BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033160
         (126 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZU2|A Chain A, Solution Nmr Structure Of The Plant Tom20 Mitochondrial
           Import Receptor From Arabidopsis Thaliana
          Length = 158

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 49/90 (54%), Gaps = 26/90 (28%)

Query: 1   MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
           MI +AI+K EEAL+                           EAK  F+ AT +FQQAVDE
Sbjct: 61  MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLG 64
           +P N  Y KSLE+ AKAP+LH E +K GLG
Sbjct: 121 QPDNTHYLKSLEMTAKAPQLHAEAYKQGLG 150


>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
          Length = 166

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 4  DAISKLEEALMDEAKEYFN-----KATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEI 58
          D   K  E L  +A +YF       A  ++ QA++  PSN +Y  +  +A     L  E 
Sbjct: 7  DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAY----LRTEC 62

Query: 59 HKHGLGQQT 67
          + + LG  T
Sbjct: 63 YGYALGDAT 71


>pdb|1WAO|1 Chain 1, Pp5 Structure
 pdb|1WAO|2 Chain 2, Pp5 Structure
 pdb|1WAO|3 Chain 3, Pp5 Structure
 pdb|1WAO|4 Chain 4, Pp5 Structure
          Length = 477

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 8  KLEEALMDEAKEYFN-----KATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHG 62
          K  E L  +A +YF       A  ++ QA++  PSN +Y  +  +A     L  E + + 
Sbjct: 4  KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAY----LRTECYGYA 59

Query: 63 LGQQT 67
          LG  T
Sbjct: 60 LGDAT 64


>pdb|1Z1N|X Chain X, Crystal Structure Of The Sixteen Heme Cytochrome From
           Desulfovibrio Gigas
          Length = 560

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 12/55 (21%)

Query: 8   KLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHG 62
           KL    MDE  + +  A         E P  ++YQK +E AAK+P   M  H HG
Sbjct: 444 KLTLNYMDEKGDEWQAA---------EFPHRKIYQKLVEEAAKSP---MANHFHG 486


>pdb|3G9K|S Chain S, Crystal Structure Of Bacillus Anthracis Transpeptidase
           Enzyme Capd
 pdb|3G9K|F Chain F, Crystal Structure Of Bacillus Anthracis Transpeptidase
           Enzyme Capd
 pdb|3GA9|S Chain S, Crystal Structure Of Bacillus Anthracis Transpeptidase
           Enzyme Capd, Crystal Form Ii
          Length = 177

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 2   ILDAISKLEEALMDEAKEY---FNKATLYFQQAVDEEPSNELYQKSLEVAAK 50
           ILD  +  + +L D   EY   F K T Y +  +  E  NEL +K L V  K
Sbjct: 89  ILDKYTHGKGSLQDIINEYRFTFEKNTAYTEIQLSSEVKNELSRKGLNVKKK 140


>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
          Phosphatase 5 In Complex With Hsp90 Derived Peptide
          Length = 140

 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 4  DAISKLEEALMDEAKEYFN-----KATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEI 58
          D   K  E L  +A +YF       A  ++ QA++  PSN +Y  +  +A     L  E 
Sbjct: 15 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAY----LRTEC 70

Query: 59 HKHGLGQQT 67
          + + L   T
Sbjct: 71 YGYALNDAT 79


>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
 pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
          Length = 131

 Score = 26.2 bits (56), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 20/26 (76%)

Query: 23  KATLYFQQAVDEEPSNELYQKSLEVA 48
           +A  Y+++A++ +P NE Y+ +L++A
Sbjct: 98  EAVAYYKKALELDPDNETYKSNLKIA 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,687,220
Number of Sequences: 62578
Number of extensions: 68768
Number of successful extensions: 231
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 9
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)