BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033158
         (126 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XFU|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
           Mutant, Ef-delta 64 In Complex With Calmodulin
 pdb|1XFU|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
           Mutant, Ef-delta 64 In Complex With Calmodulin
 pdb|1XFU|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
           Mutant, Ef-delta 64 In Complex With Calmodulin
 pdb|1XFU|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
           Mutant, Ef-delta 64 In Complex With Calmodulin
 pdb|1XFU|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
           Mutant, Ef-delta 64 In Complex With Calmodulin
 pdb|1XFU|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
           Mutant, Ef-delta 64 In Complex With Calmodulin
          Length = 747

 Score = 29.3 bits (64), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 45  ATSSFFEPDSRPIM------LYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLR 98
           A S +F PD R ++      +++ +  L  GG + + ++ K   +  + +    G+K L+
Sbjct: 191 AFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLKKEGVEKDRIDVLKGEKALK 250

Query: 99  RSGRAPDDISSVVLVEKDRYADIIF 123
            SG  P+   +   + ++    I+F
Sbjct: 251 ASGLVPEHADAFKKIARELNTYILF 275


>pdb|1XFV|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And 3' Deoxy-Atp
 pdb|1XFV|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And 3' Deoxy-Atp
 pdb|1XFV|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And 3' Deoxy-Atp
 pdb|1XFV|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And 3' Deoxy-Atp
 pdb|1XFV|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And 3' Deoxy-Atp
 pdb|1XFV|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And 3' Deoxy-Atp
 pdb|1XFW|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And 3'5' Cyclic Amp (Camp)
 pdb|1XFW|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And 3'5' Cyclic Amp (Camp)
 pdb|1XFW|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And 3'5' Cyclic Amp (Camp)
 pdb|1XFW|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And 3'5' Cyclic Amp (Camp)
 pdb|1XFW|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And 3'5' Cyclic Amp (Camp)
 pdb|1XFW|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And 3'5' Cyclic Amp (Camp)
 pdb|1XFX|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin In The Presence Of 10 Millimolar
           Exogenously Added Calcium Chloride
 pdb|1XFX|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin In The Presence Of 10 Millimolar
           Exogenously Added Calcium Chloride
 pdb|1XFX|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin In The Presence Of 10 Millimolar
           Exogenously Added Calcium Chloride
 pdb|1XFX|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin In The Presence Of 10 Millimolar
           Exogenously Added Calcium Chloride
 pdb|1XFX|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin In The Presence Of 10 Millimolar
           Exogenously Added Calcium Chloride
 pdb|1XFX|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin In The Presence Of 10 Millimolar
           Exogenously Added Calcium Chloride
 pdb|1XFY|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin
 pdb|1XFY|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin
 pdb|1XFY|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin
 pdb|1XFY|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin
 pdb|1XFY|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin
 pdb|1XFY|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin
 pdb|1XFZ|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
           With Calmodulin In The Presence Of 1 Millimolar
           Exogenously Added Calcium Chloride
 pdb|1XFZ|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
           With Calmodulin In The Presence Of 1 Millimolar
           Exogenously Added Calcium Chloride
 pdb|1XFZ|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
           With Calmodulin In The Presence Of 1 Millimolar
           Exogenously Added Calcium Chloride
 pdb|1XFZ|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
           With Calmodulin In The Presence Of 1 Millimolar
           Exogenously Added Calcium Chloride
 pdb|1XFZ|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
           With Calmodulin In The Presence Of 1 Millimolar
           Exogenously Added Calcium Chloride
 pdb|1XFZ|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
           With Calmodulin In The Presence Of 1 Millimolar
           Exogenously Added Calcium Chloride
 pdb|1Y0V|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And Pyrophosphate
 pdb|1Y0V|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And Pyrophosphate
 pdb|1Y0V|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And Pyrophosphate
 pdb|1Y0V|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And Pyrophosphate
 pdb|1Y0V|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And Pyrophosphate
 pdb|1Y0V|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
           With Calmodulin And Pyrophosphate
          Length = 777

 Score = 29.3 bits (64), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 45  ATSSFFEPDSRPIM------LYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLR 98
           A S +F PD R ++      +++ +  L  GG + + ++ K   +  + +    G+K L+
Sbjct: 221 AFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLKKEGVEKDRIDVLKGEKALK 280

Query: 99  RSGRAPDDISSVVLVEKDRYADIIF 123
            SG  P+   +   + ++    I+F
Sbjct: 281 ASGLVPEHADAFKKIARELNTYILF 305


>pdb|3RPK|A Chain A, Structure Of The Full-Length Major Pilin Rrgb From
           Streptococcus Pneumoniae
 pdb|3RPK|B Chain B, Structure Of The Full-Length Major Pilin Rrgb From
           Streptococcus Pneumoniae
          Length = 603

 Score = 27.3 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 39  VDYWVDATSSFFEPDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYE----ALQSESGK 94
           V  W D      +P    ++ Y         G KFV+ NDK+ R+       A    +G+
Sbjct: 401 VKNWKDENPKPLDPTEPKVVTY---------GKKFVKVNDKDNRLAGAEFVIANADNAGQ 451

Query: 95  KLLRRSGRAPDDISSVVLVEKD 116
            L R++ +   +   +V+  KD
Sbjct: 452 YLARKADKVSQEEKQLVVTTKD 473


>pdb|2Y1V|A Chain A, Full Length Structure Of Rrgb Pilus Protein From
           Streptococcus Pneumoniae
 pdb|2Y1V|B Chain B, Full Length Structure Of Rrgb Pilus Protein From
           Streptococcus Pneumoniae
 pdb|2Y1V|C Chain C, Full Length Structure Of Rrgb Pilus Protein From
           Streptococcus Pneumoniae
          Length = 605

 Score = 27.3 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 39  VDYWVDATSSFFEPDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYE----ALQSESGK 94
           V  W D      +P    ++ Y         G KFV+ NDK+ R+       A    +G+
Sbjct: 398 VKNWKDENPKPLDPTEPKVVTY---------GKKFVKVNDKDNRLAGAEFVIANADNAGQ 448

Query: 95  KLLRRSGRAPDDISSVVLVEKD 116
            L R++ +   +   +V+  KD
Sbjct: 449 YLARKADKVSQEEKQLVVTTKD 470


>pdb|2X9Y|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
           Pneumoniae
          Length = 444

 Score = 26.9 bits (58), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 39  VDYWVDATSSFFEPDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYE----ALQSESGK 94
           V  W D      +P    ++ Y         G KFV+ NDK+ R+       A    +G+
Sbjct: 243 VKNWKDENPKPLDPTEPKVVTY---------GKKFVKVNDKDNRLAGAEFVIANADNAGQ 293

Query: 95  KLLRRSGRAPDDISSVVLVEKD 116
            L R++ +   +   +V+  KD
Sbjct: 294 YLARKADKVSQEEKQLVVTTKD 315


>pdb|2X9W|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
           Pneumoniae
 pdb|2X9X|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
           Pneumoniae
          Length = 444

 Score = 26.9 bits (58), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 39  VDYWVDATSSFFEPDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYE----ALQSESGK 94
           V  W D      +P    ++ Y         G KFV+ NDK+ R+       A    +G+
Sbjct: 243 VKNWKDENPKPLDPTEPKVVTY---------GKKFVKVNDKDNRLAGAEFVIANADNAGQ 293

Query: 95  KLLRRSGRAPDDISSVVLVEKD 116
            L R++ +   +   +V+  KD
Sbjct: 294 YLARKADKVSQEEKQLVVTTKD 315


>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
           Protein From Bacteroides Thetaiotaomicron
          Length = 1000

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 43  VDATSSFFE-PDSRPIMLYDGVCNLCNGGVKFVRDND------KNRRIRYEALQSESGKK 95
           +D T   +E   + P ++   + N    G+ F R  D      KNR ++YE  +      
Sbjct: 436 IDRTRRXYERSKNHPSVVIWSLGNEAGNGINFERTYDWLKSVEKNRPVQYERAEENYNTD 495

Query: 96  LLRRSGRAPDDISSVVLVEKDRYADIIF 123
           +  R  R+ D I + V V KD Y   I 
Sbjct: 496 IYCRXYRSVDVIRNYV-VRKDIYRPFIL 522


>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
           Prote
 pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
           Prote
          Length = 367

 Score = 26.2 bits (56), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 24  RTAVVATLSPPKRDKVDY 41
           + +V+ T SPPK DK++Y
Sbjct: 110 KLSVITTTSPPKADKLEY 127


>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
            Domain
 pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
            Domain
          Length = 3367

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 37   DKVDYWVDATS---SFFEPDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESG 93
            D +DYWVD  S   S  +PD  P +    +      G +   DN+ + R+ Y  L+    
Sbjct: 2945 DSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRI--DNEFDMRLLYSFLE---- 2998

Query: 94   KKLLRRSGRAPD 105
             +L   S   PD
Sbjct: 2999 -QLFTPSAFNPD 3009


>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
            Domain
 pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
            Domain
          Length = 3245

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 37   DKVDYWVDATS---SFFEPDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESG 93
            D +DYWVD  S   S  +PD  P +    +      G +   DN+ + R+ Y  L+    
Sbjct: 2823 DSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRI--DNEFDMRLLYSFLE---- 2876

Query: 94   KKLLRRSGRAPD 105
             +L   S   PD
Sbjct: 2877 -QLFTPSAFNPD 2887


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,706,925
Number of Sequences: 62578
Number of extensions: 137215
Number of successful extensions: 246
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 11
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)