Query 033158
Match_columns 126
No_of_seqs 132 out of 533
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 10:32:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3011 Predicted thiol-disulf 99.8 2.3E-19 4.9E-24 134.4 7.8 74 52-125 6-82 (137)
2 PF04134 DUF393: Protein of un 99.7 1E-16 2.2E-21 112.5 5.5 68 58-125 1-73 (114)
3 cd02982 PDI_b'_family Protein 94.1 0.28 6.2E-06 32.5 6.4 61 55-115 15-77 (103)
4 TIGR01126 pdi_dom protein disu 92.6 1.1 2.3E-05 29.2 7.3 61 55-117 16-80 (102)
5 PTZ00051 thioredoxin; Provisio 91.9 0.6 1.3E-05 30.7 5.4 62 55-118 21-83 (98)
6 PF13728 TraF: F plasmid trans 91.4 0.52 1.1E-05 37.2 5.4 58 55-114 123-191 (215)
7 cd02949 TRX_NTR TRX domain, no 90.7 1.4 3E-05 29.5 6.3 61 56-118 17-79 (97)
8 COG3019 Predicted metal-bindin 90.7 1.4 3E-05 33.8 6.9 68 52-124 24-98 (149)
9 PF00085 Thioredoxin: Thioredo 90.4 0.86 1.9E-05 29.6 5.0 62 55-118 20-83 (103)
10 cd02973 TRX_GRX_like Thioredox 89.2 1.3 2.8E-05 27.4 4.9 48 55-102 2-50 (67)
11 cd02961 PDI_a_family Protein D 89.0 3.1 6.8E-05 26.3 6.8 60 55-116 18-81 (101)
12 TIGR02200 GlrX_actino Glutared 88.4 3.4 7.4E-05 25.6 6.5 42 56-99 2-44 (77)
13 PRK11657 dsbG disulfide isomer 88.2 0.61 1.3E-05 37.5 3.6 36 53-88 118-155 (251)
14 cd03004 PDI_a_ERdj5_C PDIa fam 88.2 1.9 4.1E-05 28.8 5.5 59 56-116 23-83 (104)
15 TIGR01068 thioredoxin thioredo 87.9 3 6.5E-05 26.8 6.2 62 55-118 17-80 (101)
16 cd02947 TRX_family TRX family; 87.4 2.4 5.3E-05 26.1 5.4 60 56-117 14-74 (93)
17 cd03003 PDI_a_ERdj5_N PDIa fam 87.3 2.3 5E-05 28.3 5.5 60 56-117 22-83 (101)
18 PRK10877 protein disulfide iso 86.7 0.89 1.9E-05 36.1 3.7 35 52-86 107-142 (232)
19 TIGR00411 redox_disulf_1 small 86.6 2 4.3E-05 27.1 4.7 48 56-103 3-52 (82)
20 PRK13703 conjugal pilus assemb 86.5 0.55 1.2E-05 38.3 2.5 37 54-90 145-183 (248)
21 cd02966 TlpA_like_family TlpA- 86.5 1.9 4.1E-05 27.7 4.6 38 55-92 22-62 (116)
22 cd03020 DsbA_DsbC_DsbG DsbA fa 85.6 1.3 2.9E-05 33.5 4.0 36 52-87 77-112 (197)
23 cd02984 TRX_PICOT TRX domain, 85.4 3.6 7.9E-05 26.8 5.6 61 56-118 18-80 (97)
24 cd02989 Phd_like_TxnDC9 Phosdu 84.9 3.9 8.4E-05 28.6 5.9 61 56-118 26-87 (113)
25 cd03001 PDI_a_P5 PDIa family, 84.4 3.4 7.5E-05 27.0 5.2 59 56-116 22-82 (103)
26 TIGR02739 TraF type-F conjugat 84.1 0.87 1.9E-05 37.3 2.6 37 55-91 153-191 (256)
27 cd02997 PDI_a_PDIR PDIa family 84.0 2.9 6.4E-05 27.3 4.7 60 56-117 21-86 (104)
28 cd02975 PfPDO_like_N Pyrococcu 83.7 6.3 0.00014 27.5 6.5 59 55-115 24-84 (113)
29 cd02956 ybbN ybbN protein fami 83.4 7.9 0.00017 25.2 6.6 61 56-118 16-78 (96)
30 cd01659 TRX_superfamily Thiore 83.0 5.8 0.00013 21.7 5.5 36 57-92 2-40 (69)
31 cd02995 PDI_a_PDI_a'_C PDIa fa 82.9 5.3 0.00011 26.0 5.6 59 56-117 22-84 (104)
32 cd02972 DsbA_family DsbA famil 82.6 2.4 5.2E-05 26.7 3.7 22 56-77 1-22 (98)
33 cd03002 PDI_a_MPD1_like PDI fa 82.3 5.5 0.00012 26.4 5.6 60 55-116 21-84 (109)
34 cd03026 AhpF_NTD_C TRX-GRX-lik 82.2 3.2 6.9E-05 28.2 4.4 52 52-103 12-64 (89)
35 cd02996 PDI_a_ERp44 PDIa famil 81.7 5.4 0.00012 26.9 5.4 60 56-117 22-89 (108)
36 TIGR02180 GRX_euk Glutaredoxin 81.7 3.7 8E-05 26.0 4.4 34 57-90 2-35 (84)
37 cd02957 Phd_like Phosducin (Ph 81.3 7.9 0.00017 26.6 6.3 60 56-118 28-88 (113)
38 cd03023 DsbA_Com1_like DsbA fa 80.7 2.3 4.9E-05 29.6 3.3 35 54-88 7-44 (154)
39 cd02998 PDI_a_ERp38 PDIa famil 79.3 5.8 0.00013 25.8 4.8 60 55-116 21-85 (105)
40 PF13098 Thioredoxin_2: Thiore 77.9 1.8 3.9E-05 29.1 2.1 23 54-76 7-29 (112)
41 cd02967 mauD Methylamine utili 77.5 7.8 0.00017 25.9 5.1 49 55-103 24-77 (114)
42 PRK09381 trxA thioredoxin; Pro 77.4 12 0.00025 25.1 6.0 61 56-118 25-87 (109)
43 TIGR02196 GlrX_YruB Glutaredox 76.6 13 0.00028 22.3 5.5 45 56-102 2-48 (74)
44 TIGR01295 PedC_BrcD bacterioci 76.3 12 0.00027 26.6 6.2 63 56-118 27-102 (122)
45 TIGR02740 TraF-like TraF-like 75.8 8.2 0.00018 31.4 5.7 61 52-114 166-237 (271)
46 TIGR02187 GlrX_arch Glutaredox 75.8 12 0.00027 28.7 6.4 61 55-117 22-88 (215)
47 PF08534 Redoxin: Redoxin; In 75.7 4.6 0.0001 28.4 3.8 52 50-101 26-84 (146)
48 cd02066 GRX_family Glutaredoxi 74.7 14 0.00031 21.8 5.4 34 56-91 2-35 (72)
49 TIGR00365 monothiol glutaredox 74.3 15 0.00032 25.2 5.9 43 55-99 12-61 (97)
50 TIGR02187 GlrX_arch Glutaredox 74.2 13 0.00028 28.6 6.2 61 55-117 136-197 (215)
51 TIGR03759 conj_TIGR03759 integ 73.6 9.7 0.00021 30.5 5.4 67 52-118 108-179 (200)
52 TIGR02738 TrbB type-F conjugat 73.2 4.2 9.2E-05 30.5 3.2 57 24-90 32-90 (153)
53 cd03019 DsbA_DsbA DsbA family, 72.9 7.7 0.00017 27.9 4.4 26 52-77 15-40 (178)
54 cd02962 TMX2 TMX2 family; comp 72.8 13 0.00028 27.9 5.7 63 56-118 51-120 (152)
55 PRK10996 thioredoxin 2; Provis 72.7 22 0.00048 25.6 6.8 62 55-118 55-118 (139)
56 cd03011 TlpA_like_ScsD_MtbDsbE 72.1 14 0.0003 25.0 5.4 33 55-87 23-55 (123)
57 cd03419 GRX_GRXh_1_2_like Glut 72.0 8.1 0.00018 24.4 3.9 33 56-90 2-34 (82)
58 cd02970 PRX_like2 Peroxiredoxi 72.0 8.2 0.00018 26.8 4.3 35 57-91 28-66 (149)
59 cd02965 HyaE HyaE family; HyaE 71.5 21 0.00046 25.7 6.4 65 52-118 26-95 (111)
60 COG4545 Glutaredoxin-related p 71.3 8.7 0.00019 26.8 4.1 37 55-93 3-39 (85)
61 cd03027 GRX_DEP Glutaredoxin ( 70.5 13 0.00027 23.5 4.6 34 55-90 2-35 (73)
62 PF06053 DUF929: Domain of unk 70.0 9.1 0.0002 31.4 4.6 51 41-92 45-99 (249)
63 cd03005 PDI_a_ERp46 PDIa famil 69.7 17 0.00036 23.6 5.2 61 55-117 19-84 (102)
64 cd02950 TxlA TRX-like protein 68.6 28 0.00061 25.2 6.6 61 56-118 24-89 (142)
65 cd02948 TRX_NDPK TRX domain, T 68.3 22 0.00048 23.9 5.7 60 56-118 21-83 (102)
66 cd02954 DIM1 Dim1 family; Dim1 65.0 41 0.00089 24.2 6.8 61 56-118 18-80 (114)
67 PTZ00102 disulphide isomerase; 64.8 27 0.00058 29.4 6.6 61 55-117 52-117 (477)
68 cd02963 TRX_DnaJ TRX domain, D 64.6 19 0.00041 24.7 4.8 62 55-118 27-91 (111)
69 cd03028 GRX_PICOT_like Glutare 64.1 24 0.00053 23.5 5.2 44 54-99 7-57 (90)
70 PF01323 DSBA: DSBA-like thior 63.6 6.6 0.00014 28.7 2.4 34 56-89 2-38 (193)
71 cd03418 GRX_GRXb_1_3_like Glut 62.8 18 0.0004 22.4 4.2 44 56-101 2-47 (75)
72 cd02992 PDI_a_QSOX PDIa family 62.6 37 0.0008 23.5 6.0 60 56-117 23-89 (114)
73 cd02994 PDI_a_TMX PDIa family, 62.3 39 0.00084 22.1 5.9 62 55-118 19-83 (101)
74 PHA02125 thioredoxin-like prot 61.6 20 0.00043 22.9 4.2 43 56-102 2-44 (75)
75 cd02999 PDI_a_ERp44_like PDIa 60.7 19 0.00041 24.4 4.2 60 55-116 21-82 (100)
76 cd03010 TlpA_like_DsbE TlpA-li 60.5 12 0.00026 25.7 3.2 35 55-89 28-62 (127)
77 cd03000 PDI_a_TMX3 PDIa family 59.8 41 0.0009 22.3 5.7 60 56-117 19-83 (104)
78 cd02987 Phd_like_Phd Phosducin 59.0 38 0.00083 25.7 6.0 60 56-118 87-147 (175)
79 PRK13728 conjugal transfer pro 58.8 9.4 0.0002 29.8 2.6 34 55-88 72-105 (181)
80 PRK10638 glutaredoxin 3; Provi 58.6 35 0.00075 22.1 5.0 32 56-89 4-35 (83)
81 PF13462 Thioredoxin_4: Thiore 57.6 20 0.00044 25.2 4.1 21 55-75 15-35 (162)
82 cd03012 TlpA_like_DipZ_like Tl 57.5 31 0.00067 23.8 4.9 36 55-90 26-64 (126)
83 cd02951 SoxW SoxW family; SoxW 55.5 41 0.0009 23.1 5.3 59 55-115 17-93 (125)
84 PHA03050 glutaredoxin; Provisi 55.1 51 0.0011 23.2 5.7 36 54-89 13-49 (108)
85 PTZ00062 glutaredoxin; Provisi 54.3 40 0.00087 26.6 5.6 43 55-99 113-162 (204)
86 cd00340 GSH_Peroxidase Glutath 54.2 34 0.00074 24.6 4.8 34 55-89 25-61 (152)
87 cd03022 DsbA_HCCA_Iso DsbA fam 53.9 13 0.00029 27.1 2.7 33 57-89 2-36 (192)
88 PTZ00443 Thioredoxin domain-co 52.9 89 0.0019 24.9 7.4 62 55-118 55-118 (224)
89 PRK10329 glutaredoxin-like pro 52.2 61 0.0013 21.4 5.5 45 55-101 2-47 (81)
90 PRK10824 glutaredoxin-4; Provi 52.2 57 0.0012 23.5 5.7 43 55-99 15-64 (115)
91 KOG0910 Thioredoxin-like prote 51.4 33 0.00072 26.3 4.5 65 56-122 65-131 (150)
92 cd02985 TRX_CDSP32 TRX family, 51.2 64 0.0014 21.6 5.6 60 57-118 20-83 (103)
93 cd02953 DsbDgamma DsbD gamma f 50.9 70 0.0015 21.1 5.7 60 56-118 15-86 (104)
94 PF04423 Rad50_zn_hook: Rad50 48.8 4.2 9.1E-05 25.2 -0.6 10 61-70 20-29 (54)
95 PRK03147 thiol-disulfide oxido 48.1 59 0.0013 23.2 5.3 35 55-89 64-101 (173)
96 cd03036 ArsC_like Arsenate Red 47.8 41 0.00088 23.4 4.3 30 57-88 2-31 (111)
97 PF13192 Thioredoxin_3: Thiore 46.7 35 0.00076 21.9 3.5 43 60-103 6-48 (76)
98 PRK15412 thiol:disulfide inter 46.7 63 0.0014 24.2 5.4 33 55-88 71-103 (185)
99 KOG1422 Intracellular Cl- chan 45.7 25 0.00054 28.6 3.2 45 39-91 4-48 (221)
100 cd02969 PRX_like1 Peroxiredoxi 45.1 83 0.0018 22.8 5.7 36 55-90 28-66 (171)
101 PRK11200 grxA glutaredoxin 1; 45.0 35 0.00076 22.1 3.4 36 55-90 2-40 (85)
102 TIGR02661 MauD methylamine deh 44.5 42 0.00092 25.3 4.2 47 56-102 78-127 (189)
103 PRK10954 periplasmic protein d 43.4 30 0.00065 26.5 3.2 33 37-71 24-56 (207)
104 TIGR01617 arsC_related transcr 43.2 63 0.0014 22.5 4.7 47 57-105 2-53 (117)
105 PF00578 AhpC-TSA: AhpC/TSA fa 42.7 26 0.00056 23.5 2.5 37 52-88 25-65 (124)
106 TIGR02194 GlrX_NrdH Glutaredox 42.6 84 0.0018 19.6 5.5 42 58-101 3-45 (72)
107 cd03006 PDI_a_EFP1_N PDIa fami 42.6 90 0.0019 22.0 5.4 60 56-117 33-95 (113)
108 PF05768 DUF836: Glutaredoxin- 42.0 88 0.0019 20.4 5.0 43 58-102 4-48 (81)
109 TIGR02181 GRX_bact Glutaredoxi 41.3 90 0.0019 19.6 4.9 32 57-90 2-33 (79)
110 smart00594 UAS UAS domain. 39.6 60 0.0013 22.7 4.1 57 56-114 31-94 (122)
111 cd03024 DsbA_FrnE DsbA family, 39.0 40 0.00088 24.8 3.3 32 57-88 2-39 (201)
112 TIGR01130 ER_PDI_fam protein d 38.9 1.3E+02 0.0028 24.8 6.6 60 56-117 22-86 (462)
113 cd02988 Phd_like_VIAF Phosduci 38.9 75 0.0016 24.5 4.9 58 56-118 106-164 (192)
114 cd03040 GST_N_mPGES2 GST_N fam 38.8 39 0.00085 21.1 2.8 33 56-90 2-34 (77)
115 KOG4172 Predicted E3 ubiquitin 38.4 25 0.00053 23.2 1.7 17 61-77 43-59 (62)
116 cd02971 PRX_family Peroxiredox 38.4 53 0.0011 22.5 3.6 35 56-90 26-64 (140)
117 TIGR02190 GlrX-dom Glutaredoxi 37.4 1.1E+02 0.0024 19.5 5.9 37 53-91 7-43 (79)
118 TIGR00412 redox_disulf_2 small 36.4 1E+02 0.0022 19.7 4.6 43 57-102 3-47 (76)
119 cd03021 DsbA_GSTK DsbA family, 36.1 40 0.00086 25.7 2.9 35 55-89 2-38 (209)
120 COG2999 GrxB Glutaredoxin 2 [P 35.9 25 0.00054 28.3 1.8 14 57-71 3-16 (215)
121 cd03032 ArsC_Spx Arsenate Redu 34.9 89 0.0019 21.7 4.3 31 56-88 2-32 (115)
122 cd02977 ArsC_family Arsenate R 34.3 1.1E+02 0.0023 20.7 4.6 31 57-89 2-32 (105)
123 PHA02278 thioredoxin-like prot 33.6 1.6E+02 0.0035 20.3 6.4 62 55-118 17-84 (103)
124 cd03025 DsbA_FrnE_like DsbA fa 33.5 29 0.00064 25.3 1.7 25 55-79 2-26 (193)
125 cd02968 SCO SCO (an acronym fo 33.3 53 0.0012 22.6 3.0 38 52-89 22-66 (142)
126 COG0695 GrxC Glutaredoxin and 33.3 1.1E+02 0.0025 20.0 4.5 28 63-90 10-37 (80)
127 cd00158 RHOD Rhodanese Homolog 32.9 74 0.0016 19.6 3.4 26 52-77 48-73 (89)
128 PRK12559 transcriptional regul 32.9 1E+02 0.0022 22.4 4.5 31 56-88 2-32 (131)
129 cd03029 GRX_hybridPRX5 Glutare 32.6 1.2E+02 0.0027 18.7 4.7 35 56-92 3-37 (72)
130 PRK01655 spxA transcriptional 32.5 1.3E+02 0.0028 21.7 5.0 31 56-88 2-32 (131)
131 cd03009 TryX_like_TryX_NRX Try 31.8 1.7E+02 0.0037 20.0 6.3 22 55-76 21-42 (131)
132 TIGR00385 dsbE periplasmic pro 31.2 1.1E+02 0.0024 22.5 4.5 33 55-88 66-98 (173)
133 COG1651 DsbG Protein-disulfide 31.1 53 0.0012 25.2 2.9 24 53-76 85-108 (244)
134 TIGR02189 GlrX-like_plant Glut 29.5 1.4E+02 0.0029 20.4 4.5 40 55-96 9-49 (99)
135 smart00450 RHOD Rhodanese Homo 28.5 1.2E+02 0.0026 18.8 3.8 27 52-78 54-80 (100)
136 cd03055 GST_N_Omega GST_N fami 28.2 1.3E+02 0.0027 19.7 4.0 36 52-89 15-50 (89)
137 PTZ00056 glutathione peroxidas 28.0 1.3E+02 0.0029 23.0 4.6 48 55-102 42-103 (199)
138 cd03041 GST_N_2GST_N GST_N fam 27.9 71 0.0015 20.2 2.7 31 56-88 2-32 (77)
139 PF13905 Thioredoxin_8: Thiore 27.8 1.5E+02 0.0033 18.9 4.3 33 56-88 5-41 (95)
140 cd03072 PDI_b'_ERp44 PDIb' fam 27.6 1.4E+02 0.003 20.8 4.3 58 55-114 19-81 (111)
141 PF05184 SapB_1: Saposin-like 27.5 14 0.00031 20.7 -0.6 19 61-79 1-19 (39)
142 PF01878 EVE: EVE domain; Int 27.1 21 0.00046 25.7 0.0 37 40-79 1-42 (143)
143 PF03660 PHF5: PHF5-like prote 26.5 23 0.0005 25.8 0.1 13 61-73 27-39 (106)
144 cd02993 PDI_a_APS_reductase PD 26.5 2E+02 0.0044 19.2 6.3 58 55-114 24-86 (109)
145 PLN00410 U5 snRNP protein, DIM 26.2 2.8E+02 0.0061 20.7 5.9 60 56-117 27-89 (142)
146 TIGR02183 GRXA Glutaredoxin, G 25.3 2E+02 0.0044 18.8 5.6 34 57-90 3-39 (86)
147 cd03060 GST_N_Omega_like GST_N 24.7 1.7E+02 0.0036 17.9 3.9 32 56-89 1-32 (71)
148 cd02976 NrdH NrdH-redoxin (Nrd 24.5 1.6E+02 0.0034 17.3 4.8 31 57-89 3-33 (73)
149 PF00752 XPG_N: XPG N-terminal 24.2 43 0.00094 22.5 1.2 16 55-70 74-89 (101)
150 cd01447 Polysulfide_ST Polysul 24.2 1.2E+02 0.0027 19.5 3.4 25 52-76 59-83 (103)
151 PF13848 Thioredoxin_6: Thiore 24.0 2.7E+02 0.0058 19.7 6.2 58 57-114 99-159 (184)
152 PF01586 Basic: Myogenic Basic 24.0 26 0.00056 24.5 0.0 31 45-79 5-36 (86)
153 PRK00522 tpx lipid hydroperoxi 23.9 1.9E+02 0.0042 21.2 4.7 34 55-88 47-82 (167)
154 cd03018 PRX_AhpE_like Peroxire 23.8 2.5E+02 0.0055 19.3 5.8 33 57-89 33-69 (149)
155 COG3118 Thioredoxin domain-con 23.7 2.3E+02 0.0049 24.2 5.5 80 42-123 25-114 (304)
156 PF00462 Glutaredoxin: Glutare 23.4 1.7E+02 0.0038 17.3 4.8 41 58-100 3-44 (60)
157 TIGR00014 arsC arsenate reduct 23.2 1.9E+02 0.0041 20.2 4.4 46 57-104 2-52 (114)
158 cd01444 GlpE_ST GlpE sulfurtra 22.4 1.5E+02 0.0032 18.9 3.4 27 52-78 54-80 (96)
159 PTZ00102 disulphide isomerase; 22.3 3.2E+02 0.007 22.9 6.3 59 56-116 379-441 (477)
160 KOG1493 Anaphase-promoting com 22.0 36 0.00077 23.8 0.4 13 56-68 26-38 (84)
161 PRK13344 spxA transcriptional 21.9 2.1E+02 0.0045 20.8 4.5 45 56-102 2-51 (132)
162 cd01528 RHOD_2 Member of the R 21.8 1.4E+02 0.0031 19.5 3.4 25 53-77 57-81 (101)
163 cd03061 GST_N_CLIC GST_N famil 21.3 1.1E+02 0.0024 21.0 2.8 25 62-88 20-44 (91)
164 cd00128 XPG Xeroderma pigmento 21.3 45 0.00098 27.3 0.9 29 39-68 56-84 (316)
165 PRK15317 alkyl hydroperoxide r 20.8 1.7E+02 0.0038 25.4 4.5 50 54-103 118-168 (517)
166 cd02986 DLP Dim1 family, Dim1- 20.8 3.4E+02 0.0073 19.7 5.6 60 57-118 19-80 (114)
167 smart00485 XPGN Xeroderma pigm 20.3 54 0.0012 22.1 1.0 25 39-63 56-80 (99)
168 COG0526 TrxA Thiol-disulfide i 20.3 1.8E+02 0.0039 17.5 3.4 42 60-101 40-84 (127)
169 PRK09437 bcp thioredoxin-depen 20.2 2.9E+02 0.0064 19.4 4.9 21 55-75 32-54 (154)
170 KOG0191 Thioredoxin/protein di 20.2 2E+02 0.0044 24.0 4.6 60 55-116 50-111 (383)
171 COG1712 Predicted dinucleotide 20.1 63 0.0014 26.8 1.5 50 3-63 115-165 (255)
172 PHA02540 61 DNA primase; Provi 20.0 75 0.0016 27.2 2.0 55 54-109 257-315 (337)
No 1
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=99.79 E-value=2.3e-19 Score=134.36 Aligned_cols=74 Identities=43% Similarity=0.805 Sum_probs=69.0
Q ss_pred CCCccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch---hhhhhhh
Q 033158 52 PDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY---ADIIFSV 125 (126)
Q Consensus 52 ~~~~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~---~~Af~ai 125 (126)
+....+|+|||+|+||+++|+|++++|+.++++|+++||+.|+++++.+|+++++.++++++++|+. ++|+++|
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i 82 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRI 82 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHH
Confidence 5567899999999999999999999999999999999999999999999999999999999999986 7777765
No 2
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=99.66 E-value=1e-16 Score=112.53 Aligned_cols=68 Identities=32% Similarity=0.694 Sum_probs=60.7
Q ss_pred EEEeCCCcchHHHHHHHHHhCCCCcEEEEeccchhHHHHHHhcCCCccCCcEEEE-EECCc-h---hhhhhhh
Q 033158 58 MLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVL-VEKDR-Y---ADIIFSV 125 (126)
Q Consensus 58 V~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvll-v~~Gr-~---~~Af~ai 125 (126)
|+|||+||||+++|++++++|+.++++|+++|++.++++++.+|++.+++++.++ +++|+ + ++|+..+
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l 73 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRL 73 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHH
Confidence 6999999999999999999999999999999999999989999999999997665 46776 5 7777664
No 3
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=94.06 E-value=0.28 Score=32.52 Aligned_cols=61 Identities=8% Similarity=0.171 Sum_probs=48.7
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC--CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEEC
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEK 115 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~ 115 (126)
-.++|++.+|+-|......+.+..+ ++++.|+.+..+....+.+.+|+..+.+=+++++..
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEec
Confidence 3466788899999999998876553 478999999998888899999997666567777664
No 4
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=92.64 E-value=1.1 Score=29.19 Aligned_cols=61 Identities=15% Similarity=0.270 Sum_probs=42.1
Q ss_pred ccEEEEeCCCcchHHHHHHH----HHhCCCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCc
Q 033158 55 RPIMLYDGVCNLCNGGVKFV----RDNDKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl----~r~Dr~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr 117 (126)
-.+.||+..|+.|......+ ...+..+++.|+.+.......+.+.+|+. ..-+++++++|.
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~--~~P~~~~~~~~~ 80 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVS--GFPTIKFFPKGK 80 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCC--cCCEEEEecCCC
Confidence 46889999999998754444 33333337999988777666777888863 344776666544
No 5
>PTZ00051 thioredoxin; Provisional
Probab=91.92 E-value=0.6 Score=30.74 Aligned_cols=62 Identities=8% Similarity=0.244 Sum_probs=45.2
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCC-CcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKN-RRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~-~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
-.+.||...|+-|......+.+.... ..+.|..+.......+.+.+++. .+=++++..+|+.
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENIT--SMPTFKVFKNGSV 83 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCc--eeeEEEEEeCCeE
Confidence 35789999999999998877665443 45888888777666788888873 3335666677764
No 6
>PF13728 TraF: F plasmid transfer operon protein
Probab=91.38 E-value=0.52 Score=37.22 Aligned_cols=58 Identities=14% Similarity=0.249 Sum_probs=37.6
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCCCc--EEEEeccch---------hHHHHHHhcCCCccCCcEEEEEE
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKNRR--IRYEALQSE---------SGKKLLRRSGRAPDDISSVVLVE 114 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~~~--~~F~~lQS~---------~g~~lL~~~Gl~~e~~dsvllv~ 114 (126)
..++||+|.|++|+...--|+..-.+-. +..+++.+. .-..+.+++|+. ..=+++++.
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~--~~Pal~Lv~ 191 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVK--VTPALFLVN 191 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCC--cCCEEEEEE
Confidence 6899999999999999888877765544 455555431 012245677763 223555555
No 7
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=90.73 E-value=1.4 Score=29.45 Aligned_cols=61 Identities=7% Similarity=0.195 Sum_probs=40.8
Q ss_pred cEEEEeCCCcchHHHHHHHHHhC--CCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDND--KNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~D--r~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
.++|+...|+.|......+.+.- ..+++.|..+.-+.-.++..++|+ ..+-+++++.+|+.
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v--~~vPt~~i~~~g~~ 79 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI--MGTPTVQFFKDKEL 79 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC--eeccEEEEEECCeE
Confidence 46688899999999988885522 234677777765444456778776 23346666676764
No 8
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=90.68 E-value=1.4 Score=33.79 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=45.3
Q ss_pred CCCccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccchhHHHHHHhcCCCccCC--cEEE----EEECCch-hhhhhh
Q 033158 52 PDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRAPDDI--SSVV----LVEKDRY-ADIIFS 124 (126)
Q Consensus 52 ~~~~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS~~g~~lL~~~Gl~~e~~--dsvl----lv~~Gr~-~~Af~a 124 (126)
+..+.++++|-.|+=|+.|.+.+...+ |..-.........+-+++|+..+-- .+.+ ++ +|.+ .+||..
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~G----f~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~v-EGHVPa~aI~~ 98 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANG----FEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYV-EGHVPAEAIAR 98 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCC----cEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEE-eccCCHHHHHH
Confidence 456899999999999999999998654 3333333334445667799976643 3443 23 4544 777764
No 9
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=90.40 E-value=0.86 Score=29.62 Aligned_cols=62 Identities=11% Similarity=0.380 Sum_probs=47.2
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC--CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
-.+.||--.|+-|......+.+... .+.+.|..+.......+.+++++ ..+=+++++.+|+.
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v--~~~Pt~~~~~~g~~ 83 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGV--KSVPTIIFFKNGKE 83 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTC--SSSSEEEEEETTEE
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCC--CCCCEEEEEECCcE
Confidence 4677999999999999877754443 23799999988877888999886 34457877777664
No 10
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=89.15 E-value=1.3 Score=27.41 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=33.8
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC-CCcEEEEeccchhHHHHHHhcCC
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK-NRRIRYEALQSESGKKLLRRSGR 102 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr-~~~~~F~~lQS~~g~~lL~~~Gl 102 (126)
+.++|+--.|+.|.....++.+... ...+.|.-+.-..-+++.+.+|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i 50 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGV 50 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCC
Confidence 3578889999999999999977633 23576766654444456777776
No 11
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=89.03 E-value=3.1 Score=26.28 Aligned_cols=60 Identities=10% Similarity=0.182 Sum_probs=42.3
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhC----CCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECC
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDND----KNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKD 116 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~D----r~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~G 116 (126)
-.+.||...|+.|......+.+.. .+..+.|..+.-....++.+++|+. ..=+++++++|
T Consensus 18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~--~~Pt~~~~~~~ 81 (101)
T cd02961 18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVR--GYPTIKLFPNG 81 (101)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCC--CCCEEEEEcCC
Confidence 357788888999999887765432 2467999998766555678888873 33467666654
No 12
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=88.41 E-value=3.4 Score=25.63 Aligned_cols=42 Identities=7% Similarity=0.139 Sum_probs=30.4
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEecc-chhHHHHHHh
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQ-SESGKKLLRR 99 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQ-S~~g~~lL~~ 99 (126)
.+||+-..|+.|.....++.++.- .+.+.++. .+...+.+..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~--~~~~idi~~~~~~~~~~~~ 44 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA--AYEWVDIEEDEGAADRVVS 44 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC--ceEEEeCcCCHhHHHHHHH
Confidence 578999999999999999988754 57777774 3333333333
No 13
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=88.21 E-value=0.61 Score=37.49 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=26.3
Q ss_pred CCccEEEEeCCCcchHHHHHHHHHhCCCC--cEEEEec
Q 033158 53 DSRPIMLYDGVCNLCNGGVKFVRDNDKNR--RIRYEAL 88 (126)
Q Consensus 53 ~~~~iV~FDG~C~LC~~~V~fl~r~Dr~~--~~~F~~l 88 (126)
+...++|.|=.||+|++.-.-+...-..+ ++++.++
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 34578999999999999988877654445 3455553
No 14
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=88.20 E-value=1.9 Score=28.77 Aligned_cols=59 Identities=10% Similarity=0.263 Sum_probs=41.8
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC--CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECC
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKD 116 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~G 116 (126)
.+.||-..|+.|......+.+.-. .+.+.|+.+.-..-.++.+++|+. ..=+++++.+|
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~--~~Pt~~~~~~g 83 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIR--AYPTIRLYPGN 83 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCC--cccEEEEEcCC
Confidence 567899999999988777754433 356888888776666777788763 33467666654
No 15
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=87.85 E-value=3 Score=26.81 Aligned_cols=62 Identities=10% Similarity=0.276 Sum_probs=42.2
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhC--CCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDND--KNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~D--r~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
-.+.||-..|+.|......+.+.- ..+++.|..+....-..+.+.+|+. ..=+++++.+|+.
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~P~~~~~~~g~~ 80 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIR--SIPTLLLFKNGKE 80 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCC--cCCEEEEEeCCcE
Confidence 457788999999998887775543 3356888888655555677888764 3346666666653
No 16
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=87.42 E-value=2.4 Score=26.12 Aligned_cols=60 Identities=8% Similarity=0.311 Sum_probs=41.1
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC-CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK-NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr-~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr 117 (126)
.++|+-..|+.|......+.+.-. .+.+.|..+.-....++...+|+. ..=++++..+|+
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~--~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVR--SIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcc--cccEEEEEECCE
Confidence 577888999999998888866443 367888777555445567777763 233566656665
No 17
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=87.34 E-value=2.3 Score=28.32 Aligned_cols=60 Identities=20% Similarity=0.302 Sum_probs=41.8
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC--CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr 117 (126)
.+.||-..|+-|......+.+.-. ++.+.|..+.-..-..+.+++++ ...=++++..+|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGV--NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCC--CccCEEEEEcCCC
Confidence 577999999999988777654433 35688887766555567778776 3444676666665
No 18
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=86.66 E-value=0.89 Score=36.13 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=26.8
Q ss_pred CCCccEEEEeCCCcchHHHHHHHHHhCCCC-cEEEE
Q 033158 52 PDSRPIMLYDGVCNLCNGGVKFVRDNDKNR-RIRYE 86 (126)
Q Consensus 52 ~~~~~iV~FDG~C~LC~~~V~fl~r~Dr~~-~~~F~ 86 (126)
.+...++|.|=+||+|.+.-..+.+.+..+ +++|.
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 344688999999999999999998876533 44443
No 19
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=86.59 E-value=2 Score=27.13 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=34.6
Q ss_pred cEEEEeCCCcchHHHHHHHHHhC--CCCcEEEEeccchhHHHHHHhcCCC
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDND--KNRRIRYEALQSESGKKLLRRSGRA 103 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~D--r~~~~~F~~lQS~~g~~lL~~~Gl~ 103 (126)
.++|+--.|+.|......+.+.- .+..+.+..+.-+...++.+.+|+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~ 52 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIM 52 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCc
Confidence 57899999999999999987642 2345777776554555667777764
No 20
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=86.53 E-value=0.55 Score=38.34 Aligned_cols=37 Identities=8% Similarity=0.114 Sum_probs=28.7
Q ss_pred CccEEEEeCCCcchHHHHHHHHHhCCCCcEEE--Eeccc
Q 033158 54 SRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRY--EALQS 90 (126)
Q Consensus 54 ~~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F--~~lQS 90 (126)
-..++||+|+|++|+..+--|+..-.+..+.. +++.+
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG 183 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDG 183 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 36899999999999999999988776555544 45443
No 21
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=86.46 E-value=1.9 Score=27.71 Aligned_cols=38 Identities=8% Similarity=0.214 Sum_probs=25.8
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCC---CcEEEEeccchh
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKN---RRIRYEALQSES 92 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~---~~~~F~~lQS~~ 92 (126)
-.+.||...|+.|.....-+.+.-.+ ..+.++.+....
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~ 62 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD 62 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC
Confidence 45778888999999887666554332 467777764433
No 22
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=85.62 E-value=1.3 Score=33.49 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=26.1
Q ss_pred CCCccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEe
Q 033158 52 PDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEA 87 (126)
Q Consensus 52 ~~~~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~ 87 (126)
.+...++|+|=.|++|...-..+.+....-++++..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~ 112 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFP 112 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEE
Confidence 345789999999999999999988633333444443
No 23
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=85.40 E-value=3.6 Score=26.75 Aligned_cols=61 Identities=7% Similarity=0.141 Sum_probs=43.7
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC--CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
.+.||-..|+-|......+.+... ...+.|..+....-.++.+++++. .+=+++++.+|+.
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~Pt~~~~~~g~~ 80 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEIT--AVPTFVFFRNGTI 80 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCc--cccEEEEEECCEE
Confidence 477899999999988887765443 357888888766555677888863 3447777677664
No 24
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=84.91 E-value=3.9 Score=28.60 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=45.7
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC-CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK-NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr-~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
.+.||--.|+-|......+.+..+ ...+.|..+....-.++.+++++. .+=++++..+|+.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~--~vPt~l~fk~G~~ 87 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIK--VLPTVILFKNGKT 87 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCc--cCCEEEEEECCEE
Confidence 577889999999988888766543 245888888777777778888763 4457888877764
No 25
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=84.41 E-value=3.4 Score=27.02 Aligned_cols=59 Identities=10% Similarity=0.219 Sum_probs=40.4
Q ss_pred cEEEEeCCCcchHHHHHHHHHhC--CCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECC
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDND--KNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKD 116 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~D--r~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~G 116 (126)
.+.||-..|+.|......+.+.. -.+.+.|..+..+...++.+++|+. ..=+++++.+|
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~--~~P~~~~~~~~ 82 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVR--GFPTIKVFGAG 82 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCC--ccCEEEEECCC
Confidence 56788888999999876554432 2356888888766666778888873 33466666655
No 26
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=84.14 E-value=0.87 Score=37.34 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=28.0
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCCC--cEEEEeccch
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKNR--RIRYEALQSE 91 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~~--~~~F~~lQS~ 91 (126)
..++||.|+|++|+..+--|+..-.+- .+..+++.+.
T Consensus 153 gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~ 191 (256)
T TIGR02739 153 GLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGT 191 (256)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 689999999999999999886665544 3455555544
No 27
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=84.05 E-value=2.9 Score=27.33 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=38.1
Q ss_pred cEEEEeCCCcchHHHHHHHHHh----CCCCcEEEEeccchh--HHHHHHhcCCCccCCcEEEEEECCc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDN----DKNRRIRYEALQSES--GKKLLRRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~----Dr~~~~~F~~lQS~~--g~~lL~~~Gl~~e~~dsvllv~~Gr 117 (126)
.+.||-..|+.|......+.+. ...+.+.|+.+.-.. ...+.+++|+. ..=++++..+|+
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~Pt~~~~~~g~ 86 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVK--GFPTFKYFENGK 86 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCc--cccEEEEEeCCC
Confidence 5789999999999886555332 223567776654333 55667787762 233566666665
No 28
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=83.67 E-value=6.3 Score=27.48 Aligned_cols=59 Identities=8% Similarity=0.327 Sum_probs=39.0
Q ss_pred ccEEEEe-CCCcchHHHHHHHHHhCC-CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEEC
Q 033158 55 RPIMLYD-GVCNLCNGGVKFVRDNDK-NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEK 115 (126)
Q Consensus 55 ~~iV~FD-G~C~LC~~~V~fl~r~Dr-~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~ 115 (126)
..+|+|. -.|+.|.....++.+... .+.+.|.-+.-+...++.+.+|+. .+=++++.++
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~--~vPt~~i~~~ 84 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVE--RVPTTIFLQD 84 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCC--cCCEEEEEeC
Confidence 4556656 499999988888865543 245667666555566788888863 3346666554
No 29
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=83.40 E-value=7.9 Score=25.20 Aligned_cols=61 Identities=5% Similarity=0.097 Sum_probs=43.2
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC--CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
.+.||-..|+-|......+.+... .+.+.|..+.-....++.+++++. .+=+++++++|+.
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQ--ALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCC--CCCEEEEEeCCEE
Confidence 577899999999998877754432 346888888766666788888863 3346666667764
No 30
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=82.97 E-value=5.8 Score=21.68 Aligned_cols=36 Identities=11% Similarity=0.372 Sum_probs=25.2
Q ss_pred EEEEeCCCcchHHHHHHHHHh---CCCCcEEEEeccchh
Q 033158 57 IMLYDGVCNLCNGGVKFVRDN---DKNRRIRYEALQSES 92 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~---Dr~~~~~F~~lQS~~ 92 (126)
++++...|+.|......+.+. ..+-.+...+.....
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP 40 (69)
T ss_pred EEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh
Confidence 688999999999999998864 333344444544433
No 31
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=82.89 E-value=5.3 Score=26.00 Aligned_cols=59 Identities=7% Similarity=0.211 Sum_probs=38.5
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC----CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK----NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr----~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr 117 (126)
.+.||...|+.|.....-+.+... ..++.|..+....- ++...+++ ...=++++..+|.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~--~~~Pt~~~~~~~~ 84 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV--DGFPTILFFPAGD 84 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC--CCCCEEEEEcCCC
Confidence 467999999999998777755543 24688888765442 34555554 3334666665544
No 32
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=82.56 E-value=2.4 Score=26.70 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=19.7
Q ss_pred cEEEEeCCCcchHHHHHHHHHh
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDN 77 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~ 77 (126)
.++|||=.||.|...-..+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3689999999999999999886
No 33
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=82.29 E-value=5.5 Score=26.44 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=38.3
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhC--CCCcEEEEeccchh--HHHHHHhcCCCccCCcEEEEEECC
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDND--KNRRIRYEALQSES--GKKLLRRSGRAPDDISSVVLVEKD 116 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~D--r~~~~~F~~lQS~~--g~~lL~~~Gl~~e~~dsvllv~~G 116 (126)
-.+.||-..|+.|.....-+.+.. .++.+.|+.+.... ..++...+++. ..=+++++++|
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~--~~Pt~~~~~~~ 84 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQ--GFPTLKVFRPP 84 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCC--cCCEEEEEeCC
Confidence 467899999999998766554432 23456666554333 45677777753 34467766654
No 34
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=82.23 E-value=3.2 Score=28.17 Aligned_cols=52 Identities=12% Similarity=0.003 Sum_probs=37.9
Q ss_pred CCCccEEEEeCCCcchHHHHHHHHHhCCC-CcEEEEeccchhHHHHHHhcCCC
Q 033158 52 PDSRPIMLYDGVCNLCNGGVKFVRDNDKN-RRIRYEALQSESGKKLLRRSGRA 103 (126)
Q Consensus 52 ~~~~~iV~FDG~C~LC~~~V~fl~r~Dr~-~~~~F~~lQS~~g~~lL~~~Gl~ 103 (126)
.+-+..+|++..|+.|...++.+.+.-.. .++.|.-+.-....++.+.||+.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~ 64 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIM 64 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCc
Confidence 33367899999999999999988776543 35777766655555677888864
No 35
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=81.71 E-value=5.4 Score=26.89 Aligned_cols=60 Identities=7% Similarity=0.165 Sum_probs=41.1
Q ss_pred cEEEEeCCCcchHHHHHHHHHhC-------C-CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDND-------K-NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~D-------r-~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr 117 (126)
.+.||-..|+.|......+.+.- . .+++.|..+....-..+.+++|+. ..=++++..+|+
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~--~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRIN--KYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCC--cCCEEEEEeCCc
Confidence 47788999999999887775332 1 246888887554445678888873 334666666665
No 36
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=81.67 E-value=3.7 Score=25.99 Aligned_cols=34 Identities=9% Similarity=0.273 Sum_probs=28.4
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccc
Q 033158 57 IMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQS 90 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS 90 (126)
++|+--.|+.|....+++.++.-...+.+..++.
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~ 35 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQ 35 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeC
Confidence 6788889999999999999988555588888854
No 37
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=81.33 E-value=7.9 Score=26.59 Aligned_cols=60 Identities=7% Similarity=0.124 Sum_probs=42.5
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC-CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK-NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr-~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
.+.||...|+-|......+.+... ...+.|+.+....- ++.+.+++. .+=++++..+|+.
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~--~~Pt~~~f~~G~~ 88 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIK--VLPTLLVYKNGEL 88 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCC--cCCEEEEEECCEE
Confidence 466999999999988777765443 24578888877654 566777763 3347777777775
No 38
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=80.73 E-value=2.3 Score=29.58 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=24.8
Q ss_pred CccEEEEeCCCcchHHHHHHHHHhC---CCCcEEEEec
Q 033158 54 SRPIMLYDGVCNLCNGGVKFVRDND---KNRRIRYEAL 88 (126)
Q Consensus 54 ~~~iV~FDG~C~LC~~~V~fl~r~D---r~~~~~F~~l 88 (126)
...++|+|=.||.|...-..+.+.- .+-++.|.++
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 3678999999999999888776632 2224555554
No 39
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=79.32 E-value=5.8 Score=25.75 Aligned_cols=60 Identities=12% Similarity=0.248 Sum_probs=39.1
Q ss_pred ccEEEEeCCCcchHHHHHHHHH----hCCCCcEEEEeccchh-HHHHHHhcCCCccCCcEEEEEECC
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRD----NDKNRRIRYEALQSES-GKKLLRRSGRAPDDISSVVLVEKD 116 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r----~Dr~~~~~F~~lQS~~-g~~lL~~~Gl~~e~~dsvllv~~G 116 (126)
-.+.||...|+.|......+.. ....+.+.|..+.... ...+.+.+++. ..=+++++.+|
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~--~~P~~~~~~~~ 85 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVS--GFPTLKFFPKG 85 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCC--CcCEEEEEeCC
Confidence 3578999999999876555533 2223568888886555 45577777763 33466665533
No 40
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=77.94 E-value=1.8 Score=29.07 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=16.6
Q ss_pred CccEEEEeCCCcchHHHHHHHHH
Q 033158 54 SRPIMLYDGVCNLCNGGVKFVRD 76 (126)
Q Consensus 54 ~~~iV~FDG~C~LC~~~V~fl~r 76 (126)
...++|+|=+|+.|...-..+..
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHHH
Confidence 35678889999999987777764
No 41
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=77.48 E-value=7.8 Score=25.90 Aligned_cols=49 Identities=10% Similarity=0.318 Sum_probs=32.1
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC--CCcEEEEec---cchhHHHHHHhcCCC
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEAL---QSESGKKLLRRSGRA 103 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~l---QS~~g~~lL~~~Gl~ 103 (126)
-.+.||-..|+.|......+.+... .+.+.+..+ ..+..++.++.+++.
T Consensus 24 vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~ 77 (114)
T cd02967 24 TLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLE 77 (114)
T ss_pred EEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCC
Confidence 3567888899999999888866432 244555555 334555566676653
No 42
>PRK09381 trxA thioredoxin; Provisional
Probab=77.38 E-value=12 Score=25.11 Aligned_cols=61 Identities=10% Similarity=0.208 Sum_probs=38.9
Q ss_pred cEEEEeCCCcchHHHHHHHHHhC--CCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDND--KNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~D--r~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
.+.||-..|+-|......+.+.- ..+.+.|..+.......+..++++. ..=+++++.+|+.
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~G~~ 87 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIR--GIPTLLLFKNGEV 87 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCC--cCCEEEEEeCCeE
Confidence 46688889999999987774422 2345666666554444566777752 3336666666664
No 43
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=76.62 E-value=13 Score=22.29 Aligned_cols=45 Identities=9% Similarity=0.248 Sum_probs=30.6
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccch--hHHHHHHhcCC
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSE--SGKKLLRRSGR 102 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS~--~g~~lL~~~Gl 102 (126)
.++|+--.|+.|.....++...+ -.+...+++.. ..+++++.+|.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~--i~~~~vdi~~~~~~~~~~~~~~~~ 48 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKG--IAFEEIDVEKDSAAREEVLKVLGQ 48 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCC--CeEEEEeccCCHHHHHHHHHHhCC
Confidence 56788889999999988887643 35667777542 23445555653
No 44
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=76.34 E-value=12 Score=26.57 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=41.6
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCC--CcEEEEeccch---------hHHHHHHhcCCCcc--CCcEEEEEECCch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKN--RRIRYEALQSE---------SGKKLLRRSGRAPD--DISSVVLVEKDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~--~~~~F~~lQS~---------~g~~lL~~~Gl~~e--~~dsvllv~~Gr~ 118 (126)
.+.|+=..||.|....-.+.+.-.+ ..+.++++... ..+++.+.+++... -+=+++++.+|+.
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~ 102 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ 102 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeE
Confidence 5668889999999988887655433 45888888632 33455566665321 1237788777764
No 45
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=75.78 E-value=8.2 Score=31.44 Aligned_cols=61 Identities=8% Similarity=0.208 Sum_probs=38.2
Q ss_pred CCCccEEEEeCCCcchHHHHHHHHHhCCCC--cEEEEeccchh---------HHHHHHhcCCCccCCcEEEEEE
Q 033158 52 PDSRPIMLYDGVCNLCNGGVKFVRDNDKNR--RIRYEALQSES---------GKKLLRRSGRAPDDISSVVLVE 114 (126)
Q Consensus 52 ~~~~~iV~FDG~C~LC~~~V~fl~r~Dr~~--~~~F~~lQS~~---------g~~lL~~~Gl~~e~~dsvllv~ 114 (126)
+....+.||-+.|+.|....-.+.+.-.+. .+.++++.+.. -..+.+++|+ ..+=++++++
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV--~~vPtl~Lv~ 237 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI--RTVPAVFLAD 237 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCC--CcCCeEEEEE
Confidence 344578899999999999988886665433 35556665421 0124567776 2333666665
No 46
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=75.76 E-value=12 Score=28.72 Aligned_cols=61 Identities=10% Similarity=0.332 Sum_probs=42.4
Q ss_pred ccEEEEe---CCCcchHHHHHHHHHhCCC-C--cEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCc
Q 033158 55 RPIMLYD---GVCNLCNGGVKFVRDNDKN-R--RIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 55 ~~iV~FD---G~C~LC~~~V~fl~r~Dr~-~--~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr 117 (126)
..++|++ -+|+-|......+.+.... + .+.+..+..+...++.+++|+. .+-+++++.+|+
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~--~~Pt~~~f~~g~ 88 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVE--RVPTTIILEEGK 88 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCC--ccCEEEEEeCCe
Confidence 3445556 5899999998888666322 2 3678888877777788888863 345777766654
No 47
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=75.74 E-value=4.6 Score=28.42 Aligned_cols=52 Identities=10% Similarity=0.390 Sum_probs=30.7
Q ss_pred CCCCCccEEEEeC-CCcchHHHHHHHHHhCC---CCcEEEEec--c-chhHHHHHHhcC
Q 033158 50 FEPDSRPIMLYDG-VCNLCNGGVKFVRDNDK---NRRIRYEAL--Q-SESGKKLLRRSG 101 (126)
Q Consensus 50 ~~~~~~~iV~FDG-~C~LC~~~V~fl~r~Dr---~~~~~F~~l--Q-S~~g~~lL~~~G 101 (126)
|.+..-.+.||-+ .|+.|..++-++.+... .+.+.++.+ . ++..++.+++++
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~ 84 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYG 84 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTT
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhC
Confidence 4234446778888 99999999987766632 233444444 2 233444444433
No 48
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=74.70 E-value=14 Score=21.85 Aligned_cols=34 Identities=6% Similarity=0.265 Sum_probs=26.8
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSE 91 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS~ 91 (126)
.+++.-..|+.|.....++.++. -.+...++...
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--i~~~~~di~~~ 35 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--IEFEEIDILED 35 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--CcEEEEECCCC
Confidence 45677788999999999999886 46777777553
No 49
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=74.30 E-value=15 Score=25.22 Aligned_cols=43 Identities=16% Similarity=0.438 Sum_probs=29.8
Q ss_pred ccEEEEe-C-----CCcchHHHHHHHHHhCCCCcEEEEec-cchhHHHHHHh
Q 033158 55 RPIMLYD-G-----VCNLCNGGVKFVRDNDKNRRIRYEAL-QSESGKKLLRR 99 (126)
Q Consensus 55 ~~iV~FD-G-----~C~LC~~~V~fl~r~Dr~~~~~F~~l-QS~~g~~lL~~ 99 (126)
.++++|= | .||+|.+..+++..+.- .+...++ +.+..++.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i--~~~~~di~~~~~~~~~l~~ 61 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGV--PFAYVNVLEDPEIRQGIKE 61 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCC--CEEEEECCCCHHHHHHHHH
Confidence 4677775 3 59999999999988754 5677777 34444444443
No 50
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=74.21 E-value=13 Score=28.63 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=41.7
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCC-CcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCc
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKN-RRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~-~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr 117 (126)
..++|+...|+.|......+.+.... +.+.+.-+.-....++.+++|+. .+=++++..+|.
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~--~vPtl~i~~~~~ 197 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVM--SVPKIVINKGVE 197 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCc--cCCEEEEecCCE
Confidence 45668899999999988888766543 46777666555566677888763 334666655553
No 51
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=73.58 E-value=9.7 Score=30.51 Aligned_cols=67 Identities=13% Similarity=0.272 Sum_probs=49.5
Q ss_pred CCCccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEec--cchhHHHHHHhcCCCccCCc--EEEE-EECCch
Q 033158 52 PDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEAL--QSESGKKLLRRSGRAPDDIS--SVVL-VEKDRY 118 (126)
Q Consensus 52 ~~~~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~l--QS~~g~~lL~~~Gl~~e~~d--svll-v~~Gr~ 118 (126)
..++..+|-+-+|+-|..-+..+..-++.=.|.++.- ....-+.-...++|+++.+. .|-+ .++|++
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w 179 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRW 179 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchH
Confidence 4567888898999999999999988777778888884 33333444578899999886 3433 345554
No 52
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=73.23 E-value=4.2 Score=30.45 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=36.2
Q ss_pred ceeeeeeeCCCCCCcccceeecccCCCCCCCccEEEEeCCCcchHHHHHHHHHhCCCCcE--EEEeccc
Q 033158 24 RTAVVATLSPPKRDKVDYWVDATSSFFEPDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRI--RYEALQS 90 (126)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~--~F~~lQS 90 (126)
...+.+|...|....+. . .+.+.+.||-..|+.|..++-.+.+.-++..+ ..+.+..
T Consensus 32 ~~~~~~~~~~~~G~~~~---------l-~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 32 QGLTAATDNAPQGRHAN---------Q-DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred ccccccccccCcchhhh---------c-CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 34445555555544443 1 23358899999999999999988776544334 4444443
No 53
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=72.95 E-value=7.7 Score=27.90 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=21.4
Q ss_pred CCCccEEEEeCCCcchHHHHHHHHHh
Q 033158 52 PDSRPIMLYDGVCNLCNGGVKFVRDN 77 (126)
Q Consensus 52 ~~~~~iV~FDG~C~LC~~~V~fl~r~ 77 (126)
.+...+.|||=.||.|...-..+.+.
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHH
Confidence 45578999999999999988887543
No 54
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=72.83 E-value=13 Score=27.92 Aligned_cols=63 Identities=3% Similarity=0.125 Sum_probs=44.3
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCC---CcEEEEeccchhHHHHHHhcCCCc----cCCcEEEEEECCch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKN---RRIRYEALQSESGKKLLRRSGRAP----DDISSVVLVEKDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~---~~~~F~~lQS~~g~~lL~~~Gl~~----e~~dsvllv~~Gr~ 118 (126)
.+.||=..|+-|......+.+...+ .+++|..+.-..-.++.+++++.. ...=++++..+|+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKE 120 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEE
Confidence 5678888999999988877555432 358888887666667788888754 22346776666664
No 55
>PRK10996 thioredoxin 2; Provisional
Probab=72.66 E-value=22 Score=25.56 Aligned_cols=62 Identities=15% Similarity=0.335 Sum_probs=42.6
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhC--CCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDND--KNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~D--r~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
-.+.||-..|+.|......+.+.- ..+.+.|..+....-.++.+++|+. .+=++++.++|+.
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~--~~Ptlii~~~G~~ 118 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIR--SIPTIMIFKNGQV 118 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCC--ccCEEEEEECCEE
Confidence 357788999999998876664432 2356888777665556678888863 3346666677774
No 56
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=72.12 E-value=14 Score=24.99 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=23.7
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEe
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEA 87 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~ 87 (126)
..+.||-..|+.|......+.+.-.+-.+..+.
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~ 55 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQLAADYPVVSVA 55 (123)
T ss_pred EEEEEECCcChhhhhhChHHHHHHhhCCEEEEE
Confidence 467789899999999988887665443443333
No 57
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=72.02 E-value=8.1 Score=24.39 Aligned_cols=33 Identities=9% Similarity=0.302 Sum_probs=25.8
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQS 90 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS 90 (126)
.+++.--.||.|....+++.++.- .+.+..++.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~--~~~~~~v~~ 34 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV--KPAVVELDQ 34 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 456667799999999999999876 566666644
No 58
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=72.02 E-value=8.2 Score=26.78 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=24.2
Q ss_pred EEEE-eCCCcchHHHHHHHHHhCC---CCcEEEEeccch
Q 033158 57 IMLY-DGVCNLCNGGVKFVRDNDK---NRRIRYEALQSE 91 (126)
Q Consensus 57 iV~F-DG~C~LC~~~V~fl~r~Dr---~~~~~F~~lQS~ 91 (126)
+++| --.|+.|..++.-+.+.-. ...+.++.+...
T Consensus 28 l~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~ 66 (149)
T cd02970 28 VVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE 66 (149)
T ss_pred EEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC
Confidence 4444 6799999999988876543 245777777443
No 59
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=71.54 E-value=21 Score=25.67 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=46.9
Q ss_pred CCCccEEEEeCC---CcchHHHHHHHHHhCC--CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 52 PDSRPIMLYDGV---CNLCNGGVKFVRDNDK--NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 52 ~~~~~iV~FDG~---C~LC~~~V~fl~r~Dr--~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
.++..+|+|=+. ||=|....-.+.+... .+++.|+-+.-+.-.++..++|+ ..+=++++..+|+.
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V--~sIPTli~fkdGk~ 95 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGV--LRTPALLFFRDGRY 95 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCC--CcCCEEEEEECCEE
Confidence 345668888777 9999998888855544 36688877766555678888886 34448888888775
No 60
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.31 E-value=8.7 Score=26.80 Aligned_cols=37 Identities=11% Similarity=0.377 Sum_probs=31.8
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccchhH
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESG 93 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS~~g 93 (126)
++++|+--.||=|...+..+.+..- ++.|+.+.+..+
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v--~yd~VeIt~Sm~ 39 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNV--DYDFVEITESMA 39 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCC--Cceeeehhhhhh
Confidence 6799999999999999999999865 788999876553
No 61
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=70.50 E-value=13 Score=23.52 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=26.7
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccc
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQS 90 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS 90 (126)
+.+|+.=-.|+.|....+++.+++- .+...+++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi--~~~~~di~~ 35 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGL--PYVEINIDI 35 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCC--ceEEEECCC
Confidence 4566666779999999999998764 577778854
No 62
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=69.97 E-value=9.1 Score=31.45 Aligned_cols=51 Identities=14% Similarity=0.350 Sum_probs=40.2
Q ss_pred ceeecccCCCCCCCccEEEEeCC--CcchHHHHHHH--HHhCCCCcEEEEeccchh
Q 033158 41 YWVDATSSFFEPDSRPIMLYDGV--CNLCNGGVKFV--RDNDKNRRIRYEALQSES 92 (126)
Q Consensus 41 ~~~~~~~~~~~~~~~~iV~FDG~--C~LC~~~V~fl--~r~Dr~~~~~F~~lQS~~ 92 (126)
+|+|-.+.-+-..+|+.|+|.|. ||+|... +|. ..+.|-|.+.+....|..
T Consensus 45 ~~~kvsn~d~~~~Gk~~v~~igw~gCP~~A~~-sW~L~~ALsrfGn~~l~~~~S~~ 99 (249)
T PF06053_consen 45 NFFKVSNQDLAPNGKPEVIFIGWEGCPYCAAE-SWALYIALSRFGNFSLEYHYSDP 99 (249)
T ss_pred ceeeecCcccCCCCeeEEEEEecccCccchhh-HHHHHHHHHhcCCeeeEEeecCc
Confidence 59998888776788999999995 9999876 343 566788888777777644
No 63
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=69.75 E-value=17 Score=23.61 Aligned_cols=61 Identities=8% Similarity=0.191 Sum_probs=37.9
Q ss_pred ccEEEEeCCCcchHHHHHHHHHh----CC-CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCc
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDN----DK-NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~----Dr-~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr 117 (126)
-.+.||-..|+-|.....-+.+. .. ...+.|..+.-..-..+.+.+++ ..+=+++++.+|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV--RGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC--CcCCEEEEEeCCC
Confidence 45788999999999876655333 11 23677777755433356667765 3334666666554
No 64
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=68.63 E-value=28 Score=25.25 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=39.1
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC--CCc--EEEEeccchhHHHHHHhcCCCccCCcEEEEEE-CCch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK--NRR--IRYEALQSESGKKLLRRSGRAPDDISSVVLVE-KDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr--~~~--~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~-~Gr~ 118 (126)
.+.||=..|+-|......+.+... .++ |.++.+......++.+.+++. .+=++++++ +|+.
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~--~iPt~v~~~~~G~~ 89 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVD--GIPHFVFLDREGNE 89 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCC--CCCEEEEECCCCCE
Confidence 456788899999998887765432 233 444555554445677888763 344677775 5654
No 65
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=68.30 E-value=22 Score=23.85 Aligned_cols=60 Identities=10% Similarity=0.266 Sum_probs=39.7
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC--C-CcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK--N-RRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr--~-~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
.+.||=..|+-|......+.+... . +.+.|..+..+ ..++.+++++. ..=+++++.+|+.
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~--~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGK--CEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCC--cCcEEEEEECCEE
Confidence 467999999999988877755421 2 34667666554 34567788763 2337777777764
No 66
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=64.99 E-value=41 Score=24.23 Aligned_cols=61 Identities=7% Similarity=-0.036 Sum_probs=44.7
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC--CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
.+-||-..|+-|..-...+.+... .+.+.|.-+.-+.-.++.+++|+. .+=+++++.+|+.
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~--~iPTf~~fk~G~~ 80 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELY--DPPTVMFFFRNKH 80 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCC--CCCEEEEEECCEE
Confidence 344899999999988887755543 345778877766667788888864 3458888887775
No 67
>PTZ00102 disulphide isomerase; Provisional
Probab=64.76 E-value=27 Score=29.43 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=41.0
Q ss_pred ccEEEEeCCCcchHHHHHHHHHh-----CCCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCc
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDN-----DKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~-----Dr~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr 117 (126)
-.+.||.-.|+.|......+.+. +...++.|+.+......++.+++|+. ..-+++++.+|.
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~g~ 117 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVR--GYPTIKFFNKGN 117 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCC--cccEEEEEECCc
Confidence 45788999999999876544331 23457899988655555677888863 344666666544
No 68
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=64.63 E-value=19 Score=24.71 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=38.3
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC---CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK---NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr---~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
-.+.||-..|+-|.....-+.+... ..++.|..+....-..+..++|+ ...=+++++.+|+.
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V--~~~Pt~~i~~~g~~ 91 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGA--HSVPAIVGIINGQV 91 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCC--ccCCEEEEEECCEE
Confidence 3466999999999876654433222 23577777765444556777776 23335665566654
No 69
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=64.08 E-value=24 Score=23.49 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=29.8
Q ss_pred CccEEEEeC------CCcchHHHHHHHHHhCCCCcEEEEec-cchhHHHHHHh
Q 033158 54 SRPIMLYDG------VCNLCNGGVKFVRDNDKNRRIRYEAL-QSESGKKLLRR 99 (126)
Q Consensus 54 ~~~iV~FDG------~C~LC~~~V~fl~r~Dr~~~~~F~~l-QS~~g~~lL~~ 99 (126)
..++++|=- .|++|.+..+++..+. -.+...++ +.+..++.+..
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--i~y~~idv~~~~~~~~~l~~ 57 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG--VDFGTFDILEDEEVRQGLKE 57 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC--CCeEEEEcCCCHHHHHHHHH
Confidence 356777753 7999999999998875 35777776 33433344433
No 70
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=63.59 E-value=6.6 Score=28.66 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=25.9
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC---CCcEEEEecc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK---NRRIRYEALQ 89 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr---~~~~~F~~lQ 89 (126)
.+++||=.||+|......+.+... .-++.+.|+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 578999999999999888766553 3466776663
No 71
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=62.81 E-value=18 Score=22.40 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=29.5
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccc-h-hHHHHHHhcC
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQS-E-SGKKLLRRSG 101 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS-~-~g~~lL~~~G 101 (126)
.+|+-=-.|+.|....+++.+++- .+...++.. + ..+++.+..|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i--~~~~i~i~~~~~~~~~~~~~~~ 47 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGV--DYEEIDVDGDPALREEMINRSG 47 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC--cEEEEECCCCHHHHHHHHHHhC
Confidence 345555679999999999998754 677777754 2 3344444444
No 72
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=62.57 E-value=37 Score=23.51 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=37.8
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC-----CCcEEEEecc--chhHHHHHHhcCCCccCCcEEEEEECCc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK-----NRRIRYEALQ--SESGKKLLRRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr-----~~~~~F~~lQ--S~~g~~lL~~~Gl~~e~~dsvllv~~Gr 117 (126)
.+.||-..|+.|.....-+.+... .+.+.|..+. .....++.+.+++. ..=+++++.+|.
T Consensus 23 vV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~--~~Pt~~lf~~~~ 89 (114)
T cd02992 23 LVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVT--GYPTLRYFPPFS 89 (114)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCC--CCCEEEEECCCC
Confidence 466889999999988766544322 3468887765 33344566777762 334666665443
No 73
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=62.35 E-value=39 Score=22.10 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=40.3
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC---CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK---NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr---~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
-.+.||=..|+.|.....-+.+... ..++.|..+....-..+..++++ ...=+++++.+|+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i--~~~Pt~~~~~~g~~ 83 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFV--TALPTIYHAKDGVF 83 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCC--cccCEEEEeCCCCE
Confidence 3678899999999988776654432 23577777755444456677775 33345666666653
No 74
>PHA02125 thioredoxin-like protein
Probab=61.65 E-value=20 Score=22.92 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=33.4
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccchhHHHHHHhcCC
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGR 102 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS~~g~~lL~~~Gl 102 (126)
.++||=..|+-|.....++.+. .+.|..+..+..+++.+++++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~----~~~~~~vd~~~~~~l~~~~~v 44 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV----EYTYVDVDTDEGVELTAKHHI 44 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH----hheEEeeeCCCCHHHHHHcCC
Confidence 5788889999999988888654 356788876666677788775
No 75
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=60.66 E-value=19 Score=24.38 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=39.5
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC-CCcEEEEeccch-hHHHHHHhcCCCccCCcEEEEEECC
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK-NRRIRYEALQSE-SGKKLLRRSGRAPDDISSVVLVEKD 116 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr-~~~~~F~~lQS~-~g~~lL~~~Gl~~e~~dsvllv~~G 116 (126)
-.+.||=..|+-|......+.+.-. .+.+.|..+... ....+.+++++ ...=+++++++|
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V--~~~PT~~lf~~g 82 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV--VGFPTILLFNST 82 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCC--eecCEEEEEcCC
Confidence 4567888999999988877655432 234677777554 34456777776 334477777665
No 76
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=60.51 E-value=12 Score=25.65 Aligned_cols=35 Identities=9% Similarity=0.220 Sum_probs=27.5
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEecc
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQ 89 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQ 89 (126)
-.+.||-..|+-|......+.+..++..+.++.+.
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~ 62 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMALARQGRVPIYGIN 62 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 45779999999999999999777655557666664
No 77
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=59.84 E-value=41 Score=22.33 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=36.4
Q ss_pred cEEEEeCCCcchHHHHHHHHHhC-----CCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDND-----KNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~D-----r~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr 117 (126)
.+.||-..|+.|......+.+.- ....+.+..+.-.....+.+.+++. .+=+++++.+|.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~--~~Pt~~l~~~~~ 83 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVR--GYPTIKLLKGDL 83 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCc--cccEEEEEcCCC
Confidence 46688888999998776553322 1234777666443334566677763 334566666553
No 78
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=58.99 E-value=38 Score=25.65 Aligned_cols=60 Identities=5% Similarity=0.078 Sum_probs=42.4
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC-CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK-NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr-~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
.+-||--.|+-|...-..+.+.-. ...++|+-+..+.. .+...+++ ..+=+++++.+|..
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v--~~vPTlllyk~G~~ 147 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDT--DALPALLVYKGGEL 147 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCC--CCCCEEEEEECCEE
Confidence 455899999999987777755443 24689999987754 45667665 34458888877775
No 79
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=58.81 E-value=9.4 Score=29.78 Aligned_cols=34 Identities=9% Similarity=0.251 Sum_probs=25.7
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEec
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEAL 88 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~l 88 (126)
+.++|+-.+|+.|..+.-.+++.-.+-.+.+..+
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~V 105 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPY 105 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEE
Confidence 4888999999999999887777654434555544
No 80
>PRK10638 glutaredoxin 3; Provisional
Probab=58.62 E-value=35 Score=22.10 Aligned_cols=32 Identities=6% Similarity=0.257 Sum_probs=24.6
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEecc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQ 89 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQ 89 (126)
.+++---.|++|.+..+++.++.- .+...++.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi--~y~~~dv~ 35 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGV--SFQEIPID 35 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC--CcEEEECC
Confidence 455566899999999999998754 46666774
No 81
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=57.63 E-value=20 Score=25.19 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=16.8
Q ss_pred ccEEEEeCCCcchHHHHHHHH
Q 033158 55 RPIMLYDGVCNLCNGGVKFVR 75 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~ 75 (126)
..++|+|=.||.|......+.
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~~ 35 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEELE 35 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHHH
T ss_pred EEEEEECCCCHhHHHHHHHHh
Confidence 578899999999999876663
No 82
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=57.46 E-value=31 Score=23.82 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=25.7
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhC---CCCcEEEEeccc
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDND---KNRRIRYEALQS 90 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~D---r~~~~~F~~lQS 90 (126)
-.+.||--.|+.|.+...-+.+.- +...+.+..+.+
T Consensus 26 vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 26 VLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 456789999999999987775442 234577777743
No 83
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=55.48 E-value=41 Score=23.06 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=33.5
Q ss_pred ccEEEEeCCCcchHHHHHHHHH-----hCCCCcEEEEec--cch-----------hHHHHHHhcCCCccCCcEEEEEEC
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRD-----NDKNRRIRYEAL--QSE-----------SGKKLLRRSGRAPDDISSVVLVEK 115 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r-----~Dr~~~~~F~~l--QS~-----------~g~~lL~~~Gl~~e~~dsvllv~~ 115 (126)
-.+.|+-.+|+.|......+.. ...++.+.+..+ .+. ...++...+++. .+=+++++++
T Consensus 17 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~--~~Pt~~~~~~ 93 (125)
T cd02951 17 LLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR--FTPTVIFLDP 93 (125)
T ss_pred EEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc--cccEEEEEcC
Confidence 4577889999999998754421 111235655444 222 124566777753 3346666663
No 84
>PHA03050 glutaredoxin; Provisional
Probab=55.08 E-value=51 Score=23.16 Aligned_cols=36 Identities=8% Similarity=0.290 Sum_probs=28.4
Q ss_pred CccEEEEeCCCcchHHHHHHHHHhCCCC-cEEEEecc
Q 033158 54 SRPIMLYDGVCNLCNGGVKFVRDNDKNR-RIRYEALQ 89 (126)
Q Consensus 54 ~~~iV~FDG~C~LC~~~V~fl~r~Dr~~-~~~F~~lQ 89 (126)
.+.+||-=..||+|.+.-+++.++.-.. .+....+.
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~ 49 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIK 49 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECC
Confidence 4567777889999999999998886533 57777775
No 85
>PTZ00062 glutaredoxin; Provisional
Probab=54.27 E-value=40 Score=26.59 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=28.9
Q ss_pred ccEEEEe-C-----CCcchHHHHHHHHHhCCCCcEEEEec-cchhHHHHHHh
Q 033158 55 RPIMLYD-G-----VCNLCNGGVKFVRDNDKNRRIRYEAL-QSESGKKLLRR 99 (126)
Q Consensus 55 ~~iV~FD-G-----~C~LC~~~V~fl~r~Dr~~~~~F~~l-QS~~g~~lL~~ 99 (126)
.++++|= | .|++|.+.++++..+.- .+...++ +++..++.+..
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i--~y~~~DI~~d~~~~~~l~~ 162 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGV--KYETYNIFEDPDLREELKV 162 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCC--CEEEEEcCCCHHHHHHHHH
Confidence 4555554 4 79999999999998643 4556666 45555555544
No 86
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=54.18 E-value=34 Score=24.58 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=24.1
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhC---CCCcEEEEecc
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDND---KNRRIRYEALQ 89 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~D---r~~~~~F~~lQ 89 (126)
-.+.|+.-.|+ |..++.-+.+.- +...+.+..+.
T Consensus 25 vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~ 61 (152)
T cd00340 25 LLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFP 61 (152)
T ss_pred EEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEec
Confidence 34668899999 999988776543 22457777763
No 87
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=53.91 E-value=13 Score=27.07 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=25.2
Q ss_pred EEEEeCCCcchHHHHHHHHHhCC--CCcEEEEecc
Q 033158 57 IMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEALQ 89 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~lQ 89 (126)
.++||=.||+|.-....+.+.-. .-.+.+-|++
T Consensus 2 ~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 2 DFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred eEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 48999999999999988877643 2356766663
No 88
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=52.93 E-value=89 Score=24.90 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=42.7
Q ss_pred ccEEEEeCCCcchHHHHHHHHHh--CCCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDN--DKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~--Dr~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
-.+.||=-.|+-|.....-+.+. +-++.+.|..+......++.+++++. ..=+++++.+|+.
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~--~~PTl~~f~~G~~ 118 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIK--GYPTLLLFDKGKM 118 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCC--cCCEEEEEECCEE
Confidence 35789999999999887766443 22456888877665556677888763 3346666666654
No 89
>PRK10329 glutaredoxin-like protein; Provisional
Probab=52.22 E-value=61 Score=21.38 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=29.5
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEecc-chhHHHHHHhcC
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQ-SESGKKLLRRSG 101 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQ-S~~g~~lL~~~G 101 (126)
+.+|+---.|++|...-+++.++. =.+...++. .+...+.+...|
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~g--I~~~~idi~~~~~~~~~~~~~g 47 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRG--FDFEMINVDRVPEAAETLRAQG 47 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCC--CceEEEECCCCHHHHHHHHHcC
Confidence 356666689999999988887653 356777775 343444444433
No 90
>PRK10824 glutaredoxin-4; Provisional
Probab=52.19 E-value=57 Score=23.54 Aligned_cols=43 Identities=26% Similarity=0.494 Sum_probs=27.2
Q ss_pred ccEEEEe-C-----CCcchHHHHHHHHHhCCCCcEEEEec-cchhHHHHHHh
Q 033158 55 RPIMLYD-G-----VCNLCNGGVKFVRDNDKNRRIRYEAL-QSESGKKLLRR 99 (126)
Q Consensus 55 ~~iV~FD-G-----~C~LC~~~V~fl~r~Dr~~~~~F~~l-QS~~g~~lL~~ 99 (126)
.++|+|= | .||+|.+..+.+..+.- .+....+ +.+..++.+..
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i--~~~~idi~~d~~~~~~l~~ 64 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGE--RFAYVDILQNPDIRAELPK 64 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCC--CceEEEecCCHHHHHHHHH
Confidence 4555554 4 79999999999988753 3444555 34444444444
No 91
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.40 E-value=33 Score=26.27 Aligned_cols=65 Identities=8% Similarity=0.140 Sum_probs=49.5
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC--CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCchhhhh
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRYADII 122 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~~~Af 122 (126)
.+-|+=-+|+=|.-..--|.+.+. .+.|+|+-+.-+.--++-.+|++. .+=+++++.+|...|.|
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~--avPtvlvfknGe~~d~~ 131 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEIS--AVPTVLVFKNGEKVDRF 131 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhccee--eeeEEEEEECCEEeeee
Confidence 356899999999999988877765 589999999776666677888763 34577888888764443
No 92
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=51.16 E-value=64 Score=21.64 Aligned_cols=60 Identities=5% Similarity=0.026 Sum_probs=38.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCC-CcEEEEeccchh---HHHHHHhcCCCccCCcEEEEEECCch
Q 033158 57 IMLYDGVCNLCNGGVKFVRDNDKN-RRIRYEALQSES---GKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~Dr~-~~~~F~~lQS~~---g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
+-||=..|+-|......+.+.-.+ +.+.|+.+..+. ..++.+++++. .+=++++..+|+.
T Consensus 20 v~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~--~~Pt~~~~~~G~~ 83 (103)
T cd02985 20 LEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKII--EVPHFLFYKDGEK 83 (103)
T ss_pred EEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCC--cCCEEEEEeCCeE
Confidence 446667899999888777554222 567777774332 24577787763 3346777777764
No 93
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=50.93 E-value=70 Score=21.08 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=37.3
Q ss_pred cEEEEeCCCcchHHHHHHH------HHhCCCCcEEEEeccchh----HHHHHHhcCCCccCCcEEEEEE--CCch
Q 033158 56 PIMLYDGVCNLCNGGVKFV------RDNDKNRRIRYEALQSES----GKKLLRRSGRAPDDISSVVLVE--KDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl------~r~Dr~~~~~F~~lQS~~----g~~lL~~~Gl~~e~~dsvllv~--~Gr~ 118 (126)
.+.||=..|+.|......+ .+.-. +++.+..+.-.. ..++.+++|+. .+=++++++ +|+.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~~~~~i~--~~Pti~~~~~~~g~~ 86 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALK-KDVVLLRADWTKNDPEITALLKRFGVF--GPPTYLFYGPGGEPE 86 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHh-CCeEEEEEecCCCCHHHHHHHHHcCCC--CCCEEEEECCCCCCC
Confidence 4567777899999887544 22222 267777664322 45678888763 344677666 5664
No 94
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=48.82 E-value=4.2 Score=25.18 Aligned_cols=10 Identities=40% Similarity=1.032 Sum_probs=5.4
Q ss_pred eCCCcchHHH
Q 033158 61 DGVCNLCNGG 70 (126)
Q Consensus 61 DG~C~LC~~~ 70 (126)
+|.||+|.+.
T Consensus 20 ~~~CPlC~r~ 29 (54)
T PF04423_consen 20 KGCCPLCGRP 29 (54)
T ss_dssp SEE-TTT--E
T ss_pred CCcCCCCCCC
Confidence 4689999864
No 95
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=48.06 E-value=59 Score=23.22 Aligned_cols=35 Identities=11% Similarity=0.320 Sum_probs=23.4
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhC---CCCcEEEEecc
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDND---KNRRIRYEALQ 89 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~D---r~~~~~F~~lQ 89 (126)
-.+.||...|+.|......+.+.- .+..+.+..+.
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~ 101 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVN 101 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 457899999999998766654433 22346666653
No 96
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=47.84 E-value=41 Score=23.44 Aligned_cols=30 Identities=10% Similarity=0.205 Sum_probs=24.2
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCCcEEEEec
Q 033158 57 IMLYDGVCNLCNGGVKFVRDNDKNRRIRYEAL 88 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~l 88 (126)
+|+.=-.|+.|....+|+..++- .+.+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i--~~~~idi 31 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHGV--DYTAIDI 31 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcCC--ceEEecc
Confidence 46677789999999999999864 5666665
No 97
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=46.74 E-value=35 Score=21.92 Aligned_cols=43 Identities=16% Similarity=0.360 Sum_probs=26.1
Q ss_pred EeCCCcchHHHHHHHHHhCCCCcEEEEeccchhHHHHHHhcCCC
Q 033158 60 YDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRA 103 (126)
Q Consensus 60 FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS~~g~~lL~~~Gl~ 103 (126)
|--.|+.|...++.+..--.+..+...-......+++ ..||+.
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~~~~-~~ygv~ 48 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELGIEVEIIDIEDFEEI-EKYGVM 48 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETTTHHHH-HHTT-S
T ss_pred eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccCHHHH-HHcCCC
Confidence 5556999998888776554333344433334555555 788863
No 98
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=46.68 E-value=63 Score=24.17 Aligned_cols=33 Identities=12% Similarity=0.329 Sum_probs=23.9
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEec
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEAL 88 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~l 88 (126)
-.+.|+...|+-|..++..+.+...+ .+.+..+
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~-~~~vi~v 103 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQ-GIRVVGM 103 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHc-CCEEEEE
Confidence 35668999999999999988777543 3444444
No 99
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=45.66 E-value=25 Score=28.62 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=32.3
Q ss_pred ccceeecccCCCCCCCccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccch
Q 033158 39 VDYWVDATSSFFEPDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSE 91 (126)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS~ 91 (126)
+.-||+|.+.-= . ..|+|+||++...-+-..+..=++.-++++-+
T Consensus 4 iel~vkA~s~~~--~------~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~k 48 (221)
T KOG1422|consen 4 IELCVKAGSDGP--D------SLGDCPFCQRLFMTLELKGVPFKVTTVDLSRK 48 (221)
T ss_pred eEEEEEeccCCc--c------cCCCChhHHHHHHHHHHcCCCceEEEeecCCC
Confidence 445888876542 1 36999999999988887766556677777543
No 100
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=45.12 E-value=83 Score=22.81 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=25.0
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhC---CCCcEEEEeccc
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDND---KNRRIRYEALQS 90 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~D---r~~~~~F~~lQS 90 (126)
..+.|+.-.|+.|.....-+.++- .+.++.|+.+..
T Consensus 28 ~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~ 66 (171)
T cd02969 28 LVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINS 66 (171)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEec
Confidence 467789999999998665554433 235688777743
No 101
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=45.03 E-value=35 Score=22.11 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=26.5
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC---CCcEEEEeccc
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK---NRRIRYEALQS 90 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr---~~~~~F~~lQS 90 (126)
+.+|+.=-.|++|.+..+++.+.-. .-.+.+.++..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~ 40 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHA 40 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCC
Confidence 3567777789999999999998532 23567777754
No 102
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=44.55 E-value=42 Score=25.32 Aligned_cols=47 Identities=9% Similarity=0.243 Sum_probs=27.6
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCC--cEEEEeccc-hhHHHHHHhcCC
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNR--RIRYEALQS-ESGKKLLRRSGR 102 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~--~~~F~~lQS-~~g~~lL~~~Gl 102 (126)
.+.|+-..|+.|......+.+..++. ++.++.-.+ +..++..+++++
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~ 127 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHEL 127 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCC
Confidence 45578889999999988886554432 344444222 222334444444
No 103
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=43.39 E-value=30 Score=26.48 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=23.0
Q ss_pred CcccceeecccCCCCCCCccEEEEeCCCcchHHHH
Q 033158 37 DKVDYWVDATSSFFEPDSRPIMLYDGVCNLCNGGV 71 (126)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~iV~FDG~C~LC~~~V 71 (126)
+.++|=+ -.+|- .+....+.|||=.||.|...-
T Consensus 24 ~G~~Y~~-~~~p~-~~~~~VvEffdy~CphC~~~~ 56 (207)
T PRK10954 24 DGKQYTT-LDKPV-AGEPQVLEFFSFYCPHCYQFE 56 (207)
T ss_pred CCceeEE-ecCcC-CCCCeEEEEeCCCCccHHHhc
Confidence 4677544 33333 255678999999999999854
No 104
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=43.17 E-value=63 Score=22.51 Aligned_cols=47 Identities=13% Similarity=0.211 Sum_probs=31.8
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccc-----hhHHHHHHhcCCCcc
Q 033158 57 IMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQS-----ESGKKLLRRSGRAPD 105 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS-----~~g~~lL~~~Gl~~e 105 (126)
.|++=-.|+.|....+|+..++- .+.+.++.. +...++++..|...+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i--~~~~idi~~~~~~~~el~~l~~~~~~~~~ 53 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEANGI--EYQFIDIGEDGPTREELLDILSLLEDGID 53 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCC--ceEEEecCCChhhHHHHHHHHHHcCCCHH
Confidence 46677789999999999999764 677888732 223334455554333
No 105
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=42.70 E-value=26 Score=23.48 Aligned_cols=37 Identities=8% Similarity=0.304 Sum_probs=25.2
Q ss_pred CCCccEEEEeC-CCcchHHHHHHHHHhC---CCCcEEEEec
Q 033158 52 PDSRPIMLYDG-VCNLCNGGVKFVRDND---KNRRIRYEAL 88 (126)
Q Consensus 52 ~~~~~iV~FDG-~C~LC~~~V~fl~r~D---r~~~~~F~~l 88 (126)
+..-.+.||-+ .|+.|.....-+.+.- +...+.+..+
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~i 65 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGI 65 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEE
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeec
Confidence 44467888999 9999999886665433 2335555555
No 106
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=42.59 E-value=84 Score=19.64 Aligned_cols=42 Identities=10% Similarity=0.203 Sum_probs=27.8
Q ss_pred EEEeCCCcchHHHHHHHHHhCCCCcEEEEeccc-hhHHHHHHhcC
Q 033158 58 MLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQS-ESGKKLLRRSG 101 (126)
Q Consensus 58 V~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS-~~g~~lL~~~G 101 (126)
|+-=-.|+.|....+++.+++- .+...++.. +...+.+...|
T Consensus 3 ly~~~~Cp~C~~ak~~L~~~~i--~~~~~di~~~~~~~~~~~~~g 45 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALEEHGI--AFEEINIDEQPEAIDYVKAQG 45 (72)
T ss_pred EEeCCCCHHHHHHHHHHHHCCC--ceEEEECCCCHHHHHHHHHcC
Confidence 3333579999999999987654 677777753 33444444434
No 107
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=42.57 E-value=90 Score=21.97 Aligned_cols=60 Identities=8% Similarity=0.019 Sum_probs=39.3
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC--CCcEEEEeccchhHHHHH-HhcCCCccCCcEEEEEECCc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEALQSESGKKLL-RRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~lQS~~g~~lL-~~~Gl~~e~~dsvllv~~Gr 117 (126)
.+.||=..|+-|......+.+... ++.+.|+.+....-..+. +++++ ...=++++..+|+
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I--~~~PTl~lf~~g~ 95 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHF--FYFPVIHLYYRSR 95 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCC--cccCEEEEEECCc
Confidence 467888999999998777765543 356888888655444455 36665 3334666655554
No 108
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=42.01 E-value=88 Score=20.35 Aligned_cols=43 Identities=12% Similarity=0.356 Sum_probs=30.4
Q ss_pred EEEeCCCcchHHHHHHHHHhCCCC--cEEEEeccchhHHHHHHhcCC
Q 033158 58 MLYDGVCNLCNGGVKFVRDNDKNR--RIRYEALQSESGKKLLRRSGR 102 (126)
Q Consensus 58 V~FDG~C~LC~~~V~fl~r~Dr~~--~~~F~~lQS~~g~~lL~~~Gl 102 (126)
++==-.|+||......+.+.-... .+..+++.+.. ++.++||.
T Consensus 4 l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~--~l~~~Y~~ 48 (81)
T PF05768_consen 4 LYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDP--ELFEKYGY 48 (81)
T ss_dssp EEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTH--HHHHHSCT
T ss_pred EEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCH--HHHHHhcC
Confidence 333347999999999998754444 47778887544 47889985
No 109
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=41.26 E-value=90 Score=19.59 Aligned_cols=32 Identities=6% Similarity=0.198 Sum_probs=23.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccc
Q 033158 57 IMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQS 90 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS 90 (126)
+|+-=-.|+.|....+++.+++- .+...++..
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~i--~~~~~di~~ 33 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKGV--TFTEIRVDG 33 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcCC--CcEEEEecC
Confidence 34445679999999999998754 566666643
No 110
>smart00594 UAS UAS domain.
Probab=39.59 E-value=60 Score=22.69 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=37.5
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCC-----CCcEEE--EeccchhHHHHHHhcCCCccCCcEEEEEE
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDK-----NRRIRY--EALQSESGKKLLRRSGRAPDDISSVVLVE 114 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr-----~~~~~F--~~lQS~~g~~lL~~~Gl~~e~~dsvllv~ 114 (126)
.+.|+..+|+.|....+-+...+. +.++.+ +++.++.|.++...+++. ..=.+++++
T Consensus 31 lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~--~~P~~~~l~ 94 (122)
T smart00594 31 WLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLD--SFPYVAIVD 94 (122)
T ss_pred EEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcC--CCCEEEEEe
Confidence 455666779999998876544331 234555 566888999999998764 333555554
No 111
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=38.96 E-value=40 Score=24.79 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=22.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCC------CcEEEEec
Q 033158 57 IMLYDGVCNLCNGGVKFVRDNDKN------RRIRYEAL 88 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~Dr~------~~~~F~~l 88 (126)
.++||=.||+|.-....+.+.-.+ -.+.+.++
T Consensus 2 ~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~ 39 (201)
T cd03024 2 DIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPF 39 (201)
T ss_pred eEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeee
Confidence 489999999999888777654322 24555565
No 112
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=38.90 E-value=1.3e+02 Score=24.78 Aligned_cols=60 Identities=13% Similarity=0.278 Sum_probs=41.2
Q ss_pred cEEEEeCCCcchHHHHHHHHHh----C-CCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDN----D-KNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDR 117 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~----D-r~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr 117 (126)
.+.||--.|+.|.....-+.+. . ...++.|+.+......++.+++|+. ..=++++..+|+
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~g~ 86 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVS--GYPTLKIFRNGE 86 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCc--cccEEEEEeCCc
Confidence 5778999999999876555332 1 2346899988777667788888873 233666666554
No 113
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=38.89 E-value=75 Score=24.52 Aligned_cols=58 Identities=9% Similarity=0.200 Sum_probs=41.7
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCC-CcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKN-RRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~-~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
.+-||-..|+-|...-..+.+.-.+ ..++|+-+..... ...+++ ..+=++++..+|..
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i--~~lPTlliyk~G~~ 164 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPD--KNLPTILVYRNGDI 164 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCC--CCCCEEEEEECCEE
Confidence 3558999999999888877666543 4689999987652 355553 34458888888775
No 114
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=38.84 E-value=39 Score=21.10 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=24.2
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQS 90 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS 90 (126)
..|++--.|++|.+...++....- .+.+..+..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi--~y~~~~~~~ 34 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGI--PYEVVEVNP 34 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC--ceEEEECCc
Confidence 567777889999999999988754 355555543
No 115
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.37 E-value=25 Score=23.17 Aligned_cols=17 Identities=29% Similarity=0.684 Sum_probs=14.3
Q ss_pred eCCCcchHHHHHHHHHh
Q 033158 61 DGVCNLCNGGVKFVRDN 77 (126)
Q Consensus 61 DG~C~LC~~~V~fl~r~ 77 (126)
-|.||+|.+-++=++|-
T Consensus 43 ~g~CPiCRapi~dvIkT 59 (62)
T KOG4172|consen 43 HGCCPICRAPIKDVIKT 59 (62)
T ss_pred CCcCcchhhHHHHHHHh
Confidence 48999999999888763
No 116
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=38.36 E-value=53 Score=22.46 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=22.0
Q ss_pred cEEEE-eCCCcchHHHHHHHHHhCC---CCcEEEEeccc
Q 033158 56 PIMLY-DGVCNLCNGGVKFVRDNDK---NRRIRYEALQS 90 (126)
Q Consensus 56 ~iV~F-DG~C~LC~~~V~fl~r~Dr---~~~~~F~~lQS 90 (126)
.++|+ ...|+.|...+..+.+.-. .+.+.+..+..
T Consensus 26 ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~ 64 (140)
T cd02971 26 VLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSV 64 (140)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34445 7899999999887765432 23455555543
No 117
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=37.41 E-value=1.1e+02 Score=19.54 Aligned_cols=37 Identities=8% Similarity=0.231 Sum_probs=27.6
Q ss_pred CCccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccch
Q 033158 53 DSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSE 91 (126)
Q Consensus 53 ~~~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS~ 91 (126)
..+.+|+.=-.|++|.+..+++.+++- .+...++...
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi--~y~~idi~~~ 43 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKGY--DFEEIPLGND 43 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcCC--CcEEEECCCC
Confidence 446677777889999999999987653 5666677543
No 118
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=36.37 E-value=1e+02 Score=19.69 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=29.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhCC--CCcEEEEeccchhHHHHHHhcCC
Q 033158 57 IMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEALQSESGKKLLRRSGR 102 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~lQS~~g~~lL~~~Gl 102 (126)
+-||=..|+.|......+.+.-. ..++.|..+.... ....+|+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~---~a~~~~v 47 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDMN---EILEAGV 47 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHH---HHHHcCC
Confidence 56788999999999776644432 2568888888543 1345554
No 119
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=36.06 E-value=40 Score=25.66 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=25.9
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC--CCcEEEEecc
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEALQ 89 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~lQ 89 (126)
++-++||=.||+|--..+.+.+.-. .-.+.+-|++
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 3568999999999999888865432 2456777764
No 120
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=35.85 E-value=25 Score=28.33 Aligned_cols=14 Identities=29% Similarity=0.840 Sum_probs=10.6
Q ss_pred EEEEeCCCcchHHHH
Q 033158 57 IMLYDGVCNLCNGGV 71 (126)
Q Consensus 57 iV~FDG~C~LC~~~V 71 (126)
+-+|| +||||.+..
T Consensus 3 LYIYd-HCPfcvrar 16 (215)
T COG2999 3 LYIYD-HCPFCVRAR 16 (215)
T ss_pred eeEec-cChHHHHHH
Confidence 45677 699999863
No 121
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=34.93 E-value=89 Score=21.74 Aligned_cols=31 Identities=10% Similarity=0.279 Sum_probs=25.4
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEec
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEAL 88 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~l 88 (126)
.+|+.=-.|+.|....+|+..++- .+.+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi--~~~~idi 32 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQI--PFEERNL 32 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC--ceEEEec
Confidence 357777899999999999998754 6777777
No 122
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=34.25 E-value=1.1e+02 Score=20.69 Aligned_cols=31 Identities=3% Similarity=0.184 Sum_probs=24.6
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCCcEEEEecc
Q 033158 57 IMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQ 89 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQ 89 (126)
+|+.=-.|+.|....+|+..++- .+.+.++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i--~~~~idi~ 32 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEHGI--EYEFIDYL 32 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHcCC--CcEEEeec
Confidence 46666789999999999998764 57777773
No 123
>PHA02278 thioredoxin-like protein
Probab=33.56 E-value=1.6e+02 Score=20.26 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=40.0
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC----CCcEEEEeccchh--HHHHHHhcCCCccCCcEEEEEECCch
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK----NRRIRYEALQSES--GKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr----~~~~~F~~lQS~~--g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
-.+-||=-.|+-|......+.+... ..++.++.+.... ..++.+++++ ..+-++++..+|+.
T Consensus 17 vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I--~~iPT~i~fk~G~~ 84 (103)
T PHA02278 17 VIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI--MSTPVLIGYKDGQL 84 (103)
T ss_pred EEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC--ccccEEEEEECCEE
Confidence 3466888999999999888866532 2346666665421 1235667665 34457788777764
No 124
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=33.55 E-value=29 Score=25.31 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=20.5
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK 79 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr 79 (126)
+..++||=.||.|-..-..+.+.-.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~ 26 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKE 26 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHH
Confidence 4678999999999998888876543
No 125
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=33.34 E-value=53 Score=22.57 Aligned_cols=38 Identities=5% Similarity=0.043 Sum_probs=25.1
Q ss_pred CCCccEEEEeCCCcc-hHHHHHHHHHhC----CC--CcEEEEecc
Q 033158 52 PDSRPIMLYDGVCNL-CNGGVKFVRDND----KN--RRIRYEALQ 89 (126)
Q Consensus 52 ~~~~~iV~FDG~C~L-C~~~V~fl~r~D----r~--~~~~F~~lQ 89 (126)
+..-.++|+-..|+. |.....-+.+.- .+ +++.+..+.
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs 66 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFIS 66 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEE
Confidence 333467788999996 999888776542 12 246666663
No 126
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=33.32 E-value=1.1e+02 Score=20.03 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=20.0
Q ss_pred CCcchHHHHHHHHHhCCCCcEEEEeccc
Q 033158 63 VCNLCNGGVKFVRDNDKNRRIRYEALQS 90 (126)
Q Consensus 63 ~C~LC~~~V~fl~r~Dr~~~~~F~~lQS 90 (126)
.||+|.+.-+.|.+++-.=....+...+
T Consensus 10 ~CPyC~~ak~~L~~~g~~~~~i~~~~~~ 37 (80)
T COG0695 10 GCPYCKRAKRLLDRKGVDYEEIDVDDDE 37 (80)
T ss_pred CCchHHHHHHHHHHcCCCcEEEEecCCc
Confidence 3999999999999877644444444444
No 127
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=32.90 E-value=74 Score=19.61 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=19.0
Q ss_pred CCCccEEEEeCCCcchHHHHHHHHHh
Q 033158 52 PDSRPIMLYDGVCNLCNGGVKFVRDN 77 (126)
Q Consensus 52 ~~~~~iV~FDG~C~LC~~~V~fl~r~ 77 (126)
..++++|+|++.|......+..+.+.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~ 73 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKA 73 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHh
Confidence 35578999999877666666666654
No 128
>PRK12559 transcriptional regulator Spx; Provisional
Probab=32.86 E-value=1e+02 Score=22.35 Aligned_cols=31 Identities=10% Similarity=0.333 Sum_probs=24.8
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEec
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEAL 88 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~l 88 (126)
.+|+.-..|+-|....+|+..++- .+.+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi--~~~~~di 32 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQI--DYTEKNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC--CeEEEEe
Confidence 467888999999999999998864 4555554
No 129
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=32.59 E-value=1.2e+02 Score=18.67 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=25.3
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEeccchh
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSES 92 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS~~ 92 (126)
.+|+-=-.|++|.+..+++.+++- .+...++....
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i--~~~~~~v~~~~ 37 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGI--SYEEIPLGKDI 37 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCC--CcEEEECCCCh
Confidence 455555689999999999987643 56677775443
No 130
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=32.46 E-value=1.3e+02 Score=21.68 Aligned_cols=31 Identities=10% Similarity=0.322 Sum_probs=25.2
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEec
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEAL 88 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~l 88 (126)
.+|+.=-.|+.|....+|+..++- .+.+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi--~~~~idi 32 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDI--PFTERNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC--CcEEeec
Confidence 457777899999999999998865 5667766
No 131
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=31.80 E-value=1.7e+02 Score=19.97 Aligned_cols=22 Identities=9% Similarity=0.162 Sum_probs=16.9
Q ss_pred ccEEEEeCCCcchHHHHHHHHH
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRD 76 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r 76 (126)
-.+.|+-..|+-|.....-+.+
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~~ 42 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLVE 42 (131)
T ss_pred EEEEEECCCChHHHHHhHHHHH
Confidence 3566778999999998777653
No 132
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=31.17 E-value=1.1e+02 Score=22.50 Aligned_cols=33 Identities=9% Similarity=0.299 Sum_probs=23.0
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEec
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEAL 88 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~l 88 (126)
-.+.||-..|+-|.....-+.+...+ .+.+..+
T Consensus 66 vll~F~a~wC~~C~~~~p~l~~l~~~-~~~vi~V 98 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYLNELAKD-GLPIVGV 98 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHc-CCEEEEE
Confidence 34667888999999998888776543 3444444
No 133
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.09 E-value=53 Score=25.24 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=18.8
Q ss_pred CCccEEEEeCCCcchHHHHHHHHH
Q 033158 53 DSRPIMLYDGVCNLCNGGVKFVRD 76 (126)
Q Consensus 53 ~~~~iV~FDG~C~LC~~~V~fl~r 76 (126)
+-..++|+|-.||+|.....-+.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 446889999999999776666654
No 134
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=29.54 E-value=1.4e+02 Score=20.39 Aligned_cols=40 Identities=10% Similarity=0.274 Sum_probs=28.1
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEecc-chhHHHH
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQ-SESGKKL 96 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQ-S~~g~~l 96 (126)
+.+||==-.||+|.+.-+++.++. -.+....+. .+.+.++
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~--i~~~~vdid~~~~~~~~ 49 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLG--VNPAVHEIDKEPAGKDI 49 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC--CCCEEEEcCCCccHHHH
Confidence 455666678999999999998764 346677774 5554444
No 135
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=28.45 E-value=1.2e+02 Score=18.76 Aligned_cols=27 Identities=15% Similarity=0.291 Sum_probs=18.0
Q ss_pred CCCccEEEEeCCCcchHHHHHHHHHhC
Q 033158 52 PDSRPIMLYDGVCNLCNGGVKFVRDND 78 (126)
Q Consensus 52 ~~~~~iV~FDG~C~LC~~~V~fl~r~D 78 (126)
...+++|+||+.+.-+......+.+..
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G 80 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELG 80 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcC
Confidence 455789999987766655555555443
No 136
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=28.19 E-value=1.3e+02 Score=19.68 Aligned_cols=36 Identities=3% Similarity=-0.059 Sum_probs=25.6
Q ss_pred CCCccEEEEeCCCcchHHHHHHHHHhCCCCcEEEEecc
Q 033158 52 PDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQ 89 (126)
Q Consensus 52 ~~~~~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQ 89 (126)
..+...|++-..|+.|.+....+..++- .+.+..+.
T Consensus 15 ~~~~~~Ly~~~~sp~~~kv~~~L~~~gl--~~~~~~v~ 50 (89)
T cd03055 15 VPGIIRLYSMRFCPYAQRARLVLAAKNI--PHEVININ 50 (89)
T ss_pred CCCcEEEEeCCCCchHHHHHHHHHHcCC--CCeEEEeC
Confidence 5667788889999999988777766554 35544443
No 137
>PTZ00056 glutathione peroxidase; Provisional
Probab=28.04 E-value=1.3e+02 Score=23.02 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=32.0
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC---CCcEEEEeccc-----------hhHHHHHHhcCC
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK---NRRIRYEALQS-----------ESGKKLLRRSGR 102 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr---~~~~~F~~lQS-----------~~g~~lL~~~Gl 102 (126)
-.+.|.=..|+.|..++..+.++-+ ...+.++.+.. +..++.++.+|+
T Consensus 42 vlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~ 103 (199)
T PTZ00056 42 LMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI 103 (199)
T ss_pred EEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC
Confidence 3456778899999998877766543 23477777632 345666777765
No 138
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=27.91 E-value=71 Score=20.21 Aligned_cols=31 Identities=3% Similarity=-0.110 Sum_probs=22.5
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEec
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEAL 88 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~l 88 (126)
.+++....|++|.+...++..++- .+....+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi--~y~~~~v 32 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELEL--DVILYPC 32 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCC--cEEEEEC
Confidence 356666799999999888877654 4555555
No 139
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=27.79 E-value=1.5e+02 Score=18.85 Aligned_cols=33 Identities=9% Similarity=0.320 Sum_probs=23.3
Q ss_pred cEEEEeCCCcchHHHHHHHHHhC----CCCcEEEEec
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDND----KNRRIRYEAL 88 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~D----r~~~~~F~~l 88 (126)
.+.|+...|+-|..+..-+.+.- .++++.++.+
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~V 41 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFV 41 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 46788999999999988775433 2457777766
No 140
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=27.60 E-value=1.4e+02 Score=20.81 Aligned_cols=58 Identities=16% Similarity=0.254 Sum_probs=37.7
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC-----CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEE
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK-----NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVE 114 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr-----~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~ 114 (126)
..+++|+.+ .. .....+++.-.+ ++++.|+-+++......++.+|++.++.-.+.+..
T Consensus 19 ~~~l~f~~~-~~-~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~ 81 (111)
T cd03072 19 FLILFHDKD-DL-ESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDS 81 (111)
T ss_pred eEEEEecch-HH-HHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEc
Confidence 346677221 11 344455544333 38899999999988778999999987655554443
No 141
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=27.51 E-value=14 Score=20.69 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=14.9
Q ss_pred eCCCcchHHHHHHHHHhCC
Q 033158 61 DGVCNLCNGGVKFVRDNDK 79 (126)
Q Consensus 61 DG~C~LC~~~V~fl~r~Dr 79 (126)
|..|.+|...|.++.+.-.
T Consensus 1 ~~~C~~C~~~v~~i~~~l~ 19 (39)
T PF05184_consen 1 GDECDICKFVVKEIEKLLK 19 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHH
Confidence 3469999999999977643
No 142
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=27.06 E-value=21 Score=25.70 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=24.2
Q ss_pred ccee-ecccCCCCC----CCccEEEEeCCCcchHHHHHHHHHhCC
Q 033158 40 DYWV-DATSSFFEP----DSRPIMLYDGVCNLCNGGVKFVRDNDK 79 (126)
Q Consensus 40 ~~~~-~~~~~~~~~----~~~~iV~FDG~C~LC~~~V~fl~r~Dr 79 (126)
+||+ ++.+..| . ........||.|+.|.+. ++++.-+
T Consensus 1 ~YWl~~~~P~~~-~~~~~~~~~~~~~~gv~~~~~~~--~l~~mk~ 42 (143)
T PF01878_consen 1 RYWLLKANPENF-SIDDLEHWGVTVWDGVRNYQARK--NLKRMKP 42 (143)
T ss_dssp -EEEEEEBTTTS-HHHHHHHHSEEECHTEEEHHHHH--HHHC--T
T ss_pred CEEEEEeCCccc-CHHHhcccceEEEcCEeehhhhh--hhhcCCC
Confidence 3787 5555555 3 345689999999999987 5554433
No 143
>PF03660 PHF5: PHF5-like protein; InterPro: IPR005345 Phf5 is a member of a novel murine multigene family that is highly conserved during evolution and belongs to the superfamily of PHD-finger proteins. At least one example, from Mus musculus (Mouse), may act as a chromatin-associated protein []. The Schizosaccharomyces pombe (Fission yeast) ini1 gene is essential, required for splicing []. It is localised in the nucleus, but not detected in the nucleolus and can be complemented by human ini1 []. The proteins of this family contain five CXXC motifs.; PDB: 2K0A_A.
Probab=26.53 E-value=23 Score=25.79 Aligned_cols=13 Identities=38% Similarity=0.907 Sum_probs=4.7
Q ss_pred eCCCcchHHHHHH
Q 033158 61 DGVCNLCNGGVKF 73 (126)
Q Consensus 61 DG~C~LC~~~V~f 73 (126)
||.|+.|...|+=
T Consensus 27 dGkCpiCDS~Vrp 39 (106)
T PF03660_consen 27 DGKCPICDSYVRP 39 (106)
T ss_dssp TT--TTT------
T ss_pred CCcccccCCccCC
Confidence 8999999987753
No 144
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=26.51 E-value=2e+02 Score=19.20 Aligned_cols=58 Identities=7% Similarity=0.278 Sum_probs=34.3
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhC---CCCcEEEEeccchh-HHHHHH-hcCCCccCCcEEEEEE
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDND---KNRRIRYEALQSES-GKKLLR-RSGRAPDDISSVVLVE 114 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~D---r~~~~~F~~lQS~~-g~~lL~-~~Gl~~e~~dsvllv~ 114 (126)
-.+.||=..|+.|.....-+.+.. +...+.|..+..+. ...+.. .+++ ..+=+++++.
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v--~~~Pti~~f~ 86 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL--KSFPTILFFP 86 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC--CcCCEEEEEc
Confidence 356788888999998876664432 22358787776543 233333 3554 3344666554
No 145
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=26.17 E-value=2.8e+02 Score=20.68 Aligned_cols=60 Identities=7% Similarity=-0.068 Sum_probs=39.7
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCC--CcEEEEeccchhHHHHHHhcCCCccCCcEEE-EEECCc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKN--RRIRYEALQSESGKKLLRRSGRAPDDISSVV-LVEKDR 117 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~--~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvl-lv~~Gr 117 (126)
.+-||-..|+-|..-.-.+.+...+ +...|.-+.-+.-+++-..|++. .+.+.+ +..+|+
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~--~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELY--DPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCcc--CCCcEEEEEECCe
Confidence 3558899999999998888776643 34555555544555677888875 344444 555665
No 146
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=25.35 E-value=2e+02 Score=18.75 Aligned_cols=34 Identities=12% Similarity=0.285 Sum_probs=24.8
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCC---CcEEEEeccc
Q 033158 57 IMLYDGVCNLCNGGVKFVRDNDKN---RRIRYEALQS 90 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~Dr~---~~~~F~~lQS 90 (126)
+|+-=-.||+|...-+++.++... -.+...+++.
T Consensus 3 ~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~ 39 (86)
T TIGR02183 3 VIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHA 39 (86)
T ss_pred EEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCC
Confidence 455556899999999999887543 2466677764
No 147
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=24.73 E-value=1.7e+02 Score=17.95 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=22.4
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEecc
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQ 89 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQ 89 (126)
|+++.-..|++|.+....+...+-. +.+..+.
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~--~e~~~v~ 32 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGIT--VELREVE 32 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCC--cEEEEeC
Confidence 3567778899999988777776553 5544443
No 148
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=24.50 E-value=1.6e+02 Score=17.26 Aligned_cols=31 Identities=10% Similarity=0.280 Sum_probs=21.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCCcEEEEecc
Q 033158 57 IMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQ 89 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQ 89 (126)
++|+=-.|+.|.+....+...+ -.+...++.
T Consensus 3 ~l~~~~~c~~c~~~~~~l~~~~--i~~~~~~i~ 33 (73)
T cd02976 3 TVYTKPDCPYCKATKRFLDERG--IPFEEVDVD 33 (73)
T ss_pred EEEeCCCChhHHHHHHHHHHCC--CCeEEEeCC
Confidence 4555567999999887776643 356666664
No 149
>PF00752 XPG_N: XPG N-terminal domain; InterPro: IPR006085 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair [, ]. XP-G can be corrected by a 133 Kd nuclear protein, XPGC []. XPGC is an acidic protein that confers normal UV resistance in expressing cells []. It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms [, ]. XPGC cleaves one strand of the duplex at the border with the single-stranded region []. XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases [, ]; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents the N-terminal of XPG.; GO: 0004518 nuclease activity, 0006281 DNA repair; PDB: 1A77_A 1A76_A 1MC8_B 3QEB_Z 3QEA_Z 3QE9_Y 1UL1_Z 3Q8K_A 3Q8M_A 3Q8L_A ....
Probab=24.20 E-value=43 Score=22.52 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=9.8
Q ss_pred ccEEEEeCCCcchHHH
Q 033158 55 RPIMLYDGVCNLCNGG 70 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~ 70 (126)
.|+++|||.-+-.-..
T Consensus 74 ~PifVFDG~~~~~K~~ 89 (101)
T PF00752_consen 74 KPIFVFDGKPPPLKRE 89 (101)
T ss_dssp EEEEEE--STTGGCHH
T ss_pred EEEEEECCCCchhhHH
Confidence 7999999976644443
No 150
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=24.17 E-value=1.2e+02 Score=19.52 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=16.6
Q ss_pred CCCccEEEEeCCCcchHHHHHHHHH
Q 033158 52 PDSRPIMLYDGVCNLCNGGVKFVRD 76 (126)
Q Consensus 52 ~~~~~iV~FDG~C~LC~~~V~fl~r 76 (126)
..++++|+|++.+.-....+..+.+
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~ 83 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQD 83 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHH
Confidence 4567899998876665555555544
No 151
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=24.04 E-value=2.7e+02 Score=19.72 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=41.7
Q ss_pred EEEEe-CCCcchHHHHHHHHHhC--CCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEE
Q 033158 57 IMLYD-GVCNLCNGGVKFVRDND--KNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVE 114 (126)
Q Consensus 57 iV~FD-G~C~LC~~~V~fl~r~D--r~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~ 114 (126)
+++|+ .+..-.......++... .++++.|+-+.......++..+|++..++=.+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~ 159 (184)
T PF13848_consen 99 LILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFD 159 (184)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEE
T ss_pred EEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEE
Confidence 55554 56666777777664443 357788888887777778999999987776777666
No 152
>PF01586 Basic: Myogenic Basic domain; InterPro: IPR002546 This basic domain is found in the MyoD family of muscle specific proteins that control muscle development. The bHLH region of the MyoD family includes the basic domain and the Helix-loop-helix (HLH) motif. The bHLH region mediates specific DNA binding []. With 12 residues of the basic domain involved in DNA binding []. The basic domain forms an extended alpha helix in the structure.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0007517 muscle organ development, 0005634 nucleus; PDB: 1MDY_C.
Probab=23.98 E-value=26 Score=24.54 Aligned_cols=31 Identities=39% Similarity=0.700 Sum_probs=0.0
Q ss_pred cccC-CCCCCCccEEEEeCCCcchHHHHHHHHHhCC
Q 033158 45 ATSS-FFEPDSRPIMLYDGVCNLCNGGVKFVRDNDK 79 (126)
Q Consensus 45 ~~~~-~~~~~~~~iV~FDG~C~LC~~~V~fl~r~Dr 79 (126)
.|++ +|..+.+ ||||.|.+=... .|....+.
T Consensus 5 et~~~yF~p~~~---fYd~~~~~~s~l-~f~e~~~~ 36 (86)
T PF01586_consen 5 ETNPMYFFPDQR---FYDGPCFPSSDL-DFFEDLDP 36 (86)
T ss_dssp ------------------------------------
T ss_pred cccccccCchhh---hccCCCCCcccc-cCcccCCc
Confidence 3566 4423332 999999875553 35544443
No 153
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=23.85 E-value=1.9e+02 Score=21.18 Aligned_cols=34 Identities=6% Similarity=0.261 Sum_probs=23.0
Q ss_pred ccEEEEeCC-CcchHHHHHHHHHhCCC-CcEEEEec
Q 033158 55 RPIMLYDGV-CNLCNGGVKFVRDNDKN-RRIRYEAL 88 (126)
Q Consensus 55 ~~iV~FDG~-C~LC~~~V~fl~r~Dr~-~~~~F~~l 88 (126)
-.+.||=+. |+-|..++.-+.+.-.+ +.+.+..+
T Consensus 47 vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~v 82 (167)
T PRK00522 47 KVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCI 82 (167)
T ss_pred EEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEE
Confidence 456677777 99999999777665332 34555555
No 154
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=23.80 E-value=2.5e+02 Score=19.33 Aligned_cols=33 Identities=9% Similarity=0.223 Sum_probs=20.1
Q ss_pred EEEE-eCCCcchHHHHHHHHHhC---CCCcEEEEecc
Q 033158 57 IMLY-DGVCNLCNGGVKFVRDND---KNRRIRYEALQ 89 (126)
Q Consensus 57 iV~F-DG~C~LC~~~V~fl~r~D---r~~~~~F~~lQ 89 (126)
++|| -..|+.|...+.-+.+.- .+..+++..+.
T Consensus 33 l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs 69 (149)
T cd03018 33 LVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGIS 69 (149)
T ss_pred EEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 3344 567999998877665542 12346665553
No 155
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.65 E-value=2.3e+02 Score=24.20 Aligned_cols=80 Identities=14% Similarity=0.248 Sum_probs=53.8
Q ss_pred eeecccCCCCCC-----C-ccEE--EEeCCCcchHHHHHHHHHhC--CCCcEEEEeccchhHHHHHHhcCCCccCCcEEE
Q 033158 42 WVDATSSFFEPD-----S-RPIM--LYDGVCNLCNGGVKFVRDND--KNRRIRYEALQSESGKKLLRRSGRAPDDISSVV 111 (126)
Q Consensus 42 ~~~~~~~~~~~~-----~-~~iV--~FDG~C~LC~~~V~fl~r~D--r~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvl 111 (126)
=++-|..-||+. . .|+| |+=-.|+=|....--|.+.- -+|++.++-+.-+.-..+-.++|+ +.+=+++
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi--qsIPtV~ 102 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV--QSIPTVY 102 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc--CcCCeEE
Confidence 445566666432 1 2433 44556777776666665544 368999999977777778888885 5566888
Q ss_pred EEECCchhhhhh
Q 033158 112 LVEKDRYADIIF 123 (126)
Q Consensus 112 lv~~Gr~~~Af~ 123 (126)
++.+|+..++|-
T Consensus 103 af~dGqpVdgF~ 114 (304)
T COG3118 103 AFKDGQPVDGFQ 114 (304)
T ss_pred EeeCCcCccccC
Confidence 888898877764
No 156
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=23.44 E-value=1.7e+02 Score=17.33 Aligned_cols=41 Identities=10% Similarity=0.271 Sum_probs=28.6
Q ss_pred EEEeCCCcchHHHHHHHHHhCCCCcEEEEeccch-hHHHHHHhc
Q 033158 58 MLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSE-SGKKLLRRS 100 (126)
Q Consensus 58 V~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~lQS~-~g~~lL~~~ 100 (126)
++-=-.|+.|....+++.+++ -.+.+.++... ..++.+...
T Consensus 3 vy~~~~C~~C~~~~~~L~~~~--i~y~~~dv~~~~~~~~~l~~~ 44 (60)
T PF00462_consen 3 VYTKPGCPYCKKAKEFLDEKG--IPYEEVDVDEDEEAREELKEL 44 (60)
T ss_dssp EEESTTSHHHHHHHHHHHHTT--BEEEEEEGGGSHHHHHHHHHH
T ss_pred EEEcCCCcCHHHHHHHHHHcC--CeeeEcccccchhHHHHHHHH
Confidence 444457999999999997765 36888888664 444444443
No 157
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=23.22 E-value=1.9e+02 Score=20.17 Aligned_cols=46 Identities=7% Similarity=0.126 Sum_probs=34.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCCCcEEEEec-----cchhHHHHHHhcCCCc
Q 033158 57 IMLYDGVCNLCNGGVKFVRDNDKNRRIRYEAL-----QSESGKKLLRRSGRAP 104 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~l-----QS~~g~~lL~~~Gl~~ 104 (126)
++++--.|.-|.....|+..++. .+.+.++ ..+.-+++++..|++.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~~i--~~~~~di~~~p~t~~el~~~l~~~g~~~ 52 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDKGI--EPEVVKYLKNPPTKSELEAIFAKLGLTV 52 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHCCC--CeEEEeccCCCcCHHHHHHHHHHcCCch
Confidence 57888899999999999999754 5555554 5556666777777653
No 158
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=22.36 E-value=1.5e+02 Score=18.93 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=21.1
Q ss_pred CCCccEEEEeCCCcchHHHHHHHHHhC
Q 033158 52 PDSRPIMLYDGVCNLCNGGVKFVRDND 78 (126)
Q Consensus 52 ~~~~~iV~FDG~C~LC~~~V~fl~r~D 78 (126)
..++++|+|+..+..+...+..+++..
T Consensus 54 ~~~~~ivv~c~~g~~s~~a~~~l~~~G 80 (96)
T cd01444 54 DRDRPVVVYCYHGNSSAQLAQALREAG 80 (96)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHcC
Confidence 456789999998888888777777653
No 159
>PTZ00102 disulphide isomerase; Provisional
Probab=22.31 E-value=3.2e+02 Score=22.90 Aligned_cols=59 Identities=12% Similarity=0.244 Sum_probs=34.7
Q ss_pred cEEEEeCCCcchHHHHHHHHHhC----CCCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECC
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDND----KNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKD 116 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~D----r~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~G 116 (126)
.+.||.-.|+-|......+.+.. ..+.+.++.+....-......+++ ...=+++++.+|
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v--~~~Pt~~~~~~~ 441 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSW--SAFPTILFVKAG 441 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCC--cccCeEEEEECC
Confidence 46688999999998776664432 234677877765443333344443 233356665533
No 160
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.02 E-value=36 Score=23.76 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=10.0
Q ss_pred cEEEEeCCCcchH
Q 033158 56 PIMLYDGVCNLCN 68 (126)
Q Consensus 56 ~iV~FDG~C~LC~ 68 (126)
--+=|||.||-|.
T Consensus 26 CRm~Fdg~Cp~Ck 38 (84)
T KOG1493|consen 26 CRMPFDGCCPDCK 38 (84)
T ss_pred EecccCCcCCCCc
Confidence 3467999999884
No 161
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=21.93 E-value=2.1e+02 Score=20.75 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=30.6
Q ss_pred cEEEEeCCCcchHHHHHHHHHhCCCCcEEEEec-----cchhHHHHHHhcCC
Q 033158 56 PIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEAL-----QSESGKKLLRRSGR 102 (126)
Q Consensus 56 ~iV~FDG~C~LC~~~V~fl~r~Dr~~~~~F~~l-----QS~~g~~lL~~~Gl 102 (126)
.+|+.=-.|+-|....+|+..++- .+.+.++ ..+.-+++++..|.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i--~~~~~d~~~~~~s~~eL~~~l~~~~~ 51 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQL--SYKEQNLGKEPLTKEEILAILTKTEN 51 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC--CeEEEECCCCCCCHHHHHHHHHHhCC
Confidence 346666889999999999998764 5666665 33444445555543
No 162
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=21.84 E-value=1.4e+02 Score=19.54 Aligned_cols=25 Identities=4% Similarity=-0.029 Sum_probs=18.6
Q ss_pred CCccEEEEeCCCcchHHHHHHHHHh
Q 033158 53 DSRPIMLYDGVCNLCNGGVKFVRDN 77 (126)
Q Consensus 53 ~~~~iV~FDG~C~LC~~~V~fl~r~ 77 (126)
..+++++|++.+.-....+.++.+.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~ 81 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQ 81 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHc
Confidence 3578999988877777777777664
No 163
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=21.30 E-value=1.1e+02 Score=21.04 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=17.4
Q ss_pred CCCcchHHHHHHHHHhCCCCcEEEEec
Q 033158 62 GVCNLCNGGVKFVRDNDKNRRIRYEAL 88 (126)
Q Consensus 62 G~C~LC~~~V~fl~r~Dr~~~~~F~~l 88 (126)
|.|++|++..-.+....- .+....+
T Consensus 20 g~cpf~~rvrl~L~eKgi--~ye~~~v 44 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV--VFNVTTV 44 (91)
T ss_pred CCChhHHHHHHHHHHCCC--ceEEEEe
Confidence 899999998777766533 4444444
No 164
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.
Probab=21.29 E-value=45 Score=27.26 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=17.1
Q ss_pred ccceeecccCCCCCCCccEEEEeCCCcchH
Q 033158 39 VDYWVDATSSFFEPDSRPIMLYDGVCNLCN 68 (126)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~iV~FDG~C~LC~ 68 (126)
+.+.+..+....+..-.++++||| ++...
T Consensus 56 l~~~~~rl~~L~~~~i~pvfVFDG-~~~~~ 84 (316)
T cd00128 56 LQGFFYRTCRLLELGIKPVFVFDG-KPPPL 84 (316)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcC-CCchh
Confidence 344444444444334579999999 55554
No 165
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=20.85 E-value=1.7e+02 Score=25.42 Aligned_cols=50 Identities=10% Similarity=-0.017 Sum_probs=40.2
Q ss_pred CccEEEEeCCCcchHHHHHHHHHhCC-CCcEEEEeccchhHHHHHHhcCCC
Q 033158 54 SRPIMLYDGVCNLCNGGVKFVRDNDK-NRRIRYEALQSESGKKLLRRSGRA 103 (126)
Q Consensus 54 ~~~iV~FDG~C~LC~~~V~fl~r~Dr-~~~~~F~~lQS~~g~~lL~~~Gl~ 103 (126)
-...+|+==.||.|-..|+.+.+.-. +..+.+..+......++.+.|++.
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~ 168 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIM 168 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCc
Confidence 35789999999999999998866554 368888888888888888888753
No 166
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=20.83 E-value=3.4e+02 Score=19.67 Aligned_cols=60 Identities=3% Similarity=-0.051 Sum_probs=40.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCC-Cc-EEEEeccchhHHHHHHhcCCCccCCcEEEEEECCch
Q 033158 57 IMLYDGVCNLCNGGVKFVRDNDKN-RR-IRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRY 118 (126)
Q Consensus 57 iV~FDG~C~LC~~~V~fl~r~Dr~-~~-~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~Gr~ 118 (126)
+-|+-..|+-|..--..+.+.-.+ .+ ..|.-+.-..-.++-+.+++... -+.+++.+|+.
T Consensus 19 VdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~am--Ptfvffkngkh 80 (114)
T cd02986 19 LRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYI--PSTIFFFNGQH 80 (114)
T ss_pred EEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeC--cEEEEEECCcE
Confidence 337889999999988888777643 23 66666655556667788887311 26667766654
No 167
>smart00485 XPGN Xeroderma pigmentosum G N-region. domain in nucleases
Probab=20.33 E-value=54 Score=22.08 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=14.5
Q ss_pred ccceeecccCCCCCCCccEEEEeCC
Q 033158 39 VDYWVDATSSFFEPDSRPIMLYDGV 63 (126)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~iV~FDG~ 63 (126)
+.+.+.-...+.+..=.|+++|||.
T Consensus 56 l~~~~~rl~~L~~~~I~PifVFDG~ 80 (99)
T smart00485 56 LMGLFYRTCRLLEFGIKPIFVFDGK 80 (99)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4444444433333334799999995
No 168
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=20.31 E-value=1.8e+02 Score=17.50 Aligned_cols=42 Identities=12% Similarity=0.291 Sum_probs=26.2
Q ss_pred EeCCCcchHHHHHHHHHhCCCC--cEEEEeccch-hHHHHHHhcC
Q 033158 60 YDGVCNLCNGGVKFVRDNDKNR--RIRYEALQSE-SGKKLLRRSG 101 (126)
Q Consensus 60 FDG~C~LC~~~V~fl~r~Dr~~--~~~F~~lQS~-~g~~lL~~~G 101 (126)
|=-.|+.|......+....... .+.+..+... ..+.....++
T Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFG 84 (127)
T ss_pred EcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHh
Confidence 3689999999988886665432 3556655553 3333444444
No 169
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=20.21 E-value=2.9e+02 Score=19.37 Aligned_cols=21 Identities=14% Similarity=0.195 Sum_probs=13.3
Q ss_pred ccEEEEe--CCCcchHHHHHHHH
Q 033158 55 RPIMLYD--GVCNLCNGGVKFVR 75 (126)
Q Consensus 55 ~~iV~FD--G~C~LC~~~V~fl~ 75 (126)
..+|+|= ..|+.|.....-+.
T Consensus 32 ~~ll~f~~~~~~p~C~~~~~~l~ 54 (154)
T PRK09437 32 RVLVYFYPKAMTPGCTVQACGLR 54 (154)
T ss_pred CEEEEEECCCCCCchHHHHHHHH
Confidence 3455553 36999987765444
No 170
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.18 E-value=2e+02 Score=23.98 Aligned_cols=60 Identities=13% Similarity=0.271 Sum_probs=42.8
Q ss_pred ccEEEEeCCCcchHHHHHHHHHhCC--CCcEEEEeccchhHHHHHHhcCCCccCCcEEEEEECC
Q 033158 55 RPIMLYDGVCNLCNGGVKFVRDNDK--NRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKD 116 (126)
Q Consensus 55 ~~iV~FDG~C~LC~~~V~fl~r~Dr--~~~~~F~~lQS~~g~~lL~~~Gl~~e~~dsvllv~~G 116 (126)
-.+.||+-.|+-|...+.-+.+.-+ ++.+.+..+....=+.+.+.|++. ..-++.+...|
T Consensus 50 ~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~--gfPtl~~f~~~ 111 (383)
T KOG0191|consen 50 WLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQ--GFPTLKVFRPG 111 (383)
T ss_pred eEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCc--cCcEEEEEcCC
Confidence 5789999999999999887765432 457888888777767788888863 22355444433
No 171
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=20.10 E-value=63 Score=26.84 Aligned_cols=50 Identities=22% Similarity=0.442 Sum_probs=34.5
Q ss_pred cccCCCceeeeeeecccc-cccceeeeeeeCCCCCCcccceeecccCCCCCCCccEEEEeCC
Q 033158 3 LLVPGGGCARLAISHPAQ-VSRRTAVVATLSPPKRDKVDYWVDATSSFFEPDSRPIMLYDGV 63 (126)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~FDG~ 63 (126)
+.+|+|.+|-+-...+.. -.-+..+.-|--||++-..| + +++.+|+|+|.
T Consensus 115 v~~pSGAiGGlD~l~aar~g~i~~V~lttrKpp~~lg~d---------l--~~~ktVlfeG~ 165 (255)
T COG1712 115 VYLPSGAIGGLDALAAARVGGIEEVVLTTRKPPAELGID---------L--EDKKTVLFEGS 165 (255)
T ss_pred EEecCccchhHHHHHHhhcCCeeEEEEEeecChHHhCcC---------c--ccCceEEEecc
Confidence 456788888887777776 44556777777888733333 3 23789999994
No 172
>PHA02540 61 DNA primase; Provisional
Probab=20.04 E-value=75 Score=27.19 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=36.9
Q ss_pred CccEEEEeCCCcchHHHHHHHHHh-CCCCcEEEEec---cchhHHHHHHhcCCCccCCcE
Q 033158 54 SRPIMLYDGVCNLCNGGVKFVRDN-DKNRRIRYEAL---QSESGKKLLRRSGRAPDDISS 109 (126)
Q Consensus 54 ~~~iV~FDG~C~LC~~~V~fl~r~-Dr~~~~~F~~l---QS~~g~~lL~~~Gl~~e~~ds 109 (126)
.+.++.||++-+- .+.++-+... +..-++...+. ++++-.+++...|.+.+++..
T Consensus 257 ~~vvl~~D~Da~~-~at~r~~~~l~~~g~~v~v~~~~~~~~kDpde~i~~~G~~~~~~~~ 315 (337)
T PHA02540 257 DTRVWVLDNEPRH-PDTIKRISKLIDAGEKVVIWDKCPWPSKDINDMIMKGGATPEDIME 315 (337)
T ss_pred ceEEEEECCchhH-HHHHHHHHHHHHCCCeEEEecCCCCCCcCHHHHHHhcCCCHHHHHH
Confidence 4689999999664 5666777555 33345555544 345666788888887776644
Done!