BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033151
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Query: 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
ITCGQV+ SLAPCI ++R GG PP CCNG+R++N ARTTPDRQAACNCLKQ S+P
Sbjct: 2 ITCGQVSSSLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60
Query: 84 GINANVAAGLPRQCGVSIPYKISPNTDCS 112
G+N N AA LP +CGVSIPYKIS +T+C+
Sbjct: 61 GVNPNNAAALPGKCGVSIPYKISASTNCA 89
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 68/91 (74%)
Query: 23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
AI+CGQV ++APCI++ R G P CC+GVRSLN AARTT DR+AACNCLK A +
Sbjct: 1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 83 PGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
G+NA AA +P +CGVSIPY IS +TDCSR
Sbjct: 61 SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 68/91 (74%), Gaps = 2/91 (2%)
Query: 23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
AITCGQVT +LAPC+A+LR G P CC GV++L +ARTT DRQ AC CLK A +I
Sbjct: 1 AITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58
Query: 83 PGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
GIN AAGLP CGV+IPYKISP+TDCS+
Sbjct: 59 SGINLGKAAGLPSTCGVNIPYKISPSTDCSK 89
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Query: 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
ITCGQV ++ PC+ + R GG P CC+GVRSL AA TT DR+ ACNCLK A R I
Sbjct: 1 ITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 59
Query: 84 GINANVAAGLPRQCGVSIPYKISPNTDCSR 113
G+NA AA +P +CGVS+PY IS + DCSR
Sbjct: 60 GLNAGNAASIPSKCGVSVPYTISASIDCSR 89
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
AI+CG VT L+PC+ +L TGG P P CC GV+ L AA TTPDRQAACNCLK A SI
Sbjct: 1 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI 59
Query: 83 PGINANVAAGLPRQCGVSIPYKISPNTDCS 112
+N N AA LP +CGV+IPYKIS T+C+
Sbjct: 60 TKLNTNNAAALPGKCGVNIPYKISTTTNCN 89
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
Query: 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
+TCGQV G+LA CI FL+ GG PP CC GV+++ ++RTT DR+A C+CLK A ++
Sbjct: 1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59
Query: 84 GINANVAAGLPRQCGVSIPYKISPNTDCS 112
GIN N A LP +CGV+IPYKIS +T+C+
Sbjct: 60 GINPNNAEALPGKCGVNIPYKISTSTNCN 88
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 92.0 bits (227), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
+ CGQV + PC+ +++ GG P CCNGVR L+ A+++ DRQ CNCLK R I
Sbjct: 1 LNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 84 GINANVAAGLPRQCGVSIPYKISPNTDCSR 113
+N N AA +P +C V++PY ISP+ DCSR
Sbjct: 60 NLNLNNAASIPSKCNVNVPYTISPDIDCSR 89
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
+ CGQV + PC+ +++ GG P CCNGVR L+ A+++ DRQ CNCLK R I
Sbjct: 1 LNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 84 GINANVAAGLPRQCGVSIPYKISPNTDCSR 113
+N N AA +P +C V++PY ISP+ DCSR
Sbjct: 60 NLNLNNAASIPSKCNVNVPYTISPDIDCSR 89
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer Protein
Length = 90
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
I CG V + PC+++++ GG P CC+GV++L+ AR+ DRQ+ACNCLK R I
Sbjct: 1 IDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 84 GINANVAAGLPRQCGVSIPYKISPNTDCSR 113
+N + A +P +CGV++PY IS N DCSR
Sbjct: 60 NLNEDNARSIPPKCGVNLPYTISLNIDCSR 89
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 25 TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG 84
CG V + PC+++++ GG P CC+GV++L+ AR+ DRQ+ACNCLK R I
Sbjct: 2 DCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 85 INANVAAGLPRQCGVSIPYKISPNTDCSR 113
+N + A +P +CGV++PY IS N DCSR
Sbjct: 61 LNEDNARSIPPKCGVNLPYTISLNIDCSR 89
>pdb|3V98|A Chain A, S663d Stable-5-Lox
pdb|3V98|B Chain B, S663d Stable-5-Lox
pdb|3V99|A Chain A, S663d Stable-5-Lox In Complex With Arachidonic Acid
pdb|3V99|B Chain B, S663d Stable-5-Lox In Complex With Arachidonic Acid
Length = 691
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 48 PPPCCNGVRSLNGAARTTPDRQAAC 72
PPP GV ++ T PDR +C
Sbjct: 592 PPPTAKGVVTIEQIVDTLPDRGRSC 616
>pdb|3V92|B Chain B, S663a Stable-5-Lox
pdb|3V92|A Chain A, S663a Stable-5-Lox
Length = 691
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 48 PPPCCNGVRSLNGAARTTPDRQAAC 72
PPP GV ++ T PDR +C
Sbjct: 592 PPPTAKGVVTIEQIVDTLPDRGRSC 616
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase
pdb|3O8Y|B Chain B, Stable-5-Lipoxygenase
Length = 691
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 48 PPPCCNGVRSLNGAARTTPDRQAAC 72
PPP GV ++ T PDR +C
Sbjct: 592 PPPTAKGVVTIEQIVDTLPDRGRSC 616
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,126,200
Number of Sequences: 62578
Number of extensions: 104467
Number of successful extensions: 236
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 14
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)