Query 033160
Match_columns 126
No_of_seqs 63 out of 65
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 10:33:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06552 TOM20_plant: Plant sp 100.0 4.7E-56 1E-60 350.7 7.0 111 1-114 50-186 (186)
2 KOG0553 TPR repeat-containing 98.5 1.7E-07 3.7E-12 79.5 5.1 49 2-50 131-194 (304)
3 PF00515 TPR_1: Tetratricopept 97.4 0.00033 7.1E-09 39.0 3.8 26 13-38 9-34 (34)
4 PF07719 TPR_2: Tetratricopept 97.2 0.00022 4.7E-09 39.1 1.7 24 15-38 11-34 (34)
5 PF13432 TPR_16: Tetratricopep 96.9 0.0013 2.9E-08 40.6 3.7 29 17-45 9-37 (65)
6 cd02678 MIT_VPS4 MIT: domain c 96.8 0.0059 1.3E-07 40.9 6.5 44 1-45 2-52 (75)
7 KOG1129 TPR repeat-containing 96.8 0.0041 8.9E-08 55.4 6.7 52 15-66 300-373 (478)
8 PF13181 TPR_8: Tetratricopept 96.7 0.0015 3.2E-08 36.1 2.5 24 15-38 11-34 (34)
9 PF14559 TPR_19: Tetratricopep 96.7 0.0029 6.3E-08 39.0 4.1 25 19-43 39-63 (68)
10 PF04212 MIT: MIT (microtubule 96.7 0.012 2.7E-07 38.2 7.0 39 1-39 1-46 (69)
11 smart00745 MIT Microtubule Int 96.7 0.015 3.3E-07 38.2 7.3 59 2-60 5-74 (77)
12 PF13414 TPR_11: TPR repeat; P 96.5 0.0063 1.4E-07 37.7 4.4 42 4-45 2-43 (69)
13 PF13414 TPR_11: TPR repeat; P 96.4 0.0091 2E-07 37.0 4.8 35 2-36 19-69 (69)
14 cd02656 MIT MIT: domain contai 96.3 0.034 7.4E-07 36.7 7.4 44 1-45 2-52 (75)
15 PRK15359 type III secretion sy 96.2 0.014 3E-07 42.4 5.4 44 2-45 40-98 (144)
16 PLN03088 SGT1, suppressor of 96.1 0.016 3.4E-07 48.3 6.1 37 3-39 19-70 (356)
17 PF13428 TPR_14: Tetratricopep 96.1 0.0059 1.3E-07 36.4 2.6 31 15-45 11-41 (44)
18 TIGR02552 LcrH_SycD type III s 96.0 0.014 3E-07 39.8 4.6 37 3-39 34-85 (135)
19 PRK02603 photosystem I assembl 96.0 0.028 6E-07 41.2 6.3 33 15-49 130-162 (172)
20 KOG4626 O-linked N-acetylgluco 95.9 0.014 3E-07 55.5 5.5 59 2-60 234-328 (966)
21 KOG1174 Anaphase-promoting com 95.9 0.018 3.9E-07 52.5 6.0 55 3-57 455-526 (564)
22 PF13371 TPR_9: Tetratricopept 95.9 0.044 9.4E-07 34.1 6.0 43 3-45 12-69 (73)
23 PRK15359 type III secretion sy 95.7 0.051 1.1E-06 39.4 6.8 45 15-59 34-99 (144)
24 cd02684 MIT_2 MIT: domain cont 95.6 0.067 1.5E-06 36.5 6.6 43 2-45 3-52 (75)
25 smart00028 TPR Tetratricopepti 95.5 0.019 4.1E-07 27.9 2.6 24 15-38 11-34 (34)
26 PRK15363 pathogenicity island 95.5 0.091 2E-06 41.0 7.7 44 15-59 79-143 (157)
27 cd02683 MIT_1 MIT: domain cont 95.4 0.13 2.7E-06 35.4 7.4 58 1-58 2-70 (77)
28 PF13432 TPR_16: Tetratricopep 95.4 0.034 7.3E-07 34.2 4.2 37 3-39 14-65 (65)
29 PRK10370 formate-dependent nit 95.3 0.036 7.8E-07 42.6 5.0 46 2-47 55-115 (198)
30 PF14559 TPR_19: Tetratricopep 95.0 0.032 7E-07 34.3 3.2 28 18-45 4-31 (68)
31 cd00189 TPR Tetratricopeptide 95.0 0.19 4.1E-06 28.8 6.2 22 18-39 47-68 (100)
32 TIGR02552 LcrH_SycD type III s 95.0 0.25 5.3E-06 33.6 7.7 28 12-39 24-51 (135)
33 CHL00033 ycf3 photosystem I as 94.8 0.1 2.2E-06 37.9 5.7 27 15-41 130-156 (168)
34 TIGR00990 3a0801s09 mitochondr 94.6 0.095 2.1E-06 45.7 6.1 37 3-39 382-433 (615)
35 PRK10747 putative protoheme IX 94.4 0.079 1.7E-06 44.2 5.0 28 15-42 338-365 (398)
36 TIGR00990 3a0801s09 mitochondr 94.3 0.17 3.7E-06 44.1 7.0 38 2-39 483-542 (615)
37 PRK11189 lipoprotein NlpI; Pro 94.2 0.09 2E-06 42.2 4.9 37 3-39 81-132 (296)
38 PLN03088 SGT1, suppressor of 94.2 0.13 2.8E-06 42.9 5.8 47 2-48 52-113 (356)
39 KOG1155 Anaphase-promoting com 93.9 0.13 2.9E-06 47.2 5.9 36 15-50 340-396 (559)
40 PF13431 TPR_17: Tetratricopep 93.9 0.042 9.2E-07 31.9 1.8 21 27-47 1-21 (34)
41 TIGR02521 type_IV_pilW type IV 93.7 0.19 4.2E-06 34.8 5.1 38 3-40 48-100 (234)
42 PF13429 TPR_15: Tetratricopep 93.7 0.15 3.4E-06 39.5 5.0 32 15-46 156-187 (280)
43 PF13424 TPR_12: Tetratricopep 93.5 0.16 3.4E-06 32.2 4.0 16 18-33 59-74 (78)
44 KOG1173 Anaphase-promoting com 93.3 0.18 3.8E-06 47.0 5.6 50 2-51 471-535 (611)
45 PRK12370 invasion protein regu 93.3 0.37 8E-06 42.1 7.3 19 21-39 320-338 (553)
46 cd02680 MIT_calpain7_2 MIT: do 93.3 0.2 4.4E-06 34.8 4.6 33 1-33 2-34 (75)
47 cd02682 MIT_AAA_Arch MIT: doma 93.2 0.31 6.7E-06 34.0 5.5 39 2-40 3-48 (75)
48 PRK12370 invasion protein regu 93.1 0.24 5.3E-06 43.2 6.0 37 3-39 321-372 (553)
49 KOG1125 TPR repeat-containing 93.0 0.094 2E-06 48.4 3.4 22 18-39 443-464 (579)
50 cd02677 MIT_SNX15 MIT: domain 92.9 0.58 1.3E-05 32.0 6.4 39 1-39 2-47 (75)
51 KOG0739 AAA+-type ATPase [Post 92.7 0.82 1.8E-05 40.9 8.6 63 2-64 7-81 (439)
52 KOG3364 Membrane protein invol 92.5 1.8 3.9E-05 34.2 9.4 82 2-116 51-149 (149)
53 PF14853 Fis1_TPR_C: Fis1 C-te 92.4 0.18 4E-06 32.6 3.2 29 18-46 14-42 (53)
54 PF13176 TPR_7: Tetratricopept 92.4 0.079 1.7E-06 30.5 1.3 23 16-38 10-34 (36)
55 TIGR02795 tol_pal_ybgF tol-pal 92.3 0.48 1E-05 30.7 5.1 25 15-39 49-73 (119)
56 PRK11447 cellulose synthase su 92.1 0.35 7.5E-06 45.9 5.9 36 3-38 286-336 (1157)
57 PRK10153 DNA-binding transcrip 91.9 0.2 4.4E-06 44.6 4.0 24 18-41 466-489 (517)
58 PRK11189 lipoprotein NlpI; Pro 91.6 0.46 1E-05 38.1 5.4 37 3-39 43-98 (296)
59 KOG1126 DNA-binding cell divis 91.6 0.22 4.8E-06 46.5 4.0 37 3-39 438-489 (638)
60 cd02681 MIT_calpain7_1 MIT: do 91.6 1.2 2.7E-05 30.7 6.8 38 2-39 3-47 (76)
61 cd00189 TPR Tetratricopeptide 91.5 0.91 2E-05 25.9 5.3 21 17-37 80-100 (100)
62 PTZ00441 sporozoite surface pr 91.3 0.12 2.6E-06 47.6 1.9 35 83-117 501-535 (576)
63 PRK10370 formate-dependent nit 91.2 0.4 8.7E-06 36.9 4.5 19 21-39 126-144 (198)
64 TIGR02795 tol_pal_ybgF tol-pal 91.1 0.54 1.2E-05 30.4 4.5 31 9-39 6-36 (119)
65 TIGR03302 OM_YfiO outer membra 91.0 1 2.2E-05 33.7 6.4 28 19-46 129-156 (235)
66 TIGR00540 hemY_coli hemY prote 90.9 0.62 1.3E-05 38.9 5.6 48 17-64 347-398 (409)
67 PF06552 TOM20_plant: Plant sp 90.8 1.3 2.8E-05 35.9 7.2 25 15-39 45-69 (186)
68 PRK15179 Vi polysaccharide bio 90.7 0.55 1.2E-05 43.5 5.7 24 16-39 165-188 (694)
69 PF13174 TPR_6: Tetratricopept 90.5 0.76 1.6E-05 24.4 4.0 28 11-38 6-33 (33)
70 PRK11447 cellulose synthase su 90.5 0.45 9.7E-06 45.2 4.9 41 2-42 367-422 (1157)
71 KOG0550 Molecular chaperone (D 90.4 0.47 1E-05 43.2 4.7 21 19-39 263-283 (486)
72 PRK02603 photosystem I assembl 89.9 0.78 1.7E-05 33.5 4.9 23 19-41 86-108 (172)
73 CHL00033 ycf3 photosystem I as 89.7 0.89 1.9E-05 32.9 5.0 22 15-36 45-66 (168)
74 TIGR03302 OM_YfiO outer membra 89.4 0.74 1.6E-05 34.4 4.5 38 3-40 50-105 (235)
75 PF13424 TPR_12: Tetratricopep 89.3 0.53 1.1E-05 29.7 3.1 18 17-34 17-34 (78)
76 PRK09782 bacteriophage N4 rece 88.9 0.94 2E-05 43.6 5.8 19 21-39 659-677 (987)
77 PRK15331 chaperone protein Sic 88.9 1.5 3.4E-05 34.6 6.1 45 15-60 81-142 (165)
78 KOG0553 TPR repeat-containing 88.7 0.41 8.8E-06 41.3 3.0 28 15-42 91-118 (304)
79 PF13371 TPR_9: Tetratricopept 88.2 1.2 2.7E-05 27.4 4.3 22 18-39 8-29 (73)
80 PRK10049 pgaA outer membrane p 87.5 1.3 2.9E-05 40.3 5.6 43 2-44 375-432 (765)
81 TIGR02917 PEP_TPR_lipo putativ 87.4 1.2 2.6E-05 37.4 4.8 25 19-43 851-875 (899)
82 KOG0548 Molecular co-chaperone 87.3 1.2 2.7E-05 41.0 5.3 33 15-47 436-472 (539)
83 KOG0548 Molecular co-chaperone 87.3 0.83 1.8E-05 42.1 4.2 47 15-61 80-136 (539)
84 PRK10866 outer membrane biogen 87.3 1.3 2.9E-05 35.3 4.9 43 3-45 49-114 (243)
85 PF12569 NARP1: NMDA receptor- 87.0 1.3 2.7E-05 39.9 5.2 33 17-49 50-82 (517)
86 PF02609 Exonuc_VII_S: Exonucl 86.9 2.3 5E-05 27.0 5.0 30 3-32 2-40 (53)
87 PRK09782 bacteriophage N4 rece 86.6 1.7 3.6E-05 42.0 6.0 26 19-44 623-648 (987)
88 PRK10049 pgaA outer membrane p 86.4 2.4 5.1E-05 38.7 6.6 45 3-47 410-472 (765)
89 PF13429 TPR_15: Tetratricopep 86.0 2.8 6E-05 32.5 6.0 31 15-45 224-254 (280)
90 cd02679 MIT_spastin MIT: domai 86.0 1 2.2E-05 31.6 3.2 31 18-48 2-38 (79)
91 PRK11788 tetratricopeptide rep 85.9 2.3 5E-05 33.6 5.6 30 19-48 296-325 (389)
92 TIGR02521 type_IV_pilW type IV 85.2 2.8 6.1E-05 29.0 5.1 24 16-39 146-169 (234)
93 KOG3060 Uncharacterized conser 84.8 1.3 2.7E-05 38.2 3.9 32 12-43 93-124 (289)
94 PLN03098 LPA1 LOW PSII ACCUMUL 84.4 1.2 2.7E-05 40.1 3.8 23 17-39 87-109 (453)
95 COG3063 PilF Tfp pilus assembl 83.4 1.5 3.2E-05 37.1 3.7 20 20-39 84-103 (250)
96 KOG1126 DNA-binding cell divis 83.4 1.7 3.7E-05 40.8 4.4 25 15-39 533-557 (638)
97 PRK15179 Vi polysaccharide bio 83.1 3.2 7E-05 38.6 6.0 31 15-45 130-160 (694)
98 TIGR01280 xseB exodeoxyribonuc 82.9 3.9 8.6E-05 27.5 4.9 30 2-31 3-41 (67)
99 PLN03098 LPA1 LOW PSII ACCUMUL 82.8 2.1 4.6E-05 38.7 4.6 47 2-54 91-155 (453)
100 PRK15174 Vi polysaccharide exp 82.4 2.9 6.2E-05 37.7 5.3 23 18-40 123-145 (656)
101 PF12895 Apc3: Anaphase-promot 82.4 1.5 3.3E-05 28.3 2.7 20 19-38 3-22 (84)
102 TIGR02917 PEP_TPR_lipo putativ 82.3 3.3 7.2E-05 34.8 5.2 22 18-39 648-669 (899)
103 PRK10803 tol-pal system protei 81.9 2.4 5.1E-05 34.7 4.2 24 17-40 192-215 (263)
104 KOG0624 dsRNA-activated protei 81.5 4.7 0.0001 36.7 6.3 35 17-51 353-387 (504)
105 PRK15174 Vi polysaccharide exp 80.9 3 6.5E-05 37.6 4.9 24 19-42 298-321 (656)
106 PRK00977 exodeoxyribonuclease 80.8 4.9 0.00011 28.0 4.9 30 2-31 12-50 (80)
107 COG3063 PilF Tfp pilus assembl 80.4 3.6 7.9E-05 34.8 4.9 50 8-57 38-108 (250)
108 PF03704 BTAD: Bacterial trans 80.1 6.5 0.00014 27.6 5.5 33 15-47 72-105 (146)
109 COG4235 Cytochrome c biogenesi 79.7 5 0.00011 34.2 5.6 44 2-45 138-196 (287)
110 KOG1173 Anaphase-promoting com 78.8 5.8 0.00013 37.3 6.1 31 15-45 465-495 (611)
111 PF03704 BTAD: Bacterial trans 78.5 10 0.00023 26.5 6.1 26 15-40 113-138 (146)
112 KOG2076 RNA polymerase III tra 78.5 2.7 5.9E-05 40.9 4.0 31 15-45 459-489 (895)
113 PLN02789 farnesyltranstransfer 78.4 4.7 0.0001 33.8 5.0 23 17-39 154-176 (320)
114 KOG3824 Huntingtin interacting 78.4 3 6.5E-05 37.5 4.0 38 2-39 113-150 (472)
115 KOG4648 Uncharacterized conser 78.0 1.4 3.1E-05 40.0 2.0 24 20-43 112-135 (536)
116 PRK14574 hmsH outer membrane p 78.0 4.7 0.0001 38.3 5.4 41 20-60 184-238 (822)
117 PRK10153 DNA-binding transcrip 77.2 2.1 4.6E-05 38.2 2.8 20 20-39 357-376 (517)
118 KOG4234 TPR repeat-containing 76.9 7.4 0.00016 33.2 5.8 37 17-53 180-217 (271)
119 PF04733 Coatomer_E: Coatomer 76.1 7.1 0.00015 32.2 5.4 48 15-62 211-262 (290)
120 KOG0543 FKBP-type peptidyl-pro 75.8 8.1 0.00018 34.5 5.9 53 15-67 301-357 (397)
121 PRK11788 tetratricopeptide rep 75.2 12 0.00027 29.5 6.3 21 18-38 227-247 (389)
122 PF04212 MIT: MIT (microtubule 74.6 2.6 5.6E-05 27.3 2.0 19 20-38 1-19 (69)
123 KOG0547 Translocase of outer m 74.3 3.2 7E-05 38.7 3.2 44 20-63 130-187 (606)
124 smart00745 MIT Microtubule Int 73.3 4 8.6E-05 26.7 2.7 38 19-57 3-40 (77)
125 PF11732 Thoc2: Transcription- 73.2 1.8 3.8E-05 30.4 1.0 15 88-102 36-50 (77)
126 cd05804 StaR_like StaR_like; a 72.9 5.7 0.00012 31.1 3.9 24 16-39 125-148 (355)
127 PF11044 TMEMspv1-c74-12: Plec 72.3 3.4 7.4E-05 27.3 2.1 13 101-113 12-24 (49)
128 PLN02789 farnesyltranstransfer 72.0 9.4 0.0002 32.0 5.2 18 22-39 125-142 (320)
129 PRK14574 hmsH outer membrane p 72.0 6.1 0.00013 37.5 4.5 24 19-42 116-139 (822)
130 KOG4626 O-linked N-acetylgluco 71.7 3.3 7.1E-05 40.1 2.7 32 19-50 164-195 (966)
131 KOG0543 FKBP-type peptidyl-pro 71.4 18 0.00038 32.4 7.0 26 18-43 270-297 (397)
132 PF02255 PTS_IIA: PTS system, 71.2 11 0.00025 26.8 4.8 46 4-62 13-58 (96)
133 KOG2002 TPR-containing nuclear 70.6 4 8.7E-05 40.2 3.1 25 15-39 622-646 (1018)
134 KOG4507 Uncharacterized conser 69.9 11 0.00023 36.5 5.6 48 1-48 657-719 (886)
135 KOG0376 Serine-threonine phosp 69.4 4.6 0.0001 36.9 3.0 40 19-58 18-71 (476)
136 PF02071 NSF: Aromatic-di-Alan 68.9 2 4.3E-05 20.9 0.4 11 18-28 2-12 (12)
137 PF14938 SNAP: Soluble NSF att 68.8 14 0.00031 29.4 5.4 16 19-34 129-144 (282)
138 KOG0550 Molecular chaperone (D 68.7 10 0.00022 34.8 5.0 75 2-110 303-395 (486)
139 PRK14066 exodeoxyribonuclease 68.6 16 0.00034 25.3 4.9 30 2-31 6-44 (75)
140 KOG4648 Uncharacterized conser 68.4 12 0.00026 34.3 5.4 31 15-45 175-205 (536)
141 KOG1156 N-terminal acetyltrans 68.3 14 0.0003 35.4 5.9 28 15-42 85-112 (700)
142 PF13374 TPR_10: Tetratricopep 67.9 17 0.00038 19.6 4.3 19 15-33 19-37 (42)
143 PRK14063 exodeoxyribonuclease 67.8 17 0.00037 25.1 4.9 30 2-31 7-45 (76)
144 PRK14064 exodeoxyribonuclease 67.6 17 0.00037 25.1 4.9 30 2-31 8-46 (75)
145 PRK04778 septation ring format 66.9 13 0.00028 33.4 5.3 53 2-62 495-561 (569)
146 TIGR00823 EIIA-LAC phosphotran 66.5 15 0.00033 26.5 4.6 26 4-29 16-41 (99)
147 PRK14069 exodeoxyribonuclease 66.3 18 0.00039 26.4 5.1 30 2-31 10-48 (95)
148 KOG0547 Translocase of outer m 66.2 11 0.00024 35.3 4.8 20 18-37 475-494 (606)
149 TIGR01987 HI0074 nucleotidyltr 65.9 9.9 0.00021 28.3 3.7 28 18-45 2-30 (123)
150 PRK14067 exodeoxyribonuclease 65.5 19 0.00042 25.2 4.9 30 2-31 9-47 (80)
151 PRK09591 celC cellobiose phosp 64.4 17 0.00037 26.4 4.7 28 4-31 19-46 (104)
152 smart00386 HAT HAT (Half-A-TPR 64.4 7.5 0.00016 19.9 2.1 20 20-39 2-21 (33)
153 cd02678 MIT_VPS4 MIT: domain c 64.3 7.1 0.00015 26.0 2.5 34 20-54 2-35 (75)
154 TIGR00540 hemY_coli hemY prote 64.3 18 0.00038 30.3 5.3 34 15-48 273-311 (409)
155 COG5010 TadD Flp pilus assembl 64.2 12 0.00026 31.7 4.3 25 15-39 110-134 (257)
156 PRK10747 putative protoheme IX 63.8 23 0.00049 29.7 5.9 28 15-42 128-155 (398)
157 PF12688 TPR_5: Tetratrico pep 63.6 13 0.00028 27.2 3.9 32 9-40 5-36 (120)
158 PF04781 DUF627: Protein of un 63.3 9.6 0.00021 28.5 3.2 32 19-50 58-103 (111)
159 cd00215 PTS_IIA_lac PTS_IIA, P 63.2 19 0.00041 25.8 4.6 28 4-31 14-41 (97)
160 PF07720 TPR_3: Tetratricopept 63.1 5.8 0.00012 23.7 1.7 22 17-38 13-36 (36)
161 KOG1840 Kinesin light chain [C 62.9 26 0.00057 31.9 6.5 46 15-60 300-368 (508)
162 PRK10803 tol-pal system protei 62.3 19 0.00041 29.5 5.0 30 17-46 229-258 (263)
163 PRK10866 outer membrane biogen 62.2 14 0.0003 29.5 4.2 41 5-45 32-72 (243)
164 PF13512 TPR_18: Tetratricopep 61.9 19 0.0004 27.8 4.7 29 18-46 60-93 (142)
165 cd02677 MIT_SNX15 MIT: domain 61.6 9.4 0.0002 26.1 2.7 37 20-57 2-38 (75)
166 PRK15363 pathogenicity island 61.0 13 0.00029 29.0 3.8 38 18-55 48-85 (157)
167 PRK14068 exodeoxyribonuclease 60.4 28 0.00061 24.2 4.9 30 2-31 8-46 (76)
168 COG5010 TadD Flp pilus assembl 58.9 15 0.00033 31.1 4.0 46 3-48 117-177 (257)
169 PF08780 NTase_sub_bind: Nucle 58.1 13 0.00029 27.1 3.2 28 18-45 3-32 (124)
170 COG1849 Uncharacterized protei 57.8 28 0.00061 25.5 4.7 29 3-31 11-48 (90)
171 PRK10454 PTS system N,N'-diace 57.6 26 0.00056 26.1 4.6 11 50-60 63-73 (115)
172 KOG1586 Protein required for f 57.3 28 0.0006 30.1 5.4 35 15-49 131-165 (288)
173 KOG1128 Uncharacterized conser 55.5 44 0.00095 32.5 6.8 48 15-62 529-580 (777)
174 COG4783 Putative Zn-dependent 55.0 20 0.00043 33.0 4.4 29 17-45 352-380 (484)
175 COG1447 CelC Phosphotransferas 54.9 27 0.00059 26.0 4.4 27 4-30 18-51 (105)
176 PF08238 Sel1: Sel1 repeat; I 53.8 17 0.00038 19.9 2.6 16 19-34 22-37 (39)
177 PF01649 Ribosomal_S20p: Ribos 52.9 49 0.0011 23.2 5.2 32 2-33 27-62 (84)
178 cd00922 Cyt_c_Oxidase_IV Cytoc 52.5 20 0.00043 27.2 3.4 31 91-122 73-105 (136)
179 PF10814 DUF2562: Protein of u 52.1 2.8 6E-05 32.6 -1.3 25 101-125 101-125 (133)
180 KOG0495 HAT repeat protein [RN 51.5 34 0.00073 33.5 5.4 30 19-48 831-865 (913)
181 PF06936 Selenoprotein_S: Sele 51.1 5 0.00011 32.2 0.0 18 97-114 36-53 (190)
182 PF10373 EST1_DNA_bind: Est1 D 50.9 11 0.00024 28.7 1.8 16 24-39 1-16 (278)
183 cd05804 StaR_like StaR_like; a 50.7 24 0.00053 27.6 3.8 37 2-38 130-181 (355)
184 PLN03184 chloroplast Hsp70; Pr 50.7 94 0.002 28.7 8.0 30 15-45 591-620 (673)
185 KOG3824 Huntingtin interacting 50.5 18 0.0004 32.7 3.3 37 3-39 133-184 (472)
186 PF13525 YfiO: Outer membrane 50.5 41 0.00088 25.6 4.9 31 17-47 54-89 (203)
187 COG4235 Cytochrome c biogenesi 50.0 35 0.00075 29.2 4.8 47 1-47 208-269 (287)
188 PF10579 Rapsyn_N: Rapsyn N-te 49.0 63 0.0014 23.1 5.3 49 5-53 6-71 (80)
189 PF04888 SseC: Secretion syste 49.0 17 0.00036 29.6 2.7 20 91-110 56-75 (306)
190 PRK14720 transcript cleavage f 48.4 28 0.0006 34.1 4.4 19 21-39 132-150 (906)
191 PRK00239 rpsT 30S ribosomal pr 48.0 49 0.0011 23.5 4.6 33 2-34 28-64 (88)
192 PF11169 DUF2956: Protein of u 47.3 14 0.00031 27.6 1.9 17 94-113 82-98 (103)
193 TIGR00029 S20 ribosomal protei 47.0 51 0.0011 23.4 4.6 32 2-33 28-63 (87)
194 PRK14720 transcript cleavage f 46.9 39 0.00084 33.1 5.1 61 3-63 133-214 (906)
195 PRK15374 pathogenicity island 46.5 15 0.00033 34.5 2.3 16 95-110 319-334 (593)
196 PF11460 DUF3007: Protein of u 46.1 15 0.00033 27.4 1.9 12 100-111 40-51 (104)
197 PF11601 Shal-type: Shal-type 45.9 4.9 0.00011 23.9 -0.6 24 96-119 3-27 (28)
198 KOG4162 Predicted calmodulin-b 45.7 23 0.00049 34.4 3.4 26 15-40 764-789 (799)
199 KOG1157 Predicted guanosine po 45.7 19 0.00041 33.4 2.7 44 1-44 264-330 (543)
200 PF15100 TMEM187: TMEM187 prot 45.5 16 0.00036 30.9 2.2 27 89-115 77-103 (242)
201 KOG2002 TPR-containing nuclear 45.4 42 0.0009 33.5 5.1 38 1-39 214-270 (1018)
202 PF09016 Pas_Saposin: Pas fact 44.2 23 0.0005 25.3 2.4 24 40-63 5-28 (76)
203 COG1722 XseB Exonuclease VII s 44.0 69 0.0015 22.5 4.8 17 15-31 34-50 (81)
204 TIGR01985 phasin_2 phasin. Mem 43.8 1.2E+02 0.0025 22.0 6.2 59 4-62 4-71 (112)
205 PF09986 DUF2225: Uncharacteri 43.7 65 0.0014 25.6 5.2 23 15-37 135-157 (214)
206 PF10516 SHNi-TPR: SHNi-TPR; 43.7 17 0.00038 22.1 1.6 18 17-34 13-30 (38)
207 KOG1125 TPR repeat-containing 43.6 53 0.0012 30.9 5.3 47 2-48 301-362 (579)
208 PF09986 DUF2225: Uncharacteri 43.2 50 0.0011 26.3 4.5 47 2-49 141-208 (214)
209 PF09976 TPR_21: Tetratricopep 43.1 56 0.0012 23.1 4.4 23 18-40 61-83 (145)
210 PF10300 DUF3808: Protein of u 42.5 37 0.0008 29.8 4.0 38 2-39 283-339 (468)
211 PF12688 TPR_5: Tetratrico pep 42.1 96 0.0021 22.6 5.6 37 3-39 18-72 (120)
212 KOG1127 TPR repeat-containing 41.7 34 0.00074 34.7 4.0 29 22-50 800-828 (1238)
213 PF09295 ChAPs: ChAPs (Chs5p-A 41.6 32 0.0007 30.1 3.5 50 3-52 217-295 (395)
214 COG0457 NrfG FOG: TPR repeat [ 41.1 91 0.002 19.6 5.1 24 15-38 105-128 (291)
215 KOG4449 Translocase of outer m 41.0 20 0.00044 24.1 1.7 18 98-119 25-42 (53)
216 PF09753 Use1: Membrane fusion 40.8 26 0.00056 28.1 2.6 17 96-112 228-244 (251)
217 PF02936 COX4: Cytochrome c ox 40.6 24 0.00052 26.9 2.3 32 89-120 70-102 (142)
218 PHA01080 hypothetical protein 40.2 28 0.0006 25.1 2.4 20 96-115 56-76 (80)
219 PF11587 Prion_bPrPp: Major pr 40.2 16 0.00036 21.8 1.0 20 95-115 5-26 (29)
220 PF06109 HlyE: Haemolysin E (H 39.9 74 0.0016 27.2 5.2 32 2-33 117-168 (299)
221 PF14155 DUF4307: Domain of un 39.6 28 0.00061 25.3 2.4 20 100-119 14-33 (112)
222 KOG2076 RNA polymerase III tra 39.5 65 0.0014 31.8 5.4 25 15-39 217-241 (895)
223 PF08159 NUC153: NUC153 domain 39.1 18 0.00038 21.4 1.1 14 31-44 12-25 (30)
224 COG2956 Predicted N-acetylgluc 39.1 37 0.00079 30.5 3.4 47 14-60 189-253 (389)
225 PF13281 DUF4071: Domain of un 38.7 44 0.00095 29.5 3.8 45 18-62 239-286 (374)
226 PF02038 ATP1G1_PLM_MAT8: ATP1 38.4 35 0.00076 22.6 2.5 8 89-96 4-11 (50)
227 KOG4162 Predicted calmodulin-b 38.2 78 0.0017 31.0 5.7 31 15-45 694-724 (799)
228 KOG3386 Copper transporter [In 37.7 26 0.00056 27.2 2.1 18 97-114 120-137 (155)
229 KOG2518 5'-3' exonuclease [Rep 37.6 18 0.00039 33.8 1.4 29 9-37 100-128 (556)
230 COG3071 HemY Uncharacterized e 37.4 81 0.0018 28.5 5.3 26 18-43 341-366 (400)
231 cd07602 BAR_RhoGAP_OPHN1-like 37.1 1E+02 0.0023 25.0 5.5 28 15-51 110-137 (207)
232 cd02680 MIT_calpain7_2 MIT: do 36.9 1.1E+02 0.0023 21.2 4.9 16 15-30 23-38 (75)
233 PF13525 YfiO: Outer membrane 36.7 59 0.0013 24.7 3.9 41 5-45 5-45 (203)
234 KOG2003 TPR repeat-containing 36.4 1.6E+02 0.0035 28.3 7.3 16 40-55 714-729 (840)
235 PF04010 DUF357: Protein of un 36.2 66 0.0014 22.1 3.7 18 15-32 26-43 (75)
236 PF13446 RPT: A repeated domai 35.1 56 0.0012 20.7 3.0 27 23-49 21-48 (62)
237 PF10855 DUF2648: Protein of u 34.4 32 0.00069 21.2 1.7 15 100-114 6-20 (33)
238 cd00280 TRFH Telomeric Repeat 34.4 42 0.00091 27.7 2.9 42 18-60 124-166 (200)
239 PF06957 COPI_C: Coatomer (COP 33.3 1.1E+02 0.0024 27.5 5.6 46 3-49 221-287 (422)
240 KOG4642 Chaperone-dependent E3 33.1 40 0.00087 29.2 2.7 28 17-44 22-49 (284)
241 PF13041 PPR_2: PPR repeat fam 33.1 80 0.0017 18.5 3.3 29 19-47 17-47 (50)
242 smart00671 SEL1 Sel1-like repe 32.9 47 0.001 17.7 2.1 17 19-35 19-35 (36)
243 PF00784 MyTH4: MyTH4 domain; 32.7 95 0.0021 21.8 4.2 48 39-106 4-51 (114)
244 PF12925 APP_E2: E2 domain of 32.4 1.3E+02 0.0028 24.5 5.4 25 15-39 107-131 (193)
245 PF14938 SNAP: Soluble NSF att 31.4 88 0.0019 24.9 4.2 8 40-47 96-103 (282)
246 PF02259 FAT: FAT domain; Int 30.9 1.1E+02 0.0024 23.8 4.6 23 17-39 270-292 (352)
247 cd07637 BAR_ACAP3 The Bin/Amph 30.8 1.2E+02 0.0026 24.2 4.9 20 15-34 104-123 (200)
248 cd07639 BAR_ACAP1 The Bin/Amph 30.8 73 0.0016 25.7 3.7 20 15-34 104-123 (200)
249 COG0803 LraI ABC-type metal io 30.3 1.1E+02 0.0025 25.1 4.8 43 20-62 142-186 (303)
250 PRK00575 tatA twin arginine tr 30.3 30 0.00064 25.3 1.3 22 95-116 3-24 (92)
251 PF14316 DUF4381: Domain of un 30.1 51 0.0011 24.3 2.5 20 92-111 16-35 (146)
252 PF03945 Endotoxin_N: delta en 29.4 2.2E+02 0.0048 21.6 6.0 26 20-45 72-100 (226)
253 PF02184 HAT: HAT (Half-A-TPR) 29.2 90 0.002 18.8 3.0 23 21-43 3-25 (32)
254 KOG3060 Uncharacterized conser 28.9 2E+02 0.0044 25.1 6.2 26 17-42 166-191 (289)
255 PRK14160 heat shock protein Gr 28.9 3.2E+02 0.007 22.3 7.5 39 24-64 120-158 (211)
256 PF08424 NRDE-2: NRDE-2, neces 28.5 1.3E+02 0.0027 24.9 4.8 25 15-39 41-65 (321)
257 PF07423 DUF1510: Protein of u 28.5 31 0.00068 28.3 1.2 20 95-114 18-37 (217)
258 PRK05771 V-type ATP synthase s 28.3 35 0.00077 30.9 1.6 26 84-109 469-494 (646)
259 PF10953 DUF2754: Protein of u 28.1 11 0.00024 26.4 -1.2 18 93-110 32-49 (70)
260 KOG1941 Acetylcholine receptor 28.1 51 0.0011 30.4 2.6 42 15-56 132-193 (518)
261 cd09242 BRO1_ScBro1_like Prote 27.4 1.9E+02 0.004 24.5 5.7 7 88-94 315-321 (348)
262 PRK00191 tatA twin arginine tr 27.0 41 0.00089 24.2 1.5 24 95-118 2-25 (84)
263 KOG1174 Anaphase-promoting com 26.8 76 0.0016 29.7 3.5 23 15-37 402-436 (564)
264 PF01239 PPTA: Protein prenylt 26.6 1.2E+02 0.0026 16.6 3.2 22 24-45 2-26 (31)
265 PF12955 DUF3844: Domain of un 26.5 81 0.0017 23.4 3.0 29 85-114 61-90 (103)
266 PF09125 COX2-transmemb: Cytoc 26.5 78 0.0017 20.0 2.5 9 97-105 14-22 (38)
267 cd07631 BAR_APPL1 The Bin/Amph 26.3 1.4E+02 0.003 24.8 4.6 29 15-52 108-136 (215)
268 CHL00102 rps20 ribosomal prote 26.2 1.8E+02 0.0038 21.0 4.6 32 2-33 28-70 (93)
269 PF09721 Exosortase_EpsH: Tran 25.8 79 0.0017 24.7 3.0 25 90-114 235-259 (264)
270 PF05892 Tricho_coat: Trichovi 25.7 69 0.0015 26.2 2.7 33 22-54 111-143 (194)
271 KOG1118 Lysophosphatidic acid 25.5 1.3E+02 0.0028 26.9 4.6 15 15-29 179-193 (366)
272 PHA02898 virion envelope prote 25.5 90 0.002 23.0 3.0 28 85-112 35-62 (92)
273 cd01324 cbb3_Oxidase_CcoQ Cyto 25.3 79 0.0017 20.1 2.4 11 100-110 20-30 (48)
274 PF14644 DUF4456: Domain of un 25.2 1.6E+02 0.0035 23.1 4.7 51 1-57 22-76 (208)
275 PF14798 Ca_hom_mod: Calcium h 24.8 53 0.0011 27.3 2.0 15 95-109 179-193 (251)
276 PF09656 PGPGW: Putative trans 24.6 59 0.0013 21.4 1.8 14 95-108 5-18 (53)
277 PF07332 DUF1469: Protein of u 24.5 66 0.0014 22.5 2.2 12 105-116 87-98 (121)
278 COG2036 HHT1 Histones H3 and H 24.5 1.9E+02 0.0042 20.8 4.6 28 4-31 40-67 (91)
279 COG1340 Uncharacterized archae 24.3 1.9E+02 0.0042 25.0 5.3 44 15-58 186-230 (294)
280 PF10112 Halogen_Hydrol: 5-bro 24.3 76 0.0017 24.3 2.6 21 94-114 29-49 (199)
281 TIGR02284 conserved hypothetic 24.3 2.3E+02 0.005 20.9 5.1 33 10-42 86-118 (139)
282 cd09248 BRO1_Rhophilin_1 Prote 24.1 1.8E+02 0.004 25.8 5.2 42 22-63 174-220 (384)
283 COG0268 RpsT Ribosomal protein 23.9 2.1E+02 0.0046 20.7 4.7 32 2-33 28-63 (88)
284 PRK06851 hypothetical protein; 23.9 1.5E+02 0.0032 26.0 4.5 31 15-45 326-356 (367)
285 PRK10054 putative transporter; 23.8 96 0.0021 25.3 3.3 26 94-119 362-388 (395)
286 PHA02680 ORF090 IMV phosphoryl 23.8 87 0.0019 23.1 2.7 24 96-119 16-40 (91)
287 PF07464 ApoLp-III: Apolipopho 23.7 43 0.00093 26.1 1.2 59 2-62 43-101 (155)
288 PRK08455 fliL flagellar basal 23.7 1E+02 0.0023 24.1 3.3 30 85-114 12-44 (182)
289 PRK14070 exodeoxyribonuclease 23.7 1.5E+02 0.0032 20.3 3.7 17 15-31 19-35 (69)
290 PRK14762 membrane protein; Pro 23.7 71 0.0015 18.8 1.8 14 96-109 3-16 (27)
291 PF10704 DUF2508: Protein of u 23.6 2.3E+02 0.0051 18.9 5.3 23 15-39 22-44 (71)
292 PRK14065 exodeoxyribonuclease 23.6 2.3E+02 0.005 20.7 4.8 29 3-31 28-65 (86)
293 KOG2053 Mitochondrial inherita 23.5 1.2E+02 0.0025 30.3 4.2 23 17-39 89-111 (932)
294 PHA02898 virion envelope prote 23.3 62 0.0013 23.9 1.9 23 96-118 16-39 (92)
295 TIGR03109 exosortase_1 exosort 23.2 75 0.0016 26.4 2.6 25 89-113 238-262 (267)
296 PF04011 LemA: LemA family; I 23.0 2.5E+02 0.0054 21.3 5.2 25 15-39 135-159 (186)
297 cd07620 BAR_SH3BP1 The Bin/Amp 22.9 2E+02 0.0043 24.5 5.0 56 2-62 180-241 (257)
298 KOG1127 TPR repeat-containing 22.9 98 0.0021 31.6 3.6 41 21-62 90-130 (1238)
299 KOG0545 Aryl-hydrocarbon recep 22.8 1.1E+02 0.0024 26.9 3.6 12 3-14 195-206 (329)
300 TIGR01410 tatB twin arginine-t 22.7 36 0.00079 23.6 0.5 20 94-113 1-20 (80)
301 PF01471 PG_binding_1: Putativ 22.6 1.2E+02 0.0025 18.4 2.8 35 4-38 3-47 (57)
302 KOG3616 Selective LIM binding 22.6 71 0.0015 32.4 2.6 36 20-62 676-722 (1636)
303 PF13376 OmdA: Bacteriocin-pro 22.5 1.1E+02 0.0024 19.6 2.8 24 8-31 9-34 (63)
304 PLN03218 maturation of RBCL 1; 22.4 2.4E+02 0.0051 28.0 6.1 45 19-63 733-785 (1060)
305 PRK14756 hypothetical protein; 22.3 1.1E+02 0.0024 18.3 2.5 21 89-109 2-22 (29)
306 COG2707 Predicted membrane pro 21.9 76 0.0017 25.3 2.2 17 95-111 82-99 (151)
307 KOG0980 Actin-binding protein 21.9 2.1E+02 0.0045 28.8 5.5 44 2-45 760-832 (980)
308 PF05504 Spore_GerAC: Spore ge 21.8 2.1E+02 0.0045 20.7 4.4 34 4-37 93-126 (171)
309 COG3118 Thioredoxin domain-con 21.8 1.3E+02 0.0028 26.3 3.7 32 7-38 136-167 (304)
310 PF11804 DUF3325: Protein of u 21.8 83 0.0018 22.9 2.3 11 94-104 39-49 (106)
311 smart00428 H3 Histone H3. 21.7 2.4E+02 0.0052 20.8 4.7 29 3-31 56-84 (105)
312 PF04193 PQ-loop: PQ loop repe 21.7 98 0.0021 19.1 2.4 17 94-110 2-18 (61)
313 KOG2003 TPR repeat-containing 21.7 1.1E+02 0.0023 29.4 3.5 43 15-57 534-583 (840)
314 KOG1846 Uncharacterized conser 21.7 92 0.002 32.1 3.2 31 88-122 1176-1209(1777)
315 COG2956 Predicted N-acetylgluc 21.7 1.2E+02 0.0025 27.4 3.6 34 4-37 198-246 (389)
316 smart00526 H15 Domain in histo 21.7 27 0.00058 22.4 -0.3 25 1-25 10-36 (66)
317 KOG1129 TPR repeat-containing 21.6 1E+02 0.0022 28.3 3.2 45 3-47 375-437 (478)
318 PF15651 Tox-SGS: Salivary gla 21.6 78 0.0017 23.6 2.1 15 96-110 79-93 (100)
319 COG3629 DnrI DNA-binding trans 21.6 2.5E+02 0.0055 23.8 5.4 46 4-51 154-200 (280)
320 TIGR02887 spore_ger_x_C germin 21.4 2.1E+02 0.0046 23.6 4.9 48 4-56 294-341 (371)
321 PF05767 Pox_A14: Poxvirus vir 21.3 1.2E+02 0.0027 22.3 3.1 28 85-112 35-62 (92)
322 PRK13460 F0F1 ATP synthase sub 21.2 1.1E+02 0.0023 23.2 2.9 21 91-111 13-33 (173)
323 KOG1156 N-terminal acetyltrans 21.2 2E+02 0.0044 27.8 5.2 36 15-50 229-264 (700)
324 PF13226 DUF4034: Domain of un 21.1 1E+02 0.0023 26.0 3.0 26 15-40 109-134 (277)
325 KOG2997 F-box protein FBX9 [Ge 20.6 83 0.0018 28.2 2.4 36 22-58 17-52 (366)
326 TIGR02602 8TM_EpsH eight trans 20.4 1E+02 0.0022 25.0 2.8 21 89-109 213-233 (241)
327 PF10975 DUF2802: Protein of u 20.4 2.9E+02 0.0062 18.7 5.3 50 3-60 4-53 (70)
328 TIGR03113 exosortase_2 exosort 20.3 84 0.0018 26.3 2.3 24 89-112 237-260 (268)
329 PRK15244 virulence protein Spv 20.2 50 0.0011 31.2 1.1 37 89-125 330-373 (591)
330 PF02561 FliS: Flagellar prote 20.2 1.7E+02 0.0036 20.9 3.6 31 2-32 26-56 (122)
331 cd07603 BAR_ACAPs The Bin/Amph 20.1 2.4E+02 0.0052 22.3 4.8 20 15-34 104-123 (200)
No 1
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=100.00 E-value=4.7e-56 Score=350.67 Aligned_cols=111 Identities=80% Similarity=1.175 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchh
Q 033160 1 MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL 54 (126)
Q Consensus 1 Mi~dAisKleeAL~--------------------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPel 54 (126)
||+|||+||||||. .+|+++|++|.+|||||+++||+|++|||||||++|||||
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~l 129 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPEL 129 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHH
Confidence 79999999999999 7999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccCCCCCCCCCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHhhh
Q 033160 55 HMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAK 114 (126)
Q Consensus 55 H~ei~kq~~~qq~~~~~~~g~~~~s~~k~~kkkk~sDf~YDv~GWviLa~givaWvg~Ak 114 (126)
|+|||||+++||.+|+ +++++++.+++||||+|||||||+|||||++||||||||||
T Consensus 130 h~e~~~~~~~~q~~~~---~~~~~~~~~~~k~kk~sd~~ydv~gwvil~~givawv~~ak 186 (186)
T PF06552_consen 130 HMEIHKQGLGQQAMGG---ASSSSSSAKSSKKKKSSDFKYDVFGWVILAVGIVAWVGMAK 186 (186)
T ss_dssp HHHHHHSSS---------------------------------------------------
T ss_pred HHHHHHHHhhhhhccC---CCCCCCCccccccccccchhhhhcchHHHHHHHHHHHhhcC
Confidence 9999999999998655 46666778999999999999999999999999999999997
No 2
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=1.7e-07 Score=79.52 Aligned_cols=49 Identities=29% Similarity=0.417 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK 50 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~K 50 (126)
-.+||.-.|-||. --+++.|++|.++|||||++||+||.||++|++|.+
T Consensus 131 ~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 131 YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 3466666666666 456788999999999999999999999999999953
No 3
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.37 E-value=0.00033 Score=38.99 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc
Q 033160 13 LMDEAKEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 13 L~~~A~~~f~kA~~~FqkAvd~dP~N 38 (126)
..-..++.|++|.+||++|+++||+|
T Consensus 9 ~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 9 NAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 33456788999999999999999987
No 4
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.19 E-value=0.00022 Score=39.10 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~N 38 (126)
-..++.|++|.+||++|+.++|+|
T Consensus 11 ~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 11 YYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHCcCC
Confidence 445678999999999999999987
No 5
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.94 E-value=0.0013 Score=40.61 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
..+.|++|..+|+++++.+|+|.-+.-.|
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~l 37 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPDNPEAWYLL 37 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTTHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 34556666666666666666665444333
No 6
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=96.85 E-value=0.0059 Score=40.94 Aligned_cols=44 Identities=27% Similarity=0.409 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
||+.|+.-+.+|+. .+|.++|..|.++|.+++..+| |+..++.|
T Consensus 2 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~-~~~~k~~~ 52 (75)
T cd02678 2 FLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEK-NPKSKESI 52 (75)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHH
Confidence 57899999999988 8999999999999999999999 55555554
No 7
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.76 E-value=0.0041 Score=55.44 Aligned_cols=52 Identities=29% Similarity=0.365 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHHHh-ccccc
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIHKH-GLGQQ 66 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~kq-~~~qq 66 (126)
.||++.+++|.++|+.+++.+|.|- .||+-|.|-...|||..+|--- +.+||
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc
Confidence 8999999999999999999999985 8999999999999999988652 24454
No 8
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.75 E-value=0.0015 Score=36.09 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~N 38 (126)
-..++.|++|.+||++|++++|+|
T Consensus 11 y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 11 YEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCC
Confidence 445788999999999999999976
No 9
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.73 E-value=0.0029 Score=38.99 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQK 43 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~YkK 43 (126)
+.|++|.+++++++..+|+|..|+.
T Consensus 39 g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 39 GQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp T-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 3445555555555555555544443
No 10
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=96.69 E-value=0.012 Score=38.24 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
||+.|+.-+.+|+. .+|.++|.+|.++|.+++..+|+.+
T Consensus 1 y~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~ 46 (69)
T PF04212_consen 1 YLDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPE 46 (69)
T ss_dssp -HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence 68999999999999 9999999999999999999998444
No 11
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=96.65 E-value=0.015 Score=38.23 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHhhcCchhHHHHHH
Q 033160 2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE----LYQKSLEVAAKAPELHMEIHK 60 (126)
Q Consensus 2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne----~YkKsLe~a~KAPelH~ei~k 60 (126)
++.|+.-+..|+. .+|.++|.+|.++|.+++..+|+.+ +-.|..+.-.+|=+|...+..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~~~~ 74 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKSLLE 74 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678888888888 8999999999999999999998633 233444555666666665543
No 12
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.48 E-value=0.0063 Score=37.70 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
+|..=+..|..-.-.+.|++|..||++|++.||+|....-++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~ 43 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNL 43 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 344445556666667889999999999999999987443333
No 13
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.42 E-value=0.0091 Score=36.96 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHH---------------HHHHH-HHHHHHHHHHHHHhcCC
Q 033160 2 ILDAISKLEEALM---------------DEAKE-YFNKATLYFQQAVDEEP 36 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~-~f~kA~~~FqkAvd~dP 36 (126)
.++|+.-|++||. -.-++ .|++|.++|++|+.+||
T Consensus 19 ~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 19 YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3678899999998 34445 79999999999999998
No 14
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=96.32 E-value=0.034 Score=36.68 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
|++.|+..+..|+. ++|.++|..|.+.|.+++..+|+ +..++.|
T Consensus 2 ~~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~-~~~k~~l 52 (75)
T cd02656 2 LLQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKE-PKLRKLL 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCC-HHHHHHH
Confidence 57889999999988 89999999999999999999986 4444443
No 15
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.18 E-value=0.014 Score=42.43 Aligned_cols=44 Identities=11% Similarity=0.010 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
..+|+.-|+.|+. -...+.|++|..+|++|+.++|+|....-+|
T Consensus 40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3567777777766 5667777888888888888888776444333
No 16
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.10 E-value=0.016 Score=48.28 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-+++||. -..++.|++|..+|++|++++|+|.
T Consensus 19 ~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~ 70 (356)
T PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA 70 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 456666666665 2233455666666666666666655
No 17
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.10 E-value=0.0059 Score=36.37 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
-...+.+++|.++|+++|..+|+|...+..|
T Consensus 11 ~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 11 YRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4567889999999999999999998766554
No 18
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.04 E-value=0.014 Score=39.78 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|+.++. -...+.|++|..+|+++++.+|+|.
T Consensus 34 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 34 DEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 566666766665 2334567778888888888887775
No 19
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.01 E-value=0.028 Score=41.18 Aligned_cols=33 Identities=36% Similarity=0.587 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 49 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~ 49 (126)
++|+.+|++|.+||++++..+|+| |..++..-+
T Consensus 130 ~~A~~~~~~A~~~~~~a~~~~p~~--~~~~~~~~~ 162 (172)
T PRK02603 130 DEAEALFDKAAEYWKQAIRLAPNN--YIEAQNWLK 162 (172)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchh--HHHHHHHHH
Confidence 678888999999999999999998 766665433
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.94 E-value=0.014 Score=55.54 Aligned_cols=59 Identities=24% Similarity=0.412 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSL 45 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsL 45 (126)
|+.||-++|||++ -+....||+|..||++|+.+-|++- +||++|
T Consensus 234 i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 234 IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 6899999999998 4556789999999999999999875 899999
Q ss_pred HHhhcCchhHHHHHH
Q 033160 46 EVAAKAPELHMEIHK 60 (126)
Q Consensus 46 e~a~KAPelH~ei~k 60 (126)
++--.-|+-+-.+-.
T Consensus 314 ~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLAN 328 (966)
T ss_pred hcCCCchHHHhHHHH
Confidence 887666666655543
No 21
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.018 Score=52.51 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh---hcCchhHHH
Q 033160 3 LDAISKLEEALM--------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA---AKAPELHME 57 (126)
Q Consensus 3 ~dAisKleeAL~--------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a---~KAPelH~e 57 (126)
.|+|+=||.+|. -.|-|.+++|.++|++||.+||.|+-=++-|+.- ++-|.--.|
T Consensus 455 ~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~DATdE 526 (564)
T KOG1174|consen 455 KDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDESDATDE 526 (564)
T ss_pred chHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCCCcccc
Confidence 589999999999 5789999999999999999999999888887544 344544444
No 22
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.88 E-value=0.044 Score=34.10 Aligned_cols=43 Identities=19% Similarity=0.125 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
+.|+.-+|.+|. -...+.|++|.++|+++++.+|++..-....
T Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 12 EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 455556666665 5566788899999999999999887665544
No 23
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.75 E-value=0.051 Score=39.42 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIH 59 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~ 59 (126)
-.-++.|++|.++|++|++.+|+|- .|++++++.-..|+.|..+=
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3445667888888888888888876 56666666666666665443
No 24
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=95.64 E-value=0.067 Score=36.45 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
++.||.-+.+|+. .+|..+|..|.++|.+++.-+| |+.-|..|
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~-~~~~k~~l 52 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYET-DAQRKEAL 52 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHH
Confidence 5778888888888 8999999999999999999996 55445444
No 25
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.49 E-value=0.019 Score=27.94 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~N 38 (126)
-.-.+.|++|..+|++++.++|++
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 11 YLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHhhHHHHHHHHHHHHccCCCC
Confidence 345688999999999999999974
No 26
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.49 E-value=0.091 Score=40.99 Aligned_cols=44 Identities=9% Similarity=0.147 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIH 59 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~ 59 (126)
.+++..|++|.+||.+|+-++|||. .++.+++.|...||. .+|+
T Consensus 79 ~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~-~~l~ 143 (157)
T PRK15363 79 CQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEH-QILR 143 (157)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhH-HHHH
Confidence 8999999999999999999999887 677777888655554 3443
No 27
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=95.44 E-value=0.13 Score=35.35 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH---HHHHHH-HHhhcCchhHHHH
Q 033160 1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE---LYQKSL-EVAAKAPELHMEI 58 (126)
Q Consensus 1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne---~YkKsL-e~a~KAPelH~ei 58 (126)
+.+.|+.=+..|.. .+|+.+|.+|.++|.+++..+||.. .|+.-. +.-..|=+|...|
T Consensus 2 ~~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l 70 (77)
T cd02683 2 LELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRL 70 (77)
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888887 9999999999999999999999554 333322 3334555555444
No 28
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.41 E-value=0.034 Score=34.22 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|+++|. -...+.+++|..+|+++++.+|+|+
T Consensus 14 ~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 14 DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567888888877 4566789999999999999999985
No 29
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.33 E-value=0.036 Score=42.63 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 47 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~ 47 (126)
.++++..|+.+|. -.+.+.|++|.++|++|+..+|+|.-..-.+-.
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3678888998888 457788999999999999999999876666543
No 30
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.02 E-value=0.032 Score=34.25 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
.+.|++|.++|+++++.+|+|.-.+-.|
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l 31 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLL 31 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 4689999999999999999998544433
No 31
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.96 E-value=0.19 Score=28.78 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+.+++|.++|+++++..|++.
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 47 LGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHHHHhCCCcch
Confidence 3566777777777777777665
No 32
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.95 E-value=0.25 Score=33.60 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 12 ALMDEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 12 AL~~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
|..-...+.|++|.++|++++..+|+|.
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 51 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYDPYNS 51 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCcH
Confidence 3334455667778888888888888775
No 33
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.76 E-value=0.1 Score=37.86 Aligned_cols=27 Identities=30% Similarity=0.566 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELY 41 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~Y 41 (126)
.+|+.+|++|..+|++++..+|+|..+
T Consensus 130 ~~A~~~~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 130 EIAEAWFDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence 677888999999999999999987643
No 34
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.61 E-value=0.095 Score=45.66 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|++||. -..++.|++|..||++|++++|+|.
T Consensus 382 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 456666666666 2334568888888999999998875
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.38 E-value=0.079 Score=44.21 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
--..+.|++|.++|+++++.+|+++.|.
T Consensus 338 ~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 338 LMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 3344569999999999999999999654
No 36
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.30 E-value=0.17 Score=44.09 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM----------------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~----------------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+++|+.-|+.||. -+..+.|++|.++|++|+.++|+|.
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 3567777777776 0124788999999999999999998
No 37
>PRK11189 lipoprotein NlpI; Provisional
Probab=94.24 E-value=0.09 Score=42.18 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|++||. -...+.|++|.++|++|++++|+|.
T Consensus 81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 466777777776 3345667888888888888888887
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.18 E-value=0.13 Score=42.91 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
.++|+.-|+.||. -..++.|++|..+|++|+.++|+|...+.-+..+
T Consensus 52 ~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 52 FTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3578888888887 4456778999999999999999999777766555
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.13 Score=47.16 Aligned_cols=36 Identities=19% Similarity=0.473 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhc
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAK 50 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~K 50 (126)
--.+.-|+||..|||+||.+||.-- .||.+++|+..
T Consensus 340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence 4567779999999999999999643 89999988754
No 40
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.88 E-value=0.042 Score=31.90 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=17.4
Q ss_pred HHHHHHhcCCCcHHHHHHHHH
Q 033160 27 YFQQAVDEEPSNELYQKSLEV 47 (126)
Q Consensus 27 ~FqkAvd~dP~Ne~YkKsLe~ 47 (126)
||+||+++||+|-...-+|-.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~ 21 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLAN 21 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHH
Confidence 799999999999877666643
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=93.68 E-value=0.19 Score=34.83 Aligned_cols=38 Identities=26% Similarity=0.206 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
++|+..+++++. -...+.|++|.++|+++++.+|++..
T Consensus 48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 100 (234)
T TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD 100 (234)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 567777777776 22345678899999999999888764
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=93.66 E-value=0.15 Score=39.46 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 46 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe 46 (126)
....+.+++|.++|++||+.+|+|+..+.+|=
T Consensus 156 ~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34556789999999999999999998888773
No 43
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.49 E-value=0.16 Score=32.17 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 033160 18 KEYFNKATLYFQQAVD 33 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd 33 (126)
.+.|++|.++|+||++
T Consensus 59 ~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 59 LGDYEEALEYYQKALD 74 (78)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 3445555555555554
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.18 Score=46.95 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcC
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA 51 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KA 51 (126)
-++||.-++.||. .--+++||+|.++|.|||-++|+|++=...|.+|-..
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 4677888888887 4557889999999999999999997666666555443
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=93.33 E-value=0.37 Score=42.08 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhcCCCcH
Q 033160 21 FNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 21 f~kA~~~FqkAvd~dP~Ne 39 (126)
+++|..+|++|+++||+|.
T Consensus 320 ~~~A~~~~~~Al~ldP~~~ 338 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNP 338 (553)
T ss_pred HHHHHHHHHHHHhcCCCCH
Confidence 5677777777777777765
No 46
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=93.29 E-value=0.2 Score=34.80 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033160 1 MILDAISKLEEALMDEAKEYFNKATLYFQQAVD 33 (126)
Q Consensus 1 Mi~dAisKleeAL~~~A~~~f~kA~~~FqkAvd 33 (126)
|++.||.=+..|+...=.++|++|.++|.+||+
T Consensus 2 ~l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 2 DLERAHFLVTQAFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred CHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHH
Confidence 578899999999984334444444444444443
No 47
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=93.22 E-value=0.31 Score=33.99 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
.++|.+=+-.|.. .+|.-+|.+|.+.+.|++...||+.+
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 4677777777877 88999999999999999999888774
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=93.15 E-value=0.24 Score=43.19 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+|+.-+++||. ....+.|++|..+|++|++++|+|.
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 372 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA 372 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 456666777776 2334568888888888888888876
No 49
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.01 E-value=0.094 Score=48.44 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
..-||+|.+||+.||-.+|+|+
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~ 464 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDY 464 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchH
Confidence 3569999999999999999998
No 50
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=92.93 E-value=0.58 Score=32.03 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+++.|++=+.+|+. .+|.++|..|.++|..++.-|+|..
T Consensus 2 ~l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~ 47 (75)
T cd02677 2 YLEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPE 47 (75)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence 46788888888888 7888888888888888888886543
No 51
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.82 Score=40.85 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHhhcCchhHHHHHHhccc
Q 033160 2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLEVAAKAPELHMEIHKHGLG 64 (126)
Q Consensus 2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne-----~YkKsLe~a~KAPelH~ei~kq~~~ 64 (126)
+|.||+-...|.. .+|..+|.-|.+||..||.-|-.|+ .--|.+|--+.|-+|-.-|..-..+
T Consensus 7 l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL~~~~~~ 81 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYLKEKEKG 81 (439)
T ss_pred HHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4666766666666 8899999999999999999998887 3445667777888887777765543
No 52
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.50 E-value=1.8 Score=34.18 Aligned_cols=82 Identities=21% Similarity=0.273 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHHHHhccc
Q 033160 2 ILDAISKLEEALM-----------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLG 64 (126)
Q Consensus 2 i~dAisKleeAL~-----------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei~kq~~~ 64 (126)
|++.|.=||+-+. .-=+..|++|..|-.-.|+.||+|.-=+.-=++ +..+|.|-|+-
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~------ied~itkegli 124 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET------IEDKITKEGLI 124 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH------HHHHHhhccee
Confidence 5677888888885 223467899999999999999999743221121 23456666641
Q ss_pred ccccCCCCCCCCCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHhhhcC
Q 033160 65 QQTMGASTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSH 116 (126)
Q Consensus 65 qq~~~~~~~g~~~~s~~k~~kkkk~sDf~YDv~GWviLa~givaWvg~Aks~ 116 (126)
-..+ ++|=+.-++|||+|.+++.++
T Consensus 125 Gm~v---------------------------~gGa~~~v~gl~g~~~~~~~~ 149 (149)
T KOG3364|consen 125 GMVV---------------------------VGGAALAVGGLAGIASLAMRR 149 (149)
T ss_pred eeee---------------------------hhhHHHHHHHHHHHHHHHhcC
Confidence 1110 233344455699999998753
No 53
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.42 E-value=0.18 Score=32.64 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNELYQKSLE 46 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe 46 (126)
+..|++|..|-..+|+.||+|.-.+.-.+
T Consensus 14 l~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 14 LGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp TT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 45789999999999999999986654433
No 54
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.36 E-value=0.079 Score=30.54 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHH--HhcCCCc
Q 033160 16 EAKEYFNKATLYFQQA--VDEEPSN 38 (126)
Q Consensus 16 ~A~~~f~kA~~~FqkA--vd~dP~N 38 (126)
...+.|++|.+||++| +..+|++
T Consensus 10 ~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 10 RQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred HHcCCHHHHHHHHHHHHHhcccccC
Confidence 4567899999999994 4555554
No 55
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=92.26 E-value=0.48 Score=30.70 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
-...+.|++|..+|++++..+|++.
T Consensus 49 ~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 49 YYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHhhccHHHHHHHHHHHHHHCCCCC
Confidence 6667789999999999999999874
No 56
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.09 E-value=0.35 Score=45.91 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~N 38 (126)
++|+.-|++||. -...+.|++|.++|++|++.+|+|
T Consensus 286 ~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 456666666665 223344566666666666666654
No 57
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=91.90 E-value=0.2 Score=44.55 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNELY 41 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~Y 41 (126)
...+++|.++|++|+.++|.+++|
T Consensus 466 ~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 466 KGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cCCHHHHHHHHHHHHhcCCCCchH
Confidence 334556666666666666665544
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=91.62 E-value=0.46 Score=38.13 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM-------------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~-------------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.+|..|.++|. -.....+++|..+|++|++.+|+|.
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~ 98 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA 98 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 456777777774 2334556789999999999999985
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.56 E-value=0.22 Score=46.49 Aligned_cols=37 Identities=30% Similarity=0.361 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.||--|+.|+. ..+.+-||+|..||++||..||.+=
T Consensus 438 ~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 438 DTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 356777777776 6678888888888888888888764
No 60
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=91.55 E-value=1.2 Score=30.74 Aligned_cols=38 Identities=24% Similarity=0.165 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++||.=+..|.. .+|..+|.+|.++|.+++..+=.|+
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~ 47 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLND 47 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3567777788887 8999999999999999977773344
No 61
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.52 E-value=0.91 Score=25.86 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 033160 17 AKEYFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~ 37 (126)
..+.+++|..+|+++++.+|+
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHhHHHHHHHHHHHHccCCC
Confidence 345577888888888887774
No 62
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=91.29 E-value=0.12 Score=47.64 Aligned_cols=35 Identities=46% Similarity=0.598 Sum_probs=31.1
Q ss_pred ccccccCCCcchhhhhHHHHHHHHHHHHHhhhcCC
Q 033160 83 TSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHM 117 (126)
Q Consensus 83 ~~kkkk~sDf~YDv~GWviLa~givaWvg~Aks~~ 117 (126)
..||||+||=+|-|.|=||-++.+|+++|||-.-+
T Consensus 501 ~~~~~~~~~n~ykiagg~~~gla~~~~~g~~y~f~ 535 (576)
T PTZ00441 501 EDKKKKSSNNGYKIAGGVIAGLALVGCVGFAYNFV 535 (576)
T ss_pred ccccCcCCCCCceeecchhhhHHHhhhhhhheeee
Confidence 45777889999999999999999999999998544
No 63
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=91.17 E-value=0.4 Score=36.87 Aligned_cols=19 Identities=5% Similarity=0.058 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcCCCcH
Q 033160 21 FNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 21 f~kA~~~FqkAvd~dP~Ne 39 (126)
+++|.++|++|+..||+|-
T Consensus 126 ~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 126 TPQTREMIDKALALDANEV 144 (198)
T ss_pred cHHHHHHHHHHHHhCCCCh
Confidence 4666666666666666653
No 64
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=91.13 E-value=0.54 Score=30.42 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 9 LEEALMDEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 9 leeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+..+..-...+.|++|.++|++++..+|++.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 36 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKST 36 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 3344445567889999999999999999873
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=91.03 E-value=1 Score=33.66 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQKSLE 46 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe 46 (126)
+.+++|.+.|+++++.+|+|..+...+.
T Consensus 129 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 129 TAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 6789999999999999999987776663
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=90.90 E-value=0.62 Score=38.90 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHH--HHHhcCCCcHHHHHHHHHhh--cCchhHHHHHHhccc
Q 033160 17 AKEYFNKATLYFQ--QAVDEEPSNELYQKSLEVAA--KAPELHMEIHKHGLG 64 (126)
Q Consensus 17 A~~~f~kA~~~Fq--kAvd~dP~Ne~YkKsLe~a~--KAPelH~ei~kq~~~ 64 (126)
-.+.|++|.+||+ ++++.+|+++.|.---++.. ..++--.++-+++++
T Consensus 347 ~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 347 KHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456889999999 69999999998774444442 334444555555543
No 67
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.83 E-value=1.3 Score=35.89 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+++..+++|..=|+.||.+||+.-
T Consensus 45 ~es~~miedAisK~eeAL~I~P~~h 69 (186)
T PF06552_consen 45 PESKKMIEDAISKFEEALKINPNKH 69 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred chHHHHHHHHHHHHHHHHhcCCchH
Confidence 6899999999999999999999874
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=90.70 E-value=0.55 Score=43.52 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 16 EAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 16 ~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++.-|++|.++|++++..+|+++
T Consensus 165 ~~~g~~~~A~~~y~~~~~~~p~~~ 188 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQHPEFE 188 (694)
T ss_pred HHhcchHHHHHHHHHHHhcCCCcH
Confidence 344456666666666666666554
No 69
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.53 E-value=0.76 Score=24.41 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 033160 11 EALMDEAKEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 11 eAL~~~A~~~f~kA~~~FqkAvd~dP~N 38 (126)
-|..-...+.+++|.++|++.++.-|++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3344445678999999999999999974
No 70
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=90.49 E-value=0.45 Score=45.18 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
.++|+..|++||. ..+.+.|++|.++|++|++.+|+|..-.
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~ 422 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV 422 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3578888888887 4455678999999999999999997433
No 71
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.37 E-value=0.47 Score=43.16 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+|.+|.+||..|+.+||+|-
T Consensus 263 G~y~~A~E~Yteal~idP~n~ 283 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNK 283 (486)
T ss_pred cchhHHHHHHHHhhcCCcccc
Confidence 467889999999999999886
No 72
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=89.94 E-value=0.78 Score=33.52 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNELY 41 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~Y 41 (126)
+.|++|..+|++|++.+|+|...
T Consensus 86 g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 86 GEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred CCHHHHHHHHHHHHHhCcccHHH
Confidence 34566666666666666665533
No 73
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=89.65 E-value=0.89 Score=32.90 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 033160 15 DEAKEYFNKATLYFQQAVDEEP 36 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP 36 (126)
...++.|++|..+|++|+.+.|
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~ 66 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEI 66 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccc
Confidence 3334444455555555544433
No 74
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=89.36 E-value=0.74 Score=34.37 Aligned_cols=38 Identities=13% Similarity=0.041 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 3 LDAISKLEEALM------------------DEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 3 ~dAisKleeAL~------------------~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
++|+..|++++. -...+.|++|..+|+++++.+|+|..
T Consensus 50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 466777776665 23345788888888999888887773
No 75
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.28 E-value=0.53 Score=29.71 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 033160 17 AKEYFNKATLYFQQAVDE 34 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~ 34 (126)
-+..|++|.+||++|+++
T Consensus 17 ~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 17 ELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HTT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 345567777777777654
No 76
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=88.90 E-value=0.94 Score=43.60 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhcCCCcH
Q 033160 21 FNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 21 f~kA~~~FqkAvd~dP~Ne 39 (126)
|++|.++|++|++.+|+|.
T Consensus 659 ~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 659 IAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHHHHHHHHHHHhCCCCH
Confidence 4444444444444444444
No 77
>PRK15331 chaperone protein SicA; Provisional
Probab=88.89 E-value=1.5 Score=34.57 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH--------HH---------HHHHHHhhcCchhHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE--------LY---------QKSLEVAAKAPELHMEIHK 60 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne--------~Y---------kKsLe~a~KAPelH~ei~k 60 (126)
.+.+..|++|.++|-.|..++++|. +| +++++++..-|+ |.+|..
T Consensus 81 ~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~~~-~~~l~~ 142 (165)
T PRK15331 81 CQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNERTE-DESLRA 142 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhCcc-hHHHHH
Confidence 7899999999999999999999886 33 567788877788 556655
No 78
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.69 E-value=0.41 Score=41.28 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
.-..+.|++|.++|-+|++++|.|-.|-
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyy 118 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYY 118 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHH
Confidence 3456789999999999999999999664
No 79
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=88.24 E-value=1.2 Score=27.44 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+.|++|.+|+++++.++|++.
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~ 29 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDP 29 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccc
Confidence 4678999999999999999987
No 80
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=87.45 E-value=1.3 Score=40.29 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKS 44 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKs 44 (126)
.++|+.-|++++. ....+.+++|.++|++|++++|+|..+.-.
T Consensus 375 ~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 375 LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 4678888888777 445567999999999999999999543333
No 81
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=87.40 E-value=1.2 Score=37.37 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQK 43 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~YkK 43 (126)
+.|++|.++|++|++.+|+|....-
T Consensus 851 g~~~~A~~~~~~a~~~~~~~~~~~~ 875 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPEAAAIRY 875 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHH
Confidence 4566777777777777776554333
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.27 E-value=1.2 Score=41.02 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE----LYQKSLEV 47 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne----~YkKsLe~ 47 (126)
..++..|++|.++|++|++.||+|. .|+++++.
T Consensus 436 l~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 436 LRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 7888999999999999999999997 66777653
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.26 E-value=0.83 Score=42.11 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh----------cCchhHHHHHHh
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA----------KAPELHMEIHKH 61 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~----------KAPelH~ei~kq 61 (126)
...++.|++|..-|.+.|+.||+|+.-+..|.-+. .-|++|+.+-.+
T Consensus 80 ~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 80 LFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL 136 (539)
T ss_pred HHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence 67889999999999999999999997777774332 236667665543
No 84
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=87.25 E-value=1.3 Score=35.29 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHH--------HH----------HHHHHHHHHHHHHHHHhcCCCcH-----HHHHHH
Q 033160 3 LDAISKLEEALM--------DE----------AKEYFNKATLYFQQAVDEEPSNE-----LYQKSL 45 (126)
Q Consensus 3 ~dAisKleeAL~--------~~----------A~~~f~kA~~~FqkAvd~dP~Ne-----~YkKsL 45 (126)
++|+.-||+.+. .. ..+.|++|..+|++.++..|+|+ .|++.+
T Consensus 49 ~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 49 KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 467777777766 22 23457888888888888888887 666654
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=87.03 E-value=1.3 Score=39.91 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 49 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~ 49 (126)
.++.+++|...|+.-++.+|+|-.|-..|+.+.
T Consensus 50 kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 50 KLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 346689999999999999999999999999887
No 86
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=86.87 E-value=2.3 Score=26.99 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 033160 3 LDAISKLEEALM---------DEAKEYFNKATLYFQQAV 32 (126)
Q Consensus 3 ~dAisKleeAL~---------~~A~~~f~kA~~~FqkAv 32 (126)
++++.+||+.+. +++...|++|....++|-
T Consensus 2 Ee~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~ 40 (53)
T PF02609_consen 2 EEAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQ 40 (53)
T ss_dssp HHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 578888998888 899999999999888774
No 87
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=86.63 E-value=1.7 Score=41.97 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQKS 44 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~YkKs 44 (126)
+.+++|..+|++|++.+|+|..+..+
T Consensus 623 G~~deA~~~l~~AL~l~Pd~~~a~~n 648 (987)
T PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQAA 648 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34566666666666666666643333
No 88
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=86.40 E-value=2.4 Score=38.71 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---HHHHHHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---LYQKSLEV 47 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---~YkKsLe~ 47 (126)
.+|+.-|++||. ....+.|++|...+++++..+|+|. .|++.+++
T Consensus 410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~~~ 472 (765)
T PRK10049 410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARARDV 472 (765)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 567777887777 5566689999999999999999998 44455543
No 89
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=86.02 E-value=2.8 Score=32.52 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
-..++.+++|..+|++++..+|+|.....++
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~ 254 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAY 254 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred hcccccccccccccccccccccccccccccc
Confidence 4556778899999999999999888655554
No 90
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=85.99 E-value=1 Score=31.57 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH------HHHHHHHHh
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE------LYQKSLEVA 48 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne------~YkKsLe~a 48 (126)
+.+|++|.+|-.|||..|=... .|+|.+++=
T Consensus 2 k~~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 2 RGYYKQAFEEISKALRADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred chHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence 4689999999999998776543 788877543
No 91
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=85.89 E-value=2.3 Score=33.65 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
+.+++|..+|+++++.+|++..|..-+...
T Consensus 296 g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 296 EGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 457788888888888888887777555443
No 92
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=85.16 E-value=2.8 Score=29.00 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 16 EAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 16 ~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
...+.+++|..+|+++++.+|++.
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~ 169 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRP 169 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCh
Confidence 344567788888888888888764
No 93
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.84 E-value=1.3 Score=38.21 Aligned_cols=32 Identities=22% Similarity=0.568 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 033160 12 ALMDEAKEYFNKATLYFQQAVDEEPSNELYQK 43 (126)
Q Consensus 12 AL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkK 43 (126)
|+.-||.+++++|.+||..-|+.||.|..-+|
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K 124 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRK 124 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccCcchhHHHH
Confidence 45579999999999999999999999985443
No 94
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=84.37 E-value=1.2 Score=40.10 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++.|++|..+|++|++++|++.
T Consensus 87 ~lGryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 87 SKGRVKDALAQFETALELNPNPD 109 (453)
T ss_pred HcCCHHHHHHHHHHHHhhCCCch
Confidence 34556666666666666666654
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.45 E-value=1.5 Score=37.10 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhcCCCcH
Q 033160 20 YFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne 39 (126)
..+.|.+.|+||+.++|+|.
T Consensus 84 e~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 84 ENDLADESYRKALSLAPNNG 103 (250)
T ss_pred ChhhHHHHHHHHHhcCCCcc
Confidence 34555666666666666655
No 96
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.41 E-value=1.7 Score=40.83 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+++...|+|.++|.+|+.+||.|.
T Consensus 533 ~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 533 QHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred HHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 7788889999999999999999998
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=83.06 E-value=3.2 Score=38.61 Aligned_cols=31 Identities=3% Similarity=-0.186 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
-..+++|++|..+++++|+.+|+|-.....+
T Consensus 130 L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 130 VKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred HHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 4567889999999999999999998444333
No 98
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=82.88 E-value=3.9 Score=27.55 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM---------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 2 i~dAisKleeAL~---------~~A~~~f~kA~~~FqkA 31 (126)
.++|+++||+-+. +++...|+++..+.+.|
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c 41 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDLALEEALNLFERGMALARRC 41 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4788999999888 89999999998887766
No 99
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=82.81 E-value=2.1 Score=38.65 Aligned_cols=47 Identities=30% Similarity=0.390 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHH-----HH-------------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchh
Q 033160 2 ILDAISKLEEALM-----DE-------------AKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL 54 (126)
Q Consensus 2 i~dAisKleeAL~-----~~-------------A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPel 54 (126)
.++|++-++.||. .+ .++.+++|.+||++|+++. |..|. .....|++
T Consensus 91 yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~~f~----~i~~DpdL 155 (453)
T PLN03098 91 VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NLKFS----TILNDPDL 155 (453)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--chhHH----HHHhCcch
Confidence 4789999999988 32 2566899999999999983 66675 23456654
No 100
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=82.45 E-value=2.9 Score=37.73 Aligned_cols=23 Identities=13% Similarity=-0.021 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
.+.+++|.++|++|+..+|+|..
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~ 145 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQ 145 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHH
Confidence 34456666666666666666653
No 101
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=82.41 E-value=1.5 Score=28.31 Aligned_cols=20 Identities=20% Similarity=0.609 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhcCCCc
Q 033160 19 EYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~N 38 (126)
+.|++|..+|+|+++.+|+|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~ 22 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTN 22 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGT
T ss_pred ccHHHHHHHHHHHHHHCCCC
Confidence 46899999999999999964
No 102
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=82.29 E-value=3.3 Score=34.76 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+.+++|..+|+++++.+|+|.
T Consensus 648 ~~~~~~A~~~~~~~~~~~~~~~ 669 (899)
T TIGR02917 648 MKNYAKAITSLKRALELKPDNT 669 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCCH
Confidence 4456777777777777777754
No 103
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.89 E-value=2.4 Score=34.66 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
.+..|++|..+|+++++..|++..
T Consensus 192 ~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 192 NKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcc
Confidence 345567777777777777777653
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=81.49 E-value=4.7 Score=36.74 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcC
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA 51 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KA 51 (126)
+-+.||.|..-||+|++.||+|.--|.-||-|.+.
T Consensus 353 ~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrl 387 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELNESNTRAREGLERAKRL 387 (504)
T ss_pred hhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 34789999999999999999999777777666543
No 105
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=80.94 E-value=3 Score=37.58 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
+.|++|..+|++|++.+|+|....
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 456777777777777777776433
No 106
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=80.83 E-value=4.9 Score=27.96 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM---------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 2 i~dAisKleeAL~---------~~A~~~f~kA~~~FqkA 31 (126)
.++|+.+||+.+. +++...|+++....+.|
T Consensus 12 fEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C 50 (80)
T PRK00977 12 FEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQC 50 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4688889998887 88888888888877766
No 107
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.42 E-value=3.6 Score=34.79 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHH
Q 033160 8 KLEEALMDEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHME 57 (126)
Q Consensus 8 KleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~e 57 (126)
+|+=||.=-..+.+..|+.-+.|||+.||++. .|||+|.++-+.-++|-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence 44444442233445677888888888888876 788888888777777654
No 108
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=80.11 E-value=6.5 Score=27.56 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE-LYQKSLEV 47 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne-~YkKsLe~ 47 (126)
....+.|++|..+.++++..||-|| .|+.-++.
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~ 105 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALDPYDEEAYRLLMRA 105 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3455679999999999999999999 45444443
No 109
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=79.66 E-value=5 Score=34.24 Aligned_cols=44 Identities=23% Similarity=0.141 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
.++-|.+||.-|. --..+.|+.|..-|.+|+.++|+|.-+.-.+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~ 196 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGL 196 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3577889999888 5678899999999999999999999766655
No 110
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=78.82 E-value=5.8 Score=37.26 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
-.=++.|++|..||||||.+.|.|-.+.-++
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asi 495 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASI 495 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHH
Confidence 3446789999999999999999998554444
No 111
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=78.50 E-value=10 Score=26.51 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
.+|+..|++....|.+-+..+|+.++
T Consensus 113 ~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 113 AEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 89999999999999999999998773
No 112
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=78.48 E-value=2.7 Score=40.89 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
-..++.+++|.+||.|+|+++|+|--=|.+|
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~L 489 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITL 489 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhH
Confidence 5678999999999999999999998555554
No 113
>PLN02789 farnesyltranstransferase
Probab=78.40 E-value=4.7 Score=33.79 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
..+.|++|.+||.+++++||.|.
T Consensus 154 ~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 154 TLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred HhhhHHHHHHHHHHHHHHCCCch
Confidence 33446677777777777777775
No 114
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=78.36 E-value=3 Score=37.54 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.+|+--|..|+...--..-+||...|..|+.++|+|.
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p 150 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP 150 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH
Confidence 34566666666665555566777777777777777765
No 115
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.04 E-value=1.4 Score=40.01 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHH
Q 033160 20 YFNKATLYFQQAVDEEPSNELYQK 43 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne~YkK 43 (126)
.|+||.+||-++.+.+|.|..|..
T Consensus 112 Ky~EAIDCYs~~ia~~P~NpV~~~ 135 (536)
T KOG4648|consen 112 KYEEAIDCYSTAIAVYPHNPVYHI 135 (536)
T ss_pred chhHHHHHhhhhhccCCCCccchh
Confidence 368999999999999999985543
No 116
>PRK14574 hmsH outer membrane protein; Provisional
Probab=78.01 E-value=4.7 Score=38.30 Aligned_cols=41 Identities=24% Similarity=0.202 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcCCCcHHH--------------HHHHHHhhcCchhHHHHHH
Q 033160 20 YFNKATLYFQQAVDEEPSNELY--------------QKSLEVAAKAPELHMEIHK 60 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne~Y--------------kKsLe~a~KAPelH~ei~k 60 (126)
.+.+|.+.|+++++.+|+|+-| ..+|+++.+-|++-...++
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~ 238 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHY 238 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHH
Confidence 3445999999999999999954 3455777777766544443
No 117
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=77.18 E-value=2.1 Score=38.17 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhcCCCcH
Q 033160 20 YFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+++|.+||++|+++||+|-
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a 376 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFT 376 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcH
Confidence 37899999999999999985
No 118
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.93 E-value=7.4 Score=33.19 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHhhcCch
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELYQKSL-EVAAKAPE 53 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL-e~a~KAPe 53 (126)
-.++|++|.+=|+|.++.||.+.--|+.. ++..++-|
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 34679999999999999999988665554 44444433
No 119
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=76.06 E-value=7.1 Score=32.15 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh----hcCchhHHHHHHhc
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA----AKAPELHMEIHKHG 62 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a----~KAPelH~ei~kq~ 62 (126)
.-..++|++|.+..++|++.||+|..-.-||=++ .|.++-..+.-.|+
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 6677899999999999999999999777777433 55555555554444
No 120
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=75.76 E-value=8.1 Score=34.54 Aligned_cols=53 Identities=23% Similarity=0.154 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh-hcCchh---HHHHHHhcccccc
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA-AKAPEL---HMEIHKHGLGQQT 67 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a-~KAPel---H~ei~kq~~~qq~ 67 (126)
-.+++-|+.|..-||||+.++|+|--=+.-|..+ .|.-+. -.++.+.+++.-.
T Consensus 301 ~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 301 LLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4567789999999999999999997555555333 332222 2445556665543
No 121
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=75.16 E-value=12 Score=29.55 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCc
Q 033160 18 KEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~N 38 (126)
.+.|++|.++|+++++.+|+|
T Consensus 227 ~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 227 QGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred CCCHHHHHHHHHHHHHHChhh
Confidence 445555555555555555554
No 122
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=74.61 E-value=2.6 Score=27.25 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhcCCCc
Q 033160 20 YFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~N 38 (126)
|+++|..+.++|++.|=.+
T Consensus 1 y~~~A~~~~~~Av~~D~~g 19 (69)
T PF04212_consen 1 YLDKAIELIKKAVEADEAG 19 (69)
T ss_dssp -HHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCC
Confidence 5778888888888887644
No 123
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.30 E-value=3.2 Score=38.74 Aligned_cols=44 Identities=30% Similarity=0.402 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhcCCCcH--------------HHHHHHHHhhcCchhHHHHHHhcc
Q 033160 20 YFNKATLYFQQAVDEEPSNE--------------LYQKSLEVAAKAPELHMEIHKHGL 63 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne--------------~YkKsLe~a~KAPelH~ei~kq~~ 63 (126)
.|++|.+||++|+++.|+.. -.++-.|.+.||=||-..--|-++
T Consensus 130 kY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~ 187 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALL 187 (606)
T ss_pred cHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHH
Confidence 46999999999999999843 235666899999888776666553
No 124
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=73.27 E-value=4 Score=26.66 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHME 57 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~e 57 (126)
.+|++|.++.++|++.|= +..|..+|++-.+|=|+-+.
T Consensus 3 ~~~~~A~~li~~Av~~d~-~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 3 DYLSKAKELISKALKADE-AGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred cHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999887 44566666666555554443
No 125
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=73.24 E-value=1.8 Score=30.43 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=12.8
Q ss_pred cCCCcchhhhhHHHH
Q 033160 88 KSSDLKYDIFGWVIL 102 (126)
Q Consensus 88 k~sDf~YDv~GWviL 102 (126)
--++|-|||++|+|+
T Consensus 36 y~t~l~~DvL~~~ll 50 (77)
T PF11732_consen 36 YFTDLGYDVLTFCLL 50 (77)
T ss_pred hcchhhHHHHHHHHH
Confidence 357899999999986
No 126
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=72.87 E-value=5.7 Score=31.14 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 16 EAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 16 ~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
...+.|++|.++|+++++.+|+|.
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~ 148 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDA 148 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCc
Confidence 344557888888888888888875
No 127
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=72.32 E-value=3.4 Score=27.28 Aligned_cols=13 Identities=38% Similarity=1.204 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhh
Q 033160 101 ILAVGIVAWVGFA 113 (126)
Q Consensus 101 iLa~givaWvg~A 113 (126)
+..+||++|+||.
T Consensus 12 vIil~If~~iGl~ 24 (49)
T PF11044_consen 12 VIILGIFAWIGLS 24 (49)
T ss_pred HHHHHHHHHHHHH
Confidence 4457899999985
No 128
>PLN02789 farnesyltranstransferase
Probab=72.00 E-value=9.4 Score=32.00 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCCcH
Q 033160 22 NKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 22 ~kA~~~FqkAvd~dP~Ne 39 (126)
+++.+|+.+|+++||+|-
T Consensus 125 ~~el~~~~kal~~dpkNy 142 (320)
T PLN02789 125 NKELEFTRKILSLDAKNY 142 (320)
T ss_pred HHHHHHHHHHHHhCcccH
Confidence 667888888888888874
No 129
>PRK14574 hmsH outer membrane protein; Provisional
Probab=71.96 E-value=6.1 Score=37.52 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
..|++|.+.|+++++.||+|.-+.
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l 139 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLI 139 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHH
Confidence 568899999999999999987444
No 130
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.72 E-value=3.3 Score=40.12 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQKSLEVAAK 50 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~K 50 (126)
+-.+.|.+||+.|+.+||++-+-+..|-.-.|
T Consensus 164 ~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 164 GDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred CCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 34567888999999999988766555544333
No 131
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=71.45 E-value=18 Score=32.45 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH--HHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE--LYQK 43 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne--~YkK 43 (126)
++.|++|.++-.++|++||+|. +||+
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRr 297 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRR 297 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 4668899999999999999998 5554
No 132
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=71.19 E-value=11 Score=26.77 Aligned_cols=46 Identities=28% Similarity=0.291 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHHHHhc
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHG 62 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei~kq~ 62 (126)
||-|.+-|||..--...|++|.+++++| |+.+. +|...|.++-.+-
T Consensus 13 ~Ars~~~eAl~~a~~~~fe~A~~~l~~a------~~~l~-------~AH~~qt~llq~e 58 (96)
T PF02255_consen 13 DARSLAMEALKAAREGDFEEAEELLKEA------DEELL-------KAHKIQTELLQQE 58 (96)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH------HHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHHHH-------HHHHHHHHHHHHH
Confidence 6888888898855556677776666666 33332 5666677665544
No 133
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=70.60 E-value=4 Score=40.25 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
..++.+++||.++|+|+|..||.|=
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchh
Confidence 5688999999999999999999996
No 134
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.87 E-value=11 Score=36.49 Aligned_cols=48 Identities=27% Similarity=0.194 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 1 MILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 1 Mi~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
|..||---|-+||. --|+..-++|.+-|++|++++|+|..-..+|..-
T Consensus 657 ~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 657 LHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 56677777777776 4577788999999999999999999888888543
No 135
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.38 E-value=4.6 Score=36.85 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcH--------------HHHHHHHHhhcCchhHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE--------------LYQKSLEVAAKAPELHMEI 58 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne--------------~YkKsLe~a~KAPelH~ei 58 (126)
+.|+.|.+.|-||+++||+|- .|.-+|.=+.||+|+-...
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 468999999999999999765 5666666677777765433
No 136
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=68.87 E-value=2 Score=20.91 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=7.5
Q ss_pred HHHHHHHHHHH
Q 033160 18 KEYFNKATLYF 28 (126)
Q Consensus 18 ~~~f~kA~~~F 28 (126)
-.+|++|.+||
T Consensus 2 ~~~y~~Aa~~y 12 (12)
T PF02071_consen 2 IKCYEKAAECY 12 (12)
T ss_pred cHHHHHHHhhC
Confidence 45677777776
No 137
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=68.83 E-value=14 Score=29.39 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhc
Q 033160 19 EYFNKATLYFQQAVDE 34 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~ 34 (126)
+.+++|.++|++|++.
T Consensus 129 ~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAEL 144 (282)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3566677777777665
No 138
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=68.74 E-value=10 Score=34.79 Aligned_cols=75 Identities=28% Similarity=0.267 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHHHHhccccc
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQ 66 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei~kq~~~qq 66 (126)
+.||||--++||. ..+++-|++|.++|++|...+-+ +|.|..+-+--.+.+
T Consensus 303 l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--------------~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 303 LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--------------CEIRRTLREAQLALK 368 (486)
T ss_pred chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------cchHHHHHHHHHHHH
Confidence 3578888888877 78899999999999999877643 555555544333222
Q ss_pred ccCCCCCCCCCCCCccccccccCCCcchhhhhHHHHHH---HHHHHH
Q 033160 67 TMGASTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAV---GIVAWV 110 (126)
Q Consensus 67 ~~~~~~~g~~~~s~~k~~kkkk~sDf~YDv~GWviLa~---givaWv 110 (126)
.+|+| =||-++||.-++- ...+|-
T Consensus 369 ----------------kSkRk----d~ykilGi~~~as~~eikkayr 395 (486)
T KOG0550|consen 369 ----------------KSKRK----DWYKILGISRNASDDEIKKAYR 395 (486)
T ss_pred ----------------Hhhhh----hHHHHhhhhhhcccchhhhHHH
Confidence 12443 2899999988883 235663
No 139
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=68.63 E-value=16 Score=25.31 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM---------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 2 i~dAisKleeAL~---------~~A~~~f~kA~~~FqkA 31 (126)
.++|+.+||+-+. +++...|+++....+.|
T Consensus 6 fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C 44 (75)
T PRK14066 6 FETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFC 44 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567777777766 88888888888777665
No 140
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=68.41 E-value=12 Score=34.25 Aligned_cols=31 Identities=26% Similarity=0.151 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
.+++++..||.+-+..+|++||+|.-.||++
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 7889999999999999999999999888887
No 141
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=68.30 E-value=14 Score=35.38 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
...-.-|++|..||+.|+..+|||..--
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qil 112 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQIL 112 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 4555679999999999999999998433
No 142
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=67.91 E-value=17 Score=19.64 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 033160 15 DEAKEYFNKATLYFQQAVD 33 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd 33 (126)
++|+.+|++|.+.+++.+-
T Consensus 19 ~~A~~~~~~al~~~~~~~G 37 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLG 37 (42)
T ss_dssp HHHHHHHHHHHHHH-----
T ss_pred chhhHHHHHHHHHHHHHhc
Confidence 4555555555555555443
No 143
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=67.79 E-value=17 Score=25.14 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM---------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 2 i~dAisKleeAL~---------~~A~~~f~kA~~~FqkA 31 (126)
+++|+++||+-+. +++...|+++....++|
T Consensus 7 fEeal~~LE~Iv~~LE~~~l~Leesl~lyeeG~~L~k~C 45 (76)
T PRK14063 7 FEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLC 45 (76)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678888888777 88888888888877765
No 144
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=67.64 E-value=17 Score=25.10 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM---------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 2 i~dAisKleeAL~---------~~A~~~f~kA~~~FqkA 31 (126)
.++|+.+||+-+. +++...|+++....+.|
T Consensus 8 fEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c 46 (75)
T PRK14064 8 FEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLC 46 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4677888887776 78888888887776655
No 145
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.93 E-value=13 Score=33.37 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc-----CchhHHHHHHhc
Q 033160 2 ILDAISKLEEALM---------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK-----APELHMEIHKHG 62 (126)
Q Consensus 2 i~dAisKleeAL~---------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~K-----APelH~ei~kq~ 62 (126)
|.++...+|+++. .+-...|.+|..|| +. --|.+||+++.. -|+....|.+.-
T Consensus 495 L~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF-~~-------~~Y~~al~~~~~alE~vePG~~~ri~~~y 561 (569)
T PRK04778 495 LVENATLTEQLIQYANRYRSDNEEVAEALNEAERLF-RE-------YDYKAALEIIATALEKVEPGVTKRIEDSY 561 (569)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH-Hh-------CChHHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 3466677777776 77888899999999 54 459999999976 466666665544
No 146
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=66.47 E-value=15 Score=26.46 Aligned_cols=26 Identities=38% Similarity=0.293 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQ 29 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~Fq 29 (126)
+|-|.+=|||..--...|++|.++.+
T Consensus 16 ~Ars~~~eAl~~a~~gdfe~A~~~l~ 41 (99)
T TIGR00823 16 DARSKALEALKAAKAGDFAKARALVE 41 (99)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666666666333333444433333
No 147
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=66.29 E-value=18 Score=26.40 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM---------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 2 i~dAisKleeAL~---------~~A~~~f~kA~~~FqkA 31 (126)
.++|+.+||+-+. +++...|+++....+.|
T Consensus 10 FEeal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C 48 (95)
T PRK14069 10 FEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKIC 48 (95)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5788899998887 88888888888877766
No 148
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.19 E-value=11 Score=35.35 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 033160 18 KEYFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~ 37 (126)
.+-|++|.++|.+|.+++|+
T Consensus 475 qqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhHHHHHHHHHHHHhhccc
Confidence 47899999999999999999
No 149
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=65.90 E-value=9.9 Score=28.28 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHH-HHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNEL-YQKSL 45 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~-YkKsL 45 (126)
.++|.+|..-.+.|++.+|.|+. ++-.+
T Consensus 2 ~~nf~kAl~~L~~a~~~~~~~~~~~~~g~ 30 (123)
T TIGR01987 2 FESFEQALMQLSDANWFDLTNDITIIDGA 30 (123)
T ss_pred HHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 47899999999999999999997 88776
No 150
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=65.47 E-value=19 Score=25.20 Aligned_cols=30 Identities=10% Similarity=0.223 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM---------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 2 i~dAisKleeAL~---------~~A~~~f~kA~~~FqkA 31 (126)
+++|+.+||+-+. +++...|+++...-+.|
T Consensus 9 fEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C 47 (80)
T PRK14067 9 FEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARAC 47 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678888888887 78888888887776655
No 151
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=64.37 E-value=17 Score=26.42 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQA 31 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkA 31 (126)
||-|..=|||..--...|++|.++.++|
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA 46 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQS 46 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666666666633334444444444443
No 152
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.36 E-value=7.5 Score=19.95 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhcCCCcH
Q 033160 20 YFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+++|...|++++...|.+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~ 21 (33)
T smart00386 2 DIERARKIYERALEKFPKSV 21 (33)
T ss_pred cHHHHHHHHHHHHHHCCCCh
Confidence 47889999999999999665
No 153
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=64.29 E-value=7.1 Score=25.99 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchh
Q 033160 20 YFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL 54 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPel 54 (126)
++++|..++++|++.|= +..|..++++-..|=|+
T Consensus 2 ~~~~A~~l~~~Av~~D~-~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 2 FLQKAIELVKKAIEEDN-AGNYEEALRLYQHALEY 35 (75)
T ss_pred hHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 56788889999988886 44444444444444333
No 154
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=64.26 E-value=18 Score=30.30 Aligned_cols=34 Identities=6% Similarity=-0.074 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHh
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLEVA 48 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne-----~YkKsLe~a 48 (126)
-...+.+++|.+..+++++.+|||+ .++...++.
T Consensus 273 l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~ 311 (409)
T TIGR00540 273 LIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK 311 (409)
T ss_pred HHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC
Confidence 4455679999999999999999998 666666665
No 155
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=64.23 E-value=12 Score=31.71 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.-+.+.|.+|..-|+||+..+|+|-
T Consensus 110 ~~~~g~~~~A~~~~rkA~~l~p~d~ 134 (257)
T COG5010 110 QIRNGNFGEAVSVLRKAARLAPTDW 134 (257)
T ss_pred HHHhcchHHHHHHHHHHhccCCCCh
Confidence 4445556666666666666666554
No 156
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=63.78 E-value=23 Score=29.69 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
....+.+++|.+||++|.+.+|+|..|.
T Consensus 128 A~~~g~~~~A~~~l~~A~~~~~~~~~~~ 155 (398)
T PRK10747 128 AQQRGDEARANQHLERAAELADNDQLPV 155 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCcchHHH
Confidence 4667778999999999999999987554
No 157
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=63.65 E-value=13 Score=27.23 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 9 LEEALMDEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 9 leeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
||-|-........++|..+|++|++..++.+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~ 36 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGAD 36 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Confidence 45555556666677777777777776666553
No 158
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=63.35 E-value=9.6 Score=28.49 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhcCCC--------------cHHHHHHHHHhhc
Q 033160 19 EYFNKATLYFQQAVDEEPS--------------NELYQKSLEVAAK 50 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~--------------Ne~YkKsLe~a~K 50 (126)
-|+--|.+||.+|+.+.|+ +-.|+|++.-|.+
T Consensus 58 ~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 58 RYLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3556677888888888775 3366666665544
No 159
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=63.20 E-value=19 Score=25.85 Aligned_cols=28 Identities=32% Similarity=0.291 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQA 31 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkA 31 (126)
+|-|.+=|||..--...|++|.++.++|
T Consensus 14 ~Ars~~~eAl~~a~~g~fe~A~~~l~ea 41 (97)
T cd00215 14 NARSKALEALKAAKEGDFAEAEELLEEA 41 (97)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677777777744444455555554444
No 160
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=63.12 E-value=5.8 Score=23.73 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHH--HHHhcCCCc
Q 033160 17 AKEYFNKATLYFQ--QAVDEEPSN 38 (126)
Q Consensus 17 A~~~f~kA~~~Fq--kAvd~dP~N 38 (126)
-+..|++|.++|+ -+..+||.|
T Consensus 13 ~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 13 QKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHhhHHHHHHHHHHHHHHHhcccC
Confidence 3467899999966 999999987
No 161
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=62.92 E-value=26 Score=31.89 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhc----------------------CCCcHHHHHHHHHhhcCch-hHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDE----------------------EPSNELYQKSLEVAAKAPE-LHMEIHK 60 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~----------------------dP~Ne~YkKsLe~a~KAPe-lH~ei~k 60 (126)
+||..|+++|.+.|++-+-. |+.-.+|+++|++-.++|+ -|..+.+
T Consensus 300 ~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 300 AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence 67777777777777771111 1111288888888876664 4434433
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.29 E-value=19 Score=29.46 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELYQKSLE 46 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe 46 (126)
.++.+++|..+|++.++..|+++.-+++.+
T Consensus 229 ~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~ 258 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIKKYPGTDGAKQAQK 258 (263)
T ss_pred HcCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 445579999999999999999997776653
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=62.21 E-value=14 Score=29.51 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 5 AISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 5 AisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
+...+++|...-..+.|++|.+.|++.++..|+.+.-.+++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~ 72 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQ 72 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 44566788887778899999999999999999998655443
No 164
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=61.95 E-value=19 Score=27.80 Aligned_cols=29 Identities=14% Similarity=0.380 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH-----HHHHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE-----LYQKSLE 46 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne-----~YkKsLe 46 (126)
...|++|...|++=+.+.|+++ .|++.|-
T Consensus 60 ~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 60 QGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred ccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3457889999999999999988 8888873
No 165
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=61.57 E-value=9.4 Score=26.08 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHH
Q 033160 20 YFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHME 57 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~e 57 (126)
+..+|.+.+++|++.|= +.-|..+|++=..+-++-+.
T Consensus 2 ~l~~A~~l~~~Ave~d~-~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 2 YLEQAAELIRLALEKEE-EGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred hHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence 57889999999998886 67788777777776666544
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=61.00 E-value=13 Score=29.00 Aligned_cols=38 Identities=18% Similarity=0.023 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH 55 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH 55 (126)
...|++|...|+-....||.|-.|--+|=++.++=.-|
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~ 85 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW 85 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH
Confidence 35689999999999999999997777776665544333
No 167
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=60.36 E-value=28 Score=24.19 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM---------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 2 i~dAisKleeAL~---------~~A~~~f~kA~~~FqkA 31 (126)
.++|+.+||+-+. +++...|+++...-+.|
T Consensus 8 fEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k~C 46 (76)
T PRK14068 8 FEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAAC 46 (76)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567777777666 78888888887776665
No 168
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=58.85 E-value=15 Score=31.08 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
..|++-|.+|+. =.=+..|++|-.-|.||+++.|.+..+..||=|.
T Consensus 117 ~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms 177 (257)
T COG5010 117 GEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMS 177 (257)
T ss_pred HHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHH
Confidence 457777777776 1124569999999999999999999999999654
No 169
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=58.15 E-value=13 Score=27.14 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhc--CCCcHHHHHHH
Q 033160 18 KEYFNKATLYFQQAVDE--EPSNELYQKSL 45 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~--dP~Ne~YkKsL 45 (126)
.+.|.+|..-+++|++. +|.|++++-.+
T Consensus 3 l~~~~kAl~~L~ea~~~~~~~~~~~~~dg~ 32 (124)
T PF08780_consen 3 LENFKKALSRLEEALEKYEDPLSELERDGV 32 (124)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 57899999999999998 99999888766
No 170
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.78 E-value=28 Score=25.47 Aligned_cols=29 Identities=38% Similarity=0.536 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 033160 3 LDAISKLEEALM---------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 3 ~dAisKleeAL~---------~~A~~~f~kA~~~FqkA 31 (126)
+.=|+.|||||. ..|..+++-|..||.-|
T Consensus 11 ekYi~~leeaL~~~k~~~~~~s~ae~~~~ma~~Y~~Da 48 (90)
T COG1849 11 EKYIELLEEALKEIKSRPGDRSAAEDFVDMAESYFEDA 48 (90)
T ss_pred HHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHH
Confidence 334677888888 35677777777777655
No 171
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=57.62 E-value=26 Score=26.14 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=6.5
Q ss_pred cCchhHHHHHH
Q 033160 50 KAPELHMEIHK 60 (126)
Q Consensus 50 KAPelH~ei~k 60 (126)
+|.+.|.++-.
T Consensus 63 ~AH~~qt~Liq 73 (115)
T PRK10454 63 EAHLVQTKLIE 73 (115)
T ss_pred HHHHHHHHHHH
Confidence 56666666543
No 172
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.25 E-value=28 Score=30.15 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 49 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~ 49 (126)
.+|..+|+.|.+||+.=-..--.|.+|.|.-..+.
T Consensus 131 ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 131 EKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred HHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 56667777777777654444445666665544443
No 173
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=55.54 E-value=44 Score=32.50 Aligned_cols=48 Identities=21% Similarity=0.122 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh----hcCchhHHHHHHhc
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA----AKAPELHMEIHKHG 62 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a----~KAPelH~ei~kq~ 62 (126)
.-.++.++.|.+||..+|-+||||-.==.||.-+ .|-++-|.-++.+.
T Consensus 529 ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 6677899999999999999999998655555433 45566666666644
No 174
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=55.04 E-value=20 Score=32.96 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
..+..++|.+.|+|||+++|++..-+-++
T Consensus 352 ~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 352 EANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred HcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 34557889999999999999887666555
No 175
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=54.87 E-value=27 Score=26.03 Aligned_cols=27 Identities=37% Similarity=0.369 Sum_probs=17.3
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 033160 4 DAISKLEEALM-------DEAKEYFNKATLYFQQ 30 (126)
Q Consensus 4 dAisKleeAL~-------~~A~~~f~kA~~~Fqk 30 (126)
||-|++=|||. ++|...-++|.+++..
T Consensus 18 ~ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~~l~e 51 (105)
T COG1447 18 NARSKAYEALKAAKEGDFEEAEELIQEANDALNE 51 (105)
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 68899999998 4444444444444443
No 176
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=53.82 E-value=17 Score=19.87 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhc
Q 033160 19 EYFNKATLYFQQAVDE 34 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~ 34 (126)
...++|..+|++|.+.
T Consensus 22 ~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 22 KDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHc
Confidence 3588899999998765
No 177
>PF01649 Ribosomal_S20p: Ribosomal protein S20; InterPro: IPR002583 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family consists of bacterial (and chloroplast) examples of the ribosomal small subunit protein S20. Bacterial ribosomal protein S20 forms part of the 30S ribosomal subunit, and interacts with 16S rRNA.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1I94_T 1FJG_T 4DH9_T 3KNJ_T 3TVG_W 3UYF_W 3V28_T 3KIS_t 3HUY_T 1HNX_T ....
Probab=52.88 E-value=49 Score=23.19 Aligned_cols=32 Identities=38% Similarity=0.453 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q 033160 2 ILDAISKLEEALM----DEAKEYFNKATLYFQQAVD 33 (126)
Q Consensus 2 i~dAisKleeAL~----~~A~~~f~kA~~~FqkAvd 33 (126)
|--+|-|+++|+. ++|.+.|.+|...+-+|+.
T Consensus 27 ~rT~iKk~~~ai~~~~~~~a~~~l~~a~s~iDka~~ 62 (84)
T PF01649_consen 27 VRTAIKKFREAIEAGDKEEAKELLRKAYSAIDKAAK 62 (84)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHH
Confidence 4467889999998 7788888888888888874
No 178
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=52.54 E-value=20 Score=27.16 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=18.6
Q ss_pred CcchhhhhHHHHHHHHHHHH-HhhhcCC-CCCCC
Q 033160 91 DLKYDIFGWVILAVGIVAWV-GFAKSHM-PPPPP 122 (126)
Q Consensus 91 Df~YDv~GWviLa~givaWv-g~Aks~~-P~~~p 122 (126)
|++. |+|.+++++||-+|+ ++.|..+ ||+|.
T Consensus 73 ewk~-v~~~~~~~i~~s~~~~~~~r~~~~~~~P~ 105 (136)
T cd00922 73 EWKT-VFGGVLAFIGITGVIFGLQRAFVYGPKPH 105 (136)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 5554 677788888876664 3445555 55444
No 179
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=52.08 E-value=2.8 Score=32.62 Aligned_cols=25 Identities=44% Similarity=0.733 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCC
Q 033160 101 ILAVGIVAWVGFAKSHMPPPPPTPP 125 (126)
Q Consensus 101 iLa~givaWvg~Aks~~P~~~p~~~ 125 (126)
+|++|.|+..-+-++..|.|+|+||
T Consensus 101 vLagGavAfsivRRs~~~ePsp~pP 125 (133)
T PF10814_consen 101 VLAGGAVAFSIVRRSSRPEPSPLPP 125 (133)
T ss_pred HHhccceEEEEeecCCCCCCCCCCC
Confidence 4444555555455666677777776
No 180
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=51.46 E-value=34 Score=33.54 Aligned_cols=30 Identities=30% Similarity=0.560 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHh
Q 033160 19 EYFNKATLYFQQAVDEEPSNE-----LYQKSLEVA 48 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne-----~YkKsLe~a 48 (126)
..|++|.+.|.+||..||||. .|+-.|+.-
T Consensus 831 ~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 457899999999999999998 788777654
No 181
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=51.13 E-value=5 Score=32.19 Aligned_cols=18 Identities=33% Similarity=0.702 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 033160 97 FGWVILAVGIVAWVGFAK 114 (126)
Q Consensus 97 ~GWviLa~givaWvg~Ak 114 (126)
.||.||++.|++|+.+-|
T Consensus 36 yGWyil~~~I~ly~l~qk 53 (190)
T PF06936_consen 36 YGWYILFGCILLYLLWQK 53 (190)
T ss_dssp ------------------
T ss_pred hCHHHHHHHHHHHHHHHH
Confidence 499999999999876544
No 182
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=50.88 E-value=11 Score=28.72 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCCcH
Q 033160 24 ATLYFQQAVDEEPSNE 39 (126)
Q Consensus 24 A~~~FqkAvd~dP~Ne 39 (126)
|..||++|..+.|+|.
T Consensus 1 A~~~Y~~A~~l~P~~G 16 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG 16 (278)
T ss_dssp HHHHHHHHHHH-TTBS
T ss_pred CHHHHHHHHHhCCCCC
Confidence 7899999999999998
No 183
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=50.72 E-value=24 Score=27.60 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~N 38 (126)
..+|+.-++++|. -.-.+.+++|..+|+++++.+|.+
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 3567777777776 223456799999999999998853
No 184
>PLN03184 chloroplast Hsp70; Provisional
Probab=50.67 E-value=94 Score=28.70 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
.+-++.+.++.+-+++.|+.+ +.+.|+..+
T Consensus 591 ~eer~~l~~~l~~~e~wL~~~-d~~~ik~~~ 620 (673)
T PLN03184 591 ADVKEKVEAKLKELKDAIASG-STQKMKDAM 620 (673)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 444567788888889999876 445555544
No 185
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.49 E-value=18 Score=32.73 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.|..-||-||. .|-.+..=+|.+||-|||-.+|.|+
T Consensus 133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 456666777777 3334555689999999999999998
No 186
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=50.46 E-value=41 Score=25.57 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcH-----HHHHHHHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNE-----LYQKSLEV 47 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne-----~YkKsLe~ 47 (126)
..+.|++|...|++-++.-|+++ .|.+.+--
T Consensus 54 ~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 54 KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 34567888888888888888877 56666543
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=50.04 E-value=35 Score=29.24 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160 1 MILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 47 (126)
Q Consensus 1 Mi~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~ 47 (126)
|..++..=|.+||. ..-.+.|++|...+|+-|+..|.|.--+-.+|-
T Consensus 208 ~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 208 MTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred ccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 45566666777776 333456778888888888888888776666553
No 188
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.02 E-value=63 Score=23.10 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH-----------------HHHHHHHHhhcCch
Q 033160 5 AISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNE-----------------LYQKSLEVAAKAPE 53 (126)
Q Consensus 5 AisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne-----------------~YkKsLe~a~KAPe 53 (126)
|-.++|+-|.--=.+..++|..++.+||+.-++++ -||..|+-|-..=|
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777774445667889999999999999887 56666666544433
No 189
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=48.98 E-value=17 Score=29.59 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=16.7
Q ss_pred CcchhhhhHHHHHHHHHHHH
Q 033160 91 DLKYDIFGWVILAVGIVAWV 110 (126)
Q Consensus 91 Df~YDv~GWviLa~givaWv 110 (126)
-++==|||||+.++.||+=+
T Consensus 56 Gi~~kIf~wi~~avsvv~~~ 75 (306)
T PF04888_consen 56 GIFSKIFGWIGTAVSVVAGA 75 (306)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 56677999999999988766
No 190
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=48.41 E-value=28 Score=34.09 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhcCCCcH
Q 033160 21 FNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 21 f~kA~~~FqkAvd~dP~Ne 39 (126)
+++|...|+++|+.||+|.
T Consensus 132 ~~ka~~~yer~L~~D~~n~ 150 (906)
T PRK14720 132 NKKLKGVWERLVKADRDNP 150 (906)
T ss_pred hHHHHHHHHHHHhcCcccH
Confidence 5566666666666666655
No 191
>PRK00239 rpsT 30S ribosomal protein S20; Reviewed
Probab=48.03 E-value=49 Score=23.49 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Q 033160 2 ILDAISKLEEALM----DEAKEYFNKATLYFQQAVDE 34 (126)
Q Consensus 2 i~dAisKleeAL~----~~A~~~f~kA~~~FqkAvd~ 34 (126)
|--+|-|+++|+. ++|...|.+|....-+|+.-
T Consensus 28 ~kT~iKk~~~ai~~~~~~~a~~~~~~a~s~iDka~~K 64 (88)
T PRK00239 28 VRTAIKKVEAAIAAGDKEAAEEALKAAQSKIDKAASK 64 (88)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHC
Confidence 4567889999988 78888888888888888753
No 192
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=47.35 E-value=14 Score=27.61 Aligned_cols=17 Identities=29% Similarity=0.941 Sum_probs=12.6
Q ss_pred hhhhhHHHHHHHHHHHHHhh
Q 033160 94 YDIFGWVILAVGIVAWVGFA 113 (126)
Q Consensus 94 YDv~GWviLa~givaWvg~A 113 (126)
.-.+-|++|+ +.|+||+
T Consensus 82 ~~~LPW~LL~---lSW~gF~ 98 (103)
T PF11169_consen 82 SSWLPWGLLV---LSWIGFI 98 (103)
T ss_pred ccchhHHHHH---HHHHHHH
Confidence 3467899886 6788886
No 193
>TIGR00029 S20 ribosomal protein S20. This family consists of bacterial (and chloroplast) examples of the bacteria ribosomal small subunit protein S20.
Probab=47.03 E-value=51 Score=23.43 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q 033160 2 ILDAISKLEEALM----DEAKEYFNKATLYFQQAVD 33 (126)
Q Consensus 2 i~dAisKleeAL~----~~A~~~f~kA~~~FqkAvd 33 (126)
|--+|-|+++|+. ++|.+.|.+|.....+|+.
T Consensus 28 ~kT~iKk~~~ai~~~d~~~a~~~l~~a~s~iDkaa~ 63 (87)
T TIGR00029 28 MKTIIKKVYAAIAAGDKDKAQEAFKEAAKKLDRAAR 63 (87)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999998 7788888888888888774
No 194
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=46.90 E-value=39 Score=33.12 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH----HhhcCch---hHHHHHHh
Q 033160 3 LDAISKLEEALM--------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE----VAAKAPE---LHMEIHKH 61 (126)
Q Consensus 3 ~dAisKleeAL~--------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe----~a~KAPe---lH~ei~kq 61 (126)
++|+.-.|++|. .-+...+++|.+++.|||..-=+++-|...++ ++.-.|+ .-..|.+-
T Consensus 133 ~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~k 212 (906)
T PRK14720 133 KKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERK 212 (906)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 467777888887 22333899999999999999999999999885 6666776 33345555
Q ss_pred cc
Q 033160 62 GL 63 (126)
Q Consensus 62 ~~ 63 (126)
+.
T Consensus 213 i~ 214 (906)
T PRK14720 213 VL 214 (906)
T ss_pred HH
Confidence 54
No 195
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=46.46 E-value=15 Score=34.49 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHHHH
Q 033160 95 DIFGWVILAVGIVAWV 110 (126)
Q Consensus 95 Dv~GWviLa~givaWv 110 (126)
-|+||||.+|++||-|
T Consensus 319 KIlG~vitaVsvvAAv 334 (593)
T PRK15374 319 KVLGALLTIVSVVAAV 334 (593)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4899999999988854
No 196
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=46.13 E-value=15 Score=27.38 Aligned_cols=12 Identities=42% Similarity=1.113 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q 033160 100 VILAVGIVAWVG 111 (126)
Q Consensus 100 viLa~givaWvg 111 (126)
++|.+|+|+|++
T Consensus 40 ~~lv~glvgW~~ 51 (104)
T PF11460_consen 40 ALLVLGLVGWVS 51 (104)
T ss_pred HHHHHHHHHHHh
Confidence 588899999986
No 197
>PF11601 Shal-type: Shal-type voltage-gated potassium channels ; InterPro: IPR021645 This family of proteins represents Shal-type voltage-gated potassium channels which interact with Kv channel-interacting proteins to modulate cell surface expression and function of Kv4 channels. The interaction of the Shal-type protein Kv4.2 and the Kv interacting protein KChiP1 forms a structure which is like the structure between calmodulin and its target peptides when they interact. Interactions of an N-terminal alpha helix in Kv4.2 and a C-terminal alpha helix in KChIP1 are essential for the modulation of Kv4.2 by KChIPs []. ; PDB: 2NZ0_B 2I2R_B 1S6C_B.
Probab=45.92 E-value=4.9 Score=23.93 Aligned_cols=24 Identities=25% Similarity=0.803 Sum_probs=16.8
Q ss_pred hhhHHHHHHH-HHHHHHhhhcCCCC
Q 033160 96 IFGWVILAVG-IVAWVGFAKSHMPP 119 (126)
Q Consensus 96 v~GWviLa~g-ivaWvg~Aks~~P~ 119 (126)
|.-|.=|+=. .++|+-+|++.+|+
T Consensus 3 vaaWlPfaraaAIGW~p~a~~~lP~ 27 (28)
T PF11601_consen 3 VAAWLPFARAAAIGWLPLAQQPLPP 27 (28)
T ss_dssp CHTTHHHHHHHHTTTSSTTSSSSSS
T ss_pred chhhhhHHHHHhhcceeeccCCCCC
Confidence 4556666544 78888888888874
No 198
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=45.74 E-value=23 Score=34.43 Aligned_cols=26 Identities=27% Similarity=0.156 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
-++..-++.|++|||-|+.+|++|..
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHccchHHHHHHHHHHHhhccCCCc
Confidence 56777789999999999999999874
No 199
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=45.73 E-value=19 Score=33.36 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHh-----------------cCCCcHHHHHH
Q 033160 1 MILDAISKLEEALM------DEAKEYFNKATLYFQQAVD-----------------EEPSNELYQKS 44 (126)
Q Consensus 1 Mi~dAisKleeAL~------~~A~~~f~kA~~~FqkAvd-----------------~dP~Ne~YkKs 44 (126)
||.-||.|||+||. .--+..|+.-+..|.|-|. .||+.+|||-+
T Consensus 264 mi~~~~~~l~~~l~~a~i~~~~i~gr~ks~ysi~~kmlk~~~~~dei~di~glr~i~~~~~~cyk~~ 330 (543)
T KOG1157|consen 264 MITSAIEKLEQALKKAGISYHVIKGRHKSLYSIYKKMLKKKLTPDEIHDIHGLRLIVDNESDCYKAL 330 (543)
T ss_pred HHHHHHHHHHHHHHhccceeEEEecchhhHHHHHHHHHhcCCCHHHhhhhcceEEEEcCchHHHHHH
Confidence 78999999999999 2233445555566666653 57888899754
No 200
>PF15100 TMEM187: TMEM187 protein family
Probab=45.51 E-value=16 Score=30.85 Aligned_cols=27 Identities=30% Similarity=0.676 Sum_probs=24.2
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHhhhc
Q 033160 89 SSDLKYDIFGWVILAVGIVAWVGFAKS 115 (126)
Q Consensus 89 ~sDf~YDv~GWviLa~givaWvg~Aks 115 (126)
..++.+||++|..|+-|.|=|+=++-.
T Consensus 77 ~a~Y~k~vfa~mAl~YgpVQwlri~Tq 103 (242)
T PF15100_consen 77 RARYLKDVFAWMALHYGPVQWLRIATQ 103 (242)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 678999999999999999999988753
No 201
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=45.43 E-value=42 Score=33.54 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 1 MILDAISKLEEALM-------------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 1 Mi~dAisKleeAL~-------------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
|-+.|++-+|-||. .++ +.|++|..-+++|+.++|+|.
T Consensus 214 ~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~-~s~~~~~~ll~~ay~~n~~nP 270 (1018)
T KOG2002|consen 214 MSEKALLAFERALQLDPTCVSALVALGEVDLNFNDS-DSYKKGVQLLQRAYKENNENP 270 (1018)
T ss_pred chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccch-HHHHHHHHHHHHHHhhcCCCc
Confidence 56788999999988 222 678899999999999999998
No 202
>PF09016 Pas_Saposin: Pas factor saposin fold; InterPro: IPR015106 Members of this entry adopt a compact structure comprising five alpha helices. Charged and polar residues are exposed mostly on the surface, while most of the hydrophobic residues are buried inside the hydrophobic core of the helical bundle. The precise function of this domain is unknown, but it is has been shown to induce secretion of periplasmic proteins, especially collagenase []. ; PDB: 2B8I_A.
Probab=44.24 E-value=23 Score=25.31 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=18.9
Q ss_pred HHHHHHHHhhcCchhHHHHHHhcc
Q 033160 40 LYQKSLEVAAKAPELHMEIHKHGL 63 (126)
Q Consensus 40 ~YkKsLe~a~KAPelH~ei~kq~~ 63 (126)
.|..-..+|.+.||.|.+|...+-
T Consensus 5 IYdTL~~LA~~ePeqhA~IRQ~LY 28 (76)
T PF09016_consen 5 IYDTLINLANQEPEQHAQIRQNLY 28 (76)
T ss_dssp HHHHHHHHHHS-GGGHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHH
Confidence 477777899999999999987653
No 203
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=44.04 E-value=69 Score=22.54 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkA 31 (126)
++|+..|+++...+++|
T Consensus 34 e~sl~~~erG~~L~k~c 50 (81)
T COG1722 34 EEALKEFERGMALYKEC 50 (81)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777777766665554
No 204
>TIGR01985 phasin_2 phasin. Members of the seed for this model all contain the rest of the components believed to be essential for this system (see the "polyhydroxyalkanoic acid synthesis" property in the GenPropDB). Members of this family score below trusted to another phasin model, TIGR01841 and together may represent a subfamily or broader equivalog.
Probab=43.77 E-value=1.2e+02 Score=21.95 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCcHHHHHHHHHhhcCchhHHHHHHhc
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQAVDE---------EPSNELYQKSLEVAAKAPELHMEIHKHG 62 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkAvd~---------dP~Ne~YkKsLe~a~KAPelH~ei~kq~ 62 (126)
+.+..+-|.=.+.+++.|++.....+++++. .+-.++++|+|+.+++.=+-..+.-+.+
T Consensus 4 e~~r~~aek~~~qa~~a~~~~~~~ae~~~~~~~~s~~~~~~g~~~i~~~~l~~~k~~~e~~~~~~~~L 71 (112)
T TIGR01985 4 AEFRDFAEKGVDQAKEAFAKFKGAAEETTKALEDAASTSSLTANEISSKTIEFMQANAEAAFDFTQKL 71 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555577888888888888888776 5667788888877765555444444433
No 205
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.73 E-value=65 Score=25.62 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~ 37 (126)
.+.+.+..+|.++|.+|++.+..
T Consensus 135 ~~E~~fl~~Al~~y~~a~~~e~~ 157 (214)
T PF09986_consen 135 ENEKRFLRKALEFYEEAYENEDF 157 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcC
Confidence 66778889999999999987754
No 206
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=43.68 E-value=17 Score=22.07 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 033160 17 AKEYFNKATLYFQQAVDE 34 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~ 34 (126)
-.++|+.|.+=|++||++
T Consensus 13 e~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 13 ENENFEQAIEDYEKALEI 30 (38)
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 457788888888888764
No 207
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=43.64 E-value=53 Score=30.92 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHH--------------HHH-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 2 ILDAISKLEEALM--------------DEA-KEYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 2 i~dAisKleeAL~--------------~~A-~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
|-+|+=-||.|.+ +.| ++.=..|...+++||++||+|-.=...|-++
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 4567777888888 222 2334568899999999999998666666554
No 208
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.20 E-value=50 Score=26.25 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 033160 2 ILDAISKLEEALM---------------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 49 (126)
Q Consensus 2 i~dAisKleeAL~---------------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~ 49 (126)
++.|..-+++|+. ..=.++|++|..+|.+.+..-= .....+-+++|.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~-~s~~~~l~~~AR 208 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK-ASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC-CCCcHHHHHHHH
Confidence 5667777888876 3345667899999998876433 333555555554
No 209
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.05 E-value=56 Score=23.12 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
.+.|++|...|+++++..|++++
T Consensus 61 ~g~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 61 QGDYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred CCCHHHHHHHHHHHHhhCCCHHH
Confidence 46788999999999998877754
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=42.46 E-value=37 Score=29.82 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM-------------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~-------------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+++||.-|++|+. .-.+..|++|.+||.+.++++.-..
T Consensus 283 ~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk 339 (468)
T PF10300_consen 283 LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK 339 (468)
T ss_pred HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH
Confidence 5788888888776 4456778999999999999765543
No 211
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=42.12 E-value=96 Score=22.62 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM------------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~------------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++||.=.++||. -..+..+++|...|+++++..|+++
T Consensus 18 ~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 18 EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 356666666666 2345578999999999999999844
No 212
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=41.69 E-value=34 Score=34.66 Aligned_cols=29 Identities=24% Similarity=0.104 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 033160 22 NKATLYFQQAVDEEPSNELYQKSLEVAAK 50 (126)
Q Consensus 22 ~kA~~~FqkAvd~dP~Ne~YkKsLe~a~K 50 (126)
..|..||+|||.++-+|+.|...|.+..-
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVlsg 828 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVLSG 828 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhc
Confidence 78999999999999999999999999854
No 213
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=41.58 E-value=32 Score=30.14 Aligned_cols=50 Identities=28% Similarity=0.310 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH--------------HHHHHHHHhhcCc
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE--------------LYQKSLEVAAKAP 52 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne--------------~YkKsLe~a~KAP 52 (126)
.+||.-|.++|. --.++.++.|.++.|+|++.-|++- -|+++|-.-.-.|
T Consensus 217 ~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 217 VEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 477888888887 2234567999999999999999875 5677775555666
No 214
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=41.13 E-value=91 Score=19.60 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~N 38 (126)
..+...+++|.+.|+++++.++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~ 128 (291)
T COG0457 105 LEALGKYEEALELLEKALALDPDP 128 (291)
T ss_pred HHHHhhHHHHHHHHHHHHcCCCCc
Confidence 444555566666666666665555
No 215
>KOG4449 consensus Translocase of outer mitochondrial membrane complex, subunit TOM7 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.00 E-value=20 Score=24.08 Aligned_cols=18 Identities=50% Similarity=1.095 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHhhhcCCCC
Q 033160 98 GWVILAVGIVAWVGFAKSHMPP 119 (126)
Q Consensus 98 GWviLa~givaWvg~Aks~~P~ 119 (126)
|||=| |.|+|||+..-||
T Consensus 25 G~IP~----VlyLG~a~~a~~P 42 (53)
T KOG4449|consen 25 GWIPL----VLYLGFAFGARPP 42 (53)
T ss_pred chhhH----HHHhhhhhcCCCC
Confidence 88766 7799999976663
No 216
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=40.77 E-value=26 Score=28.09 Aligned_cols=17 Identities=18% Similarity=0.638 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHh
Q 033160 96 IFGWVILAVGIVAWVGF 112 (126)
Q Consensus 96 v~GWviLa~givaWvg~ 112 (126)
.++|+++++.++.||.|
T Consensus 228 ~~~~~~i~~v~~~Fi~m 244 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFIMM 244 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68899998888888866
No 217
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=40.64 E-value=24 Score=26.90 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=17.6
Q ss_pred CCCcchhhhhHHHHHHHHHHHH-HhhhcCCCCC
Q 033160 89 SSDLKYDIFGWVILAVGIVAWV-GFAKSHMPPP 120 (126)
Q Consensus 89 ~sDf~YDv~GWviLa~givaWv-g~Aks~~P~~ 120 (126)
.+.-|==|+|.+++.+|+.+|+ .+-|..+.||
T Consensus 70 ~~gewk~v~~~~~~~i~~s~~l~~~~r~~~~~~ 102 (142)
T PF02936_consen 70 PTGEWKKVFGGVFIFIGFSVLLFIWQRSYVYPP 102 (142)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3334446888888888877664 3445455444
No 218
>PHA01080 hypothetical protein
Probab=40.23 E-value=28 Score=25.13 Aligned_cols=20 Identities=20% Similarity=0.016 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHH-HHhhhc
Q 033160 96 IFGWVILAVGIVAW-VGFAKS 115 (126)
Q Consensus 96 v~GWviLa~givaW-vg~Aks 115 (126)
+||||++...+-+. |.|||.
T Consensus 56 gF~~V~~lgyls~YaVkiakk 76 (80)
T PHA01080 56 GFMAVFALGYLSTYAVYIGKK 76 (80)
T ss_pred hHHHHHHhhhhHHHHHHHHHH
Confidence 57899887777755 888884
No 219
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=40.22 E-value=16 Score=21.83 Aligned_cols=20 Identities=30% Similarity=0.797 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHHH--HHhhhc
Q 033160 95 DIFGWVILAVGIVAW--VGFAKS 115 (126)
Q Consensus 95 Dv~GWviLa~givaW--vg~Aks 115 (126)
-+..|+ |+.=+++| ||++|.
T Consensus 5 ~lgcWi-lvLfvatwsdvglcKK 26 (29)
T PF11587_consen 5 HLGCWI-LVLFVATWSDVGLCKK 26 (29)
T ss_dssp TTTTHH-HHHHHHHHHHHTTSSS
T ss_pred cccHHH-HHHHHHHHhhhccccC
Confidence 355674 55567788 999996
No 220
>PF06109 HlyE: Haemolysin E (HlyE); InterPro: IPR010356 This family consists of several enterobacterial haemolysin (HlyE) proteins. Haemolysin E (HlyE) is a novel pore-forming toxin of Escherichia coli, Salmonella typhi, and Shigella flexneri. HlyE is unrelated to the well characterised pore-forming E. coli haemolysins of the RTX family, haemolysin A (HlyA), and the enterohaemolysin encoded by the plasmid borne ehxA gene of E. coli 0157. However, it is evident that expression of HlyE in the absence of the RTX toxins is sufficient to give a haemolytic phenotype in E. coli. HlyE is a protein of 34 kDa that is expressed during anaerobic growth of E. coli. Anaerobic expression is controlled by the transcription factor, FNR, such that, upon ingestion and entry into the anaerobic mammalian intestine, HlyE is produced and may then contribute to the colonisation of the host [].; PDB: 2WCD_P 1QOY_A.
Probab=39.91 E-value=74 Score=27.16 Aligned_cols=32 Identities=34% Similarity=0.503 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHh
Q 033160 2 ILDAISKLEEALM--------------------DEAKEYFNKATLYFQQAVD 33 (126)
Q Consensus 2 i~dAisKleeAL~--------------------~~A~~~f~kA~~~FqkAvd 33 (126)
+.|.|.|||+|-. .+--+-|+|-..|||--||
T Consensus 117 lddgi~kl~~aq~sl~~ssqsfn~asgkl~aldsql~ndf~eks~yfq~qvd 168 (299)
T PF06109_consen 117 LDDGIIKLNKAQQSLHVSSQSFNNASGKLIALDSQLTNDFSEKSSYFQSQVD 168 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHHHhhhhhhhcccccceeeehhhhhcchhHHHHHHHHHHH
Confidence 5789999999866 4455678888888887765
No 221
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=39.64 E-value=28 Score=25.26 Aligned_cols=20 Identities=40% Similarity=0.916 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhhcCCCC
Q 033160 100 VILAVGIVAWVGFAKSHMPP 119 (126)
Q Consensus 100 viLa~givaWvg~Aks~~P~ 119 (126)
++++++.++|+++.+...|+
T Consensus 14 ~vv~~~~~~w~~~~~~~~~~ 33 (112)
T PF14155_consen 14 VVVAGAVVAWFGYSQFGSPP 33 (112)
T ss_pred HHHHHHHHhHhhhhhccCCC
Confidence 44556689999999765554
No 222
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=39.51 E-value=65 Score=31.83 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+=.++.+.|.-||-||+..+|+|-
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~ 241 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNW 241 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcch
Confidence 4445667777777777777777774
No 223
>PF08159 NUC153: NUC153 domain; InterPro: IPR012580 This small domain is found in a novel nucleolar family [].; GO: 0005634 nucleus
Probab=39.14 E-value=18 Score=21.42 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=12.0
Q ss_pred HHhcCCCcHHHHHH
Q 033160 31 AVDEEPSNELYQKS 44 (126)
Q Consensus 31 Avd~dP~Ne~YkKs 44 (126)
.+++||+|+-|++.
T Consensus 12 dF~ID~t~~~yk~~ 25 (30)
T PF08159_consen 12 DFAIDPTSPEYKKT 25 (30)
T ss_pred ccccCCCCHHHHhh
Confidence 46899999999975
No 224
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=39.10 E-value=37 Score=30.55 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcH--------------HHHHHH---H-HhhcCchhHHHHHH
Q 033160 14 MDEAKEYFNKATLYFQQAVDEEPSNE--------------LYQKSL---E-VAAKAPELHMEIHK 60 (126)
Q Consensus 14 ~~~A~~~f~kA~~~FqkAvd~dP~Ne--------------~YkKsL---e-~a~KAPelH~ei~k 60 (126)
...+.+.+++|.+.++||+..||++- .|.++. | +..+.|++=.|+--
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 37888999999999999999999874 566554 2 33667777666544
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=38.68 E-value=44 Score=29.45 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH---HHHHHHHHhhcCchhHHHHHHhc
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE---LYQKSLEVAAKAPELHMEIHKHG 62 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne---~YkKsLe~a~KAPelH~ei~kq~ 62 (126)
.+.+++|.++|.||++.+|+-= .|---|.++...=+-..|+++-+
T Consensus 239 ~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~ 286 (374)
T PF13281_consen 239 RESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIG 286 (374)
T ss_pred hHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHH
Confidence 4569999999999999996321 34445677766556666666644
No 226
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=38.39 E-value=35 Score=22.56 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=6.7
Q ss_pred CCCcchhh
Q 033160 89 SSDLKYDI 96 (126)
Q Consensus 89 ~sDf~YDv 96 (126)
.++|-||.
T Consensus 4 ~~pF~YDy 11 (50)
T PF02038_consen 4 DDPFYYDY 11 (50)
T ss_dssp CSGGGGCH
T ss_pred CCCCccch
Confidence 49999994
No 227
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=38.24 E-value=78 Score=30.95 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
.+.+..++||.++|.-|+.+||+.-.=..+|
T Consensus 694 ~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 8899999999999999999999987555555
No 228
>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]
Probab=37.67 E-value=26 Score=27.18 Aligned_cols=18 Identities=39% Similarity=0.473 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 033160 97 FGWVILAVGIVAWVGFAK 114 (126)
Q Consensus 97 ~GWviLa~givaWvg~Ak 114 (126)
-||++|+|.+-+++|..-
T Consensus 120 N~~l~Lavv~Ga~~G~fl 137 (155)
T KOG3386|consen 120 NGYLFLAVVLGAGVGYFL 137 (155)
T ss_pred hhHHHHHHHHHHhhhhhe
Confidence 499999999999999754
No 229
>KOG2518 consensus 5'-3' exonuclease [Replication, recombination and repair]
Probab=37.64 E-value=18 Score=33.78 Aligned_cols=29 Identities=31% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 033160 9 LEEALMDEAKEYFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 9 leeAL~~~A~~~f~kA~~~FqkAvd~dP~ 37 (126)
|+.|..--|++.=.+|.+|||+||+.-|+
T Consensus 100 ~~~a~~ll~~G~~~~A~~~fqr~VdIT~~ 128 (556)
T KOG2518|consen 100 LDAAEQLLAEGKESNARECFQRCVDITPE 128 (556)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCcHH
Confidence 45555566777778999999999999984
No 230
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=37.39 E-value=81 Score=28.49 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNELYQK 43 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~YkK 43 (126)
.+.|.||.++|+.|++..|+-+.|--
T Consensus 341 ~~~w~kA~~~leaAl~~~~s~~~~~~ 366 (400)
T COG3071 341 NKLWGKASEALEAALKLRPSASDYAE 366 (400)
T ss_pred hhHHHHHHHHHHHHHhcCCChhhHHH
Confidence 56799999999999999999988753
No 231
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=37.10 E-value=1e+02 Score=24.99 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcC
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA 51 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KA 51 (126)
.+++..||++.+-|-.|++ |.|.+.++-
T Consensus 110 ke~kk~FdK~se~~~~al~---------k~~~lsk~k 137 (207)
T cd07602 110 KEEKKKFDKETEKFCSSLE---------KHLNLSTKK 137 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHhccCCCC
Confidence 6778889999999999987 666666555
No 232
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=36.88 E-value=1.1e+02 Score=21.20 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQ 30 (126)
Q Consensus 15 ~~A~~~f~kA~~~Fqk 30 (126)
++|.++|..|.++|..
T Consensus 23 ~eA~~lY~~ale~~~~ 38 (75)
T cd02680 23 EEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777777777777
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=36.70 E-value=59 Score=24.68 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 5 AISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 5 AisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
+-.-+++|+..-..+.|++|.+.|++.++.-|+.+.-.+++
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~ 45 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQ 45 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 44556777777778889999999999999999988665554
No 234
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.42 E-value=1.6e+02 Score=28.29 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=8.4
Q ss_pred HHHHHHHHhhcCchhH
Q 033160 40 LYQKSLEVAAKAPELH 55 (126)
Q Consensus 40 ~YkKsLe~a~KAPelH 55 (126)
-|..-||-+.|--|+.
T Consensus 714 ey~~klek~eki~eir 729 (840)
T KOG2003|consen 714 EYADKLEKAEKIKEIR 729 (840)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555555543
No 235
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=36.15 E-value=66 Score=22.08 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAV 32 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAv 32 (126)
..|.+.++.|..|++-+.
T Consensus 26 ~~a~~~~~mA~~Y~~D~~ 43 (75)
T PF04010_consen 26 DAAEEILEMAESYLEDGK 43 (75)
T ss_dssp HCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666666553
No 236
>PF13446 RPT: A repeated domain in UCH-protein
Probab=35.06 E-value=56 Score=20.72 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCcH-HHHHHHHHhh
Q 033160 23 KATLYFQQAVDEEPSNE-LYQKSLEVAA 49 (126)
Q Consensus 23 kA~~~FqkAvd~dP~Ne-~YkKsLe~a~ 49 (126)
.-..+|+..++.+|+|. .|+++|+.-.
T Consensus 21 ~Ii~~f~~~~~~~P~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 21 FIISAFQSKVNDDPSQKDTLREALRVIA 48 (62)
T ss_pred HHHHHHHHHHHcChHhHHHHHHHHHHHH
Confidence 34567888888999886 5899997653
No 237
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=34.38 E-value=32 Score=21.19 Aligned_cols=15 Identities=47% Similarity=0.791 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhh
Q 033160 100 VILAVGIVAWVGFAK 114 (126)
Q Consensus 100 viLa~givaWvg~Ak 114 (126)
|||.+|.++.+||-|
T Consensus 6 i~L~l~ga~f~~fKK 20 (33)
T PF10855_consen 6 IILILGGAAFYGFKK 20 (33)
T ss_pred ehhhhhhHHHHHHHH
Confidence 678899999999988
No 238
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.36 E-value=42 Score=27.74 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHH-hhcCchhHHHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNELYQKSLEV-AAKAPELHMEIHK 60 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~-a~KAPelH~ei~k 60 (126)
+.+|++|.+-+++-.. ||++..+|+=|-+ -++=--.|.=||.
T Consensus 124 ~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqn 166 (200)
T cd00280 124 NGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQN 166 (200)
T ss_pred cCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHh
Confidence 5789999999999998 9999988776633 3444445666655
No 239
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=33.34 E-value=1.1e+02 Score=27.45 Aligned_cols=46 Identities=35% Similarity=0.448 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhcC------CCc--HHHHHHHHHhh
Q 033160 3 LDAISKLEEALM-------------DEAKEYFNKATLYFQQAVDEE------PSN--ELYQKSLEVAA 49 (126)
Q Consensus 3 ~dAisKleeAL~-------------~~A~~~f~kA~~~FqkAvd~d------P~N--e~YkKsLe~a~ 49 (126)
+||+..|.+.|. ++++++-+-+.+|- -|+.+| |++ +--|++||||.
T Consensus 221 ~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYi-lgl~iEl~Rr~l~~~~~~~~kR~lELAA 287 (422)
T PF06957_consen 221 EEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYI-LGLSIELERRELPKDPVEDQKRNLELAA 287 (422)
T ss_dssp HHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHCTS-TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 456666666555 56777777777663 233322 222 34577788874
No 240
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.06 E-value=40 Score=29.17 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELYQKS 44 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKs 44 (126)
...+|+.|..||-+|+-.+|.+-.|-.+
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tn 49 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTN 49 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhh
Confidence 4568899999999999999999766443
No 241
>PF13041 PPR_2: PPR repeat family
Probab=33.06 E-value=80 Score=18.48 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHh--cCCCcHHHHHHHHH
Q 033160 19 EYFNKATLYFQQAVD--EEPSNELYQKSLEV 47 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd--~dP~Ne~YkKsLe~ 47 (126)
+.+++|.+.|++-.+ ..||.-+|..-+..
T Consensus 17 ~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 17 GKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 467888888888776 57999999877654
No 242
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=32.91 E-value=47 Score=17.66 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhcC
Q 033160 19 EYFNKATLYFQQAVDEE 35 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~d 35 (126)
...++|..+|++|.+..
T Consensus 19 ~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 19 KDLEKALEYYKKAAELG 35 (36)
T ss_pred cCHHHHHHHHHHHHHcc
Confidence 35678888888887653
No 243
>PF00784 MyTH4: MyTH4 domain; InterPro: IPR000857 The microtubule-based kinesin motors and actin-based myosin motors generate movements required for intracellular trafficking, cell division, and muscle contraction. In general, these proteins consist of a motor domain that generates movement and a tail region that varies widely from class to class and is thought to mediate many of the regulatory or cargo binding functions specific to each class of motor []. The Myosin Tail Homology 4 (MyTH4) domain has been identified as a conserved domain in the tail domains of several different unconventional myosins [] and a plant kinesin-like protein [], but has more recently been found in several non-motor proteins []. Although the function is not yet fully understood, there is an evidence that the MyTH4 domain of Myosin-X (Myo10) binds to microtubules and thus could provide a link between an actin-based motor protein and the microtubule cytoskeleton []. The MyTH4 domain is found in one or two copies associated with other domains, such as myosin head, kinesin motor, FERM, PH, SH3 and IQ. The domain is predicted to be largely alpha-helical, interrupted by three or four turns. The MyTH4 domain contains four highly conserved regions designated MGD (consensus sequence L(K/R)(F/Y)MGDhP, LRDE (consensus LRDEhYCQhhKQHxxxN), RGW (consensus RGWxLh), and ELEA (RxxPPSxhELEA), where h indicates a hydrophobic residue and x is any residue [].; GO: 0005856 cytoskeleton; PDB: 3AU5_A 3AU4_A 3PZD_A 3PVL_A.
Probab=32.67 E-value=95 Score=21.81 Aligned_cols=48 Identities=31% Similarity=0.369 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhcccccccCCCCCCCCCCCCccccccccCCCcchhhhhHHHHHHHH
Q 033160 39 ELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGI 106 (126)
Q Consensus 39 e~YkKsLe~a~KAPelH~ei~kq~~~qq~~~~~~~g~~~~s~~k~~kkkk~sDf~YDv~GWviLa~gi 106 (126)
++=+.-++.+-+-|+|..||-=|+.-|-. . |.+-..-.-||-+|++-+
T Consensus 4 ~l~~~Il~~~l~~~~LrDEiy~QliKQtt------~--------------np~~~s~~r~W~Ll~~~~ 51 (114)
T PF00784_consen 4 DLIQNILQKGLENPELRDEIYCQLIKQTT------N--------------NPSPDSCIRGWQLLALCC 51 (114)
T ss_dssp HHHHHHHHHHHH-CCHHHHHHHHHHHHTS------S---------------SSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcchhhHHHHHHHHHHHHH------C--------------CCchhhHHHHHHHHHHHH
Confidence 45566778888999999999999986653 1 112223456999998754
No 244
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=32.42 E-value=1.3e+02 Score=24.50 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.--++....|.+||.+||..+|-|-
T Consensus 107 a~Lnerkr~al~~y~~al~~~ppn~ 131 (193)
T PF12925_consen 107 AMLNERKRAALENYTAALQADPPNP 131 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSS--H
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 4456788999999999999998886
No 245
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=31.45 E-value=88 Score=24.93 Aligned_cols=8 Identities=38% Similarity=0.908 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 033160 40 LYQKSLEV 47 (126)
Q Consensus 40 ~YkKsLe~ 47 (126)
+|++++++
T Consensus 96 ~~~~A~~~ 103 (282)
T PF14938_consen 96 CYEKAIEI 103 (282)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 246
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=30.86 E-value=1.1e+02 Score=23.80 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
..+.++++..+|++|+.++|+++
T Consensus 270 ~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 270 SSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred ccccHHHHHHHHHHHHHhChhHH
Confidence 34778999999999999999887
No 247
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.84 E-value=1.2e+02 Score=24.19 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 033160 15 DEAKEYFNKATLYFQQAVDE 34 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~ 34 (126)
.+++..||++.+-|-.|+..
T Consensus 104 KE~rK~Fdk~se~yd~al~k 123 (200)
T cd07637 104 KETKKQFDKVREDLEIALVK 123 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888777763
No 248
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.82 E-value=73 Score=25.72 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 033160 15 DEAKEYFNKATLYFQQAVDE 34 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~ 34 (126)
.+++..|||+.+-|..|++.
T Consensus 104 Ke~kK~FdK~s~~~d~al~K 123 (200)
T cd07639 104 RDARKEFERGAESLEAALQH 123 (200)
T ss_pred HHHhhhHhhcchhHHHHHHH
Confidence 67888888888888888553
No 249
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=30.32 E-value=1.1e+02 Score=25.09 Aligned_cols=43 Identities=23% Similarity=0.158 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcCCCcH-HHHHHHH-HhhcCchhHHHHHHhc
Q 033160 20 YFNKATLYFQQAVDEEPSNE-LYQKSLE-VAAKAPELHMEIHKHG 62 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne-~YkKsLe-~a~KAPelH~ei~kq~ 62 (126)
....|...-+.-.+.||+|. .|++|++ ..+|-=+|+.+++...
T Consensus 142 a~~~v~~I~~~L~~~dP~~~~~y~~N~~~y~~kL~~l~~~~~~~~ 186 (303)
T COG0803 142 AKIYAENIADALVELDPENKETYEKNAEAYLKKLNKLDEEAKAKL 186 (303)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666678999997 8889884 4577777777776643
No 250
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=30.29 E-value=30 Score=25.32 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhcC
Q 033160 95 DIFGWVILAVGIVAWVGFAKSH 116 (126)
Q Consensus 95 Dv~GWviLa~givaWvg~Aks~ 116 (126)
|+++|=|+.+.||+++.|--..
T Consensus 3 ~iG~~ElliIlvi~LllFGpkK 24 (92)
T PRK00575 3 SLSPWHWAILAVVVILLFGAKK 24 (92)
T ss_pred cccHHHHHHHHHHHHHhccchH
Confidence 6788989999999998776433
No 251
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=30.10 E-value=51 Score=24.31 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=11.9
Q ss_pred cchhhhhHHHHHHHHHHHHH
Q 033160 92 LKYDIFGWVILAVGIVAWVG 111 (126)
Q Consensus 92 f~YDv~GWviLa~givaWvg 111 (126)
+|-=--||-||++.+++.++
T Consensus 16 wwP~a~GWwll~~lll~~~~ 35 (146)
T PF14316_consen 16 WWPLAPGWWLLLALLLLLLI 35 (146)
T ss_pred CCCccHHHHHHHHHHHHHHH
Confidence 34444677777777655544
No 252
>PF03945 Endotoxin_N: delta endotoxin, N-terminal domain; InterPro: IPR005639 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain (IPR005638 from INTERPRO) that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved N-terminal domain.; GO: 0009405 pathogenesis; PDB: 3EB7_A 1I5P_A 2C9K_A 1CIY_A 1JI6_A 1DLC_A 1W99_A.
Probab=29.42 E-value=2.2e+02 Score=21.59 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhc---CCCcHHHHHHH
Q 033160 20 YFNKATLYFQQAVDE---EPSNELYQKSL 45 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~---dP~Ne~YkKsL 45 (126)
-.....+.|+.+++. +|++..++..+
T Consensus 72 gl~~~~~~y~~~~~~~~~~~~~~~~~~~v 100 (226)
T PF03945_consen 72 GLQNLLQDYNDALENWKNNPNNPNLKEEV 100 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCchhHHHH
Confidence 344556667776654 88887764443
No 253
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=29.22 E-value=90 Score=18.78 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHH
Q 033160 21 FNKATLYFQQAVDEEPSNELYQK 43 (126)
Q Consensus 21 f~kA~~~FqkAvd~dP~Ne~YkK 43 (126)
||.|-..|++.|..-|+=..+-|
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHHH
Confidence 78899999999999998776654
No 254
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.94 E-value=2e+02 Score=25.06 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
..+-|++|.=||...+=.+|.|..|.
T Consensus 166 ~~~~f~kA~fClEE~ll~~P~n~l~f 191 (289)
T KOG3060|consen 166 SEGDFEKAAFCLEELLLIQPFNPLYF 191 (289)
T ss_pred hHhHHHHHHHHHHHHHHcCCCcHHHH
Confidence 45678899999999999999998554
No 255
>PRK14160 heat shock protein GrpE; Provisional
Probab=28.93 E-value=3.2e+02 Score=22.33 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHHHHhccc
Q 033160 24 ATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLG 64 (126)
Q Consensus 24 A~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei~kq~~~ 64 (126)
..+-|.+|+..+++.+.+.+.++|..+ +|+.-|.++|+.
T Consensus 120 VlDnLerAl~~~~~~~~l~~Gv~mi~k--ql~~vL~k~GVe 158 (211)
T PRK14160 120 VLDNLERAAAVEGSVEDLKKGIEMTVK--QFKTSLEKLGVE 158 (211)
T ss_pred HHhHHHHHHhcccchhHHHHHHHHHHH--HHHHHHHHCCCE
Confidence 456788888888888889999999876 577777777754
No 256
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=28.48 E-value=1.3e+02 Score=24.93 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+.+...++-...|+|||+.+|+|+
T Consensus 41 ~~~~a~~E~klsilerAL~~np~~~ 65 (321)
T PF08424_consen 41 AERRALAERKLSILERALKHNPDSE 65 (321)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3456677888899999999999998
No 257
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=28.47 E-value=31 Score=28.27 Aligned_cols=20 Identities=35% Similarity=0.265 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHHHHHhhh
Q 033160 95 DIFGWVILAVGIVAWVGFAK 114 (126)
Q Consensus 95 Dv~GWviLa~givaWvg~Ak 114 (126)
-..|=|+|.|+||+|..|-.
T Consensus 18 iaI~IV~lLIiiva~~lf~~ 37 (217)
T PF07423_consen 18 IAIGIVSLLIIIVAYQLFFG 37 (217)
T ss_pred HHHHHHHHHHHHHhhhheec
Confidence 34588889999999977764
No 258
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=28.28 E-value=35 Score=30.88 Aligned_cols=26 Identities=23% Similarity=0.523 Sum_probs=20.0
Q ss_pred cccccCCCcchhhhhHHHHHHHHHHH
Q 033160 84 SKKKKSSDLKYDIFGWVILAVGIVAW 109 (126)
Q Consensus 84 ~kkkk~sDf~YDv~GWviLa~givaW 109 (126)
-|+|+.-|+.+|..||+++.+|++..
T Consensus 469 ~~~~~~~~a~~~~~~w~l~~~g~~~~ 494 (646)
T PRK05771 469 VRKGDYKDAFLAQLGWLLILLGILLI 494 (646)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35556678899999999988886554
No 259
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=28.10 E-value=11 Score=26.36 Aligned_cols=18 Identities=44% Similarity=1.075 Sum_probs=15.0
Q ss_pred chhhhhHHHHHHHHHHHH
Q 033160 93 KYDIFGWVILAVGIVAWV 110 (126)
Q Consensus 93 ~YDv~GWviLa~givaWv 110 (126)
-++--||--.|||.|.||
T Consensus 32 gfeakgwqtyavglvtwv 49 (70)
T PF10953_consen 32 GFEAKGWQTYAVGLVTWV 49 (70)
T ss_pred eecccCceeeeehhHHHH
Confidence 456678999999999996
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=28.10 E-value=51 Score=30.45 Aligned_cols=42 Identities=31% Similarity=0.320 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH--------------------HHHHHHHHhhcCchhHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE--------------------LYQKSLEVAAKAPELHM 56 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne--------------------~YkKsLe~a~KAPelH~ 56 (126)
.--+.-|+++.++|++|+..--+|+ -|.|+|-.+.||-+|-.
T Consensus 132 hlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~ 193 (518)
T KOG1941|consen 132 HLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVN 193 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHH
Confidence 3446779999999999998866665 57888888888766543
No 261
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=27.43 E-value=1.9e+02 Score=24.46 Aligned_cols=7 Identities=43% Similarity=0.809 Sum_probs=5.5
Q ss_pred cCCCcch
Q 033160 88 KSSDLKY 94 (126)
Q Consensus 88 k~sDf~Y 94 (126)
|++||-|
T Consensus 315 kDNd~IY 321 (348)
T cd09242 315 KDNDFIY 321 (348)
T ss_pred cccCeec
Confidence 7888876
No 262
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=26.95 E-value=41 Score=24.22 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhcCCC
Q 033160 95 DIFGWVILAVGIVAWVGFAKSHMP 118 (126)
Q Consensus 95 Dv~GWviLa~givaWvg~Aks~~P 118 (126)
|++.|=||.++||++|.|--...|
T Consensus 2 ~ig~~ElliI~vI~lllFGp~KLP 25 (84)
T PRK00191 2 SLGPWEIGIIVLLIIVLFGAKKLP 25 (84)
T ss_pred CCcHHHHHHHHHHHHHHhcchHHH
Confidence 567788889999999887644433
No 263
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.76 E-value=76 Score=29.72 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=19.8
Q ss_pred HHHHHHH------------HHHHHHHHHHHhcCCC
Q 033160 15 DEAKEYF------------NKATLYFQQAVDEEPS 37 (126)
Q Consensus 15 ~~A~~~f------------~kA~~~FqkAvd~dP~ 37 (126)
.+++-.| +||+.++.|+|.++|+
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~ 436 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI 436 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc
Confidence 6667777 6999999999999996
No 264
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=26.58 E-value=1.2e+02 Score=16.56 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCcH---HHHHHH
Q 033160 24 ATLYFQQAVDEEPSNE---LYQKSL 45 (126)
Q Consensus 24 A~~~FqkAvd~dP~Ne---~YkKsL 45 (126)
..++=+++++.||.|. .||+-|
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~l 26 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWL 26 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHH
Confidence 3466678999999998 566543
No 265
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=26.52 E-value=81 Score=23.39 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=18.3
Q ss_pred ccccCCCcchhhhhHHHHHHHHHHH-HHhhh
Q 033160 85 KKKKSSDLKYDIFGWVILAVGIVAW-VGFAK 114 (126)
Q Consensus 85 kkkk~sDf~YDv~GWviLa~givaW-vg~Ak 114 (126)
||.-+..||- ++|-.|+.+++|++ |+|--
T Consensus 61 KkDvS~~F~L-~~~~ti~lv~~~~~~I~lL~ 90 (103)
T PF12955_consen 61 KKDVSVPFWL-FAGFTIALVVLVAGAIGLLF 90 (103)
T ss_pred cccccchhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 5557777764 45556666666666 66654
No 266
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=26.49 E-value=78 Score=20.03 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=7.3
Q ss_pred hhHHHHHHH
Q 033160 97 FGWVILAVG 105 (126)
Q Consensus 97 ~GWviLa~g 105 (126)
-||+++++.
T Consensus 14 r~Wi~F~l~ 22 (38)
T PF09125_consen 14 RGWIAFALA 22 (38)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 389998887
No 267
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=26.25 E-value=1.4e+02 Score=24.84 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCc
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP 52 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAP 52 (126)
.+++..||++.+-|..|++ |++.+.++-|
T Consensus 108 Ke~KK~FdK~Se~~d~Al~---------K~a~lsk~K~ 136 (215)
T cd07631 108 LTLKEVFQIASNDHDAAIN---------RYSRLSKRRE 136 (215)
T ss_pred HHHHHHHHHhhhHHHHHHH---------HHhcCCCCCC
Confidence 6778888888888888875 5566664443
No 268
>CHL00102 rps20 ribosomal protein S20
Probab=26.15 E-value=1.8e+02 Score=21.00 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHh
Q 033160 2 ILDAISKLEEALM-----------DEAKEYFNKATLYFQQAVD 33 (126)
Q Consensus 2 i~dAisKleeAL~-----------~~A~~~f~kA~~~FqkAvd 33 (126)
+--+|-|+++|+. ++|...|.+|....-+|+.
T Consensus 28 ~rT~iKk~~~ai~~~~~~~~~~d~~~a~~~l~~a~s~iDkaa~ 70 (93)
T CHL00102 28 VKTLIKKYLKNLEDYKTSPNSNNKKKVQETLSSVYSKIDKAVK 70 (93)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888875 4666677777666666653
No 269
>PF09721 Exosortase_EpsH: Transmembrane exosortase (Exosortase_EpsH); InterPro: IPR019127 Proteins in this entry are mostly designated exosortase, analogous to the sortase in cell wall sorting mediated by LPXTG domains in Gram-positive bacteria. Members of this entry are integral membrane proteins with eight predicted transmembrane helices in common. Some proteins in this entry have long trailing sequences past the region described by this model. The best characterised protein in this entry is EpsH of Methylobacillus sp. 12S, where it is part of a locus associated with biosynthesis of the exopolysaccharide methanol-an.
Probab=25.81 E-value=79 Score=24.73 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=19.4
Q ss_pred CCcchhhhhHHHHHHHHHHHHHhhh
Q 033160 90 SDLKYDIFGWVILAVGIVAWVGFAK 114 (126)
Q Consensus 90 sDf~YDv~GWviLa~givaWvg~Ak 114 (126)
.++.-|+.||+++.+.++.-+.+.+
T Consensus 235 ~~~~H~~~G~~~f~~~~~~l~~~~~ 259 (264)
T PF09721_consen 235 FGFFHDILGWIFFFLAVLLLFLLAR 259 (264)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999998766655554
No 270
>PF05892 Tricho_coat: Trichovirus coat protein; InterPro: IPR008879 This family consists of several coat proteins which are specific to the ssRNA positive-strand, no DNA stage viruses such as the Trichoviruses and Vitiviruses.; GO: 0019028 viral capsid
Probab=25.74 E-value=69 Score=26.18 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchh
Q 033160 22 NKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL 54 (126)
Q Consensus 22 ~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPel 54 (126)
.+|.+|+.+.-...=--.+|+|.=+++.|+|++
T Consensus 111 ~eA~~~L~~l~~~g~~TnL~~Kmp~~g~k~PqV 143 (194)
T PF05892_consen 111 PEAYNFLVKLASMGVYTNLYKKMPKLGGKEPQV 143 (194)
T ss_pred HHHHHHHHHHHhcchHhHHHHhhHhhcCCCCeE
Confidence 467777777766777778999999999999985
No 271
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=25.50 E-value=1.3e+02 Score=26.93 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQ 29 (126)
Q Consensus 15 ~~A~~~f~kA~~~Fq 29 (126)
..|++.|+|.++-++
T Consensus 179 rqA~eKfEESkE~aE 193 (366)
T KOG1118|consen 179 RQALEKFEESKELAE 193 (366)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 272
>PHA02898 virion envelope protein; Provisional
Probab=25.50 E-value=90 Score=23.05 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=14.6
Q ss_pred ccccCCCcchhhhhHHHHHHHHHHHHHh
Q 033160 85 KKKKSSDLKYDIFGWVILAVGIVAWVGF 112 (126)
Q Consensus 85 kkkk~sDf~YDv~GWviLa~givaWvg~ 112 (126)
|.++.+|-.|-..-=+.+.+|||.=+||
T Consensus 35 K~~~~~~~~wRalSii~FIlgivl~lG~ 62 (92)
T PHA02898 35 KSEKPADSALRSISIISFILAIILILGI 62 (92)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555544
No 273
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=25.26 E-value=79 Score=20.08 Aligned_cols=11 Identities=27% Similarity=0.966 Sum_probs=8.7
Q ss_pred HHHHHHHHHHH
Q 033160 100 VILAVGIVAWV 110 (126)
Q Consensus 100 viLa~givaWv 110 (126)
+++-+|||.|+
T Consensus 20 ~~~Figiv~wa 30 (48)
T cd01324 20 ALFFLGVVVWA 30 (48)
T ss_pred HHHHHHHHHHH
Confidence 36678899998
No 274
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=25.21 E-value=1.6e+02 Score=23.13 Aligned_cols=51 Identities=25% Similarity=0.486 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH----HHhhcCchhHHH
Q 033160 1 MILDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSL----EVAAKAPELHME 57 (126)
Q Consensus 1 Mi~dAisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL----e~a~KAPelH~e 57 (126)
||.+.+.++=+.+...-.+|.+.|.+|+.+|+.+ ||.-+ ++-.+.|++=.+
T Consensus 22 ~i~~t~e~~~d~~~~~l~~~~~qa~~y~~~~~~e------lR~qv~~l~~~l~~v~~lv~~ 76 (208)
T PF14644_consen 22 MIPETFEQCADNLVQKLQSYQEQADEYHNSCLQE------LRNQVERLEELLPKVPELVFE 76 (208)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777778888888888888888753 55444 455777776554
No 275
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=24.83 E-value=53 Score=27.30 Aligned_cols=15 Identities=27% Similarity=0.860 Sum_probs=11.8
Q ss_pred hhhhHHHHHHHHHHH
Q 033160 95 DIFGWVILAVGIVAW 109 (126)
Q Consensus 95 Dv~GWviLa~givaW 109 (126)
-+.||+++++.++.-
T Consensus 179 Q~lGW~LI~~~~i~a 193 (251)
T PF14798_consen 179 QVLGWILIALVIILA 193 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 389999999886554
No 276
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=24.56 E-value=59 Score=21.45 Aligned_cols=14 Identities=36% Similarity=1.123 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHHHH
Q 033160 95 DIFGWVILAVGIVA 108 (126)
Q Consensus 95 Dv~GWviLa~giva 108 (126)
-+.||+++++|++.
T Consensus 5 ~v~G~~lv~~Gii~ 18 (53)
T PF09656_consen 5 GVLGWVLVVAGIIM 18 (53)
T ss_pred hhHHHHHHHHHHHh
Confidence 36789998888764
No 277
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=24.53 E-value=66 Score=22.45 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=6.5
Q ss_pred HHHHHHHhhhcC
Q 033160 105 GIVAWVGFAKSH 116 (126)
Q Consensus 105 givaWvg~Aks~ 116 (126)
+++.|++..+.+
T Consensus 87 ~i~~~~~~~~l~ 98 (121)
T PF07332_consen 87 LILLLIGRRRLR 98 (121)
T ss_pred HHHHHHHHHHHh
Confidence 345556665554
No 278
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=24.50 E-value=1.9e+02 Score=20.82 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQA 31 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkA 31 (126)
+|+.-|.|+|..-+.+.+++|.+|=.+|
T Consensus 40 ~A~~~l~~~~e~~~~~i~~~A~~~A~ha 67 (91)
T COG2036 40 SAIEELQEALEEYLEEIAEDAVELAEHA 67 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555566666666666666666554443
No 279
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=24.30 E-value=1.9e+02 Score=25.03 Aligned_cols=44 Identities=32% Similarity=0.485 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHhhcCchhHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEP-SNELYQKSLEVAAKAPELHMEI 58 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP-~Ne~YkKsLe~a~KAPelH~ei 58 (126)
.+|-+||.+=..||++|=++-- -|++-.+-++...++-++|-+|
T Consensus 186 ~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~ 230 (294)
T COG1340 186 NEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEF 230 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444444444444444432211 1223333344444444444443
No 280
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=24.27 E-value=76 Score=24.33 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=13.6
Q ss_pred hhhhhHHHHHHHHHHHHHhhh
Q 033160 94 YDIFGWVILAVGIVAWVGFAK 114 (126)
Q Consensus 94 YDv~GWviLa~givaWvg~Ak 114 (126)
.|...|+-+++|+++.+++.-
T Consensus 29 ~~~~~~l~~l~~~~~~~~~~~ 49 (199)
T PF10112_consen 29 FDHSFLLSLLIGAVAFAVVYL 49 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 466677777777766655544
No 281
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=24.25 E-value=2.3e+02 Score=20.91 Aligned_cols=33 Identities=9% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 10 EEALMDEAKEYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 10 eeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
.+|.+.+....=+.+.+.|+.||+.++=....+
T Consensus 86 d~aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r 118 (139)
T TIGR02284 86 DYVVLEEAERGEDRAKKAYDETLADQDTPAAAR 118 (139)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHhcCCCChHHH
Confidence 455556666666788889999998764333333
No 282
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=24.08 E-value=1.8e+02 Score=25.82 Aligned_cols=42 Identities=12% Similarity=0.115 Sum_probs=29.8
Q ss_pred HHHHHH-HHHHH--hcCCCcHHHHHHH--HHhhcCchhHHHHHHhcc
Q 033160 22 NKATLY-FQQAV--DEEPSNELYQKSL--EVAAKAPELHMEIHKHGL 63 (126)
Q Consensus 22 ~kA~~~-FqkAv--d~dP~Ne~YkKsL--e~a~KAPelH~ei~kq~~ 63 (126)
..|-|| |+||+ ..+-.++.++.++ ++|.+.-+++.+.++.+.
T Consensus 174 AQAQEC~~eKail~~~~~~~d~~k~~~iAKlAaQvs~~Y~~a~~~~~ 220 (384)
T cd09248 174 AQAQECIFEGLLLPLLATPQDFFAQLQLAQEAAQVAAEYRLVHRTMA 220 (384)
T ss_pred HHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344444 68887 3343356666665 788999999999999876
No 283
>COG0268 RpsT Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]
Probab=23.94 E-value=2.1e+02 Score=20.71 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q 033160 2 ILDAISKLEEALM----DEAKEYFNKATLYFQQAVD 33 (126)
Q Consensus 2 i~dAisKleeAL~----~~A~~~f~kA~~~FqkAvd 33 (126)
|--.|-|+++|+. +.|...|.+|..-..+|+.
T Consensus 28 ~rT~iKk~~~ai~~gd~~~A~~~l~~a~~~idkaa~ 63 (88)
T COG0268 28 LRTAIKKVEAAIEAGDKEAAKAALKEAQKKIDKAAS 63 (88)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888887 7788888888777777664
No 284
>PRK06851 hypothetical protein; Provisional
Probab=23.88 E-value=1.5e+02 Score=25.99 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
.+|+..||+-..||-.|+|-+-=|+....-+
T Consensus 326 ~~Ak~~hD~lE~~Y~~amDf~kv~~~~~~l~ 356 (367)
T PRK06851 326 AKAKALHDKLEEIYIPAMDFSKVDAIKEEIL 356 (367)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777888888888888887776666655443
No 285
>PRK10054 putative transporter; Provisional
Probab=23.82 E-value=96 Score=25.27 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=18.1
Q ss_pred hhhhhHHHHHHHHHHHHHhhh-cCCCC
Q 033160 94 YDIFGWVILAVGIVAWVGFAK-SHMPP 119 (126)
Q Consensus 94 YDv~GWviLa~givaWvg~Ak-s~~P~ 119 (126)
|..+-|++.+...++|+-|.| ++.||
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 362 PWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred hhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 344458888888999988876 44443
No 286
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=23.79 E-value=87 Score=23.10 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=18.8
Q ss_pred hhhHHHHHHH-HHHHHHhhhcCCCC
Q 033160 96 IFGWVILAVG-IVAWVGFAKSHMPP 119 (126)
Q Consensus 96 v~GWviLa~g-ivaWvg~Aks~~P~ 119 (126)
++|=++|++. |+|.|=|.|+...|
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~s~~ 40 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNTSNV 40 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCC
Confidence 5677777777 88999999977544
No 287
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=23.72 E-value=43 Score=26.06 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHHHHhc
Q 033160 2 ILDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHG 62 (126)
Q Consensus 2 i~dAisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei~kq~ 62 (126)
|++.+++|+++|.+ +...++++..-|+.=|++== +++=+.+=|+..+|-+|+..|+...
T Consensus 43 l~~~~~~l~eeik~-~n~~~~e~l~~~~~kl~et~-~~L~k~~Pev~~qa~~l~e~lQ~~v 101 (155)
T PF07464_consen 43 LQNVSSSLQEEIKD-ANPEAEEALKQLKTKLEETA-EKLRKANPEVEKQANELQEKLQSAV 101 (155)
T ss_dssp HHHHHHHHHHHHTT--SSTHHHHHHHHHHHHHHHH-HGGGG-SHHHHHT-SSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cChhHHHHHHHHHHHHHHHH-HHHHhcChHHHHHHHHHHHHHHHHH
Confidence 56677788888873 33333333333332222110 1222223488899999999999865
No 288
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=23.70 E-value=1e+02 Score=24.15 Aligned_cols=30 Identities=40% Similarity=0.513 Sum_probs=17.7
Q ss_pred ccccCCCcchhhhhHHHHHH---HHHHHHHhhh
Q 033160 85 KKKKSSDLKYDIFGWVILAV---GIVAWVGFAK 114 (126)
Q Consensus 85 kkkk~sDf~YDv~GWviLa~---givaWvg~Ak 114 (126)
++||++=+.+-|.|=++|.+ |+++|+-|..
T Consensus 12 ~~k~~~~l~~iIi~~~llll~~~G~~~~~~~~~ 44 (182)
T PRK08455 12 KKKKSKALLIIIIGVVVLLLLIVGVIAMLLMGS 44 (182)
T ss_pred cCCCCceeEEehHHHHHHHHHHHHHHHHHHhcC
Confidence 44555567777777555433 4666765544
No 289
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.69 E-value=1.5e+02 Score=20.32 Aligned_cols=17 Identities=12% Similarity=0.460 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkA 31 (126)
+++...|+++....+.|
T Consensus 19 eesl~lyeeG~~L~k~C 35 (69)
T PRK14070 19 EESIKLFERGVELYRKC 35 (69)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555544443
No 290
>PRK14762 membrane protein; Provisional
Probab=23.67 E-value=71 Score=18.81 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHH
Q 033160 96 IFGWVILAVGIVAW 109 (126)
Q Consensus 96 v~GWviLa~givaW 109 (126)
+.+|+|+.+-+++-
T Consensus 3 i~lw~i~iifligl 16 (27)
T PRK14762 3 IILWAVLIIFLIGL 16 (27)
T ss_pred eHHHHHHHHHHHHH
Confidence 67999877655543
No 291
>PF10704 DUF2508: Protein of unknown function (DUF2508); InterPro: IPR019644 This entry represents a protein family of unknown function that is conserved in the firmicutes.
Probab=23.61 E-value=2.3e+02 Score=18.88 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
..|++-.+.|...|+..+| |+++
T Consensus 22 ~~ak~ew~~a~~~~~~~~D--~~d~ 44 (71)
T PF10704_consen 22 EQAKQEWENARRLFENVVD--LIDE 44 (71)
T ss_pred HHHHHHHHHHHHHHHHhcC--CcHH
Confidence 7899999999999999999 5543
No 292
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.60 E-value=2.3e+02 Score=20.66 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 033160 3 LDAISKLEEALM---------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 3 ~dAisKleeAL~---------~~A~~~f~kA~~~FqkA 31 (126)
++.+.++++.|. .+...+|++|...-+.|
T Consensus 28 E~klerakeiLe~LndpeisL~eSvkLYkeG~~lL~eA 65 (86)
T PRK14065 28 EEHVHSLEQAIDRLNDPNLSLKDGMDLYKTAMQELFLA 65 (86)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345555555555 55555555555444433
No 293
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=23.47 E-value=1.2e+02 Score=30.34 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
=.+.+|||+.||++|+-.+|+-|
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~ee 111 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPSEE 111 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCcHH
Confidence 35788999999999999999833
No 294
>PHA02898 virion envelope protein; Provisional
Probab=23.35 E-value=62 Score=23.89 Aligned_cols=23 Identities=39% Similarity=0.752 Sum_probs=17.9
Q ss_pred hhhHHHHHHH-HHHHHHhhhcCCC
Q 033160 96 IFGWVILAVG-IVAWVGFAKSHMP 118 (126)
Q Consensus 96 v~GWviLa~g-ivaWvg~Aks~~P 118 (126)
++|=++|++. |+|.|=|.|+..|
T Consensus 16 i~GIiLL~~ACIfAfidfSK~~~~ 39 (92)
T PHA02898 16 AFGIILLIVACICAYIELSKSEKP 39 (92)
T ss_pred HHHHHHHHHHHHHheehhhcCCCc
Confidence 4566667666 8999999998775
No 295
>TIGR03109 exosortase_1 exosortase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this, the most common type so far, exosortase 1. We propose the gene symbol xrtA, analogous to srtA for the most common type of sortase in Gram-positive bacteria.
Probab=23.18 E-value=75 Score=26.36 Aligned_cols=25 Identities=16% Similarity=0.549 Sum_probs=19.8
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHhh
Q 033160 89 SSDLKYDIFGWVILAVGIVAWVGFA 113 (126)
Q Consensus 89 ~sDf~YDv~GWviLa~givaWvg~A 113 (126)
..+++-|..||+++++.++.=++++
T Consensus 238 a~g~~H~~~Gw~~F~~~~~~l~~~~ 262 (267)
T TIGR03109 238 ALGFDHVVYGWIFFGVVMALLFGIG 262 (267)
T ss_pred HhcccHhcccHHHHHHHHHHHHHHH
Confidence 3579999999999999876655554
No 296
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=22.98 E-value=2.5e+02 Score=21.32 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
..|++.|..|..-|..++..=|.|=
T Consensus 135 ~~aR~~YN~av~~yN~~i~~FP~~l 159 (186)
T PF04011_consen 135 AAARRAYNDAVRDYNTAIRQFPTNL 159 (186)
T ss_dssp HHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHH
Confidence 6788899999999999999888763
No 297
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.92 E-value=2e+02 Score=24.49 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHHHHhc
Q 033160 2 ILDAISKLEEALMDEAKEYF---N---KATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHG 62 (126)
Q Consensus 2 i~dAisKleeAL~~~A~~~f---~---kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei~kq~ 62 (126)
+++|..|||+.-..-+..+| + +=..||..-|+.. =+.||+||++-.+ ++.+|+-+.
T Consensus 180 ~eea~~K~E~~kd~~~a~Mynfl~kE~e~a~~l~~lveaQ--~~YHrqsl~~Le~---~l~~~~~~~ 241 (257)
T cd07620 180 EEECWRKLEQCKDQYSADLYHFATKEDSYANYFIRLLELQ--AEYHKNSLEFLDK---NITELKENH 241 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HHHHHHHhh
Confidence 57888899888773333333 2 2234566665544 3678888887754 355555443
No 298
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=22.92 E-value=98 Score=31.60 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHHHHhc
Q 033160 21 FNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHG 62 (126)
Q Consensus 21 f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei~kq~ 62 (126)
++++..|||+++++.|+.+ -.|--++++|-|...-++.+|.
T Consensus 90 ld~~~~~yq~~~l~le~q~-~nk~~~lcKk~~d~~~~fk~hl 130 (1238)
T KOG1127|consen 90 LDRAAKCYQRAVLILENQS-KNKGEALCKKFDDQYYQFKKHL 130 (1238)
T ss_pred hhHhHHHHHHHHHhhhhhh-hhHHHHHHHHHhhHHHHHHHHH
Confidence 3456666666666666444 2333467778887744444443
No 299
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.85 E-value=1.1e+02 Score=26.91 Aligned_cols=12 Identities=42% Similarity=0.509 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q 033160 3 LDAISKLEEALM 14 (126)
Q Consensus 3 ~dAisKleeAL~ 14 (126)
.+|++|..||+.
T Consensus 195 kEA~~~YreAi~ 206 (329)
T KOG0545|consen 195 KEASSKYREAII 206 (329)
T ss_pred HHHHHHHHHHHH
Confidence 467777777776
No 300
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=22.69 E-value=36 Score=23.59 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=16.3
Q ss_pred hhhhhHHHHHHHHHHHHHhh
Q 033160 94 YDIFGWVILAVGIVAWVGFA 113 (126)
Q Consensus 94 YDv~GWviLa~givaWvg~A 113 (126)
+||++|=+|.++||+.|.|-
T Consensus 1 f~ig~~EllvI~vvallv~G 20 (80)
T TIGR01410 1 FDIGFSELLLIAVVALVVLG 20 (80)
T ss_pred CCCcHHHHHHHHHHHHheEC
Confidence 47888889999999987664
No 301
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=22.65 E-value=1.2e+02 Score=18.35 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=21.9
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160 4 DAISKLEEALM----------DEAKEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 4 dAisKleeAL~----------~~A~~~f~kA~~~FqkAvd~dP~N 38 (126)
+.|..|+..|. ..--....+|..-||+...+.++-
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~~tG 47 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLPVTG 47 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-SSS
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcCCCC
Confidence 35666666666 122344567888888888887753
No 302
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=22.60 E-value=71 Score=32.36 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcC-c----------hhHHHHHHhc
Q 033160 20 YFNKATLYFQQAVDEEPSNELYQKSLEVAAKA-P----------ELHMEIHKHG 62 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KA-P----------elH~ei~kq~ 62 (126)
.|+||.+||+| -+-|-|+.|+|+.| | .+|+|-++|.
T Consensus 676 d~dkale~fkk-------gdaf~kaielarfafp~evv~lee~wg~hl~~~~q~ 722 (1636)
T KOG3616|consen 676 DFDKALECFKK-------GDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQL 722 (1636)
T ss_pred CHHHHHHHHHc-------ccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhH
Confidence 45566666665 56788999999765 4 4677777765
No 303
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=22.45 E-value=1.1e+02 Score=19.62 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=15.2
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHH
Q 033160 8 KLEEALM--DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 8 KleeAL~--~~A~~~f~kA~~~FqkA 31 (126)
-|++||. .+|.++|+.=...+|+.
T Consensus 9 dl~~aL~~~p~a~~~f~~l~~~~rr~ 34 (63)
T PF13376_consen 9 DLEAALEANPEAKEFFESLTPSYRRE 34 (63)
T ss_pred HHHHHHHCCHHHHHHHHHCCHHHHHH
Confidence 4677777 56777776655555544
No 304
>PLN03218 maturation of RBCL 1; Provisional
Probab=22.39 E-value=2.4e+02 Score=27.98 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHh--cCCCcHHHHHHHHHhhc------CchhHHHHHHhcc
Q 033160 19 EYFNKATLYFQQAVD--EEPSNELYQKSLEVAAK------APELHMEIHKHGL 63 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd--~dP~Ne~YkKsLe~a~K------APelH~ei~kq~~ 63 (126)
+.+++|.++|++..+ ..||..+|..-|....+ |-++|.++.+.+.
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 456788888887654 57999999888866654 5556666666654
No 305
>PRK14756 hypothetical protein; Provisional
Probab=22.30 E-value=1.1e+02 Score=18.30 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=15.7
Q ss_pred CCCcchhhhhHHHHHHHHHHH
Q 033160 89 SSDLKYDIFGWVILAVGIVAW 109 (126)
Q Consensus 89 ~sDf~YDv~GWviLa~givaW 109 (126)
++|+||..+-=||-.+-||+.
T Consensus 2 ~tdLK~SL~tTvvaL~~Iva~ 22 (29)
T PRK14756 2 STDLKFSLVTTIIVLGLIVAV 22 (29)
T ss_pred CcchhhhHHHHHHHHHHHHHH
Confidence 689999998877766556654
No 306
>COG2707 Predicted membrane protein [Function unknown]
Probab=21.94 E-value=76 Score=25.25 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=13.5
Q ss_pred hhhhHHHHHHH-HHHHHH
Q 033160 95 DIFGWVILAVG-IVAWVG 111 (126)
Q Consensus 95 Dv~GWviLa~g-ivaWvg 111 (126)
..-+|+-+++| .|+|++
T Consensus 82 s~k~~~Al~~Gi~VawLa 99 (151)
T COG2707 82 SWKMIVALAVGVLVAWLA 99 (151)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 34589999999 799974
No 307
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=21.87 E-value=2.1e+02 Score=28.79 Aligned_cols=44 Identities=32% Similarity=0.345 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHhcC-----CCcHHHHHHH
Q 033160 2 ILDAISKLEEALM------------------------DEAKEYFNKATLYFQQAVDEE-----PSNELYQKSL 45 (126)
Q Consensus 2 i~dAisKleeAL~------------------------~~A~~~f~kA~~~FqkAvd~d-----P~Ne~YkKsL 45 (126)
|+||++++|+-+. -+|....=+|..--|+=+..- |-||.|+||=
T Consensus 760 I~~A~~rie~~~~Kar~ss~~~~LeVne~iL~~ct~lm~aI~~Lv~as~~lQ~EIVasgrgsas~~eFY~kNs 832 (980)
T KOG0980|consen 760 IEDAVSRIEAIAAKARESSSGVRLEVNESILSACTALMEAIMALVKASRELQTEIVASGRGSASPNEFYKKNS 832 (980)
T ss_pred HHHHHHHHHHHHHHhhhcCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcC
Confidence 7899999998776 455555555555555555444 6689999874
No 308
>PF05504 Spore_GerAC: Spore germination B3/ GerAC like, C-terminal ; InterPro: IPR008844 The GerAA, -AB, and -AC proteins of the Bacillus subtilis spore are required for the germination response to L-alanine as the sole germinant. Members of GerAC family are thought to be located in the inner spore membrane. Although the function of this family is unclear, they are likely to encode the components of the germination apparatus that respond directly to this germinant, mediating the spore's response [].; GO: 0009847 spore germination, 0016020 membrane; PDB: 3N54_B.
Probab=21.83 E-value=2.1e+02 Score=20.70 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~ 37 (126)
+.+.+||+++..+-.....++.+-+|+-...||=
T Consensus 93 ~~~~~le~~~~~~i~~~~~~~i~k~q~~~~~D~l 126 (171)
T PF05504_consen 93 EEIKELEKQLEEEIKKEIQSLIKKMQKELGVDPL 126 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcChH
Confidence 5678899999988888888888889988888883
No 309
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.78 E-value=1.3e+02 Score=26.30 Aligned_cols=32 Identities=31% Similarity=0.331 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 033160 7 SKLEEALMDEAKEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 7 sKleeAL~~~A~~~f~kA~~~FqkAvd~dP~N 38 (126)
.+|.|+...-..+.|.+|...|+.|+..+|+|
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~ 167 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPEN 167 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCccc
Confidence 45566666666788999999999999999999
No 310
>PF11804 DUF3325: Protein of unknown function (DUF3325); InterPro: IPR021762 This family of short proteins are functionally uncharacterised. This family is restricted to Alpha-, Beta- and Gamma-proteobacteria.
Probab=21.77 E-value=83 Score=22.90 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=8.2
Q ss_pred hhhhhHHHHHH
Q 033160 94 YDIFGWVILAV 104 (126)
Q Consensus 94 YDv~GWviLa~ 104 (126)
.-+.||..|++
T Consensus 39 LR~~Gw~lL~l 49 (106)
T PF11804_consen 39 LRLAGWLLLAL 49 (106)
T ss_pred HHHHHHHHHHH
Confidence 45889998864
No 311
>smart00428 H3 Histone H3.
Probab=21.74 E-value=2.4e+02 Score=20.78 Aligned_cols=29 Identities=28% Similarity=0.205 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 3 LDAISKLEEALMDEAKEYFNKATLYFQQA 31 (126)
Q Consensus 3 ~dAisKleeAL~~~A~~~f~kA~~~FqkA 31 (126)
.+|+.-|+||...-..+.|+.|..|=..|
T Consensus 56 ~~Al~aLQeasE~ylv~lfeda~~~a~HA 84 (105)
T smart00428 56 SSAIMALQEAAEAYLVGLFEDTNLLAIHA 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888888888888888888887776554
No 312
>PF04193 PQ-loop: PQ loop repeat
Probab=21.74 E-value=98 Score=19.06 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHHHH
Q 033160 94 YDIFGWVILAVGIVAWV 110 (126)
Q Consensus 94 YDv~GWviLa~givaWv 110 (126)
.+++||+.+.+.++.|+
T Consensus 2 ~~~~g~i~~~~~~~~~l 18 (61)
T PF04193_consen 2 SNILGIISIVLWIISFL 18 (61)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36788888888877775
No 313
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.73 E-value=1.1e+02 Score=29.40 Aligned_cols=43 Identities=33% Similarity=0.185 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCc--HHHHH-----HHHHhhcCchhHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSN--ELYQK-----SLEVAAKAPELHME 57 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~N--e~YkK-----sLe~a~KAPelH~e 57 (126)
.+|+++.++|.+||-|--.+=-+| -+|+- +||-.++|=||.+.
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 778888888888887743332222 23332 34545555555543
No 314
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.72 E-value=92 Score=32.08 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=24.2
Q ss_pred cCCCcchhhhh---HHHHHHHHHHHHHhhhcCCCCCCC
Q 033160 88 KSSDLKYDIFG---WVILAVGIVAWVGFAKSHMPPPPP 122 (126)
Q Consensus 88 k~sDf~YDv~G---WviLa~givaWvg~Aks~~P~~~p 122 (126)
-++||.||+.| |+||.--|.+-| ++-||..+
T Consensus 1176 vledfdddiagiElfiiflEQicaal----lncppnhQ 1209 (1777)
T KOG1846|consen 1176 VLEDFDDDIAGIELFIIFLEQICAAL----LNCPPNHQ 1209 (1777)
T ss_pred ccccccccchhHHHHHHHHHHHHHHH----hcCCcccC
Confidence 58999999998 888888888877 56555433
No 315
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=21.72 E-value=1.2e+02 Score=27.45 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=26.7
Q ss_pred HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCC
Q 033160 4 DAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 4 dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~ 37 (126)
-|+.-|+.||. .-++..|++|.+-++..++.||+
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 35666777776 56778899999999999998886
No 316
>smart00526 H15 Domain in histone families 1 and 5.
Probab=21.69 E-value=27 Score=22.44 Aligned_cols=25 Identities=36% Similarity=0.321 Sum_probs=15.5
Q ss_pred ChHHHHHHHHHHHH--HHHHHHHHHHH
Q 033160 1 MILDAISKLEEALM--DEAKEYFNKAT 25 (126)
Q Consensus 1 Mi~dAisKleeAL~--~~A~~~f~kA~ 25 (126)
||.+||+.|.|-=- ..|...|=++.
T Consensus 10 mI~eAI~~l~er~GsS~~aI~kyi~~~ 36 (66)
T smart00526 10 MITEAISALKERKGSSLQAIKKYIEAN 36 (66)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 78899988877111 44555555553
No 317
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.61 E-value=1e+02 Score=28.25 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHH-----HHH-------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160 3 LDAISKLEEALM-----DEA-------------KEYFNKATLYFQQAVDEEPSNELYQKSLEV 47 (126)
Q Consensus 3 ~dAisKleeAL~-----~~A-------------~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~ 47 (126)
.-+.+-||.||. ++| ..-|..|..||+-||.-||+|.-=-.||-+
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLav 437 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAV 437 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHH
Confidence 345677888887 222 345788999999999999999866666644
No 318
>PF15651 Tox-SGS: Salivary glad secreted protein domain toxin
Probab=21.60 E-value=78 Score=23.56 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHH
Q 033160 96 IFGWVILAVGIVAWV 110 (126)
Q Consensus 96 v~GWviLa~givaWv 110 (126)
|-||++||-.+.+-|
T Consensus 79 vDGWLmLArVaPaa~ 93 (100)
T PF15651_consen 79 VDGWLMLARVAPAAV 93 (100)
T ss_pred hhhhHHHHHHHHHHH
Confidence 679999998766654
No 319
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=21.56 E-value=2.5e+02 Score=23.82 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHhhcC
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNE-LYQKSLEVAAKA 51 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne-~YkKsLe~a~KA 51 (126)
.+..+|.|++. +...|+.+.+-++.-+++||-|| .|+.-++...+.
T Consensus 154 ~~l~~lae~~~--~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~ 200 (280)
T COG3629 154 KALTKLAEALI--ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVN 200 (280)
T ss_pred HHHHHHHHHHH--hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc
No 320
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc.
Probab=21.42 E-value=2.1e+02 Score=23.60 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHH
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHM 56 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ 56 (126)
+.+.+||+++..+-++.+.+..+-+|+ +.-|| +.=...+-.+-|..-.
T Consensus 294 ~~~~~le~~~e~~i~~~~~~~i~k~Q~-~~~D~----~g~g~~~~~~~p~~wk 341 (371)
T TIGR02887 294 KNLKKIEKEAEKEIEKEIEQLIKKLQK-YKIDP----LGLGDELYRKHPKLWK 341 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCc----chhHHHHHHhChHHHH
Confidence 678899999999999999999999999 99888 2333334445555443
No 321
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=21.28 E-value=1.2e+02 Score=22.30 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=15.2
Q ss_pred ccccCCCcchhhhhHHHHHHHHHHHHHh
Q 033160 85 KKKKSSDLKYDIFGWVILAVGIVAWVGF 112 (126)
Q Consensus 85 kkkk~sDf~YDv~GWviLa~givaWvg~ 112 (126)
|.++.+|-.|-+.--+.+.+|||.=+|+
T Consensus 35 K~~~~~~~~wRalSii~FI~giil~lG~ 62 (92)
T PF05767_consen 35 KNTKPTDYTWRALSIICFILGIILTLGI 62 (92)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4455566555555555555555555444
No 322
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=21.21 E-value=1.1e+02 Score=23.17 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=16.1
Q ss_pred CcchhhhhHHHHHHHHHHHHH
Q 033160 91 DLKYDIFGWVILAVGIVAWVG 111 (126)
Q Consensus 91 Df~YDv~GWviLa~givaWvg 111 (126)
||.+.-+.|.++...|+.|+.
T Consensus 13 ~~~~~~~~~~~i~Flil~~iL 33 (173)
T PRK13460 13 DVNPGLVVWTLVTFLVVVLVL 33 (173)
T ss_pred CCcHhHHHHHHHHHHHHHHHH
Confidence 566667889888888888873
No 323
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=21.17 E-value=2e+02 Score=27.84 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK 50 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~K 50 (126)
..=++..++|...|..-++.+|||=-|-..|+.+.-
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 334567899999999999999999988888887763
No 324
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=21.10 E-value=1e+02 Score=26.01 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
.-+...++.|..+|.||++++|.--.
T Consensus 109 ~~~~~~~d~A~~~ll~A~~l~pr~~~ 134 (277)
T PF13226_consen 109 LGAHQACDQAVAALLKAIELSPRPVA 134 (277)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 56788999999999999999998763
No 325
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=20.61 E-value=83 Score=28.17 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHH
Q 033160 22 NKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEI 58 (126)
Q Consensus 22 ~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei 58 (126)
+||...|.+||.+|-+--+|. +|.+-.+|-.+|.+|
T Consensus 17 kkA~~l~~~av~~Eq~G~l~d-ai~fYR~AlqI~~di 52 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDGSLYD-AINFYRDALQIVPDI 52 (366)
T ss_pred HHHHHHHHHHHHHhhcCcHHH-HHHHHHhhhcCCchH
No 326
>TIGR02602 8TM_EpsH eight transmembrane protein EpsH (proposed exosortase). Members of this family are integral membrane proteins with eight predicted transmembrane helices in common. Some members of this family have long trailing sequences past the region described by this model. This model does not include the region of the first predicted transmembrane region. The best characterized member is EpsH of Methylobacillus sp. 12S, where it is part of a locus associated with biosynthesis of the exopolysaccharide methanolan.
Probab=20.38 E-value=1e+02 Score=25.03 Aligned_cols=21 Identities=33% Similarity=0.727 Sum_probs=17.1
Q ss_pred CCCcchhhhhHHHHHHHHHHH
Q 033160 89 SSDLKYDIFGWVILAVGIVAW 109 (126)
Q Consensus 89 ~sDf~YDv~GWviLa~givaW 109 (126)
..+++-|..||+++++.++.=
T Consensus 213 a~~~~H~~~G~~~F~~~~~ll 233 (241)
T TIGR02602 213 ASGWAHDVLGWVLFAVSMFLL 233 (241)
T ss_pred HccchHhhhhHHHHHHHHHHH
Confidence 357899999999999985543
No 327
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=20.35 E-value=2.9e+02 Score=18.68 Aligned_cols=50 Identities=12% Similarity=0.321 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHHHH
Q 033160 3 LDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHK 60 (126)
Q Consensus 3 ~dAisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei~k 60 (126)
...+..||+.|..-.-.. +.--..||++..|.++.+|+..--..-.=+..
T Consensus 4 g~~l~~l~~~l~~l~~~~--------~~~~~~d~~~~~Y~~A~klv~~Ga~~~el~~~ 53 (70)
T PF10975_consen 4 GQRLAELEQQLKQLEDQQ--------EELEQRDPDSPLYSQAIKLVRQGASVEELMEE 53 (70)
T ss_pred hHHHHHHHHHHHHHHHHH--------HHHHcCCCCcchHHHHHHHHHcCCCHHHHHHH
Confidence 345677777766211111 11247899999999999999776554433333
No 328
>TIGR03113 exosortase_2 exosortase 2. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this relatively uncommon proteobacterial type to be type 2. We propose the gene symbol xrtB. Most species encountered so far with xrtB also contain xrtA (TIGR03109).
Probab=20.30 E-value=84 Score=26.30 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=19.0
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHh
Q 033160 89 SSDLKYDIFGWVILAVGIVAWVGF 112 (126)
Q Consensus 89 ~sDf~YDv~GWviLa~givaWvg~ 112 (126)
.-+|+-|..||+++++.++.=+++
T Consensus 237 a~g~~H~~~G~v~F~~~~~ll~~~ 260 (268)
T TIGR03113 237 GQGFLHGFAGMVLFVSALLLIIGV 260 (268)
T ss_pred HhccccccccHHHHHHHHHHHHHH
Confidence 457999999999999987655443
No 329
>PRK15244 virulence protein SpvB; Provisional
Probab=20.20 E-value=50 Score=31.15 Aligned_cols=37 Identities=32% Similarity=0.624 Sum_probs=21.8
Q ss_pred CCCcchhhhhHHHHHHHH--HHH--HHhhh---cCCCCCCCCCC
Q 033160 89 SSDLKYDIFGWVILAVGI--VAW--VGFAK---SHMPPPPPTPP 125 (126)
Q Consensus 89 ~sDf~YDv~GWviLa~gi--vaW--vg~Ak---s~~P~~~p~~~ 125 (126)
+.+|.||-..=+-+.+++ +|+ =|--+ .+||||||+||
T Consensus 330 rl~L~Yde~~~~S~L~sv~~~a~e~dg~~~~~~~~~~~~~~~~~ 373 (591)
T PRK15244 330 RLLLEYDENPILTQLCAARTLAYEGDGYRRAPVNNMMPPPPPPP 373 (591)
T ss_pred eeecccccCcchhhhhhhhhheecCCCcccccCCCCCCCcccCc
Confidence 678999986665555543 333 12222 66777776665
No 330
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=20.17 E-value=1.7e+02 Score=20.86 Aligned_cols=31 Identities=19% Similarity=0.047 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALMDEAKEYFNKATLYFQQAV 32 (126)
Q Consensus 2 i~dAisKleeAL~~~A~~~f~kA~~~FqkAv 32 (126)
.+.++..|+.|......+.|+++..+.+||.
T Consensus 26 yd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~ 56 (122)
T PF02561_consen 26 YDGAIEFLKQAKEAIEQGDIEEKNEALQKAQ 56 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566777777776444444555555555554
No 331
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.13 E-value=2.4e+02 Score=22.35 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 033160 15 DEAKEYFNKATLYFQQAVDE 34 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~ 34 (126)
.+++..||++.+-|-.|++.
T Consensus 104 KE~kk~Fdk~s~~yd~al~k 123 (200)
T cd07603 104 KESKKHFEKISDDLDNALVK 123 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999888873
Done!