RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 033154
(126 letters)
>gnl|CDD|181574 PRK08881, rpsN, 30S ribosomal protein S14; Reviewed.
Length = 101
Score = 101 bits (255), Expect = 2e-29
Identities = 47/92 (51%), Positives = 58/92 (63%)
Query: 35 DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGR 94
+ KR+ L K+ KR K++ D NL E R + KL +LPRNSS TRLRNRC TGR
Sbjct: 10 EKKRKKLVAKYAAKRAELKAIISDPNLSDEERYEARLKLQKLPRNSSPTRLRNRCELTGR 69
Query: 95 SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
R Y KF +SRI R LA++G + GV KASW
Sbjct: 70 PRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101
>gnl|CDD|214354 CHL00074, rps14, ribosomal protein S14.
Length = 100
Score = 84.9 bits (211), Expect = 1e-22
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 37 KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 96
KR+ L K+ LKR+ K + V+ +E E + KL LPRNS+ TRL NRC TGR R
Sbjct: 12 KRQKLVQKYHLKRRSLKKEIKKVSSLSEKWEIH-GKLQSLPRNSAPTRLHNRCFLTGRPR 70
Query: 97 AVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
Y F +SR V R +A+ +L GV K+SW
Sbjct: 71 GNYRDFGLSRHVLREMAHACLLPGVTKSSW 100
>gnl|CDD|201115 pfam00253, Ribosomal_S14, Ribosomal protein S14p/S29e. This family
includes both ribosomal S14 from prokaryotes and S29
from eukaryotes.
Length = 53
Score = 74.9 bits (185), Expect = 2e-19
Identities = 33/52 (63%), Positives = 42/52 (80%)
Query: 72 KLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKK 123
KL++LPRNSS TR+RNRC+ TGR R V KF +SRI FR LA++G++ GVKK
Sbjct: 2 KLSKLPRNSSPTRIRNRCVLTGRPRGVIRKFGLSRICFRELAHKGLIPGVKK 53
>gnl|CDD|223277 COG0199, RpsN, Ribosomal protein S14 [Translation, ribosomal
structure and biogenesis].
Length = 61
Score = 73.8 bits (182), Expect = 6e-19
Identities = 32/61 (52%), Positives = 36/61 (59%)
Query: 66 REKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKAS 125
R KL LPR S R RNRC GR R V KF + RI FR LA++G + GVKKAS
Sbjct: 1 RAMAKLKLKALPRPKSPGRGRNRCRRCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKAS 60
Query: 126 W 126
W
Sbjct: 61 W 61
>gnl|CDD|181216 PRK08061, rpsN, 30S ribosomal protein S14; Reviewed.
Length = 61
Score = 56.8 bits (138), Expect = 3e-12
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 83 TRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
R RC GR +VY KF + RI FR LA +G + GVKKASW
Sbjct: 18 VRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
>gnl|CDD|180742 PRK06911, rpsN, 30S ribosomal protein S14; Reviewed.
Length = 100
Score = 43.9 bits (103), Expect = 9e-07
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 33 IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFT 92
+ + KR L K+ +R K L + + +V + KLA+LP NS+ R RC
Sbjct: 8 MRESKRAKLVEKYRQRRNELKQLIKSSD-DFQVIMESQAKLAKLPVNSNPVRYVTRCKQC 66
Query: 93 GRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
GR AVY KF + RI R G + G +K+SW
Sbjct: 67 GRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100
>gnl|CDD|191499 pfam06340, TcpF, Vibrio cholerae toxin co-regulated pilus
biosynthesis protein F. This family consists of several
Vibrio cholerae toxin co-regulated pilus biosynthesis
protein F (TcpF) sequences. TcpF is known to be a
secreted virulence protein but its exact function is
unknown.
Length = 310
Score = 28.7 bits (64), Expect = 0.87
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 30 KRNIEDHKRRLLATKFELKRKLYKSLY-----RDVNLPTEVREKYLCKLARLPRNSSFTR 84
R ED ++RL + + KLY Y D ++PT R++ L L L ++ +
Sbjct: 71 TRTKEDFQKRLNSGDYGGLEKLYIDYYLAQTTYDWHIPT--RDQ-LQTLVNLAKDGKLSS 127
Query: 85 LRNRCIFTGR 94
GR
Sbjct: 128 TLKSEYLKGR 137
>gnl|CDD|239388 cd03114, ArgK-like, The function of this protein family is unkown.
The protein sequences are similar to the ArgK protein in
E. coli. ArgK protein is a membrane ATPase which is
required for transporting arginine, ornithine and lysine
into the cells by the arginine and ornithine (AO system)
and lysine, arginine and ornithine (LAO) transport
systems.
Length = 148
Score = 27.3 bits (61), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 100 EKFRMSRI-----VF-RSLANQGMLMGVKKASW 126
++ RM R VF RSLA +G L G+ +A+
Sbjct: 49 DRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81
>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 27.3 bits (61), Expect = 2.3
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 101 KFRMSRI-----VF-RSLANQGMLMGVKKASW 126
+ RM R+ VF RS ++G L G+ +A+
Sbjct: 102 RIRMQRLAVDPGVFIRSSPSRGTLGGLSRATR 133
>gnl|CDD|148787 pfam07373, CAMP_factor, CAMP factor (Cfa). This family consists of
several bacterial CAMP factor (Cfa) proteins which seem
to be specific to Streptococcus species. The CAMP
reaction is a synergistic lysis of erythrocytes by the
interaction of an extracellular protein (CAMP factor)
produced by some streptococcal species with the
Staphylococcus aureus sphingomyelinase C (beta-toxin).
Length = 228
Score = 27.0 bits (60), Expect = 2.6
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 46 ELKRKLYKSL-YRDVNLPTEVREKYL-CKLARLPRNSSFTRLRNRCIFTGRSRAVY 99
+K K Y D+ PT+V Y+ KL + + F R ++ + +S VY
Sbjct: 136 AVKALEAKVQAYPDLK-PTDVATIYVKSKLDKTIWQTRFDR--DKKVLGKKSFDVY 188
>gnl|CDD|234506 TIGR04221, SecA2_Mycobac, accessory Sec system translocase SecA2,
Actinobacterial type. Members of this family are the
SecA2 subunit of the Mycobacterial type of accessory
secretory system. This family is quite different SecA2
of the Staph/Strep type (TIGR03714).
Length = 762
Score = 26.7 bits (59), Expect = 4.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 19 NFWRKMSTVSEKRNIEDHKR-RLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARL 76
N WR ++++R+I D +R LL T + ++ R L EV E L + AR
Sbjct: 594 NTWRYNQLIAQQRDIIDERRETLLDTDTAWQELSERAADRAAELKKEVSEDALERAARE 652
>gnl|CDD|147328 pfam05095, DUF687, Protein of unknown function (DUF687). This
family contains several uncharacterized Chlamydia
proteins.
Length = 542
Score = 26.6 bits (59), Expect = 4.7
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 91 FTGRSRAVYEKFRMSRIVFRSLANQGMLMGV 121
T R R+ E++R+ R++ L + +L+ +
Sbjct: 333 LTNR-RSRRERYRVIRLLALGLRSLALLVTL 362
>gnl|CDD|185087 PRK15133, PRK15133, microcin C ABC transporter permease YejB;
Provisional.
Length = 364
Score = 26.2 bits (58), Expect = 5.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 73 LARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRS 111
L L +NS +R + + T R++ V EK + + VFR+
Sbjct: 243 LTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRN 281
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell
surface and is extremely large (although apparently
lacking in repeat structure) and is important for the
process of invasion of the RBCs by the parasite. These
proteins are found in P. falciparum, P. vivax and P.
yoelii.
Length = 2757
Score = 26.6 bits (58), Expect = 5.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 32 NIEDHKRRLLATKFELKRKLYKSLYRDVN 60
NIE+ K LL E+K+ ++ + +D+N
Sbjct: 726 NIENKKNELLDIIVEIKKHIHGEINKDLN 754
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 25.8 bits (57), Expect = 7.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 31 RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLP 77
+ED +R L + + K +L+ L R NL E + L +LP
Sbjct: 109 ALLEDLDKRALLKELKSKSRLFTPLARKTNLTPEQAARIAELLLKLP 155
>gnl|CDD|148484 pfam06887, DUF1265, Protein of unknown function (DUF1265). This
family represents a conserved region approximately 50
residues long within a number of proteins of unknown
function that seem to be restricted to C. elegans. The
GO annotation for this protein indicate that its a
protein involved in nematode larval development and has
a positive regulation on growth rate.
Length = 48
Score = 24.3 bits (53), Expect = 7.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 69 YLCKLARLPRNSSFTRLRNRCIFT 92
Y+C L + ++ FT ++ CI T
Sbjct: 12 YVCNLLIVAEDAKFTNVQECCIAT 35
>gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase;
Provisional.
Length = 351
Score = 25.7 bits (57), Expect = 7.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 90 IFTGRSRAVYEKFRMSRIVFRSLANQGMLM 119
+F + + +F S VF+SL +QG+++
Sbjct: 291 VFDSETNYILARFTASSAVFKSLWDQGIIL 320
>gnl|CDD|235598 PRK05766, rps14P, 30S ribosomal protein S14P; Reviewed.
Length = 52
Score = 24.1 bits (53), Expect = 8.7
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 74 ARLPRNSSFTRLRNRCIFTGRSRAVYEKF--RMSRIVFRSLANQGMLMGVKK 123
+ P+ + + C GR + + K+ + R FR +A + +G KK
Sbjct: 2 YKPPKKRKYGKGARECQRCGRKQGLIRKYGLYLCRQCFREVAPK---LGFKK 50
>gnl|CDD|218114 pfam04501, Baculo_VP39, Baculovirus major capsid protein VP39.
This family constitutes the 39 kDa major capsid protein
of the Baculoviridae.
Length = 300
Score = 25.4 bits (56), Expect = 9.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 73 LARLPRNSSFTRLRNRCIFTG 93
+A +P S+ +R++N CIF
Sbjct: 1 MALVPAGSASSRMKNYCIFGA 21
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.133 0.390
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,212,837
Number of extensions: 535752
Number of successful extensions: 604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 24
Length of query: 126
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 41
Effective length of database: 7,167,512
Effective search space: 293867992
Effective search space used: 293867992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.5 bits)