BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033160
MILDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHK
HGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHMPPP
PPTPPI

High Scoring Gene Products

Symbol, full name Information P value
TOM20-3
AT3G27080
protein from Arabidopsis thaliana 2.4e-24
TOM20-2
AT1G27390
protein from Arabidopsis thaliana 1.2e-19
TOM20-4
AT5G40930
protein from Arabidopsis thaliana 1.3e-13

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033160
        (126 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2092045 - symbol:TOM20-3 "AT3G27080" species:3...   246  2.4e-24   2
TAIR|locus:2015904 - symbol:TOM20-2 "AT1G27390" species:3...   234  1.2e-19   1
TAIR|locus:2167737 - symbol:TOM20-4 "AT5G40930" species:3...   177  1.3e-13   1


>TAIR|locus:2092045 [details] [associations]
            symbol:TOM20-3 "AT3G27080" species:3702 "Arabidopsis
            thaliana" [GO:0005739 "mitochondrion" evidence=IEA;IDA] [GO:0045040
            "protein import into mitochondrial outer membrane" evidence=IEA]
            [GO:0005742 "mitochondrial outer membrane translocase complex"
            evidence=IDA] [GO:0005744 "mitochondrial inner membrane presequence
            translocase complex" evidence=TAS] [GO:0006626 "protein targeting
            to mitochondrion" evidence=RCA;IMP;TAS] [GO:0015450
            "P-P-bond-hydrolysis-driven protein transmembrane transporter
            activity" evidence=IDA;TAS] [GO:0005741 "mitochondrial outer
            membrane" evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
            [GO:0051788 "response to misfolded protein" evidence=RCA]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA]
            InterPro:IPR010547 InterPro:IPR011990 Pfam:PF06552 PROSITE:PS50005
            PROSITE:PS50293 GO:GO:0016021 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006626 Gene3D:1.25.40.10
            GO:GO:0005744 EMBL:AB026649 GO:GO:0045040 GO:GO:0005742
            GO:GO:0015450 eggNOG:NOG240270 HOGENOM:HOG000005870
            ProtClustDB:CLSN2684989 EMBL:AJ296025 EMBL:AY040027 EMBL:AY079411
            EMBL:AY087037 IPI:IPI00528881 RefSeq:NP_189344.1 UniGene:At.6114
            PDB:1ZU2 PDBsum:1ZU2 ProteinModelPortal:P82874 SMR:P82874
            IntAct:P82874 STRING:P82874 PaxDb:P82874 PRIDE:P82874
            EnsemblPlants:AT3G27080.1 GeneID:822326 KEGG:ath:AT3G27080
            GeneFarm:2106 TAIR:At3g27080 InParanoid:P82874 OMA:WISFAKA
            PhylomeDB:P82874 EvolutionaryTrace:P82874 Genevestigator:P82874
            GermOnline:AT3G27080 Uniprot:P82874
        Length = 202

 Score = 246 (91.7 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 50/102 (49%), Positives = 62/102 (60%)

Query:    16 EAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXX 75
             EAK  F+ AT +FQQAVDE+P N  Y KSLE+ AKAP+LH E +K GLG Q M       
Sbjct:    97 EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPA 156

Query:    76 XXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKSHM 117
                            D KYD  GWVILA+G+VAW+ FAK+++
Sbjct:   157 PPSSKAVKNKKSS--DAKYDAMGWVILAIGVVAWISFAKANV 196

 Score = 47 (21.6 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query:     1 MILDAISKLEEALMDEAKE 19
             MI +AI+K EEAL+ + K+
Sbjct:    56 MIQEAITKFEEALLIDPKK 74


>TAIR|locus:2015904 [details] [associations]
            symbol:TOM20-2 "AT1G27390" species:3702 "Arabidopsis
            thaliana" [GO:0005739 "mitochondrion" evidence=ISM;IEA;IDA]
            [GO:0045040 "protein import into mitochondrial outer membrane"
            evidence=IEA] [GO:0005742 "mitochondrial outer membrane translocase
            complex" evidence=IDA] [GO:0005744 "mitochondrial inner membrane
            presequence translocase complex" evidence=TAS] [GO:0006626 "protein
            targeting to mitochondrion" evidence=RCA;IMP;TAS] [GO:0015450
            "P-P-bond-hydrolysis-driven protein transmembrane transporter
            activity" evidence=TAS] [GO:0046872 "metal ion binding"
            evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
            evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
            evidence=IDA] [GO:0022626 "cytosolic ribosome" evidence=IDA]
            [GO:0005829 "cytosol" evidence=RCA] InterPro:IPR010547
            InterPro:IPR011990 Pfam:PF06552 PROSITE:PS50005 PROSITE:PS50293
            GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006626
            GO:GO:0046872 Gene3D:1.25.40.10 GO:GO:0005744 EMBL:AC004557
            GO:GO:0022626 GO:GO:0045040 GO:GO:0005742 GO:GO:0015450
            EMBL:AJ296024 EMBL:AK228213 EMBL:BT024602 IPI:IPI00520696
            PIR:D86399 RefSeq:NP_174059.2 UniGene:At.10325 UniGene:At.71052
            ProteinModelPortal:P82873 SMR:P82873 IntAct:P82873
            MINT:MINT-4330409 STRING:P82873 PaxDb:P82873 PRIDE:P82873
            EnsemblPlants:AT1G27390.1 GeneID:839629 KEGG:ath:AT1G27390
            GeneFarm:2097 TAIR:At1g27390 eggNOG:NOG240270 HOGENOM:HOG000005870
            InParanoid:P82873 OMA:WIGMAKS PhylomeDB:P82873
            ProtClustDB:CLSN2684989 Genevestigator:P82873 GermOnline:AT1G27390
            Uniprot:P82873
        Length = 210

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 47/106 (44%), Positives = 63/106 (59%)

Query:    15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXX 74
             +EAKE+F+KAT YFQ+A +E+P N+ Y+KSL+ + KAPELHM+    G+GQQ +      
Sbjct:    97 EEAKEHFDKATEYFQRAENEDPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGG 156

Query:    75 XXXXXXXXXXXXXXX-----XDLKYDIFGWVILAVGIVAWVGFAKS 115
                                  +  YD+ GW+ILA GIVAWVG AKS
Sbjct:   157 GGGGMASSNVSQSSKKKKRNTEFTYDVCGWIILACGIVAWVGMAKS 202


>TAIR|locus:2167737 [details] [associations]
            symbol:TOM20-4 "AT5G40930" species:3702 "Arabidopsis
            thaliana" [GO:0005739 "mitochondrion" evidence=ISM;IEA] [GO:0005742
            "mitochondrial outer membrane translocase complex" evidence=IDA]
            [GO:0005744 "mitochondrial inner membrane presequence translocase
            complex" evidence=TAS] [GO:0006626 "protein targeting to
            mitochondrion" evidence=RCA;IMP;TAS] [GO:0015450
            "P-P-bond-hydrolysis-driven protein transmembrane transporter
            activity" evidence=TAS] [GO:0005774 "vacuolar membrane"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0000278 "mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA
            processing" evidence=RCA] InterPro:IPR010547 InterPro:IPR011990
            Pfam:PF06552 PROSITE:PS50005 PROSITE:PS50293 GO:GO:0016021
            GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006626
            Gene3D:1.25.40.10 GO:GO:0005744 EMBL:AB023040 GO:GO:0045040
            GO:GO:0005742 GO:GO:0015450 HOGENOM:HOG000005870
            ProtClustDB:CLSN2684989 EMBL:AF462861 EMBL:AY141998 EMBL:AK117822
            IPI:IPI00540141 RefSeq:NP_198909.1 UniGene:At.28254
            ProteinModelPortal:P82805 SMR:P82805 IntAct:P82805 STRING:P82805
            PaxDb:P82805 PRIDE:P82805 EnsemblPlants:AT5G40930.1 GeneID:834094
            KEGG:ath:AT5G40930 GeneFarm:2107 TAIR:At5g40930 eggNOG:NOG289162
            InParanoid:P82805 OMA:KKHDALW PhylomeDB:P82805
            Genevestigator:P82805 GermOnline:AT5G40930 Uniprot:P82805
        Length = 187

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 40/100 (40%), Positives = 53/100 (53%)

Query:    16 EAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXX 75
             EA + F KA+ +FQ AV+E+P +ELY+KSL +A+KAPELH                    
Sbjct:    95 EASDNFEKASQFFQLAVEEQPESELYRKSLTLASKAPELH--------------TGGTAG 140

Query:    76 XXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKS 115
                            + KYD+FGWVILA  +VAW+ FA S
Sbjct:   141 PSSNSAKTMKQKKTSEFKYDVFGWVILASYVVAWISFANS 180


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126        96   0.00091  102 3  11 22  0.36    30
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  109 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.06u 0.12s 10.18t   Elapsed:  00:00:01
  Total cpu time:  10.06u 0.12s 10.18t   Elapsed:  00:00:01
  Start:  Fri May 10 16:27:04 2013   End:  Fri May 10 16:27:05 2013

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