Query 033159
Match_columns 126
No_of_seqs 180 out of 1296
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:32:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0537 Cytochrome b5 [Energy 99.9 2.6E-28 5.6E-33 174.5 3.1 76 8-83 13-90 (124)
2 PF00173 Cyt-b5: Cytochrome b5 99.8 3.1E-20 6.7E-25 120.3 3.8 65 9-73 9-76 (76)
3 KOG0536 Flavohemoprotein b5+b5 99.8 5.6E-20 1.2E-24 132.3 3.5 67 8-74 76-144 (145)
4 PLN03198 delta6-acyl-lipid des 99.7 1E-18 2.3E-23 149.6 4.9 67 8-76 112-180 (526)
5 PLN03199 delta6-acyl-lipid des 99.7 4.8E-18 1E-22 144.2 7.1 68 8-78 32-101 (485)
6 COG5274 CYB5 Cytochrome b invo 99.7 1E-17 2.3E-22 124.4 4.2 68 8-75 58-127 (164)
7 PLN02252 nitrate reductase [NA 99.7 7.4E-17 1.6E-21 145.1 5.4 70 8-78 526-597 (888)
8 KOG4232 Delta 6-fatty acid des 99.5 5.2E-14 1.1E-18 117.2 7.7 68 9-77 17-87 (430)
9 KOG4576 Sulfite oxidase, heme- 99.3 1.5E-12 3.3E-17 94.5 3.4 71 9-79 89-163 (167)
10 COG4892 Predicted heme/steroid 90.1 0.65 1.4E-05 30.5 4.1 57 14-74 17-77 (81)
11 KOG1110 Putative steroid membr 88.4 0.56 1.2E-05 35.8 3.2 42 9-52 68-112 (183)
12 KOG1108 Predicted heme/steroid 69.3 3.9 8.5E-05 32.7 2.3 37 15-53 78-117 (281)
13 cd00256 VATPase_H VATPase_H, r 62.0 2 4.3E-05 36.7 -0.7 45 12-58 365-409 (429)
14 PF11698 V-ATPase_H_C: V-ATPas 61.2 0.72 1.6E-05 32.8 -2.9 30 21-50 64-93 (119)
15 PF10529 Hist_rich_Ca-bd: Hist 55.8 4.9 0.00011 18.6 0.4 11 5-15 1-11 (15)
16 PHA02819 hypothetical protein; 53.8 40 0.00086 21.9 4.5 15 110-124 54-68 (71)
17 PHA03054 IMV membrane protein; 52.3 50 0.0011 21.5 4.7 15 110-124 56-70 (72)
18 PHA02844 putative transmembran 51.8 43 0.00094 22.0 4.5 13 112-124 58-70 (75)
19 PF14901 Jiv90: Cleavage induc 51.1 12 0.00026 25.7 1.8 10 21-30 64-73 (94)
20 PHA02650 hypothetical protein; 44.8 62 0.0013 21.5 4.4 15 110-124 57-71 (81)
21 KOG2759 Vacuolar H+-ATPase V1 44.3 5.6 0.00012 34.1 -0.7 45 12-58 378-422 (442)
22 COG3424 BcsA Predicted naringe 40.6 9.7 0.00021 31.7 0.1 20 24-44 270-289 (356)
23 COG3197 FixS Uncharacterized p 39.6 30 0.00065 21.7 2.2 18 104-121 4-21 (58)
24 TIGR00847 ccoS cytochrome oxid 34.3 72 0.0016 19.3 3.3 16 104-119 4-19 (51)
25 PHA02975 hypothetical protein; 33.0 1.1E+02 0.0024 19.8 4.1 14 111-124 53-66 (69)
26 PF03597 CcoS: Cytochrome oxid 32.8 72 0.0016 18.7 3.0 15 104-118 3-17 (45)
27 PF06781 UPF0233: Uncharacteri 32.1 1.5E+02 0.0032 20.0 4.8 18 107-124 37-54 (87)
28 PRK14758 hypothetical protein; 31.5 87 0.0019 16.5 3.2 20 104-123 7-26 (27)
29 PRK10920 putative uroporphyrin 30.3 83 0.0018 26.7 4.1 16 108-123 43-58 (390)
30 PHA03029 hypothetical protein; 30.3 85 0.0018 20.9 3.3 27 99-125 54-82 (92)
31 PHA02692 hypothetical protein; 29.5 1.3E+02 0.0028 19.5 4.0 13 112-124 56-68 (70)
32 PF02797 Chal_sti_synt_C: Chal 28.9 19 0.0004 26.3 0.0 16 28-43 62-77 (151)
33 PF04375 HemX: HemX; InterPro 28.7 1.8E+02 0.0039 24.1 5.8 10 113-122 41-50 (372)
34 PF15086 UPF0542: Uncharacteri 28.4 1.2E+02 0.0027 19.8 3.8 23 98-120 21-43 (74)
35 COG3088 CcmH Uncharacterized p 27.6 93 0.002 23.1 3.5 24 97-120 100-123 (153)
36 TIGR03147 cyt_nit_nrfF cytochr 27.3 84 0.0018 22.6 3.1 19 102-120 101-119 (126)
37 PF04415 DUF515: Protein of un 26.6 1.4E+02 0.0031 25.6 4.9 19 107-125 38-56 (416)
38 PF14283 DUF4366: Domain of un 26.4 76 0.0016 24.7 3.0 15 110-124 167-181 (218)
39 PF12652 CotJB: CotJB protein; 24.5 14 0.00031 24.3 -1.1 22 21-42 14-35 (78)
40 PRK00159 putative septation in 23.9 2.4E+02 0.0051 19.0 5.2 17 108-124 38-54 (87)
41 PF07533 BRK: BRK domain; Int 23.7 16 0.00035 21.6 -0.9 15 21-35 26-40 (46)
42 PF04835 Pox_A9: A9 protein co 22.3 2E+02 0.0044 17.7 4.0 29 96-124 19-48 (54)
43 PF12794 MscS_TM: Mechanosensi 20.2 1.3E+02 0.0028 24.6 3.4 20 105-124 204-223 (340)
44 PF12575 DUF3753: Protein of u 20.1 2.6E+02 0.0057 18.2 4.2 12 113-124 59-70 (72)
No 1
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.94 E-value=2.6e-28 Score=174.53 Aligned_cols=76 Identities=46% Similarity=0.880 Sum_probs=71.5
Q ss_pred cccccCCCeEEEE--EEeecccccccCCCCchhchhccCCcchhhhhhcCCCHHHHHhHhhhcccccCCCCCCCCCCC
Q 033159 8 FALVLEKNKWFYM--QVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAY 83 (126)
Q Consensus 8 ~~H~~~~~~Wvii--~VYDvT~f~~~HPGG~~iL~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~~~~~~~~~~~ 83 (126)
.+||+++||||+| +|||||+|+++||||.++|+.+||+|||+.|++.+||..|++||++|+||.+.+++.+.....
T Consensus 13 ~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig~~~~~~~~~~~~~ 90 (124)
T KOG0537|consen 13 AKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIGEVPTTARPVVWSN 90 (124)
T ss_pred HhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccccccCCCccceecc
Confidence 5799999999999 999999999999999999999999999999999999999999999999999998877766543
No 2
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.80 E-value=3.1e-20 Score=120.27 Aligned_cols=65 Identities=38% Similarity=0.714 Sum_probs=59.5
Q ss_pred ccccCCCeEEEE--EEeecccccccCCCCchhchhccCCcchhhhhhcCCCHHHHHhHhh-hcccccC
Q 033159 9 ALVLEKNKWFYM--QVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDK-YYIGDID 73 (126)
Q Consensus 9 ~H~~~~~~Wvii--~VYDvT~f~~~HPGG~~iL~~~aGkDaT~~F~~~~Hs~~a~~~L~~-~~IG~l~ 73 (126)
+||++++||++| +|||||+|+..||||...+..++|+|+|+.|....|+..+.++|++ |+||.++
T Consensus 9 ~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~~~~~~~l~~~~~vG~ld 76 (76)
T PF00173_consen 9 KHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHSWWAEKCLEKYYKVGYLD 76 (76)
T ss_dssp TTEETTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHHHHHHHHHHGCGEEEEE-
T ss_pred hhCCCCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCcHHHHHHccCCCEEEEeC
Confidence 688999999999 9999999999999999999999999999999444599889999998 9999874
No 3
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.79 E-value=5.6e-20 Score=132.29 Aligned_cols=67 Identities=27% Similarity=0.518 Sum_probs=62.8
Q ss_pred cccccCCCeEEEE--EEeecccccccCCCCchhchhccCCcchhhhhhcCCCHHHHHhHhhhcccccCC
Q 033159 8 FALVLEKNKWFYM--QVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 74 (126)
Q Consensus 8 ~~H~~~~~~Wvii--~VYDvT~f~~~HPGG~~iL~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~~ 74 (126)
..||+.+|||++| +|||||.|++.||||...|++++|+|+|..|..+|-+.+-.++|+.++||.+.+
T Consensus 76 ~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fnk~H~WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 76 KKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFNKYHAWVNYEELLKKCFVGVLVD 144 (145)
T ss_pred HhhCCccceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHHHHHHHhcHHHHHhhceeeeecc
Confidence 3699999999999 999999999999999999999999999999999977778889999999998764
No 4
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.74 E-value=1e-18 Score=149.62 Aligned_cols=67 Identities=36% Similarity=0.735 Sum_probs=62.5
Q ss_pred cccccCCCeEEEE--EEeecccccccCCCCchhchhccCCcchhhhhhcCCCHHHHHhHhhhcccccCCCC
Q 033159 8 FALVLEKNKWFYM--QVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPST 76 (126)
Q Consensus 8 ~~H~~~~~~Wvii--~VYDvT~f~~~HPGG~~iL~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~~~~ 76 (126)
.+|++++|||++| +|||+|+|+++||||. +|..++|+|+|+.|+++ |+..+.++|++|+||++++.+
T Consensus 112 ~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~~~aG~DaT~~F~~~-H~~~~~~~l~~~~IG~l~~~~ 180 (526)
T PLN03198 112 AAHNKPNDCWIVIKNKVYDVSDFAAEHPGGS-VISTYFGRDGTDAFSSF-HAASTWKILQDFYIGDVDNVE 180 (526)
T ss_pred HhhCCCCCeEEEECCEEEecHHHHHhCCCch-HHHHhcCCcHhHHHHHh-cCHHHHHHHhhCcceecCCcc
Confidence 3799999999999 9999999999999998 89999999999999998 999999999999999997643
No 5
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.73 E-value=4.8e-18 Score=144.18 Aligned_cols=68 Identities=35% Similarity=0.727 Sum_probs=62.0
Q ss_pred cccccCCCeEEEE--EEeecccccccCCCCchhchhccCCcchhhhhhcCCCHHHHHhHhhhcccccCCCCCC
Q 033159 8 FALVLEKNKWFYM--QVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVP 78 (126)
Q Consensus 8 ~~H~~~~~~Wvii--~VYDvT~f~~~HPGG~~iL~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~~~~~~ 78 (126)
.+|++++|||++| +|||||+|+ +||||. +|..++|+|+|+.|+.+ ||..+.++|++|+||++++++.+
T Consensus 32 ~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~-H~~~~~~~l~~~~iG~l~~~~~~ 101 (485)
T PLN03199 32 KKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAF-HAPGSQALMKKFYIGDLIPESTE 101 (485)
T ss_pred HhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHh-cCHHHHHHHHhcccccccccccc
Confidence 3689999999999 999999997 899998 78899999999999987 99999999999999999776543
No 6
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.70 E-value=1e-17 Score=124.37 Aligned_cols=68 Identities=31% Similarity=0.680 Sum_probs=65.0
Q ss_pred cccccCCCeEEEE--EEeecccccccCCCCchhchhccCCcchhhhhhcCCCHHHHHhHhhhcccccCCC
Q 033159 8 FALVLEKNKWFYM--QVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPS 75 (126)
Q Consensus 8 ~~H~~~~~~Wvii--~VYDvT~f~~~HPGG~~iL~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~~~ 75 (126)
+.||++++||++| +|||||.|+++||||+.+|+..+|+|+|+.|...+|+..+.++++.++||.+...
T Consensus 58 ~~h~~~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat~~f~~~~~~~~~~~llk~~yv~~v~r~ 127 (164)
T COG5274 58 AKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQIGNLLKDVYVDQVHRP 127 (164)
T ss_pred HHhcCccceEEEEcCEEEEhhhccccCCCcceeehhccCchhhhhhcccccchhHHhhhhceeeecccCc
Confidence 5799999999999 9999999999999999999999999999999999999999899999999998765
No 7
>PLN02252 nitrate reductase [NADPH]
Probab=99.66 E-value=7.4e-17 Score=145.06 Aligned_cols=70 Identities=33% Similarity=0.733 Sum_probs=65.2
Q ss_pred cccccCCCeEEEE--EEeecccccccCCCCchhchhccCCcchhhhhhcCCCHHHHHhHhhhcccccCCCCCC
Q 033159 8 FALVLEKNKWFYM--QVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVP 78 (126)
Q Consensus 8 ~~H~~~~~~Wvii--~VYDvT~f~~~HPGG~~iL~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~~~~~~ 78 (126)
.+|++.++||++| +|||+|+|++.||||..+|+.++|+|+|+.|+.+ |+..|.++|++|+||.+.+....
T Consensus 526 ~~h~~~~~~Wivi~g~VYDvT~fl~~HPGG~~~I~~~aG~DaT~~F~~~-Hs~~a~~~L~~~~IG~l~~~~~~ 597 (888)
T PLN02252 526 RKHNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGELVTTGAA 597 (888)
T ss_pred HhhCcCCCeEEEECCEEEeCHHHHHHCCChHHHHHhhcCCCcHHHHhhh-hhHHHHHHHHhCcCCcccccccc
Confidence 3689999999999 9999999999999999999999999999999987 99999999999999999866543
No 8
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.50 E-value=5.2e-14 Score=117.20 Aligned_cols=68 Identities=31% Similarity=0.635 Sum_probs=62.1
Q ss_pred ccccCCCeEEEE-EEeecccccccCCCCchhchhccCCcchhhhhhcCCCHH--HHHhHhhhcccccCCCCC
Q 033159 9 ALVLEKNKWFYM-QVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDS--AREMMDKYYIGDIDPSTV 77 (126)
Q Consensus 9 ~H~~~~~~Wvii-~VYDvT~f~~~HPGG~~iL~~~aGkDaT~~F~~~~Hs~~--a~~~L~~~~IG~l~~~~~ 77 (126)
.|++.+|.|++| .|||+|+|++.||||+.+|..++|+|||++|+++ |... +.+.|+.+.+|...++..
T Consensus 17 ~~~~~~~~W~~id~vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~Af-H~~~~~~~~~l~~l~~~~~~pe~~ 87 (430)
T KOG4232|consen 17 KHDKAEGLWLVIDGVYDISDWIKRHPGGSRVIEHYAGQDATDAFEAF-HPGTAFAYKHLKPLLIGELSPEIP 87 (430)
T ss_pred hccCCCceEEEeeccccHHHHHHhCCCchhHHHHhcCCccchHHHHh-CCChHHHHHHHHHHHcCCcCcccc
Confidence 589999999999 9999999999999999999999999999999998 7776 777899999999887543
No 9
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=99.30 E-value=1.5e-12 Score=94.49 Aligned_cols=71 Identities=31% Similarity=0.607 Sum_probs=55.9
Q ss_pred ccccCC-CeEEEE--EEeecccccccCCCCchhchhccCC-cchhhhhhcCCCHHHHHhHhhhcccccCCCCCCC
Q 033159 9 ALVLEK-NKWFYM--QVYDVSSFMDDHPGGDEVLISATGK-DATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPR 79 (126)
Q Consensus 9 ~H~~~~-~~Wvii--~VYDvT~f~~~HPGG~~iL~~~aGk-DaT~~F~~~~Hs~~a~~~L~~~~IG~l~~~~~~~ 79 (126)
.|+++. ..||.+ .|||||+|++.||||.++++...|- |..+.....|....+.++|+.|+||++++.+.+.
T Consensus 89 ~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdKillAAG~a~dPFWalY~qHnt~eVlElLegyrIG~L~~~dv~~ 163 (167)
T KOG4576|consen 89 SHTSPETRIWVTYGSGVYDVTDFVDLHPGGDKILLAAGGALDPFWALYAQHNTSEVLELLEGYRIGELNPEDVVA 163 (167)
T ss_pred hcCCCccceEEEecCcceeHHHHHHhCCCcceeeeecCCCcCcHHHHHHHhhHHHHHHHHhhcccccCChhhccc
Confidence 466665 589999 9999999999999997766655442 5555555555666799999999999999887765
No 10
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=90.14 E-value=0.65 Score=30.51 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=35.8
Q ss_pred CCeEEEE--EEeecccccccCCCCchhchhccCCcchhhhhhc-CCCHHHHHhHhhh-cccccCC
Q 033159 14 KNKWFYM--QVYDVSSFMDDHPGGDEVLISATGKDATNDFEDV-GHSDSAREMMDKY-YIGDIDP 74 (126)
Q Consensus 14 ~~~Wvii--~VYDvT~f~~~HPGG~~iL~~~aGkDaT~~F~~~-~Hs~~a~~~L~~~-~IG~l~~ 74 (126)
+..+|.+ .||||+.=-. --+|...=...+|+|.|+.|++- .|.. ++|++| .||.+..
T Consensus 17 GpaYiA~~G~VYDvS~s~~-W~dGtHqglhsaG~DLs~~~~~~aphg~---eil~~~PvVG~L~k 77 (81)
T COG4892 17 GPAYIAVNGTVYDVSLSPS-WGDGTHQGLHSAGKDLSSEFNSCAPHGM---EILTSLPVVGALIK 77 (81)
T ss_pred CCeEEEECCEEEeeccCcc-cCCCccccccccchhHHHHHhhcCCchh---HHHhcCchhheeec
Confidence 3578888 9999974221 12344333456899999999843 3443 455554 6676654
No 11
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=88.36 E-value=0.56 Score=35.76 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=30.4
Q ss_pred ccccCCCeEEEE--EEeeccccc-ccCCCCchhchhccCCcchhhhh
Q 033159 9 ALVLEKNKWFYM--QVYDVSSFM-DDHPGGDEVLISATGKDATNDFE 52 (126)
Q Consensus 9 ~H~~~~~~Wvii--~VYDvT~f~-~~HPGG~~iL~~~aGkDaT~~F~ 52 (126)
.+.......+.| +|||||.=. -.-|||+- ..+||+||+....
T Consensus 68 Gs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY--~~fAG~DASR~La 112 (183)
T KOG1110|consen 68 GSDPDKPILLAINGKVYDVTRGREFYGPGGPY--SLFAGKDASRGLA 112 (183)
T ss_pred CCCCCCceEEEecceEEEecCCccccCCCCCc--hhhcccchHHHHH
Confidence 344455677888 999998533 35799974 4589999998754
No 12
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=69.30 E-value=3.9 Score=32.65 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=26.6
Q ss_pred CeEEEE--EEeecccccc-cCCCCchhchhccCCcchhhhhh
Q 033159 15 NKWFYM--QVYDVSSFMD-DHPGGDEVLISATGKDATNDFED 53 (126)
Q Consensus 15 ~~Wvii--~VYDvT~f~~-~HPGG~~iL~~~aGkDaT~~F~~ 53 (126)
+..+.| .||||+.=.. .-||+. -..+||||||.+|-.
T Consensus 78 piyLaiLGsVfdVs~gk~hYgsG~s--YnhFaGRDASrAFvs 117 (281)
T KOG1108|consen 78 PIYLAILGSVFDVSRGKKHYGSGCS--YNHFAGRDASRAFVS 117 (281)
T ss_pred ceeeeeeceeeeccCCeeeeCCCCC--cccccccccchheec
Confidence 456666 9999986542 235554 467999999999854
No 13
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=62.02 E-value=2 Score=36.74 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=34.2
Q ss_pred cCCCeEEEEEEeecccccccCCCCchhchhccCCcchhhhhhcCCCH
Q 033159 12 LEKNKWFYMQVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSD 58 (126)
Q Consensus 12 ~~~~~Wvii~VYDvT~f~~~HPGG~~iL~~~aGkDaT~~F~~~~Hs~ 58 (126)
+.++.++.|--+|+..|++.||.|..++....||+..=.+- .|+.
T Consensus 365 s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm--~h~d 409 (429)
T cd00256 365 SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLL--NHED 409 (429)
T ss_pred CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHh--cCCC
Confidence 34566777777999999999999999999999886533332 3554
No 14
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=61.18 E-value=0.72 Score=32.84 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=23.8
Q ss_pred EEeecccccccCCCCchhchhccCCcchhh
Q 033159 21 QVYDVSSFMDDHPGGDEVLISATGKDATND 50 (126)
Q Consensus 21 ~VYDvT~f~~~HPGG~~iL~~~aGkDaT~~ 50 (126)
-.+|+..|++.||.|..++....+|+.-=.
T Consensus 64 ac~Dig~~vr~~p~gr~ii~~lg~K~~vM~ 93 (119)
T PF11698_consen 64 ACHDIGEFVRHYPNGRNIIEKLGAKERVME 93 (119)
T ss_dssp HHHHHHHHHHH-GGGHHHHHHHSHHHHHHH
T ss_pred hhcchHHHHHHChhHHHHHHhcChHHHHHH
Confidence 358999999999999999988888764433
No 15
>PF10529 Hist_rich_Ca-bd: Histidine-rich Calcium-binding repeat region; InterPro: IPR019552 This entry represents a histidine-rich calcium-binding repeat which appears in proteins called histidine-rich-calcium binding proteins (HRC). HRC is a high capacity, low affinity Ca2+-binding protein, residing in the lumen of the sarcoplasmic reticulum. HRC binds directly to triadin. This binding interaction occurs between the histidine-rich region of HRC and multiple clusters of charged amino acids, named KEKE motifs, in the lumenal domain of triadin. This repeat is found in the acidic region of the protein, which can be long and variable. There is also a cysteine-rich region further towards the C terminus []. HRC may regulate sarcoplasmic reticular calcium transport, play a critical role in maintaining calcium homeostasis, and function in the heart. HRC is a candidate regulator of sarcoplasmic reticular calcium uptake.
Probab=55.79 E-value=4.9 Score=18.58 Aligned_cols=11 Identities=27% Similarity=0.226 Sum_probs=8.9
Q ss_pred eeecccccCCC
Q 033159 5 HCHFALVLEKN 15 (126)
Q Consensus 5 ~~~~~H~~~~~ 15 (126)
|||..|...+|
T Consensus 1 HRhrgH~~eeD 11 (15)
T PF10529_consen 1 HRHRGHREEED 11 (15)
T ss_pred CccCccccccc
Confidence 88999887765
No 16
>PHA02819 hypothetical protein; Provisional
Probab=53.80 E-value=40 Score=21.93 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhc
Q 033159 110 LLILGLAFAVRHYTK 124 (126)
Q Consensus 110 ~~~~~~a~~~~~~~~ 124 (126)
++++.+++..++|+|
T Consensus 54 ~~~~~~~~~~flYLK 68 (71)
T PHA02819 54 VTIVFVIIFIIFYLK 68 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555666667765
No 17
>PHA03054 IMV membrane protein; Provisional
Probab=52.25 E-value=50 Score=21.52 Aligned_cols=15 Identities=27% Similarity=0.447 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhc
Q 033159 110 LLILGLAFAVRHYTK 124 (126)
Q Consensus 110 ~~~~~~a~~~~~~~~ 124 (126)
++++.+++..++|+|
T Consensus 56 ~~v~~~~l~~flYLK 70 (72)
T PHA03054 56 FIVLILLLLIYLYLK 70 (72)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334555666677765
No 18
>PHA02844 putative transmembrane protein; Provisional
Probab=51.84 E-value=43 Score=21.98 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhc
Q 033159 112 ILGLAFAVRHYTK 124 (126)
Q Consensus 112 ~~~~a~~~~~~~~ 124 (126)
++.+++..++|+|
T Consensus 58 v~~~~~~~flYLK 70 (75)
T PHA02844 58 VVFATFLTFLYLK 70 (75)
T ss_pred HHHHHHHHHHHHh
Confidence 4555566667764
No 19
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=51.10 E-value=12 Score=25.67 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=9.0
Q ss_pred EEeecccccc
Q 033159 21 QVYDVSSFMD 30 (126)
Q Consensus 21 ~VYDvT~f~~ 30 (126)
+|||+|+|..
T Consensus 64 ~VyDiTeWA~ 73 (94)
T PF14901_consen 64 KVYDITEWAT 73 (94)
T ss_pred eEEehhhhhh
Confidence 9999999974
No 20
>PHA02650 hypothetical protein; Provisional
Probab=44.76 E-value=62 Score=21.55 Aligned_cols=15 Identities=13% Similarity=0.013 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhhc
Q 033159 110 LLILGLAFAVRHYTK 124 (126)
Q Consensus 110 ~~~~~~a~~~~~~~~ 124 (126)
++++.+++..++|+|
T Consensus 57 ~~v~i~~l~~flYLK 71 (81)
T PHA02650 57 FSLIIVALFSFFVFK 71 (81)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555666666664
No 21
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=44.30 E-value=5.6 Score=34.13 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=34.7
Q ss_pred cCCCeEEEEEEeecccccccCCCCchhchhccCCcchhhhhhcCCCH
Q 033159 12 LEKNKWFYMQVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSD 58 (126)
Q Consensus 12 ~~~~~Wvii~VYDvT~f~~~HPGG~~iL~~~aGkDaT~~F~~~~Hs~ 58 (126)
+.++.|+.+--.|+++|++.+|-|..++..+.||.. .++-.+|+.
T Consensus 378 s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~--vM~Llnh~d 422 (442)
T KOG2759|consen 378 SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKER--VMNLLNHED 422 (442)
T ss_pred CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHH--HHHHhcCCC
Confidence 345678777889999999999999999999999843 233334554
No 22
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.62 E-value=9.7 Score=31.72 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=14.2
Q ss_pred ecccccccCCCCchhchhccC
Q 033159 24 DVSSFMDDHPGGDEVLISATG 44 (126)
Q Consensus 24 DvT~f~~~HPGG~~iL~~~aG 44 (126)
|+.-|+ -||||.++|..+.+
T Consensus 270 dI~~w~-~HPGG~KVida~~~ 289 (356)
T COG3424 270 DIEAWV-VHPGGPKVIDAYEE 289 (356)
T ss_pred hhceee-eCCCCchHHHHHHH
Confidence 344444 59999999988764
No 23
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=39.63 E-value=30 Score=21.67 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033159 104 LQILVPLLILGLAFAVRH 121 (126)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~ 121 (126)
.++++|+.|+++++++..
T Consensus 4 l~~Lipvsi~l~~v~l~~ 21 (58)
T COG3197 4 LYILIPVSILLGAVGLGA 21 (58)
T ss_pred eeeHHHHHHHHHHHHHHH
Confidence 356888877666555543
No 24
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=34.32 E-value=72 Score=19.32 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 033159 104 LQILVPLLILGLAFAV 119 (126)
Q Consensus 104 ~~~~~~~~~~~~a~~~ 119 (126)
.++++|+.++.+++++
T Consensus 4 l~~LIpiSl~l~~~~l 19 (51)
T TIGR00847 4 LTILIPISLLLGGVGL 19 (51)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678887665444443
No 25
>PHA02975 hypothetical protein; Provisional
Probab=33.04 E-value=1.1e+02 Score=19.80 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhc
Q 033159 111 LILGLAFAVRHYTK 124 (126)
Q Consensus 111 ~~~~~a~~~~~~~~ 124 (126)
+++.+++..++|+|
T Consensus 53 ~v~~~~~~~flYLK 66 (69)
T PHA02975 53 FITCIAVFTFLYLK 66 (69)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555666667664
No 26
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=32.84 E-value=72 Score=18.74 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 033159 104 LQILVPLLILGLAFA 118 (126)
Q Consensus 104 ~~~~~~~~~~~~a~~ 118 (126)
.++++|+.++.++.+
T Consensus 3 l~~lip~sl~l~~~~ 17 (45)
T PF03597_consen 3 LYILIPVSLILGLIA 17 (45)
T ss_pred hhHHHHHHHHHHHHH
Confidence 356788666444333
No 27
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=32.14 E-value=1.5e+02 Score=19.95 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 033159 107 LVPLLILGLAFAVRHYTK 124 (126)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~ 124 (126)
++.+.++++....-||+.
T Consensus 37 m~~lmllGL~WiVvyYi~ 54 (87)
T PF06781_consen 37 MLGLMLLGLLWIVVYYIS 54 (87)
T ss_pred HHHHHHHHHHHHhhhhcc
Confidence 344445555544445554
No 28
>PRK14758 hypothetical protein; Provisional
Probab=31.52 E-value=87 Score=16.54 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 033159 104 LQILVPLLILGLAFAVRHYT 123 (126)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~ 123 (126)
+.+++.++|+..-++..+|+
T Consensus 7 FEliLivlIlCalia~~fy~ 26 (27)
T PRK14758 7 FEFILIILILCALIAARFYL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45555566655556666665
No 29
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=30.34 E-value=83 Score=26.68 Aligned_cols=16 Identities=6% Similarity=-0.106 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 033159 108 VPLLILGLAFAVRHYT 123 (126)
Q Consensus 108 ~~~~~~~~a~~~~~~~ 123 (126)
+.++++++|.++|||.
T Consensus 43 aili~la~g~g~y~~~ 58 (390)
T PRK10920 43 AIAIALAAGAGLYYHG 58 (390)
T ss_pred HHHHHHHHhhHHHHHH
Confidence 3344456665666664
No 30
>PHA03029 hypothetical protein; Provisional
Probab=30.26 E-value=85 Score=20.86 Aligned_cols=27 Identities=11% Similarity=0.306 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HHHhhcC
Q 033159 99 FIIKILQILVPLLILGLAFA--VRHYTKK 125 (126)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~~--~~~~~~~ 125 (126)
.+.++..|++|+.+++.-++ .++.|..
T Consensus 54 wflnf~fwllp~al~a~fyffsiw~imnp 82 (92)
T PHA03029 54 WFLNFLFWLLPFALAAAFYFFSIWFIMNP 82 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 34566678899887655322 4455543
No 31
>PHA02692 hypothetical protein; Provisional
Probab=29.48 E-value=1.3e+02 Score=19.50 Aligned_cols=13 Identities=23% Similarity=0.066 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhc
Q 033159 112 ILGLAFAVRHYTK 124 (126)
Q Consensus 112 ~~~~a~~~~~~~~ 124 (126)
++.+++..++|+|
T Consensus 56 ~~~~vll~flYLK 68 (70)
T PHA02692 56 AAIGVLLCFHYLK 68 (70)
T ss_pred HHHHHHHHHHHHh
Confidence 3455556666664
No 32
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=28.95 E-value=19 Score=26.33 Aligned_cols=16 Identities=38% Similarity=0.727 Sum_probs=11.5
Q ss_pred ccccCCCCchhchhcc
Q 033159 28 FMDDHPGGDEVLISAT 43 (126)
Q Consensus 28 f~~~HPGG~~iL~~~a 43 (126)
|..-||||.++|....
T Consensus 62 ~wavHPGG~~ILd~v~ 77 (151)
T PF02797_consen 62 FWAVHPGGRKILDAVE 77 (151)
T ss_dssp EEEEE-SSHHHHHHHH
T ss_pred eeeecCChHHHHHHHH
Confidence 3456999999988765
No 33
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=28.67 E-value=1.8e+02 Score=24.12 Aligned_cols=10 Identities=20% Similarity=0.142 Sum_probs=5.6
Q ss_pred HHHHHHHHHh
Q 033159 113 LGLAFAVRHY 122 (126)
Q Consensus 113 ~~~a~~~~~~ 122 (126)
+++|.++|+|
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 4555556655
No 34
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=28.41 E-value=1.2e+02 Score=19.80 Aligned_cols=23 Identities=35% Similarity=0.714 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 033159 98 EFIIKILQILVPLLILGLAFAVR 120 (126)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~a~~~~ 120 (126)
++.++++-.+.|++|+.+.++.+
T Consensus 21 ~Fl~~vll~LtPlfiisa~lSwk 43 (74)
T PF15086_consen 21 EFLTTVLLILTPLFIISAVLSWK 43 (74)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566677788888877766554
No 35
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=27.60 E-value=93 Score=23.13 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 033159 97 PEFIIKILQILVPLLILGLAFAVR 120 (126)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~a~~~~ 120 (126)
+-.+.++.-|..|++++++|..+.
T Consensus 100 p~~~~T~lLW~~Pv~llllG~~~~ 123 (153)
T COG3088 100 PLTGQTLLLWGLPVVLLLLGGVLL 123 (153)
T ss_pred CCchhHHHHHHhHHHHHHHHHHHH
Confidence 335567778999988777665544
No 36
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=27.27 E-value=84 Score=22.56 Aligned_cols=19 Identities=42% Similarity=0.670 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033159 102 KILQILVPLLILGLAFAVR 120 (126)
Q Consensus 102 ~~~~~~~~~~~~~~a~~~~ 120 (126)
++.-|+.|+++++++.++.
T Consensus 101 t~~LW~~P~lll~~G~~~~ 119 (126)
T TIGR03147 101 TLLLWLLPVLLLLLAFVLL 119 (126)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4556899988877665543
No 37
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=26.65 E-value=1.4e+02 Score=25.62 Aligned_cols=19 Identities=5% Similarity=0.371 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 033159 107 LVPLLILGLAFAVRHYTKK 125 (126)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~ 125 (126)
++.++++++++..|+|+..
T Consensus 38 Vl~iIii~~~~~~Y~~~~~ 56 (416)
T PF04415_consen 38 VLIIIIIFIVYNIYYFLQN 56 (416)
T ss_pred hHhHHHHHHHHHHHHHhhh
Confidence 3445566778888877753
No 38
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=26.43 E-value=76 Score=24.72 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhhc
Q 033159 110 LLILGLAFAVRHYTK 124 (126)
Q Consensus 110 ~~~~~~a~~~~~~~~ 124 (126)
++++++|-++++|++
T Consensus 167 llv~l~gGGa~yYfK 181 (218)
T PF14283_consen 167 LLVALIGGGAYYYFK 181 (218)
T ss_pred HHHHHhhcceEEEEE
Confidence 333334335555554
No 39
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=24.55 E-value=14 Score=24.26 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=17.3
Q ss_pred EEeecccccccCCCCchhchhc
Q 033159 21 QVYDVSSFMDDHPGGDEVLISA 42 (126)
Q Consensus 21 ~VYDvT~f~~~HPGG~~iL~~~ 42 (126)
.|.|++=|++.||.-.+.|..+
T Consensus 14 a~~dl~LyLDTHP~d~~Al~~y 35 (78)
T PF12652_consen 14 AVVDLNLYLDTHPDDQEALEYY 35 (78)
T ss_pred HHHHHHHHhcCCCCcHHHHHHH
Confidence 4678899999999988766544
No 40
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=23.91 E-value=2.4e+02 Score=19.03 Aligned_cols=17 Identities=35% Similarity=0.720 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhhc
Q 033159 108 VPLLILGLAFAVRHYTK 124 (126)
Q Consensus 108 ~~~~~~~~a~~~~~~~~ 124 (126)
+-+.++++...+-||+.
T Consensus 38 ~glm~~GllWlvvyYl~ 54 (87)
T PRK00159 38 LGLMLIGLAWLVVNYLA 54 (87)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33445555555556654
No 41
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=23.74 E-value=16 Score=21.59 Aligned_cols=15 Identities=20% Similarity=0.758 Sum_probs=11.1
Q ss_pred EEeecccccccCCCC
Q 033159 21 QVYDVSSFMDDHPGG 35 (126)
Q Consensus 21 ~VYDvT~f~~~HPGG 35 (126)
+.=|++.|+..|||=
T Consensus 26 ~~~~L~~WL~~~P~y 40 (46)
T PF07533_consen 26 KLKELEEWLEEHPGY 40 (46)
T ss_dssp BCCCHHHHHHH-TTE
T ss_pred CHHHHHHHHHHCcCc
Confidence 456888999999983
No 42
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=22.32 E-value=2e+02 Score=17.68 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 033159 96 TPEFIIKILQILVPLLI-LGLAFAVRHYTK 124 (126)
Q Consensus 96 ~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~ 124 (126)
++++|-.....++..++ +.+|+++.+..+
T Consensus 19 ~NsF~fViik~vismimylilGi~L~yis~ 48 (54)
T PF04835_consen 19 PNSFWFVIIKSVISMIMYLILGIALIYISS 48 (54)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45555433333333332 445555555543
No 43
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=20.17 E-value=1.3e+02 Score=24.60 Aligned_cols=20 Identities=40% Similarity=0.484 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 033159 105 QILVPLLILGLAFAVRHYTK 124 (126)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~ 124 (126)
-+++|++++++++.+|+|+-
T Consensus 204 li~~Pl~li~la~~GY~yTA 223 (340)
T PF12794_consen 204 LILAPLALIVLALLGYYYTA 223 (340)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 36788888888889998863
No 44
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=20.09 E-value=2.6e+02 Score=18.16 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhc
Q 033159 113 LGLAFAVRHYTK 124 (126)
Q Consensus 113 ~~~a~~~~~~~~ 124 (126)
+.+.+...+|++
T Consensus 59 ~ii~~l~flYLK 70 (72)
T PF12575_consen 59 LIIVLLTFLYLK 70 (72)
T ss_pred HHHHHHHHHHhc
Confidence 334444566664
Done!