcC
Confidence 58999999999999876
No 141
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=24.60 E-value=39 Score=27.96 Aligned_cols=22 Identities=14% Similarity=0.449 Sum_probs=18.6
Q ss_pred eccccccCHHHHHHHHHHhCCCc
Q 033150 65 LQYIHGVGRTRARQILVDLKMEN 87 (126)
Q Consensus 65 Lt~IyGIG~~~A~~IC~klGI~~ 87 (126)
++++.|||+.++..+ +.+||.+
T Consensus 284 v~~l~GiG~~~~~~L-~~lGI~T 305 (459)
T 1t94_A 284 IRKVSGIGKVTEKML-KALGIIT 305 (459)
T ss_dssp GGGCTTSCHHHHHHH-HHTTCCB
T ss_pred HHhcCCcCHHHHHHH-HHcCCCc
Confidence 789999999888665 8999983
No 142
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=24.53 E-value=31 Score=27.83 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=18.6
Q ss_pred eeccccccCHHHHHHHHHHhC
Q 033150 64 SLQYIHGVGRTRARQILVDLK 84 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klG 84 (126)
.|+.+.|||+.+|.+|-+-+.
T Consensus 58 ~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 58 EAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH
Confidence 389999999999999998764
No 143
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=24.40 E-value=38 Score=30.24 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=30.7
Q ss_pred ccccccCHHHHHHHHHHhCCC-ccccCCCCHHHHHHH
Q 033150 66 QYIHGVGRTRARQILVDLKME-NKITKDMSEEELITI 101 (126)
Q Consensus 66 t~IyGIG~~~A~~IC~klGI~-~~kv~~LteeQI~~L 101 (126)
-.|.|+|++++.++.+..+|. -.-+..|+.+|+..|
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l 485 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTS
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcc
Confidence 578999999999999999998 555888888887654
No 144
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=24.23 E-value=51 Score=19.46 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhh
Q 033150 92 DMSEEELITIRDEVSK 107 (126)
Q Consensus 92 ~LteeQI~~L~~~I~~ 107 (126)
.||++|+..|..+|..
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 1cch_A 65 PVTEEEAKILAEWVLS 80 (82)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7999999999999864
No 145
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=23.47 E-value=50 Score=20.50 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
..||++|+..|..+|..
T Consensus 77 ~~ls~~ei~~l~~yl~~ 93 (105)
T 2ce0_A 77 PRLQDEEIKLLAEFVKF 93 (105)
T ss_dssp CCBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 58999999999999975
No 146
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=22.80 E-value=64 Score=30.40 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=32.7
Q ss_pred eEEEEeeccccccCHHHHHHHHHHh--C-C---C--ccccCCCCHHHHHHHHHH
Q 033150 59 KRIEYSLQYIHGVGRTRARQILVDL--K-M---E--NKITKDMSEEELITIRDE 104 (126)
Q Consensus 59 K~V~~ALt~IyGIG~~~A~~IC~kl--G-I---~--~~kv~~LteeQI~~L~~~ 104 (126)
..|+++|..|.|+|...|..|.+.= | + . -.|+ .++...++.|.+.
T Consensus 963 ~~Ir~gL~aIkGlG~~~a~~Iv~aR~~gpF~s~~Df~~R~-~v~k~~lE~Li~a 1015 (1041)
T 3f2b_A 963 NSLIPPFNAIPGLGTNVAQAIVRAREEGEFLSKEDLQQRG-KLSKTLLEYLESR 1015 (1041)
T ss_dssp TEEECCGGGSTTCCHHHHHHHHHHHHTSCCCSHHHHHHHH-TCCHHHHHHHHHT
T ss_pred CEEEEchHhhCCCCHHHHHHHHHHHhCCCCCCHHHHHHHH-CcCHHHHHHHHHC
Confidence 3799999999999999999998742 2 1 1 1233 4788888777653
No 147
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=22.78 E-value=16 Score=31.37 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=16.7
Q ss_pred EEeeccccccCHHHHHHHHHHhCCC
Q 033150 62 EYSLQYIHGVGRTRARQILVDLKME 86 (126)
Q Consensus 62 ~~ALt~IyGIG~~~A~~IC~klGI~ 86 (126)
+|-|..|.|||..+|-+|..++|+.
T Consensus 43 Py~l~~i~gigf~~aD~ia~~~g~~ 67 (574)
T 3e1s_A 43 LFTLTEVEGIGFLTADKLWQARGGA 67 (574)
T ss_dssp -CGGGTSSSCCHHHHHTTC------
T ss_pred CcccCCcCCCCHHHHHHHHHHcCCC
Confidence 4677889999999999999999997
No 148
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=22.60 E-value=1.2e+02 Score=23.86 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHhCCC--ccc--cCCCCHHHHHHHHHHHhhcccc
Q 033150 72 GRTRARQILVDLKME--NKI--TKDMSEEELITIRDEVSKYMIE 111 (126)
Q Consensus 72 G~~~A~~IC~klGI~--~~k--v~~LteeQI~~L~~~I~~~~Ie 111 (126)
++...+..++..|++ ..+ ...|++++.++|++.++++.++
T Consensus 254 ~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~ 297 (311)
T 3h5d_A 254 SPAPVKAILNYMGFEAGPTRLPLVPAPEEDVKRIIKVVVDGDYE 297 (311)
T ss_dssp TTHHHHHHHHHHTSCCCCCCTTCCCCCHHHHHHHHHHHSCCCCC
T ss_pred CHHHHHHHHHHCCCCCCCcCCCCCCCCHHHHHHHHHHHHHccch
Confidence 445688889999997 333 6999999999999999875443
No 149
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=22.54 E-value=58 Score=19.63 Aligned_cols=16 Identities=13% Similarity=0.005 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHhh
Q 033150 92 DMSEEELITIRDEVSK 107 (126)
Q Consensus 92 ~LteeQI~~L~~~I~~ 107 (126)
.||++|+..|..+|..
T Consensus 69 ~ls~~ei~~l~~yl~~ 84 (87)
T 2zon_G 69 AADEATLRAAVAYMMD 84 (87)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999864
No 150
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=22.48 E-value=1.3e+02 Score=19.49 Aligned_cols=37 Identities=5% Similarity=0.163 Sum_probs=25.8
Q ss_pred cCHHHHHHHHHHhCCC-cc-------------------ccCCCCHHHHHHHHHHHhh
Q 033150 71 VGRTRARQILVDLKME-NK-------------------ITKDMSEEELITIRDEVSK 107 (126)
Q Consensus 71 IG~~~A~~IC~klGI~-~~-------------------kv~~LteeQI~~L~~~I~~ 107 (126)
+......+||+.+|++ .. .+.+|++++...+..+++.
T Consensus 52 p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~i~~ 108 (126)
T 3ivp_A 52 PSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQLENKIDNFTDADLVIMESVADG 108 (126)
T ss_dssp CCHHHHHHHHHHHTCCSHHHHSCCCCCCCCHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHhCCCccccchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567788899999987 42 2356777777777777654
No 151
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=22.32 E-value=70 Score=22.59 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.0
Q ss_pred eEEEEeeccccccCHHHHHHHHHHhCCC
Q 033150 59 KRIEYSLQYIHGVGRTRARQILVDLKME 86 (126)
Q Consensus 59 K~V~~ALt~IyGIG~~~A~~IC~klGI~ 86 (126)
++..++|+...|=|+++..+.++.+|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~lg~~ 30 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADLGIN 30 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHcCCE
Confidence 3567999999999999998888888865
No 152
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=21.97 E-value=87 Score=21.03 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=21.0
Q ss_pred EEEEeeccccccCHHHH-HHHHHHhCCC
Q 033150 60 RIEYSLQYIHGVGRTRA-RQILVDLKME 86 (126)
Q Consensus 60 ~V~~ALt~IyGIG~~~A-~~IC~klGI~ 86 (126)
+..+.|+...|-|+++. ..+++.+|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 33 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWV 33 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 45789999999999985 5555678865
No 153
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=21.96 E-value=51 Score=20.15 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhh
Q 033150 91 KDMSEEELITIRDEVSK 107 (126)
Q Consensus 91 ~~LteeQI~~L~~~I~~ 107 (126)
+.||++|+..|..+|..
T Consensus 81 ~~ls~~ei~~l~~yl~s 97 (99)
T 1w2l_A 81 ASLSEREVAALIEFIKQ 97 (99)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 46999999999999864
No 154
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=20.73 E-value=63 Score=21.94 Aligned_cols=22 Identities=9% Similarity=0.299 Sum_probs=19.5
Q ss_pred eeccccccCHHHHHHHHHHhCCC
Q 033150 64 SLQYIHGVGRTRARQILVDLKME 86 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klGI~ 86 (126)
.++.+.|||+..+.++-+ -|++
T Consensus 19 ~V~evpGIG~~~~~~L~~-~Gf~ 40 (89)
T 1ci4_A 19 PVGSLAGIGEVLGKKLEE-RGFD 40 (89)
T ss_dssp CGGGSTTCCHHHHHHHHH-TTCC
T ss_pred CcccCCCcCHHHHHHHHH-cCcc
Confidence 578999999999999877 7888
No 155
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=20.65 E-value=71 Score=25.60 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=27.8
Q ss_pred eeccccccCHHHHHHHHHHhCCCc-cccCCCCHHHHHHH
Q 033150 64 SLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITI 101 (126)
Q Consensus 64 ALt~IyGIG~~~A~~IC~klGI~~-~kv~~LteeQI~~L 101 (126)
-++.+.|||+.++.++ +++||.+ .-+..++.+.+.+.
T Consensus 180 pv~~l~GiG~~~~~~L-~~~GI~Ti~dL~~~~~~~L~~~ 217 (362)
T 4f4y_A 180 DIDEIPGIGSVLARRL-NELGIQKLRDILSKNYNELEKI 217 (362)
T ss_dssp BSTTSTTCCSTTHHHH-HHTTCCBGGGGTTSCHHHHHHH
T ss_pred ChhhccCCCHHHHHHH-HHcCCChHHHHhcCCHHHHHHH
Confidence 4678999999999875 5799994 34677777776543
No 156
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=20.12 E-value=89 Score=21.35 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=25.0
Q ss_pred CCCeEEEEeeccccccCHHHHHHHHHHhCCC
Q 033150 56 PNNKRIEYSLQYIHGVGRTRARQILVDLKME 86 (126)
Q Consensus 56 p~nK~V~~ALt~IyGIG~~~A~~IC~klGI~ 86 (126)
+++++..++|+.-.|-|+++..+.+++.|+.
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~g~~ 34 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSWGYP 34 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHTTCC
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHCCCE
Confidence 3556778999999999999998888887754
Done!