Query 033151
Match_columns 126
No_of_seqs 125 out of 853
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 10:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.9 6.9E-27 1.5E-31 155.5 4.2 89 24-112 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.5 3.6E-15 7.9E-20 95.9 3.0 67 26-102 1-69 (73)
3 cd00010 AAI_LTSS AAI_LTSS: Alp 99.4 9.8E-14 2.1E-18 86.2 2.1 62 33-99 1-63 (63)
4 PF14368 LTP_2: Probable lipid 99.2 8.2E-13 1.8E-17 87.7 -0.5 69 23-103 19-93 (96)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.2 1.3E-11 2.8E-16 78.2 2.7 58 31-102 4-64 (66)
6 smart00499 AAI Plant lipid tra 98.9 6.2E-10 1.4E-14 70.2 3.3 69 26-103 1-76 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.8 1.2E-10 2.5E-15 76.8 -4.7 68 26-103 8-87 (90)
8 PF14547 Hydrophob_seed: Hydro 91.9 0.1 2.2E-06 34.5 1.6 77 26-112 2-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 89.6 0.36 7.8E-06 31.9 2.6 72 25-102 3-80 (85)
10 PRK13733 conjugal transfer pro 32.2 61 0.0013 24.2 3.2 28 1-28 1-30 (171)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.93 E-value=6.9e-27 Score=155.52 Aligned_cols=89 Identities=66% Similarity=1.213 Sum_probs=83.0
Q ss_pred CCCcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhhchhhcCCCCCC
Q 033151 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY 103 (126)
Q Consensus 24 ~~C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~pf 103 (126)
++|.++...|.||++|++|++.+|+++||++++++++.++|+.|++.+|+|+++.+.++++||.+|+.+||++||++++|
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~ 80 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY 80 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence 36899999999999999988778999999999999999999999999999998877777669999999999999999999
Q ss_pred CCCCCcCCC
Q 033151 104 KISPNTDCS 112 (126)
Q Consensus 104 ~is~~~dC~ 112 (126)
+|++++||+
T Consensus 81 ~i~~~~dC~ 89 (89)
T cd01960 81 PISPSTDCS 89 (89)
T ss_pred CCCCCCCCC
Confidence 999999996
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.54 E-value=3.6e-15 Score=95.91 Aligned_cols=67 Identities=25% Similarity=0.570 Sum_probs=53.8
Q ss_pred CcccccCccccHHHHhcCC--CCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhhchhhcCCCCC
Q 033151 26 CGQVTGSLAPCIAFLRTGG--RFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIP 102 (126)
Q Consensus 26 C~~v~~~L~pCl~yl~~~~--~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p 102 (126)
|+.....|.||++|+++++ ..|+..||+++|+++ ++ |+|.+.....++.||.+++.+||+.||+++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~--------~~--C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p 69 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRAD--------LP--CLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP 69 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC--------cC--CEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence 4554577899999999876 368999999999742 33 9998655544556999999999999999877
No 3
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.40 E-value=9.8e-14 Score=86.21 Aligned_cols=62 Identities=39% Similarity=0.852 Sum_probs=48.6
Q ss_pred ccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCC-CHHHHhhchhhcCC
Q 033151 33 LAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGI-NANVAAGLPRQCGV 99 (126)
Q Consensus 33 L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~i-n~~~a~~LP~~Cgv 99 (126)
|.||++|+++++..|+++||++++++++. |++..|.++++......++ |.+++.+||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 57999999988668999999999999753 4455555567655443344 79999999999996
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.24 E-value=8.2e-13 Score=87.74 Aligned_cols=69 Identities=36% Similarity=0.831 Sum_probs=42.7
Q ss_pred CCCCcccccCcccc---HHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--ecccc-cCCCCCCHHHHhhchhh
Q 033151 23 AITCGQVTGSLAPC---IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAY-RSIPGINANVAAGLPRQ 96 (126)
Q Consensus 23 ~~~C~~v~~~L~pC---l~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~C--l~~~~-~~~~~in~~~a~~LP~~ 96 (126)
..+|.+ .|.+| +.|+.++. .|+++||+++|++.+. | ..|+| +++.. ..+ +||.+|+.+||++
T Consensus 19 ~~~c~~---~l~~c~~~~~~~~~~~-~Ps~~CC~~l~~~~~~-----~--~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~ 86 (96)
T PF14368_consen 19 CCSCAN---SLLPCCPCLCYVTGGP-APSAACCSALKSVVQA-----D--PPCLCQLLNSPGAPGF-GINVTRALALPAA 86 (96)
T ss_dssp TTB-HC---CCCHH--HHHHHCC------HHHHHHHCC---------H--CCHHHCCCC-CCHCHH-CCTCHHHHHHHHH
T ss_pred cchhHH---HHhccccchhccCCCC-CCCHHHHHHHHHhccC-----C--CCCHHHhcCccccccC-CcCHHHHHHHHHH
Confidence 456744 46676 78888554 7999999999998531 2 44666 44443 334 7999999999999
Q ss_pred cCCCCCC
Q 033151 97 CGVSIPY 103 (126)
Q Consensus 97 Cgv~~pf 103 (126)
||++.+.
T Consensus 87 Cg~~~~~ 93 (96)
T PF14368_consen 87 CGVPVPP 93 (96)
T ss_dssp CTSS-S-
T ss_pred cCCCCCC
Confidence 9999874
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.18 E-value=1.3e-11 Score=78.18 Aligned_cols=58 Identities=29% Similarity=0.689 Sum_probs=47.0
Q ss_pred cCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceee--ccc-ccCCCCCCHHHHhhchhhcCCCCC
Q 033151 31 GSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCL--KQA-YRSIPGINANVAAGLPRQCGVSIP 102 (126)
Q Consensus 31 ~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl--~~~-~~~~~~in~~~a~~LP~~Cgv~~p 102 (126)
..|.+|++|++++. .||++||+.+|+ +..|+|. ++. +.. .||.++|.+||++||+++|
T Consensus 4 ~~L~~C~~ai~~~~-~Ps~~CC~~Lk~-----------~~~CLC~y~~~p~l~~--~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGGS-PPSAACCAKLKE-----------QQSCLCQYAKNPSLKQ--YVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCCC-CCCHHHHHHHhc-----------CCCCeeeeecCccHHh--hcCcHHHHHHHHHcCCCCC
Confidence 37999999999775 799999999997 2369994 332 233 3899999999999999876
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=98.95 E-value=6.2e-10 Score=70.22 Aligned_cols=69 Identities=48% Similarity=0.936 Sum_probs=52.2
Q ss_pred CcccccCccccHHHHhcC--CCCCCcccccchhhhhcccCCCcCCcccceeeccc--ccCCCC---CCHHHHhhchhhcC
Q 033151 26 CGQVTGSLAPCIAFLRTG--GRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQA--YRSIPG---INANVAAGLPRQCG 98 (126)
Q Consensus 26 C~~v~~~L~pCl~yl~~~--~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~--~~~~~~---in~~~a~~LP~~Cg 98 (126)
|..+...+.+|.+|++++ ...|+.+||++++.+. ...|+|.... ...+.. ++..++.+||+.||
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~ 71 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG 71 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence 556666777999999987 4578899999999984 2459996432 222211 58999999999999
Q ss_pred CCCCC
Q 033151 99 VSIPY 103 (126)
Q Consensus 99 v~~pf 103 (126)
+..++
T Consensus 72 ~~~~~ 76 (79)
T smart00499 72 VPPPY 76 (79)
T ss_pred CCCCC
Confidence 99875
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.78 E-value=1.2e-10 Score=76.79 Aligned_cols=68 Identities=40% Similarity=0.866 Sum_probs=51.7
Q ss_pred CcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--ecccccCC----------CCCCHHHHhhc
Q 033151 26 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAYRSI----------PGINANVAAGL 93 (126)
Q Consensus 26 C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~C--l~~~~~~~----------~~in~~~a~~L 93 (126)
|......+.+|.+|++++...|+..||++|+++.. + |+| ++...... .+++..+|..|
T Consensus 8 ~~~~~~~l~~c~~~~~~~~~~~~~~CC~~L~~l~~--------~--C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~L 77 (90)
T PF00234_consen 8 CSPVQVRLSPCLPYLQGGCQQPSQQCCQQLRQLDP--------Q--CRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNL 77 (90)
T ss_dssp CGTTSSHHHGGHHHHTTSSSHHHHHHHHHHHHHHH--------H--HHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHH
T ss_pred hhhccccccccHHHHhcccccchHHHhHHHHHHhH--------H--hhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 33333458999999998765799999999999853 3 666 55443321 15889999999
Q ss_pred hhhcCCCCCC
Q 033151 94 PRQCGVSIPY 103 (126)
Q Consensus 94 P~~Cgv~~pf 103 (126)
|+.||+.++|
T Consensus 78 P~~C~v~~~~ 87 (90)
T PF00234_consen 78 PSMCNVSPPY 87 (90)
T ss_dssp HHHTTSSSSS
T ss_pred HHHCCCCCCC
Confidence 9999999987
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=91.89 E-value=0.1 Score=34.53 Aligned_cols=77 Identities=26% Similarity=0.515 Sum_probs=46.2
Q ss_pred CcccccCccccHHHHhc----CCCCCCcccccchhhhhcccCCCcCCcccceee--cccccCCCCCCHH-HHhhchhhcC
Q 033151 26 CGQVTGSLAPCIAFLRT----GGRFPPPPCCNGVRSLNGAARTTPDRQAACNCL--KQAYRSIPGINAN-VAAGLPRQCG 98 (126)
Q Consensus 26 C~~v~~~L~pCl~yl~~----~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl--~~~~~~~~~in~~-~a~~LP~~Cg 98 (126)
|......|.-|.+.+.. .+..+..+||.-++.+.+. --+.|+|. |...-++-++|.+ ....|-..||
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CG 75 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACG 75 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhC
Confidence 44333467788888721 1124678999999998653 12579994 4332221123322 4556777899
Q ss_pred CCCCCCCCCCcCCC
Q 033151 99 VSIPYKISPNTDCS 112 (126)
Q Consensus 99 v~~pf~is~~~dC~ 112 (126)
...| ++|.|.
T Consensus 76 k~~p----~gf~C~ 85 (85)
T PF14547_consen 76 KTVP----SGFTCP 85 (85)
T ss_pred CcCc----CCCcCC
Confidence 9877 566663
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=89.64 E-value=0.36 Score=31.95 Aligned_cols=72 Identities=26% Similarity=0.470 Sum_probs=42.1
Q ss_pred CCcccccCccccHHHHhcC----CCCCCcccccchhhhhcccCCCcCCcccceeecccccCCC-CCCHH-HHhhchhhcC
Q 033151 25 TCGQVTGSLAPCIAFLRTG----GRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP-GINAN-VAAGLPRQCG 98 (126)
Q Consensus 25 ~C~~v~~~L~pCl~yl~~~----~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~-~in~~-~a~~LP~~Cg 98 (126)
.|......|.-|.+-+..- +..|..+||.-++.+.+. --+.|+|..-.++-++ .+|.+ +..-|-..||
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl------dAA~CLCtaikan~lgi~~~~pv~l~llln~CG 76 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL------DAAVCLCTAIKANILGISINIPVALSLLLNSCG 76 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh------heeeeeeeeeeccccCcccccChhHHHHHHHHc
Confidence 3554444567787777431 225668999999988653 1257999532222221 23333 3445556799
Q ss_pred CCCC
Q 033151 99 VSIP 102 (126)
Q Consensus 99 v~~p 102 (126)
...|
T Consensus 77 k~~P 80 (85)
T cd01958 77 RNVP 80 (85)
T ss_pred CcCC
Confidence 9877
No 10
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=32.17 E-value=61 Score=24.15 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=14.6
Q ss_pred CchhHHHHHHHHHHHHh-cCccC-CCCCcc
Q 033151 1 MAALKLVCALLLCILVT-APVTN-AITCGQ 28 (126)
Q Consensus 1 M~~~~~~~~~~~~~~l~-~~~a~-~~~C~~ 28 (126)
||.++++.++..+|+|. .+.-+ ..+|+.
T Consensus 1 MK~~~~li~l~~~LlL~GCAg~~s~f~C~~ 30 (171)
T PRK13733 1 MKQISLLIPLLGTLLLSGCAGTNSEFECNA 30 (171)
T ss_pred CchhhHHHHHHHHHHhccccCCCCCCCCCC
Confidence 88666555544445554 23222 467774
Done!