RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 033154
         (126 letters)



>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli
           [TaxId: 562]}
          Length = 100

 Score = 92.2 bits (229), Expect = 3e-26
 Identities = 42/92 (45%), Positives = 53/92 (57%)

Query: 35  DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGR 94
           + KR  LA K+  KR   K++  DVN   E R   + KL  LPR+SS +R RNRC  TGR
Sbjct: 9   EVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGR 68

Query: 95  SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
                 KF +SRI  R  A +G + G+KKASW
Sbjct: 69  PHGFLRKFGLSRIKVREAAMRGEIPGLKKASW 100


>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus
           thermophilus [TaxId: 274]}
          Length = 60

 Score = 73.1 bits (180), Expect = 3e-19
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 66  REKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKAS 125
           R+  + K  R P+     R   RC+  GR+R+VY  F + RI  R LA++G L GV+KAS
Sbjct: 2   RKALIEKAKRTPKFK--VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKAS 59

Query: 126 W 126
           W
Sbjct: 60  W 60


>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal
           domain {Barley (Hordeum vulgare) [TaxId: 4513]}
          Length = 388

 Score = 27.7 bits (60), Expect = 0.37
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 26  TVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLAR 75
            +   R I+D   R+L  KF +   L+++ Y D  +  ++ ++    LAR
Sbjct: 336 VIPMSR-IDDAVTRILRVKFTM--GLFENPYADPAMAEQLGKQEHRDLAR 382


>d2etva1 c.92.2.4 (A:25-358) Putative iron(III) transporter TM0189
           {Thermotoga maritima [TaxId: 2336]}
          Length = 334

 Score = 26.4 bits (57), Expect = 1.2
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 8   EKILSATSQCMNFWRKMSTVSEKR--NIEDHK------RRLLATKFELKRKLYKSLYRDV 59
             +L   S+   F+  +S V   +   I  +          LA  + + + LY   + D+
Sbjct: 231 SLVLDDYSKHREFYESLSAVKRGKVYGILPYNYYTTNIGTALADAYFIGKVLYPERFTDI 290

Query: 60  NLPTEVREKY 69
           +   +  E Y
Sbjct: 291 DPEEKADEIY 300


>d1kxla_ b.40.4.3 (A:) CDC13 ssDNA-binding domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 187

 Score = 25.6 bits (56), Expect = 1.8
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 9/57 (15%)

Query: 44  KFELKRKLYKS----LYRDVNL-----PTEVREKYLCKLARLPRNSSFTRLRNRCIF 91
           K  +K K+Y      + R+         + +     C+  RL    +F R+    I 
Sbjct: 119 KMNIKVKMYNGKLNAIVRECEPVPHSQISSIASPSQCEHLRLFYQRAFKRIGESAIS 175


>d1ciya2 b.77.2.1 (A:256-461) delta-Endotoxin (insectocide),
          middle domain {Bacillus thuringiensis, CRYIA (A)
          [TaxId: 1428]}
          Length = 206

 Score = 24.2 bits (52), Expect = 5.5
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 41 LATKFELKRKLYKS-LYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 96
          + T  +L R++Y + +  + +       + + +  R P       L +  I+T   R
Sbjct: 2  IRTVSQLTREIYTNPVLENFDGSFRGMAQRIEQNIRQPHL--MDILNSITIYTDVHR 56


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 24.4 bits (52), Expect = 5.8
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 27 VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLA 74
          +   ++ E   +R+      ++ K       D  L    ++KY+CKL 
Sbjct: 12 IRNCKSKEAEIKRINKELANIRSKFKG----DKALDGYSKKKYVCKLL 55


>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 453

 Score = 24.3 bits (52), Expect = 6.2
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 3   LAFSREKILSATSQCMNFWRKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLP 62
           + F +          ++     +  ++  ++ D     LA +F L RK  KS        
Sbjct: 281 VPFFKGDFTLQEYLKLDDGVLSTYFTQWMDVPDSILGDLAKRF-LMRKPLKSATFTNEKE 339

Query: 63  TEVREKYLCKLAR 75
           +     YL +L  
Sbjct: 340 SAATIAYLRELIE 352


>d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon
           Thermococcus litoralis [TaxId: 2265]}
          Length = 451

 Score = 24.0 bits (52), Expect = 6.5
 Identities = 4/31 (12%), Positives = 12/31 (38%), Gaps = 1/31 (3%)

Query: 96  RAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
             + ++  + RI F +     + +  +K   
Sbjct: 325 LKLIKETGVKRIHFHTYGYY-LALTREKGEH 354


>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 209

 Score = 23.8 bits (51), Expect = 7.8
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 7/81 (8%)

Query: 1   MALAFSREKILSATSQCMNFWRKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVN 60
            ALA +    ++        WR+   V   RN++  K    A     +   Y  +Y+ V 
Sbjct: 107 RALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPA---EGNRYDGIYKVVK 163

Query: 61  --LPTEVREKYLCK--LARLP 77
                      + +  L R  
Sbjct: 164 YWPERGKSGFLVWRYLLRRDD 184


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 438,000
Number of extensions: 18350
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 16
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.4 bits)