RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 033152
(126 letters)
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 132
Score = 124 bits (312), Expect = 2e-38
Identities = 54/130 (41%), Positives = 75/130 (57%), Gaps = 14/130 (10%)
Query: 11 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP 70
++ GL + + CADNTGA+ L +ISV G G NRLP A +GD + +V KG P
Sbjct: 3 ALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTP 62
Query: 71 DLRKKVMPAVIVRQRKPWRRKDGVFMYFE--------------GSAITGPIGKECADLWP 116
++R++V+ AV+VRQRKP RR DG + FE G+ + GPI +E A +
Sbjct: 63 EMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFG 122
Query: 117 RIASAANAIV 126
+ASAA IV
Sbjct: 123 SVASAATMIV 132
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
thermophilus [TaxId: 274]}
Length = 122
Score = 90.5 bits (225), Expect = 2e-25
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 22/119 (18%)
Query: 26 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIV 82
+ ADNTGA+ + I V A VGD+++A+VK+ P V+ AV+V
Sbjct: 8 LEVADNTGARKIMCIRVLKGSNA----KYATVGDVIVASVKEAIPRGAVKEGDVVKAVVV 63
Query: 83 RQRKPWRRKDGVFMYFE--------------GSAITGPIGKECADL-WPRIASAANAIV 126
R +K +R DG + F+ G+ + GP+ +E + + +I S A ++
Sbjct: 64 RTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL 122
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli
[TaxId: 562]}
Length = 121
Score = 87.1 bits (216), Expect = 6e-24
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 23/119 (19%)
Query: 26 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIV 82
+N ADN+GA+ + I V G + A VGD++ T+K+ P + V+ AV+V
Sbjct: 7 LNVADNSGARRVMCIKVLGG----SHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVV 62
Query: 83 RQRKPWRRKDGVFMYFE---------------GSAITGPIGKEC-ADLWPRIASAANAI 125
R +K RR DG + F+ G+ I GP+ +E ++ + +I S A +
Sbjct: 63 RTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV 121
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 122
Score = 83.7 bits (207), Expect = 1e-22
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 22/119 (18%)
Query: 26 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIV 82
+ ADN+GA+ + +I V G + A +GD+V+ATVK P + +V+ AV+V
Sbjct: 8 LKVADNSGAREVLVIKVLGG----SGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVV 63
Query: 83 RQRKPWRRKDGVFMYFE--------------GSAITGPIGKECADL-WPRIASAANAIV 126
R ++ RR DG ++ F+ G+ I GP+ +E D + +I S A ++
Sbjct: 64 RTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI 122
>d1ig0a2 c.100.1.1 (A:3-223) Thiamin pyrophosphokinase, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 221
Score = 28.9 bits (64), Expect = 0.13
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 28 CADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
CAD A LY R+ LP+ +GD+
Sbjct: 65 CADG-AANRLYDYLDDDETLRIKYLPNYIIGDL 96
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
{Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Length = 690
Score = 26.4 bits (58), Expect = 1.2
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 36 NLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVF 95
+LY GIK + + + ++ + + K P V+ + W D F
Sbjct: 142 DLY---EGGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMT-DEEF 197
Query: 96 MY 97
Sbjct: 198 AR 199
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 24.6 bits (52), Expect = 3.9
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 69 KPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEGSAITG 105
K DL + ++ + +D + S
Sbjct: 113 KRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEK 149
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 24.6 bits (52), Expect = 3.9
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 56 CVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEGSAITG 105
+ K D+++ + A I + K KD + A+TG
Sbjct: 112 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTG 161
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 24.3 bits (51), Expect = 4.9
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 56 CVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEGSAITG 105
+ V K D+ + + + + KD + F+ SA G
Sbjct: 102 EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKG 151
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 23.8 bits (50), Expect = 7.1
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 70 PDLRKKVMPAVIVRQRKPWRRKDGVFMYFEGSAITG 105
L + V Q + ++ G Y E SA+T
Sbjct: 133 ARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQ 168
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 458,069
Number of extensions: 19275
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 10
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)