RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 033152
(126 letters)
>gnl|CDD|185418 PTZ00054, PTZ00054, 60S ribosomal protein L23; Provisional.
Length = 139
Score = 216 bits (553), Expect = 2e-74
Identities = 101/139 (72%), Positives = 114/139 (82%), Gaps = 14/139 (10%)
Query: 2 SKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMV 61
KRGRGG GNKFR++LGLPV A VNCADN+GAKNLYII+VKGI GRLNRLPSA +GDMV
Sbjct: 1 MKRGRGGVGGNKFRVTLGLPVGAVVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMV 60
Query: 62 MATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFE--------------GSAITGPI 107
+ATVKKGKP+LRKKV+ AVI+RQRK WRRKDGVF+YFE GSAITGP+
Sbjct: 61 LATVKKGKPELRKKVLNAVIIRQRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPV 120
Query: 108 GKECADLWPRIASAANAIV 126
KECADLWP+I+SAA AIV
Sbjct: 121 AKECADLWPKISSAAPAIV 139
>gnl|CDD|181478 PRK08571, rpl14p, 50S ribosomal protein L14P; Reviewed.
Length = 132
Score = 148 bits (377), Expect = 1e-47
Identities = 66/130 (50%), Positives = 87/130 (66%), Gaps = 14/130 (10%)
Query: 11 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP 70
G + +++ GLPV A + CADNTGAK + IISVKG KG RLP A VGDMV+ +VKKG P
Sbjct: 3 GIRSKVTRGLPVGARLVCADNTGAKEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTP 62
Query: 71 DLRKKVMPAVIVRQRKPWRRKDGVFMYFE--------------GSAITGPIGKECADLWP 116
++RK+V+ AV+VRQRK +RR DG + FE G+ I GP+ +E A+ WP
Sbjct: 63 EMRKQVLRAVVVRQRKEYRRPDGTRVKFEDNAAVIVTPEGTPKGTEIKGPVAREAAERWP 122
Query: 117 RIASAANAIV 126
+IAS A+ IV
Sbjct: 123 KIASIASIIV 132
>gnl|CDD|132712 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P. Part of the
50S ribosomal subunit. Forms a cluster with proteins L3
and L24e, part of which may contact the 16S rRNA in 2
intersubunit bridges.
Length = 131
Score = 142 bits (361), Expect = 3e-45
Identities = 64/130 (49%), Positives = 84/130 (64%), Gaps = 14/130 (10%)
Query: 11 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP 70
G + ++ LPV A + CADNTGAK + +ISVKG KG RLP A VGDMV+ +VKKG P
Sbjct: 2 GIRAGITRALPVGALLVCADNTGAKEVEVISVKGYKGVKRRLPCAGVGDMVVVSVKKGTP 61
Query: 71 DLRKKVMPAVIVRQRKPWRRKDGVFMYFE--------------GSAITGPIGKECADLWP 116
++RK+V AV+VRQRK +RR DG + FE G+ I GP+ +E A+ WP
Sbjct: 62 EMRKQVFKAVVVRQRKEYRRPDGTRVKFEDNAVVIVTPDGEPKGTEIKGPVAREAAERWP 121
Query: 117 RIASAANAIV 126
+IAS A+ IV
Sbjct: 122 KIASIASIIV 131
>gnl|CDD|223171 COG0093, RplN, Ribosomal protein L14 [Translation, ribosomal
structure and biogenesis].
Length = 122
Score = 113 bits (286), Expect = 7e-34
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 22/126 (17%)
Query: 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP-DLRKK-- 75
+ V +N ADN+GAK + I V G R A VGD+++ +VKK P + KK
Sbjct: 1 MIQVQTRLNVADNSGAKEVMCIKVLGGSRRR----YAGVGDIIVVSVKKAIPRGMVKKGD 56
Query: 76 VMPAVIVRQRKPWRRKDGVFMYFE--------------GSAITGPIGKECADL-WPRIAS 120
V+ AV+VR +K RR DG ++ F+ G+ I GP+ +E + + +IAS
Sbjct: 57 VVKAVVVRTKKEVRRPDGSYIKFDDNAAVIINPDGEPRGTRIFGPVARELRERGFMKIAS 116
Query: 121 AANAIV 126
A +V
Sbjct: 117 LAPEVV 122
>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e.
Length = 122
Score = 100 bits (251), Expect = 1e-28
Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 22/126 (17%)
Query: 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKG--KPDLRK-K 75
+ V +N ADN+GAK + I V G R A VGD+++ +VKK K ++K
Sbjct: 1 MIQVGTRLNVADNSGAKKVKCIKVLGGS----RKKYAKVGDIIVVSVKKAIPKGKVKKGD 56
Query: 76 VMPAVIVRQRKPWRRKDGVFMYFE--------------GSAITGPIGKEC-ADLWPRIAS 120
V+ AVIVR +K RRKDG ++ F+ G+ I GP+ +E A +P+I S
Sbjct: 57 VVKAVIVRTKKEVRRKDGSYIRFDDNAVVLINNKGEPKGTRIFGPVARELRAKKFPKILS 116
Query: 121 AANAIV 126
A ++
Sbjct: 117 LAPEVL 122
>gnl|CDD|180117 PRK05483, rplN, 50S ribosomal protein L14; Validated.
Length = 122
Score = 58.2 bits (142), Expect = 4e-12
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 21/101 (20%)
Query: 27 NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVR 83
N ADN+GAK + I V G R A +GD+++ +VK+ P + K V+ AV+VR
Sbjct: 9 NVADNSGAKEVMCIKVLGGSKRR----YASIGDVIVVSVKEAIPRGKVKKGDVVKAVVVR 64
Query: 84 QRKPWRRKDGVFMYFEGSA--------------ITGPIGKE 110
+K RR DG ++ F+ +A I GP+ +E
Sbjct: 65 TKKGVRRPDGSYIRFDDNAAVLLNNDGEPRGTRIFGPVARE 105
>gnl|CDD|176997 CHL00057, rpl14, ribosomal protein L14.
Length = 122
Score = 56.0 bits (136), Expect = 3e-11
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 21/105 (20%)
Query: 27 NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVR 83
N ADN+GA+ L I V G R A +GD+++A VK+ P++ R +V+ AVIVR
Sbjct: 9 NVADNSGARKLMCIRVLGASNR----KYAHIGDVIIAVVKEAVPNMPLKRSEVVRAVIVR 64
Query: 84 QRKPWRRKDGVFMYFE--------------GSAITGPIGKECADL 114
K +R +G+ + F+ G+ + GPI +E +
Sbjct: 65 TCKELKRDNGMIIRFDDNAAVVIDQEGNPKGTRVFGPIARELREK 109
>gnl|CDD|130139 TIGR01067, rplN_bact, ribosomal protein L14, bacterial/organelle.
This model distinguishes bacterial and most organellar
examples of ribosomal protein L14 from all archaeal and
eukaryotic forms [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 122
Score = 55.0 bits (133), Expect = 6e-11
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 21/104 (20%)
Query: 27 NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVR 83
N ADN+GAK + I V G R A VGD+++ VK P+ + K V+ AVIVR
Sbjct: 9 NVADNSGAKKVQCIKVLGGSRR----RYATVGDVIVVVVKDAIPNGKVKKGDVVKAVIVR 64
Query: 84 QRKPWRRKDGVFMYFEGSA--------------ITGPIGKECAD 113
+K RRKDG ++ F+ +A I GP+ +E D
Sbjct: 65 TKKGVRRKDGSYIRFDDNACVLINKNKEPRGTRIFGPVARELRD 108
>gnl|CDD|181933 PRK09532, PRK09532, DNA polymerase III subunit alpha; Reviewed.
Length = 874
Score = 27.4 bits (61), Expect = 2.7
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 23/71 (32%)
Query: 29 ADNT-GAKNLY----IISVKGIKGR-------LNR-----------LPSACVGDMVMATV 65
A NT G KNL I ++G++G+ +N+ + SAC+G + +
Sbjct: 89 AKNTQGYKNLVKLTTISHLQGVQGKGIFARPCINKELLEQYHEGLIVTSACLGGEIPQAI 148
Query: 66 KKGKPDLRKKV 76
G+PD +KV
Sbjct: 149 LSGRPDAARKV 159
>gnl|CDD|225387 COG2831, FhaC, Hemolysin activation/secretion protein
[Intracellular trafficking and secretion].
Length = 554
Score = 26.9 bits (60), Expect = 3.0
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 49 LNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWR 89
LNRLP ++ + G+ DL + V+Q KPWR
Sbjct: 190 LNRLPGVQADAELVPGSEPGESDLV------IKVQQGKPWR 224
>gnl|CDD|211356 cd08346, PcpA_N_like, N-terminal domain of Sphingobium
chlorophenolicum 2,6-dichloro-p-hydroquinone
1,2-dioxygenase (PcpA), and similar proteins. The
N-terminal domain of Sphingobium chlorophenolicum
(formerly Sphingomonas chlorophenolica)
2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and
similar proteins. PcpA is a key enzyme in the
pentachlorophenol (PCP) degradation pathway, catalyzing
the conversion of 2,6-dichloro-p-hydroquinone to
2-chloromaleylacetate. This domain belongs to a
conserved domain superfamily that is found in a variety
of structurally related metalloproteins, including the
bleomycin resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases.
Length = 126
Score = 26.4 bits (59), Expect = 3.3
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 18 LGLP-VAATVNCADNTGAKNLYIISVKGIKGRL 49
LGL V TVN D+ G +L+ G G L
Sbjct: 23 LGLRLVKKTVN-QDDPGTYHLFFGDGLGSPGTL 54
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,274,191
Number of extensions: 541490
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 20
Length of query: 126
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 41
Effective length of database: 7,167,512
Effective search space: 293867992
Effective search space used: 293867992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)