AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>033158
MALLVPGGGCARLAISHPAQVSRRTAVVATLSPPKRDKVDYWVDATSSFFEPDSRPIMLY
DGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRYAD
IIFSVF

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT1G52590 AT1G52590 AT1G52590	protein from Arabidopsis thaliana	1.2e-35
BLAST match view associations BLAST with PSPPH_0898 PSPPH_0898 PSPPH_0898 Uncharacterized protein	protein from Pseudomonas syringae pv. phaseolicola 1448A	1.5e-10
BLAST match view associations BLAST with PSPTO_4436 PSPTO_4436 PSPTO_4436 Uncharacterized protein	protein from Pseudomonas syringae pv. tomato str. DC3000	2.0e-08
BLAST match view associations BLAST with CPS_2420 CPS_2420 CPS_2420 Putative uncharacterized protein	protein from Colwellia psychrerythraea 34H	0.00010
BLAST match view associations BLAST with CPS_2420 CPS_2420 CPS_2420 conserved hypothetical protein	protein from Colwellia psychrerythraea 34H	0.00010

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033158
        (126 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2035159 - symbol:AT1G52590 "AT1G52590" species...   385  1.2e-35   1
UNIPROTKB|Q48N48 - symbol:PSPPH_0898 "Uncharacterized pro...   148  1.5e-10   1
UNIPROTKB|Q87WV7 - symbol:PSPTO_4436 "Uncharacterized pro...   128  2.0e-08   1
UNIPROTKB|Q481Y2 - symbol:CPS_2420 "Putative uncharacteri...    93  0.00010   1
TIGR_CMR|CPS_2420 - symbol:CPS_2420 "conserved hypothetic...    93  0.00010   1


>TAIR|locus:2035159 [details] [associations]
            symbol:AT1G52590 "AT1G52590" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0010287 "plastoglobule"
            evidence=IDA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0010287
            EMBL:AC008016 EMBL:AK117491 EMBL:BT005075 EMBL:AY088239
            IPI:IPI00548613 PIR:F96566 RefSeq:NP_564611.1 UniGene:At.37569
            UniGene:At.37570 STRING:Q9SSR1 PaxDb:Q9SSR1 PRIDE:Q9SSR1
            DNASU:841691 EnsemblPlants:AT1G52590.1 GeneID:841691
            KEGG:ath:AT1G52590 TAIR:At1g52590 eggNOG:COG3011
            HOGENOM:HOG000029296 InParanoid:Q9SSR1 OMA:IAKNRYK PhylomeDB:Q9SSR1
            ProtClustDB:CLSN2688726 Genevestigator:Q9SSR1 InterPro:IPR007263
            Pfam:PF04134 Uniprot:Q9SSR1
        Length = 172

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 80/117 (68%), Positives = 90/117 (76%)

Query:     1 MALLVPGGGCARLAISHPAQVSRRTAVVATLSPPKRDKVDYWVDATSSFFEPDSRPIMLY 60
             MA+L+P     RL I+  AQV  R +  A     +RD VD WV  TSSFFE D RPIML+
Sbjct:     1 MAILIPAS-FGRLTITSRAQVRVRVSASANQRTIRRDSVD-WVKETSSFFEEDKRPIMLF 58

Query:    61 DGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDR 117
             DGVCNLCNGGVKFVRD+D+NR IR+EALQSE+GKKLL RSGRAPDDISSVVLVE DR
Sbjct:    59 DGVCNLCNGGVKFVRDHDRNRSIRFEALQSEAGKKLLLRSGRAPDDISSVVLVENDR 115


>UNIPROTKB|Q48N48 [details] [associations]
            symbol:PSPPH_0898 "Uncharacterized protein" species:264730
            "Pseudomonas syringae pv. phaseolicola 1448A" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            EMBL:CP000058 GenomeReviews:CP000058_GR eggNOG:COG3011
            HOGENOM:HOG000029296 InterPro:IPR007263 Pfam:PF04134
            RefSeq:YP_273173.1 STRING:Q48N48 GeneID:3559217 KEGG:psp:PSPPH_0898
            PATRIC:19970877 OMA:DECHEAL ProtClustDB:CLSK749687 Uniprot:Q48N48
        Length = 122

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 28/69 (40%), Positives = 47/69 (68%)

Query:    49 FFEPDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRAPDDIS 108
             + +PD   ++L+DGVC LCNG VKF+  +D ++R+R  A+QSE G+ LL+ +G   DD  
Sbjct:     9 YLKPDEC-VVLFDGVCKLCNGVVKFLIRHDPHQRLRLAAVQSEQGQALLKWAGLPLDDFH 67

Query:   109 SVVLVEKDR 117
             ++ ++  +R
Sbjct:    68 TIAVIVNNR 76


>UNIPROTKB|Q87WV7 [details] [associations]
            symbol:PSPTO_4436 "Uncharacterized protein" species:223283
            "Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG3011
            HOGENOM:HOG000029296 InterPro:IPR007263 Pfam:PF04134
            RefSeq:NP_794190.1 DNASU:1186117 GeneID:1186117 KEGG:pst:PSPTO_4436
            PATRIC:20000384 OMA:FIKSEAV ProtClustDB:CLSK2485111
            BioCyc:PSYR223283:GJIX-4502-MONOMER Uniprot:Q87WV7
        Length = 150

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query:    57 IMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKD 116
             ++L+DGVC LCNG  KF+  +D+ +RIR   +QS  G+ LL  +G   D   ++  V  D
Sbjct:    20 VVLFDGVCKLCNGWAKFIIRHDRRQRIRLATVQSPEGQALLEWAGLPLDRFDTMAAVTGD 79

Query:   117 R 117
             R
Sbjct:    80 R 80


>UNIPROTKB|Q481Y2 [details] [associations]
            symbol:CPS_2420 "Putative uncharacterized protein"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG3011
            HOGENOM:HOG000029296 OMA:IAKNRYK InterPro:IPR007263 Pfam:PF04134
            RefSeq:YP_269136.1 STRING:Q481Y2 DNASU:3519715 GeneID:3519715
            KEGG:cps:CPS_2420 BioCyc:CPSY167879:GI48-2483-MONOMER
            Uniprot:Q481Y2
        Length = 148

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query:    57 IMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKD 116
             ++L+DGVC LC+   +F+   D  +R +  ++QS  G+ +L       D   +++LVE +
Sbjct:    16 VILFDGVCKLCDFWTQFIVKVDTQQRFKLCSVQSPEGQSILNYFKMPTDHFDTMLLVEGN 75

Query:   117 RYAD 120
             +  D
Sbjct:    76 QCFD 79


>TIGR_CMR|CPS_2420 [details] [associations]
            symbol:CPS_2420 "conserved hypothetical protein"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG3011
            HOGENOM:HOG000029296 OMA:IAKNRYK InterPro:IPR007263 Pfam:PF04134
            RefSeq:YP_269136.1 STRING:Q481Y2 DNASU:3519715 GeneID:3519715
            KEGG:cps:CPS_2420 BioCyc:CPSY167879:GI48-2483-MONOMER
            Uniprot:Q481Y2
        Length = 148

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query:    57 IMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKD 116
             ++L+DGVC LC+   +F+   D  +R +  ++QS  G+ +L       D   +++LVE +
Sbjct:    16 VILFDGVCKLCDFWTQFIVKVDTQQRFKLCSVQSPEGQSILNYFKMPTDHFDTMLLVEGN 75

Query:   117 RYAD 120
             +  D
Sbjct:    76 QCFD 79


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126       126   0.00091  102 3  11 22  0.36    31
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  125 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.35u 0.13s 12.48t   Elapsed:  00:00:00
  Total cpu time:  12.35u 0.13s 12.48t   Elapsed:  00:00:00
  Start:  Fri May 10 16:20:21 2013   End:  Fri May 10 16:20:21 2013

Back to top

the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data