Query 033152
Match_columns 126
No_of_seqs 103 out of 709
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:10:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_J 50S ribosomal protein L 100.0 7.4E-54 2.5E-58 321.0 10.8 126 1-126 1-141 (141)
2 3u5e_V L17A, YL32, 60S ribosom 100.0 4.1E-51 1.4E-55 304.9 11.5 122 5-126 2-137 (137)
3 1vq8_K 50S ribosomal protein L 100.0 2.8E-49 9.5E-54 293.5 11.2 117 10-126 2-132 (132)
4 3v2d_O 50S ribosomal protein L 100.0 1.2E-46 4.2E-51 276.2 11.5 104 19-126 1-122 (122)
5 3bbo_M Ribosomal protein L14; 100.0 2.3E-46 8E-51 274.4 9.3 104 19-126 1-121 (121)
6 1whi_A Ribosomal protein L14; 100.0 4.9E-46 1.7E-50 273.0 10.3 104 19-126 1-122 (122)
7 3r8s_K 50S ribosomal protein L 100.0 9.9E-46 3.4E-50 271.4 10.5 103 19-125 1-122 (122)
8 2ftc_K 39S ribosomal protein L 67.2 8.4 0.00029 26.6 4.4 34 53-86 2-35 (98)
9 3r8s_P 50S ribosomal protein L 56.3 16 0.00054 25.9 4.3 35 52-86 16-51 (114)
10 3v2d_T 50S ribosomal protein L 55.7 19 0.00065 26.6 4.9 35 52-86 19-54 (146)
11 2o5u_A Thioesterase; putative 41.4 41 0.0014 22.3 4.5 69 54-122 76-147 (148)
12 2w3x_A CALE7; hydrolase, hotdo 40.8 71 0.0024 20.8 5.6 67 53-120 69-142 (147)
13 2cye_A TTHA1846, putative thio 40.7 61 0.0021 20.7 5.2 64 54-118 65-128 (133)
14 2oaf_A Thioesterase superfamil 37.7 56 0.0019 21.7 4.8 65 54-118 83-148 (151)
15 1s5u_A Protein YBGC; structura 37.3 51 0.0018 21.1 4.4 64 54-117 71-136 (138)
16 2oiw_A Putative 4-hydroxybenzo 36.8 58 0.002 21.0 4.6 66 54-119 65-131 (136)
17 3qr8_A GPV, baseplate assembly 36.7 66 0.0022 23.9 5.4 83 9-99 7-113 (211)
18 2zjr_M 50S ribosomal protein L 36.2 23 0.00077 26.7 2.7 35 52-86 24-59 (166)
19 2gf6_A Conserved hypothetical 35.7 82 0.0028 20.0 5.2 61 54-115 70-132 (135)
20 3ck1_A Putative thioesterase; 32.6 88 0.003 20.4 5.0 65 54-118 71-137 (150)
21 2nuj_A Thioesterase superfamil 27.9 1.3E+02 0.0045 20.2 5.4 66 54-119 88-157 (163)
22 1xe1_A Hypothetical protein PF 26.5 1E+02 0.0035 21.6 4.6 53 18-78 58-112 (116)
23 2xem_A DYNE7, TEBC; biosynthet 26.2 1.4E+02 0.0049 19.7 5.9 67 54-121 74-148 (150)
24 3bbo_R Ribosomal protein L19; 25.9 9.8 0.00033 30.2 -1.0 35 52-86 140-174 (233)
25 1qzg_A Protection of telomeres 23.5 1.2E+02 0.0041 22.9 4.8 39 23-64 68-110 (187)
26 2hx5_A Hypothetical protein; t 22.5 97 0.0033 20.5 3.8 63 54-117 79-143 (152)
27 1xjv_A Protection of telomeres 22.4 1.3E+02 0.0044 23.3 4.9 40 21-64 37-77 (294)
28 2pzh_A Hypothetical protein HP 22.0 1.6E+02 0.0054 18.6 5.7 62 54-116 61-133 (135)
29 2bm3_A Type 2 cohesin, scaffol 21.6 49 0.0017 24.9 2.2 16 53-68 16-31 (166)
30 1lo7_A 4-hydroxybenzoyl-COA th 21.3 1.7E+02 0.0057 18.6 6.0 62 54-115 71-140 (141)
31 3bwz_A Cellulosomal scaffoldin 21.2 51 0.0017 25.1 2.2 15 53-67 14-28 (181)
32 3kcp_B Cellulosome anchoring p 21.2 50 0.0017 25.2 2.2 16 53-68 28-43 (187)
33 1l0s_A Thermal hysteresis prot 21.0 30 0.001 23.4 0.8 18 90-107 41-61 (90)
34 2ali_A Hypothetical protein PA 20.6 1.9E+02 0.0063 19.5 5.0 63 54-116 90-156 (158)
No 1
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=7.4e-54 Score=320.97 Aligned_cols=126 Identities=52% Similarity=0.812 Sum_probs=114.0
Q ss_pred CCCCCCCCCcc-cccccccCcccccEEEEecCCCcceEEEEEEecccccccCCCCCccCCEEEEEEeeccCCcccceecE
Q 033152 1 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPA 79 (126)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~vGD~I~vsVKk~~~~~Kg~v~~A 79 (126)
||+||+||..+ .++++++|||.+|+|+|+|||||++++||+|++++++++|+++|++||+|++|||++.|+.|+|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~kg~V~kA 80 (141)
T 3j21_J 1 MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRA 80 (141)
T ss_dssp ---------CCCCCSBCCCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTTTTCEEEE
T ss_pred CCccccCCccccccccccceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCCcCceEEE
Confidence 89999999998 89999999999999999999999999999999987777888999999999999999999999999999
Q ss_pred EEEeeecceEecCCeEEEEc--------------ceEEecchhHHHHhhchhhhhcccccC
Q 033152 80 VIVRQRKPWRRKDGVFMYFE--------------GSAITGPIGKECADLWPRIASAANAIV 126 (126)
Q Consensus 80 vIVRtkk~~~R~dG~~i~F~--------------GTRI~GpV~~Elr~k~~Ki~sLA~~vv 126 (126)
|||||+++++|+||++|+|| |||||||||+|||++|+||+|||++||
T Consensus 81 VIVRtkk~~rR~dGs~i~FddNA~VLin~~g~p~GTRI~GPVarElr~~~~KI~SlA~~iv 141 (141)
T 3j21_J 81 VIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV 141 (141)
T ss_dssp EEEECSSCEECTTSCEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHHHCHHHHHHCSEEC
T ss_pred EEEEeCCccCCCCCcEEEcCCcEEEEECCCCCEeeeEEEccccHHHHhhchHHhhcccccC
Confidence 99999999999999999999 999999999999999999999999986
No 2
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=100.00 E-value=4.1e-51 Score=304.92 Aligned_cols=122 Identities=73% Similarity=1.270 Sum_probs=119.1
Q ss_pred CCCCCcccccccccCcccccEEEEecCCCcceEEEEEEecccccccCCCCCccCCEEEEEEeeccCCcccceecEEEEee
Q 033152 5 GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQ 84 (126)
Q Consensus 5 ~~~~~~~~~~~~~~mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~vGD~I~vsVKk~~~~~Kg~v~~AvIVRt 84 (126)
+|||.+..++++|++||.+|+|+|||||||++++||++++++++++|+++|++||+|++|||++.|+.|+|+++||||||
T Consensus 2 ~~~~~~~~~~~~~~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~k~~V~~AVIVRt 81 (137)
T 3u5e_V 2 SGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQ 81 (137)
T ss_dssp CCSSCCSCCCCCCCCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTTTTSCEEEEEEEC
T ss_pred CccccCcceeeecccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCCCCcEEEEEEEEe
Confidence 37899999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred ecceEecCCeEEEEc--------------ceEEecchhHHHHhhchhhhhcccccC
Q 033152 85 RKPWRRKDGVFMYFE--------------GSAITGPIGKECADLWPRIASAANAIV 126 (126)
Q Consensus 85 kk~~~R~dG~~i~F~--------------GTRI~GpV~~Elr~k~~Ki~sLA~~vv 126 (126)
+++++|+||++|+|| |||||||||+|||++|+||+|||++|+
T Consensus 82 kk~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~~~KI~SlA~~vv 137 (137)
T 3u5e_V 82 AKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV 137 (137)
T ss_dssp CSCEECTTSCEEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTTCHHHHHTCSSBC
T ss_pred ccccCcCCCeEEEcCCceEEEECCCCCEeeeEEEcchhHHHHHHhhHHHhcccccC
Confidence 999999999999999 999999999999999999999999986
No 3
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=100.00 E-value=2.8e-49 Score=293.53 Aligned_cols=117 Identities=46% Similarity=0.761 Sum_probs=112.2
Q ss_pred cccccccccCcccccEEEEecCCCcceEEEEEEecccccccCCCCCccCCEEEEEEeeccCCcccceecEEEEeeecceE
Q 033152 10 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWR 89 (126)
Q Consensus 10 ~~~~~~~~~mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~vGD~I~vsVKk~~~~~Kg~v~~AvIVRtkk~~~ 89 (126)
.+.+++++.|||.+|+|+|+|||||++++||++++++++++|+|+|++||+|++|||++.|+.|+|+++||||||+++++
T Consensus 2 ~~~~~~~~~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AVIVRtkk~~r 81 (132)
T 1vq8_K 2 EALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIR 81 (132)
T ss_dssp CCCSSEECCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECSSCEE
T ss_pred CCcccccccccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCCCCcEEEEEEEEcCCCcC
Confidence 35688999999999999999999999999999999777778888899999999999999999999999999999999999
Q ss_pred ecCCeEEEEc--------------ceEEecchhHHHHhhchhhhhcccccC
Q 033152 90 RKDGVFMYFE--------------GSAITGPIGKECADLWPRIASAANAIV 126 (126)
Q Consensus 90 R~dG~~i~F~--------------GTRI~GpV~~Elr~k~~Ki~sLA~~vv 126 (126)
|+||++|+|| |||||||||+|||++|+||+|||++++
T Consensus 82 R~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~~~KI~SlA~~v~ 132 (132)
T 1vq8_K 82 RPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV 132 (132)
T ss_dssp CTTSCEEEESSCEEEEECTTSCBSSSCBCSEECHHHHHHSHHHHTTCSEEC
T ss_pred cCCCcEEEeCCceEEEECCCCCEeEEEEEcCcCHHHHhcccHhhhcccccC
Confidence 9999999999 999999999999999999999999985
No 4
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=100.00 E-value=1.2e-46 Score=276.20 Aligned_cols=104 Identities=32% Similarity=0.498 Sum_probs=100.0
Q ss_pred CcccccEEEEecCCCcceEEEEEEecccccccCCCCCccCCEEEEEEeeccCCc---ccceecEEEEeeecceEecCCeE
Q 033152 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVF 95 (126)
Q Consensus 19 mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~vGD~I~vsVKk~~~~~---Kg~v~~AvIVRtkk~~~R~dG~~ 95 (126)
|||.+|+|+|||||||++++||++++++++ ++|++||+|++|||++.|+. |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~r----r~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~ 76 (122)
T 3v2d_O 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNA----KYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSA 76 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEEESTTTC----CCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCCCCEEEEeeCCCCcEEEEEEEeCCCCC----cccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcE
Confidence 999999999999999999999999998766 59999999999999999987 68999999999999999999999
Q ss_pred EEEc--------------ceEEecchhHHHHhh-chhhhhcccccC
Q 033152 96 MYFE--------------GSAITGPIGKECADL-WPRIASAANAIV 126 (126)
Q Consensus 96 i~F~--------------GTRI~GpV~~Elr~k-~~Ki~sLA~~vv 126 (126)
++|| |||||||||+|||++ |+||+|||++++
T Consensus 77 i~FddNa~Vlin~~~~p~GTrI~GpVarElr~~~~~KI~SlA~~v~ 122 (122)
T 3v2d_O 77 IRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL 122 (122)
T ss_dssp EEESSCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHSSCBC
T ss_pred EEcCCcEEEEECCCCCEeeeEEEccchHHHhhCCCchhhccccccC
Confidence 9999 999999999999996 999999999985
No 5
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.3e-46 Score=274.37 Aligned_cols=104 Identities=32% Similarity=0.574 Sum_probs=100.0
Q ss_pred CcccccEEEEecCCCcceEEEEEEecccccccCCCCCccCCEEEEEEeeccCCc---ccceecEEEEeeecceEecCCeE
Q 033152 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVF 95 (126)
Q Consensus 19 mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~vGD~I~vsVKk~~~~~---Kg~v~~AvIVRtkk~~~R~dG~~ 95 (126)
|||.+|+|+|+|||||+.++||++++++.+ ++|++||+|++|||++.|+. |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~Vlgg~~~----r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~ 76 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGARELMCIRIIGASNR----RYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMI 76 (121)
T ss_dssp CCCSSCEEEECSSSSEEEEEEEEECSSSCC----CCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCE
T ss_pred CCCccCEEEEeeCCCCcEEEEEEEcCCCCc----cccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCE
Confidence 999999999999999999999999997655 58999999999999999987 79999999999999999999999
Q ss_pred EEEc--------------ceEEecchhHHHHhhchhhhhcccccC
Q 033152 96 MYFE--------------GSAITGPIGKECADLWPRIASAANAIV 126 (126)
Q Consensus 96 i~F~--------------GTRI~GpV~~Elr~k~~Ki~sLA~~vv 126 (126)
|+|| |||||||||+|||++|+||+|||++++
T Consensus 77 i~FddNa~Vlin~~g~p~GTrI~GPVarElr~~~~KI~SlA~~vl 121 (121)
T 3bbo_M 77 IRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPEVL 121 (121)
T ss_dssp ECCSSCEEEECCTTSSCSSSCCCSCCCGGGTTTCHHHHHHSSCCC
T ss_pred EEeCCceEEEECCCCCEeEeEEEcCcCHHHHhcchHhhhccchhC
Confidence 9999 999999999999999999999999985
No 6
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=100.00 E-value=4.9e-46 Score=272.97 Aligned_cols=104 Identities=37% Similarity=0.618 Sum_probs=99.1
Q ss_pred CcccccEEEEecCCCcceEEEEEEecccccccCCCCCccCCEEEEEEeeccCCc---ccceecEEEEeeecceEecCCeE
Q 033152 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVF 95 (126)
Q Consensus 19 mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~vGD~I~vsVKk~~~~~---Kg~v~~AvIVRtkk~~~R~dG~~ 95 (126)
|||.+|+|+|+|||||++++||++++++.+ ++|++||+|++|||++.|+. |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~vlgg~~~----r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~ 76 (122)
T 1whi_A 1 MIQQESRLKVADNSGAREVLVIKVLGGSGR----RYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSY 76 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEECSSTTC----CCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCccCEEEEeECCCCcEEEEEEEcCCCcc----cccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCE
Confidence 999999999999999999999999997655 58999999999999999987 59999999999999999999999
Q ss_pred EEEc--------------ceEEecchhHHHHh-hchhhhhcccccC
Q 033152 96 MYFE--------------GSAITGPIGKECAD-LWPRIASAANAIV 126 (126)
Q Consensus 96 i~F~--------------GTRI~GpV~~Elr~-k~~Ki~sLA~~vv 126 (126)
++|| |||||||||+|||+ +|+||+|||++++
T Consensus 77 i~FddNa~Vlin~~g~p~GTrI~GPVarElr~k~~~KI~SlA~~vl 122 (122)
T 1whi_A 77 IRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI 122 (122)
T ss_dssp ECCSSCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHCSCBC
T ss_pred EEeCCceEEEECCCCCEeeeEEEccchHHHhhcCCcchhhcccccC
Confidence 9999 99999999999999 5999999999986
No 7
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=100.00 E-value=9.9e-46 Score=271.38 Aligned_cols=103 Identities=35% Similarity=0.526 Sum_probs=98.5
Q ss_pred CcccccEEEEecCCCcceEEEEEEecccccccCCCCCccCCEEEEEEeeccCCc---ccceecEEEEeeecceEecCCeE
Q 033152 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVF 95 (126)
Q Consensus 19 mIq~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a~vGD~I~vsVKk~~~~~---Kg~v~~AvIVRtkk~~~R~dG~~ 95 (126)
|||.+|+|+|||||||++++||++++++++ ++|++||+|++|||++.|+. |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r----~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~ 76 (122)
T 3r8s_K 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHR----RYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSV 76 (122)
T ss_dssp CBCTTCEEEECBTTSEEEEEEEEECSSSSC----CCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCCCCEEEEccCCCCceEEEEEEeCCCCC----CcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcE
Confidence 999999999999999999999999998766 59999999999999999987 68999999999999999999999
Q ss_pred EEEc---------------ceEEecchhHHHHh-hchhhhhccccc
Q 033152 96 MYFE---------------GSAITGPIGKECAD-LWPRIASAANAI 125 (126)
Q Consensus 96 i~F~---------------GTRI~GpV~~Elr~-k~~Ki~sLA~~v 125 (126)
|+|| |||||||||+|||+ +|+||+|||+++
T Consensus 77 i~FddNa~Vlin~~~g~p~GTrI~GpVarElR~~~~~KI~SlA~~v 122 (122)
T 3r8s_K 77 IRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV 122 (122)
T ss_dssp EEESSCEEEEEETTTEEESCSCBCSCCCGGGGSGGGHHHHHSSSCC
T ss_pred EEcCCceEEEEeCCCCCEeeeEEEccccHHHhHcCCchhhccccCC
Confidence 9999 99999999999986 599999999985
No 8
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=67.19 E-value=8.4 Score=26.62 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=26.7
Q ss_pred CCCccCCEEEEEEeeccCCcccceecEEEEeeec
Q 033152 53 PSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRK 86 (126)
Q Consensus 53 ~~a~vGD~I~vsVKk~~~~~Kg~v~~AvIVRtkk 86 (126)
|.-.+||+|.|.++-.-.+.+-|.|.++|+.-+.
T Consensus 2 P~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~ 35 (98)
T 2ftc_K 2 PEFYVGSILRVTTADPYASGKISQFLGICIQRSG 35 (98)
T ss_pred CccCCCCEEEEEEEECCCceEeeeEEEEEEEEEC
Confidence 3456999999999877444577999999998664
No 9
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=56.31 E-value=16 Score=25.91 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=28.1
Q ss_pred CCCCccCCEEEEEEeeccC-CcccceecEEEEeeec
Q 033152 52 LPSACVGDMVMATVKKGKP-DLRKKVMPAVIVRQRK 86 (126)
Q Consensus 52 ~~~a~vGD~I~vsVKk~~~-~~Kg~v~~AvIVRtkk 86 (126)
.|.-.+||+|.|.++-... +.+-|.|.++|+.-+.
T Consensus 16 iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~ 51 (114)
T 3r8s_P 16 VPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRN 51 (114)
T ss_dssp CCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred CCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEEC
Confidence 4778999999999976553 3467999999998764
No 10
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=55.67 E-value=19 Score=26.58 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=28.2
Q ss_pred CCCCccCCEEEEEEeeccCC-cccceecEEEEeeec
Q 033152 52 LPSACVGDMVMATVKKGKPD-LRKKVMPAVIVRQRK 86 (126)
Q Consensus 52 ~~~a~vGD~I~vsVKk~~~~-~Kg~v~~AvIVRtkk 86 (126)
.|.-.+||+|.|.++-...+ .+-|.|.++|+.-+.
T Consensus 19 iP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~ 54 (146)
T 3v2d_T 19 LPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRR 54 (146)
T ss_dssp CCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEEC
T ss_pred CCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEEC
Confidence 47788999999999876543 367999999998764
No 11
>2o5u_A Thioesterase; putative thioesterese,, hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP: d.38.1.1 PDB: 2av9_A 2o6t_A 2o6b_A 2o6u_A
Probab=41.37 E-value=41 Score=22.27 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=36.0
Q ss_pred CCccCCEEEEEEeeccCCcccceecEEEEe--eecceEecCCeEEEEc-ceEEecchhHHHHhhchhhhhcc
Q 033152 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVR--QRKPWRRKDGVFMYFE-GSAITGPIGKECADLWPRIASAA 122 (126)
Q Consensus 54 ~a~vGD~I~vsVKk~~~~~Kg~v~~AvIVR--tkk~~~R~dG~~i~F~-GTRI~GpV~~Elr~k~~Ki~sLA 122 (126)
.+..||.|.+...-....-..=.+..-|.+ +....-+-...++.+| -|+=-=|+|.|+++.+.....+|
T Consensus 76 ~~~~gd~v~v~t~v~~~~~~s~~~~~~i~~~~~g~~~a~~~~~~v~vd~~~~r~~~ip~~~~~~l~~~~~~~ 147 (148)
T 2o5u_A 76 PVAFPQRIEMGLRVARLGNSSVQYELALFLEGQREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSSA 147 (148)
T ss_dssp CCCTTSCEEEEEEEEEECSSEEEEEEEEEESSCCBCSEEEEEEEEEEETTTCCBCCCCHHHHHHHHTTC---
T ss_pred cccCCCEEEEEEEEEEeCCcEEEEEEEEEECCCceEEEEEEEEEEEEECCCCccccCCHHHHHHHHHhhccC
Confidence 678999999887543322111111111222 1122333344567777 34334489999999876665543
No 12
>2w3x_A CALE7; hydrolase, hotdog fold, thioesterase, enediyne biosynthesis; HET: JEF; 1.75A {Micromonospora echinospora}
Probab=40.84 E-value=71 Score=20.82 Aligned_cols=67 Identities=6% Similarity=-0.066 Sum_probs=36.5
Q ss_pred CCCccCCEEEEEEeeccCCcccceecE-EEEe---eecceEecCCeEEEEc-ceE--EecchhHHHHhhchhhhh
Q 033152 53 PSACVGDMVMATVKKGKPDLRKKVMPA-VIVR---QRKPWRRKDGVFMYFE-GSA--ITGPIGKECADLWPRIAS 120 (126)
Q Consensus 53 ~~a~vGD~I~vsVKk~~~~~Kg~v~~A-vIVR---tkk~~~R~dG~~i~F~-GTR--I~GpV~~Elr~k~~Ki~s 120 (126)
+.+..||.|.|...-....-. .+... .|.+ .....-+-...++.+| -|+ =-=|+|.|+++.|.....
T Consensus 69 ~~~~~gd~v~v~t~v~~~~~~-s~~~~~~i~~~~~~g~~~a~~~~~~v~vd~~~~~~r~~~ip~~~~~~~~~~~~ 142 (147)
T 2w3x_A 69 AELAPFDRLAVRMRLVELTQT-QMELGFDYLRLGGDDLLVARGRQRIACMRGPNGRTEPVRVPAGLVRAFAPFRS 142 (147)
T ss_dssp SCCCTTCEEEEEEEEEEECSS-EEEEEEEEEEESSSEEEEEEEEEEEEEEESSTTSCEECCCCHHHHHHTGGGCS
T ss_pred CCCCCCCEEEEEEEEEEecCc-EEEEEEEEEEcCCCCEEEEEEEEEEEEEECCCCccccccCCHHHHHHHHHHhh
Confidence 378899999988754332211 12111 1222 1222333444566777 232 335899999987766543
No 13
>2cye_A TTHA1846, putative thioesterase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: COA; 1.90A {Thermus thermophilus} SCOP: d.38.1.1
Probab=40.75 E-value=61 Score=20.68 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=34.0
Q ss_pred CCccCCEEEEEEeeccCCcccceecEEEEeeecceEecCCeEEEEcceEEecchhHHHHhhchhh
Q 033152 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEGSAITGPIGKECADLWPRI 118 (126)
Q Consensus 54 ~a~vGD~I~vsVKk~~~~~Kg~v~~AvIVRtkk~~~R~dG~~i~F~GTRI~GpV~~Elr~k~~Ki 118 (126)
.+..||.|.+...-....-+.-.+..-|.+.-...-+-...++.+| ++=.=|+|.|+++.+...
T Consensus 65 ~~~~gd~l~v~~~v~~~~~~s~~~~~~i~~~g~~~a~~~~~~v~~d-~~~~~~~p~~~~~~l~~~ 128 (133)
T 2cye_A 65 PILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLE-GGRPAPLPEAIRERIRAL 128 (133)
T ss_dssp CCBTTCEEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEEEEE-TTEECCCCHHHHHHHHHH
T ss_pred cccCCCEEEEEEEEEEeCCcEEEEEEEEEECCEEEEEEEEEEEEEe-CCCcccCCHHHHHHHHHh
Confidence 6789999998775433322211111222222112223334456666 444558999999865544
No 14
>2oaf_A Thioesterase superfamily; YP_508616.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; HET: CIT PGE; 2.00A {Jannaschia SP} SCOP: d.38.1.1
Probab=37.69 E-value=56 Score=21.69 Aligned_cols=65 Identities=5% Similarity=-0.105 Sum_probs=34.3
Q ss_pred CCccCCEEEEEEeeccCCcccceecEEEEeeecceEecCCeEEEEc-ceEEecchhHHHHhhchhh
Q 033152 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFE-GSAITGPIGKECADLWPRI 118 (126)
Q Consensus 54 ~a~vGD~I~vsVKk~~~~~Kg~v~~AvIVRtkk~~~R~dG~~i~F~-GTRI~GpV~~Elr~k~~Ki 118 (126)
.+..||.|.|...-....-+.=.+..-|.+.-...-+-...++.+| .|+=-=|+|.|+++.+...
T Consensus 83 ~~~~gd~v~v~t~v~~~~~~s~~~~~~i~~~g~~~a~~~~~~v~vd~~~~r~~~ip~~~~~~l~~~ 148 (151)
T 2oaf_A 83 PVTPRHILKCHTWPTRLGTKSITFRVDGVQDGVTCFVGAFTCVFTIADQFKSQPAPDHLRALIEPH 148 (151)
T ss_dssp CCCTTSCEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEEEEEGGGTEEECCCHHHHHHHGGG
T ss_pred CCcCCCEEEEEEEEEEeCCcEEEEEEEEEECCEEEEEEEEEEEEEcCCCCcccCCCHHHHHHHHhh
Confidence 6789999998875433322111111112222222233344456666 3333448999999876544
No 15
>1s5u_A Protein YBGC; structural genomics, hypothetical protein, thioesterase fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: d.38.1.1
Probab=37.29 E-value=51 Score=21.15 Aligned_cols=64 Identities=9% Similarity=0.030 Sum_probs=32.8
Q ss_pred CCccCCEEEEEEeeccCCcccceecEEE-EeeecceEecCCeEEEEc-ceEEecchhHHHHhhchh
Q 033152 54 SACVGDMVMATVKKGKPDLRKKVMPAVI-VRQRKPWRRKDGVFMYFE-GSAITGPIGKECADLWPR 117 (126)
Q Consensus 54 ~a~vGD~I~vsVKk~~~~~Kg~v~~AvI-VRtkk~~~R~dG~~i~F~-GTRI~GpV~~Elr~k~~K 117 (126)
.+..||.|.+...-....-+.=.+..-| .+.-...-+-...++.+| -|+=-=|+|.|+++.+..
T Consensus 71 ~~~~gd~v~v~~~v~~~~~~s~~~~~~i~~~~g~~~a~~~~~~v~vd~~~~r~~~ip~~~~~~l~~ 136 (138)
T 1s5u_A 71 PARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ 136 (138)
T ss_dssp CCCTTCEEEEEEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEEEEETTTTEECCCCHHHHHHC--
T ss_pred cccCCCEEEEEEEEEEeCCeEEEEEEEEEecCCEEEEEEEEEEEEEeCCCCCEecCCHHHHHHhhc
Confidence 6789999998875433321111111111 122222333344566666 333334899999986543
No 16
>2oiw_A Putative 4-hydroxybenzoyl-COA thioesterase; structural genomics, protein structure initiative, midwest center for structu genomics; 2.00A {Geobacillus stearothermophilus} SCOP: d.38.1.1
Probab=36.77 E-value=58 Score=20.96 Aligned_cols=66 Identities=11% Similarity=0.055 Sum_probs=34.8
Q ss_pred CCccCCEEEEEEeeccCCcccceecEEEEeeecceEecCCeEEEEc-ceEEecchhHHHHhhchhhh
Q 033152 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFE-GSAITGPIGKECADLWPRIA 119 (126)
Q Consensus 54 ~a~vGD~I~vsVKk~~~~~Kg~v~~AvIVRtkk~~~R~dG~~i~F~-GTRI~GpV~~Elr~k~~Ki~ 119 (126)
.+..||.|.+...-....-+.-.+..-|.+.-...-+-...++.+| .|+=-=|+|.|+++.+....
T Consensus 65 ~~~~gd~v~v~~~v~~~~~~s~~~~~~i~~~g~~~a~~~~~~v~vd~~~~r~~~ip~~~~~~l~~~~ 131 (136)
T 2oiw_A 65 QMYYGQDVTVYTGIERIGNTSLTIYEEIHQNGVVCAKGRSVYVNFNFDTGRPEPIPDDIRVKLREHV 131 (136)
T ss_dssp CCCTTSCEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEEEEETTTTEECCCCHHHHHHHHTTB
T ss_pred cCCCCCEEEEEEEEEecCCcEEEEEEEEEECCEEEEEEEEEEEEEECCCCccccCCHHHHHHHHhhc
Confidence 6789999988775433321111111112222122233344566666 34334489999998765543
No 17
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=36.71 E-value=66 Score=23.89 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=52.0
Q ss_pred CcccccccccCcccccEEEEecCCCcceEEE----------EEEecccccccCCCCCccCCEEEEEEeeccCCcccceec
Q 033152 9 SAGNKFRMSLGLPVAATVNCADNTGAKNLYI----------ISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMP 78 (126)
Q Consensus 9 ~~~~~~~~~~mIq~~T~L~VaDNSGak~v~c----------I~v~~~~~r~~r~~~a~vGD~I~vsVKk~~~~~Kg~v~~ 78 (126)
.++...++..||+.|+...|-+..|--.|++ .....+..+ -+-.-.+||.++|..= -++.-.
T Consensus 7 ~~~l~R~l~nlir~G~V~~vd~~~~rvrV~~~~~~t~wl~~~~~~ag~~~--~~~~P~vGeqV~v~f~------~Gd~~~ 78 (211)
T 3qr8_A 7 IQELARALRNMIRTGIIVETDLNAGRCRVQTGGMCTDWLQWLTHRAGRSR--TWWAPSVGEQVLILAV------GGELDT 78 (211)
T ss_dssp CTTHHHHHHHHEEEEEEEEEETTTTEEEEEETTEECCCEEECCSCBSSSB--CCCCCCTTCEEEEEEC------CTTTCC
T ss_pred HHHHHHHHHhCcEEEEEEEEECCCCEEEEEeCCccceeEEeEcccccCCc--eEeCCCCCCEEEEEeC------CCccCc
Confidence 3455667788899998888876665333332 211111111 1223479999988862 356667
Q ss_pred EEEEee--------------ecceEecCCeEEEEc
Q 033152 79 AVIVRQ--------------RKPWRRKDGVFMYFE 99 (126)
Q Consensus 79 AvIVRt--------------kk~~~R~dG~~i~F~ 99 (126)
++|+.. .+.++-+||..+.||
T Consensus 79 gvVlg~~~s~~~~~P~~~~~~~~~~~~dG~~i~yd 113 (211)
T 3qr8_A 79 AFVLPGIYSGDNPSPSVSADALHIRFPDGAVIEYE 113 (211)
T ss_dssp EEEEEEECCSSSCCSCCCSSCEEEECTTSCEEEEE
T ss_pred cEEEeeecCcccCCCCCCCCeEEEEcCCCCEEEEE
Confidence 788775 344556799999999
No 18
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=36.25 E-value=23 Score=26.68 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=27.6
Q ss_pred CCCCccCCEEEEEEeeccC-CcccceecEEEEeeec
Q 033152 52 LPSACVGDMVMATVKKGKP-DLRKKVMPAVIVRQRK 86 (126)
Q Consensus 52 ~~~a~vGD~I~vsVKk~~~-~~Kg~v~~AvIVRtkk 86 (126)
.|.-.+||+|.|.++-..- +.|-|.|.+||+.-+.
T Consensus 24 iP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~ 59 (166)
T 2zjr_M 24 LPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAING 59 (166)
T ss_dssp CCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCC
T ss_pred CCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeC
Confidence 4778999999999976543 3477999999998653
No 19
>2gf6_A Conserved hypothetical protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG; HET: COA; 1.91A {Sulfolobus solfataricus} SCOP: d.38.1.1
Probab=35.71 E-value=82 Score=20.03 Aligned_cols=61 Identities=10% Similarity=0.008 Sum_probs=32.1
Q ss_pred CCccCCEEEEEEeeccCCccc-ceecEEEEeeecceEecCCeEEEEc-ceEEecchhHHHHhhc
Q 033152 54 SACVGDMVMATVKKGKPDLRK-KVMPAVIVRQRKPWRRKDGVFMYFE-GSAITGPIGKECADLW 115 (126)
Q Consensus 54 ~a~vGD~I~vsVKk~~~~~Kg-~v~~AvIVRtkk~~~R~dG~~i~F~-GTRI~GpV~~Elr~k~ 115 (126)
.+..||.|.+...-....-.. .+... |.+.-...-+-...++.+| -++=-=|+|.|+++.+
T Consensus 70 ~~~~gd~v~v~~~v~~~~~~s~~~~~~-i~~~g~~~a~~~~~~v~vd~~~~r~~~ip~~~~~~l 132 (135)
T 2gf6_A 70 PVKLGDKLTVLLNPKILSNKTIKFEFK-VLKDGELTTEGYVIQIAINPKIWKSTEMPKEIMDKL 132 (135)
T ss_dssp CCCTTCEEEEEEEEEECSSSEEEEEEE-EEETTEEEEEEEEEEEEEETTTTEECCCCHHHHHHH
T ss_pred CCcCCCEEEEEEEEEEeCCcEEEEEEE-EEECCEEEEEEEEEEEEEecccCceecCCHHHHHHh
Confidence 678999999887644332211 11111 1122222233333456666 3433458999998764
No 20
>3ck1_A Putative thioesterase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.74A {Ralstonia eutropha}
Probab=32.64 E-value=88 Score=20.42 Aligned_cols=65 Identities=5% Similarity=0.028 Sum_probs=33.6
Q ss_pred CCccCCEEEEEEeeccCCcccceecEEEEee-ecceEecCCeEEEEc-ceEEecchhHHHHhhchhh
Q 033152 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQ-RKPWRRKDGVFMYFE-GSAITGPIGKECADLWPRI 118 (126)
Q Consensus 54 ~a~vGD~I~vsVKk~~~~~Kg~v~~AvIVRt-kk~~~R~dG~~i~F~-GTRI~GpV~~Elr~k~~Ki 118 (126)
.+..||.|.|...-....-+.=.+..-|.+. -...-+-...++.+| -|+=-=|+|.|+++.+...
T Consensus 71 ~~~~gd~v~v~~~v~~~~~~s~~~~~~i~~~~g~~~a~~~~~~v~vd~~~~r~~~ip~~~~~~l~~~ 137 (150)
T 3ck1_A 71 PSRLGETLTRELRVVKLGQSSFTVQVRFMGPDSGLRLEVTQRLVCVDTDKIAPRPLPDPVRQAMATY 137 (150)
T ss_dssp CCBTTCEEEEEEEEEEECSSEEEEEEEEECTTSCEEEEEEEEEECEEETTEEECCCCHHHHHHHHTT
T ss_pred CCcCCCEEEEEEEEEEEcCcEEEEEEEEEeCCCEEEEEEEEEEEEEeCCCCccccCCHHHHHHHHHh
Confidence 6789999998875433321111111111111 122233333455666 4444458999999865544
No 21
>2nuj_A Thioesterase superfamily; YP_509914.1, structural genomics, protein structure initiative, joint center for structural G JCSG, hydrolase; 2.00A {Jannaschia} SCOP: d.38.1.1
Probab=27.89 E-value=1.3e+02 Score=20.22 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=36.2
Q ss_pred CCccCCEEEEEEeeccCCcccceecEEEEe-eecceEecCC--eEEEEc-ceEEecchhHHHHhhchhhh
Q 033152 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVR-QRKPWRRKDG--VFMYFE-GSAITGPIGKECADLWPRIA 119 (126)
Q Consensus 54 ~a~vGD~I~vsVKk~~~~~Kg~v~~AvIVR-tkk~~~R~dG--~~i~F~-GTRI~GpV~~Elr~k~~Ki~ 119 (126)
.+..||.|.|...-....-..=.+..-|.+ .-...-+-.. .++.+| .|+=-=|+|.|+++.+....
T Consensus 88 ~~~~gd~i~v~t~v~~~~~~s~~~~~~i~~~~g~~~a~~~~~~~~v~vd~~~~r~~~ip~~~~~~l~~~~ 157 (163)
T 2nuj_A 88 EMGMGEDYVITGRVSNFRTTSFTMEFACWRLGDAVECTSEGSAVVVLLNRDGSGRYPIPEAGRASFVTED 157 (163)
T ss_dssp CCCTTCEEEEEEEEEEECSSEEEEEEEEEECSSSCEEEEEEEEEEEEECTTSSSBCCCCHHHHHHHHHTS
T ss_pred CccCCCEEEEEEEEEEeCCcEEEEEEEEEeCCCEEEEEEEEeeEEEEEECCCCCCccCCHHHHHHHHhhh
Confidence 678999999887543322111111111222 2223344444 567777 34444589999998765543
No 22
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=26.55 E-value=1e+02 Score=21.63 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=34.3
Q ss_pred cCcccccEEEEecCC-CcceEEEEEEecccccccCCCCCccCCEEEEEEeeccCCc-ccceec
Q 033152 18 LGLPVAATVNCADNT-GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL-RKKVMP 78 (126)
Q Consensus 18 ~mIq~~T~L~VaDNS-Gak~v~cI~v~~~~~r~~r~~~a~vGD~I~vsVKk~~~~~-Kg~v~~ 78 (126)
=.|.+|+.| |+- -.-.++.|..-+. ....|..||-|-++|+....+. .|++.+
T Consensus 58 G~LK~G~~V---Pg~~~vg~VkSIE~~~e-----~v~eA~~GdnVai~Ikg~~~~I~~GdVLy 112 (116)
T 1xe1_A 58 GMIGVGFKV---KGPSGIGGIVRIERNRE-----KVEFAIAGDRIGISIEGKIGKVKKGDVLE 112 (116)
T ss_dssp EEEETTCEE---ECSSCEEEEEEEEETTE-----EESEEETTCEEEEEEESCCCCCCTTCEEE
T ss_pred EEEcCCCCc---CCCceEEEEEEEEECCc-----CcCCcCCCCEEEEEEECCccccCCCcEEE
Confidence 456788877 544 2444555665332 2479999999999998755444 456554
No 23
>2xem_A DYNE7, TEBC; biosynthetic protein, polyketide biosynthesis, enediyne anti agent, thioesterase; HET: SSV; 2.10A {Micromonospora chersina} PDB: 2xfl_A
Probab=26.21 E-value=1.4e+02 Score=19.66 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=35.2
Q ss_pred CCccCCEEEEEEeeccCCcccceecEE-EEe----eecceEecCCeEEEEc-ce--EEecchhHHHHhhchhhhhc
Q 033152 54 SACVGDMVMATVKKGKPDLRKKVMPAV-IVR----QRKPWRRKDGVFMYFE-GS--AITGPIGKECADLWPRIASA 121 (126)
Q Consensus 54 ~a~vGD~I~vsVKk~~~~~Kg~v~~Av-IVR----tkk~~~R~dG~~i~F~-GT--RI~GpV~~Elr~k~~Ki~sL 121 (126)
.+..||.|.|...-....- ..+.... |.+ +....-+-.-.++.+| -| +=-=|+|.|+++.+..++.-
T Consensus 74 ~~~~gd~v~v~t~v~~~~~-~s~~~~~~i~~~~~~~g~~~a~~~~~~v~vd~~~~~~r~~~iP~~~~~~l~~~~~~ 148 (150)
T 2xem_A 74 EGSAFDEVEVRMMLDRLDG-HRIAMSFDYVRVAPGPPTLLAQGRQTVACMRRAGHGLEPVEVPAELRRALSRYAVV 148 (150)
T ss_dssp CCCTTCEEEEEEEEEEEET-TEEEEEEEEEEEESSSCEEEEEEEEEEEEEEEETTEEEECCCCHHHHHHHHHHSCC
T ss_pred CCCCCCEEEEEEEEEeeCC-cEEEEEEEEEecCCCCCeEEEEEEEEEEEEECCCCCCceecCCHHHHHHHHHhhhc
Confidence 6789999998875433221 1111111 112 1112223333456666 22 23348999999877666543
No 24
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=25.88 E-value=9.8 Score=30.16 Aligned_cols=35 Identities=17% Similarity=0.373 Sum_probs=28.4
Q ss_pred CCCCccCCEEEEEEeeccCCcccceecEEEEeeec
Q 033152 52 LPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRK 86 (126)
Q Consensus 52 ~~~a~vGD~I~vsVKk~~~~~Kg~v~~AvIVRtkk 86 (126)
.|.-.+||+|.|.++-...+-|-|.|.++|+.-+.
T Consensus 140 iPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~ 174 (233)
T 3bbo_R 140 VPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQN 174 (233)
T ss_dssp CSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCB
T ss_pred CCccCCCCEEEEEEEeccCcceecceEEEEEEEeC
Confidence 47789999999999776645578999999997553
No 25
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=23.49 E-value=1.2e+02 Score=22.86 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=23.5
Q ss_pred ccEEEEecCC--Cc-ceEEEEEEecccccccCCCCC-ccCCEEEEE
Q 033152 23 AATVNCADNT--GA-KNLYIISVKGIKGRLNRLPSA-CVGDMVMAT 64 (126)
Q Consensus 23 ~T~L~VaDNS--Ga-k~v~cI~v~~~~~r~~r~~~a-~vGD~I~vs 64 (126)
-+.|.++|-| -+ .-+.| .++... ...+|.. ++||+|.+.
T Consensus 68 ~~TltI~D~S~~~~~~gL~v-~iF~~~--~e~LP~V~~~GDIIlL~ 110 (187)
T 1qzg_A 68 VTTVYLWDPTCDTSSIGLQI-HLFSKQ--GNDLPVIKQVGQPLLLH 110 (187)
T ss_dssp EEEEEEECTTSCTTSCCEEE-EEEESS--SSCSCCCCSTTCEEEEE
T ss_pred EEEEEEEeCCCCCCCCceEE-EEECCC--hhhCCCCCCCCCEEEEE
Confidence 3478999988 11 12333 344322 3456776 899999764
No 26
>2hx5_A Hypothetical protein; thioesterase/thiol ester dehydrase-isomerase fold, structura genomics, joint center for structural genomics, JCSG; 1.50A {Prochlorococcus marinus} SCOP: d.38.1.1
Probab=22.50 E-value=97 Score=20.50 Aligned_cols=63 Identities=3% Similarity=-0.069 Sum_probs=32.2
Q ss_pred CCccCCEEEEEEeeccCCcccceecE-EEEeeecceEecCCeEEEEc-ceEEecchhHHHHhhchh
Q 033152 54 SACVGDMVMATVKKGKPDLRKKVMPA-VIVRQRKPWRRKDGVFMYFE-GSAITGPIGKECADLWPR 117 (126)
Q Consensus 54 ~a~vGD~I~vsVKk~~~~~Kg~v~~A-vIVRtkk~~~R~dG~~i~F~-GTRI~GpV~~Elr~k~~K 117 (126)
.+..||.|.|...-....-. .+... -|.+.-...-+-...++.+| -|+=.-|+|.|+++.+..
T Consensus 79 p~~~gd~i~v~t~v~~~~~~-s~~~~~~i~~~g~~~a~~~~~~v~vd~~~~r~~~iP~~~~~~l~~ 143 (152)
T 2hx5_A 79 PIHTGDALAMELRPERLNPN-SFQVHFEFRCEEQIAAHALIRHLAINAQTRHRCALPEGIDRWLEA 143 (152)
T ss_dssp CCCTTCEEEEEEEEEEEETT-EEEEEEEEEETTEEEEEEEEEEECEETTTCCBCCCCHHHHHHHHH
T ss_pred CCCCCCEEEEEEEEEEeCCc-EEEEEEEEEECCEEEEEEEEEEEEEeCCCCeEecCCHHHHHHHHh
Confidence 67899999988754332211 11111 11221112223333455566 333344899999986543
No 27
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=22.45 E-value=1.3e+02 Score=23.31 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=26.9
Q ss_pred ccccEEEEecCCCcceEEEEEEecccccccCCCCC-ccCCEEEEE
Q 033152 21 PVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSA-CVGDMVMAT 64 (126)
Q Consensus 21 q~~T~L~VaDNSGak~v~cI~v~~~~~r~~r~~~a-~vGD~I~vs 64 (126)
.--..|.++|.|-+. +.|- ++... ...+|.. .+||+|.+-
T Consensus 37 d~~~tl~I~D~S~~g-l~v~-iF~~~--~~~LP~v~~~GDII~l~ 77 (294)
T 1xjv_A 37 DYCSVVTIVDQTNVK-LTCL-LFSGN--YEALPIIYKNGDIVRFH 77 (294)
T ss_dssp SEEEEEEEECTTCCE-EEEE-EEESS--GGGSCCCCSTTCEEEEE
T ss_pred eEEEEEEEEcCCCCC-EEEE-EECCC--hHHCCCCCCCCCEEEEE
Confidence 445679999977665 5554 55422 3456877 999998865
No 28
>2pzh_A Hypothetical protein HP_0496; lipid, acyl-COA, bacterial membrane, TOL-PAL system, thioest hot-DOG fold, hydrolase; 1.70A {Helicobacter pylori}
Probab=21.97 E-value=1.6e+02 Score=18.64 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=32.6
Q ss_pred CCccCCEEEEEEeeccCCccc-ceecEEEEeeec---------ceEecCCeEEEEc-ceEEecchhHHHHhhch
Q 033152 54 SACVGDMVMATVKKGKPDLRK-KVMPAVIVRQRK---------PWRRKDGVFMYFE-GSAITGPIGKECADLWP 116 (126)
Q Consensus 54 ~a~vGD~I~vsVKk~~~~~Kg-~v~~AvIVRtkk---------~~~R~dG~~i~F~-GTRI~GpV~~Elr~k~~ 116 (126)
.+..||.|.+...-....-.. .+... |.+... ..-+-...++.+| -++=-=|+|.|+++.+.
T Consensus 61 ~~~~gd~v~v~~~v~~~~~~s~~~~~~-i~~~~~~~~~~~~g~~~a~~~~~~v~vd~~~~r~~~ip~~~~~~l~ 133 (135)
T 2pzh_A 61 PASLGQVLEIRTQIKELRKVFVVLFQE-IYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPIAIPKLFKELLN 133 (135)
T ss_dssp CCBTTCEEEEEEEEEEECSSEEEEEEE-EEEEECTTCCCCCCEEEEEEEEEEEEECTTTCCEECCCHHHHHHHH
T ss_pred ccccCCEEEEEEEEEEecceEEEEEEE-EEeCCCccccccCceEEEEEEEEEEEEECCCCcEecCCHHHHHHhh
Confidence 678999999887543332111 11111 112111 2233344466666 34334488999987653
No 29
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=21.62 E-value=49 Score=24.86 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.4
Q ss_pred CCCccCCEEEEEEeec
Q 033152 53 PSACVGDMVMATVKKG 68 (126)
Q Consensus 53 ~~a~vGD~I~vsVKk~ 68 (126)
-.+++||+|.++||--
T Consensus 16 T~~~VGdII~Atv~vn 31 (166)
T 2bm3_A 16 NKGEVGDILIGTVRIN 31 (166)
T ss_dssp SCCCTTCEEEEEEEEE
T ss_pred cceeeCCEEEEEEEEc
Confidence 3789999999999753
No 30
>1lo7_A 4-hydroxybenzoyl-COA thioesterase; hot DOG fold, catalytic mechanism, hydrolase; HET: 4CO; 1.50A {Pseudomonas SP} SCOP: d.38.1.1 PDB: 1bvq_A* 1lo8_A* 1lo9_A*
Probab=21.30 E-value=1.7e+02 Score=18.62 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=33.7
Q ss_pred CCccCCEEEEEEeeccCCcccceecEEEEe----ee-cceEecCCeEEEEc---ceEEecchhHHHHhhc
Q 033152 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVR----QR-KPWRRKDGVFMYFE---GSAITGPIGKECADLW 115 (126)
Q Consensus 54 ~a~vGD~I~vsVKk~~~~~Kg~v~~AvIVR----tk-k~~~R~dG~~i~F~---GTRI~GpV~~Elr~k~ 115 (126)
.+..||.|.+...-....-+.=.+..-|.+ +- ...-+-...++.+| .|+=-=|+|.|+++.+
T Consensus 71 p~~~gd~v~v~~~v~~~~~~s~~~~~~i~~~~~~~g~~~~a~~~~~~v~vd~~~~~~r~~~ip~~~~~~l 140 (141)
T 1lo7_A 71 TASYDDVLTIETCIKEWRRKSFVQRHSVSRTTPGGDVQLVMRADEIRVFAMNDGERLRAIEVPADYIELC 140 (141)
T ss_dssp CCCTTCEEEEEEEEEEECSSEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEETTEEEEECCCHHHHHHH
T ss_pred CCCCCCEEEEEEEEEEEcceEEEEEEEEEECCCCCCcEEEEEEEEEEEEEecCCCCccEecCCHHHHHhh
Confidence 678999999887543332211111112222 11 22333344566666 5666668999988753
No 31
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=21.20 E-value=51 Score=25.11 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=13.0
Q ss_pred CCCccCCEEEEEEee
Q 033152 53 PSACVGDMVMATVKK 67 (126)
Q Consensus 53 ~~a~vGD~I~vsVKk 67 (126)
..|++||+|..+||-
T Consensus 14 t~a~VGdIItATi~v 28 (181)
T 3bwz_A 14 TTASVGEIVTASINI 28 (181)
T ss_dssp SCCCTTCEEEEEEEE
T ss_pred cccccccEEEEEEEe
Confidence 368999999999974
No 32
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=21.17 E-value=50 Score=25.22 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.3
Q ss_pred CCCccCCEEEEEEeec
Q 033152 53 PSACVGDMVMATVKKG 68 (126)
Q Consensus 53 ~~a~vGD~I~vsVKk~ 68 (126)
..|++||+|+.+||--
T Consensus 28 t~a~VGdII~ATIkin 43 (187)
T 3kcp_B 28 NKGEVGDILIGTVRIN 43 (187)
T ss_dssp SCCCTTCEEEEEEEEE
T ss_pred cceeeccEEEEEEEEc
Confidence 3689999999999743
No 33
>1l0s_A Thermal hysteresis protein; LEFT-handed beta-helix, antifreeze protein, iodination; HET: TYI; 2.30A {Choristoneura fumiferana} SCOP: b.81.2.1 PDB: 1eww_A 1n4i_A
Probab=21.03 E-value=30 Score=23.41 Aligned_cols=18 Identities=50% Similarity=0.665 Sum_probs=13.3
Q ss_pred ecCCeEEEEc---ceEEecch
Q 033152 90 RKDGVFMYFE---GSAITGPI 107 (126)
Q Consensus 90 R~dG~~i~F~---GTRI~GpV 107 (126)
+.||.+|.-. ||||.||=
T Consensus 41 qy~gv~ITsSTtT~trIsGp~ 61 (90)
T 1l0s_A 41 RFDGVTITTSTSTGSRISGPG 61 (90)
T ss_dssp EEEEEEEESCEEESEEEEEEE
T ss_pred ccccEEEEeecccCceeeCCC
Confidence 3467776666 99999983
No 34
>2ali_A Hypothetical protein PA2801; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.75A {Pseudomonas aeruginosa} SCOP: d.38.1.1 PDB: 3qy3_A
Probab=20.60 E-value=1.9e+02 Score=19.51 Aligned_cols=63 Identities=6% Similarity=0.093 Sum_probs=33.3
Q ss_pred CCccCCEEEEEEeeccCCcccceecEEEEee---ecceEecCCeEEEEc-ceEEecchhHHHHhhch
Q 033152 54 SACVGDMVMATVKKGKPDLRKKVMPAVIVRQ---RKPWRRKDGVFMYFE-GSAITGPIGKECADLWP 116 (126)
Q Consensus 54 ~a~vGD~I~vsVKk~~~~~Kg~v~~AvIVRt---kk~~~R~dG~~i~F~-GTRI~GpV~~Elr~k~~ 116 (126)
.+..||.|.|...-....-..=.+..-|.+. ....-+-...++.+| -++=-=|+|.|+++.+.
T Consensus 90 p~~~gd~v~v~t~v~~~~~~s~~~~~~i~~~~~~g~~~a~a~~~~v~vd~~~~rp~~iP~~~~~~l~ 156 (158)
T 2ali_A 90 PVVHPATVVVELYAGRLGTSSLVLEHRLHTLEDPQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAIA 156 (158)
T ss_dssp CCCSSCEEEEEEEEEEECSSEEEEEEEEEESSCTTSCCEEEEEEEEEEEGGGTEECCCCHHHHHHHC
T ss_pred cccCCCEEEEEEEEEEecCcEEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCcccCCCHHHHHHhh
Confidence 6789999998875433221111111112221 122333344566777 33334589999998653
Done!