BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033160
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P92792|TOM20_SOLTU Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum
GN=TOM20 PE=1 SV=1
Length = 204
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/143 (62%), Positives = 97/143 (67%), Gaps = 29/143 (20%)
Query: 1 MILDAISKLEEAL--------------------------MDEAKEYFNKATLYFQQAVDE 34
MI DA SKLEEAL MDEAK YF KAT FQQA D
Sbjct: 56 MISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDA 115
Query: 35 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
+PSN+LY+KSLEV AKAPELHMEIH+HG QQTM A STS+ K+SKK KSSDLKY
Sbjct: 116 DPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTMAAE---PSTSTSTKSSKKTKSSDLKY 172
Query: 95 DIFGWVILAVGIVAWVGFAKSHM 117
DIFGWVILAVGIVAWVGFAKS+M
Sbjct: 173 DIFGWVILAVGIVAWVGFAKSNM 195
>sp|P82874|TO203_ARATH Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis
thaliana GN=TOM20-3 PE=1 SV=1
Length = 202
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 88/148 (59%), Gaps = 28/148 (18%)
Query: 1 MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
MI +AI+K EEAL+ EAK F+ AT +FQQAVDE
Sbjct: 56 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115
Query: 35 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
+P N Y KSLE+ AKAP+LH E +K GLG Q MG P+ SS K K KKSSD KY
Sbjct: 116 QPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSS--KAVKNKKSSDAKY 173
Query: 95 DIFGWVILAVGIVAWVGFAKSHMPPPPP 122
D GWVILA+G+VAW+ FAK+++P PP
Sbjct: 174 DAMGWVILAIGVVAWISFAKANVPVSPP 201
>sp|P82873|TO202_ARATH Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis
thaliana GN=TOM20-2 PE=1 SV=2
Length = 210
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 92/152 (60%), Gaps = 31/152 (20%)
Query: 1 MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
M+ DAISKLEEAL +EAKE+F+KAT YFQ+A +E
Sbjct: 57 MLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENE 116
Query: 35 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGP-----SSTSSGAKTSKKKKS 89
+P N+ Y+KSL+ + KAPELHM+ G+GQQ +G G +S++ + KKK++
Sbjct: 117 DPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRN 176
Query: 90 SDLKYDIFGWVILAVGIVAWVGFAKSHMPPPP 121
++ YD+ GW+ILA GIVAWVG AKS PPPP
Sbjct: 177 TEFTYDVCGWIILACGIVAWVGMAKSLGPPPP 208
>sp|Q5JJI4|TOM20_ORYSJ Probable mitochondrial import receptor subunit TOM20 OS=Oryza
sativa subsp. japonica GN=TOM20 PE=2 SV=1
Length = 202
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 79/107 (73%), Gaps = 4/107 (3%)
Query: 16 EAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPS 75
+A E+F KAT FQ+AVD EP+N+LY+KSL++++KAPELHMEIH+ Q AS S
Sbjct: 99 KANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHR----QMASQASQAAS 154
Query: 76 STSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHMPPPPP 122
STS+ ++ KKKK SD YD+FGWV+L VG+V WVG AKS+ PP P
Sbjct: 155 STSNTRQSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAP 201
>sp|A2WYG9|TOM20_ORYSI Probable mitochondrial import receptor subunit TOM20 OS=Oryza
sativa subsp. indica GN=TOM20 PE=2 SV=2
Length = 201
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 79/107 (73%), Gaps = 5/107 (4%)
Query: 16 EAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPS 75
+A E+F KAT FQ+AVD EP+N+LY+KSL++++KAPELHMEIH+ Q ++ +
Sbjct: 99 KANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHR-----QMASQASQAA 153
Query: 76 STSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHMPPPPP 122
S++S + S+KKK SD YD+FGWV+L VG+V WVG AKS+ PP P
Sbjct: 154 SSTSNTRQSRKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAP 200
>sp|P82805|TO204_ARATH Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis
thaliana GN=TOM20-4 PE=1 SV=1
Length = 187
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 82/144 (56%), Gaps = 40/144 (27%)
Query: 1 MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
MIL+AI KL EAL+ EA + F KA+ +FQ AV+E
Sbjct: 54 MILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEE 113
Query: 35 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
+P +ELY+KSL +A+KAPELH G + GPSS S AKT K+KK+S+ KY
Sbjct: 114 QPESELYRKSLTLASKAPELHT------------GGTAGPSSNS--AKTMKQKKTSEFKY 159
Query: 95 DIFGWVILAVGIVAWVGFAKSHMP 118
D+FGWVILA +VAW+ FA S P
Sbjct: 160 DVFGWVILASYVVAWISFANSQTP 183
>sp|P82872|TO201_ARATH Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis
thaliana GN=TOM20-1 PE=1 SV=1
Length = 188
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 73/140 (52%), Gaps = 29/140 (20%)
Query: 1 MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
MI DAISKLE+A++ +A+ F A L+F AV +
Sbjct: 50 MIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQ 109
Query: 35 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
+P N++Y KSLE+A KAP+LH HK+ L G T + K K KKSSD KY
Sbjct: 110 QPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETLAIPSP---KVVKNKKSSDEKY 166
Query: 95 DIFGWVILAVGIVAWVGFAK 114
+ GWVILA+G+VA + F K
Sbjct: 167 IVMGWVILAIGVVACISFRK 186
>sp|A1WX31|DNAK_HALHL Chaperone protein DnaK OS=Halorhodospira halophila (strain DSM 244
/ SL1) GN=dnaK PE=3 SV=1
Length = 647
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 5 AISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLG 64
++S L E + D K+ A +Q D E + + QK+ E+A KA EL + ++ G
Sbjct: 549 SLSDLGEQVGDAEKQEIESAISELEQVKDGEDKDAIEQKTQELATKAGELAQKAYQQAGG 608
Query: 65 QQTMGASTGPSSTSSG 80
A G T+SG
Sbjct: 609 GDEASADAGAGETASG 624
>sp|B9FM64|UFL1_ORYSJ E3 UFM1-protein ligase 1 homolog OS=Oryza sativa subsp. japonica
GN=Os05g0117600 PE=3 SV=1
Length = 812
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 1 MILDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSN-ELYQKSLEVAAKAPELHMEIH 59
M++DA K ++ E E + Q+ +DE + +LY+KSL+V P +H
Sbjct: 534 MLMDAWMKKRNTMLSENAERRRRLLDNLQKQLDEAVLDMQLYEKSLDVFEDDPATSAILH 593
Query: 60 KHGLGQQTMGA 70
KH L +TMGA
Sbjct: 594 KHLL--RTMGA 602
>sp|B8AXB6|UFL1_ORYSI E3 UFM1-protein ligase 1 homolog OS=Oryza sativa subsp. indica
GN=OsI_18219 PE=3 SV=1
Length = 812
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 1 MILDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSN-ELYQKSLEVAAKAPELHMEIH 59
M++DA K ++ E E + Q+ +DE + +LY+KSL+V P +H
Sbjct: 534 MLMDAWMKKRNTMLSENAERRRRLLDNLQKQLDEAVLDMQLYEKSLDVFEDDPATSAILH 593
Query: 60 KHGLGQQTMGA 70
KH L +TMGA
Sbjct: 594 KHLL--RTMGA 602
>sp|Q9QYM7|XPF_CRIGR DNA repair endonuclease XPF OS=Cricetulus griseus GN=ERCC4 PE=2
SV=3
Length = 913
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 40 LYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLK 93
LY+K+ E +KA E+ + + K ++TM + P T + + S KK + K
Sbjct: 432 LYRKTFEKDSKAEEVWVNLRKGDGPKRTMKSDKRPKDTKNKERASTKKGAPKRK 485
>sp|Q8BJD1|ITIH5_MOUSE Inter-alpha-trypsin inhibitor heavy chain H5 OS=Mus musculus
GN=Itih5 PE=2 SV=1
Length = 952
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 28 FQQAVDEEPSNELYQKSLEVAAK----APELHMEIHKHGLGQQT------MGASTGPSST 77
++Q+ E+ +L QK+ ++A P M++ K GL M A+TGP++
Sbjct: 589 WRQSNSEQEKEQLRQKAQDLALNYHFLTPFTSMKLRKPGLRTNQLEDTYGMSAATGPATV 648
Query: 78 SSGAKTSKKKKSSDLK--YD 95
+ + K+ DLK YD
Sbjct: 649 VQNLREAGKQPEPDLKKTYD 668
>sp|Q8C115|PKHH2_MOUSE Pleckstrin homology domain-containing family H member 2 OS=Mus
musculus GN=Plekhh2 PE=2 SV=3
Length = 1491
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 2 ILDAISKL-EEALMDEAKEYFNKATLYFQQAVDEEPSN---ELYQKSLEVAAKAPELHME 57
IL ++ L EAL EA + F L+ AVD + L Q +L+V PEL E
Sbjct: 959 ILSPLTTLPSEALQTEAIKLFKTCQLFINAAVDSPAIDYHISLAQSALQVCLTHPELQNE 1018
Query: 58 I 58
I
Sbjct: 1019 I 1019
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,196,491
Number of Sequences: 539616
Number of extensions: 1800339
Number of successful extensions: 10973
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 10892
Number of HSP's gapped (non-prelim): 107
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)